#block_column #block_row #column #row #probe_id #initdb_id #probe_seq #reporter_group #control_type #map_sgn_id #map_sgn_annot #map_gene_id #map_gene_annot 1 4 1 20 opLeV0100000001 sgn|U227048 AGATCCTGCCTCAATCCCAAACCGTCAAGGAGACCCTTAATGAGATACATCCTTAAAGCTTTGGAAAACC Experimental SGN-U567288 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157340820|emb|CAO47625.1| (e_value=3e-32) unnamed; (*ATH) AT2G16250.1 (e_value=2e-26) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative | chr2:7046764-7050015 REVERSE | Aliases: F16F14.25, F16F14_25; Solyc01g109650.2.1 genomic_reference:SL2.40ch01 gene_region:88293661-88299718 transcript_region:SL2.40ch01:88293661..88299718- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK" 1 2 1 20 opLeV0100000002 sgn|U228588 CACATGCGGTCAGGTGGAAGGAATGAAAGTCCATGCCAATGAGGGGGGAGTAACACAAACACGTGGTGGT Experimental SGN-U580247 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157341431|emb|CAO49338.1| (e_value=4e-116) unnamed; (*ATH) AT1G67060.1 (e_value=6e-114) | Symbol: None | expressed protein | chr1:25040279-25043029 FORWARD | Aliases: F1O19.19, F1O19_19; Solyc03g034250.2.1 genomic_reference:SL2.40ch03 gene_region:10215436-10222829 transcript_region:SL2.40ch03:10215436..10222829- functional_description:"Similarity the predicted A. niger protein contains a neutral zinc metallopeptidases (AHRD V1 **-- A2QF33_ASPNC)" 1 8 5 20 opLeV0100000003 sgn|U229737 GGTTGCCTGTAATGCATATCGAGGAGAAGTTTCGGGCGTTCCAGTGATACTTATTGAACCATCCAACCAC Experimental SGN-U595206 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|187611221|gb|ACD13790.1| (e_value=1e-68) starch; (*ATH) AT4G18240.1 (e_value=4e-17) | Symbol: None | starch synthase-related protein, contains similarity to starch synthase GI:4582783 from (Vigna unguiculata) | chr4:10082163-10087214 FORWARD | Aliases: T9A21.90, T9A21_90; (*SWP) sp|Q3JEW3|GLGA1_NITOC (e_value=1e-19) Glycogen synthase 1 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA1; Solyc07g042830.2.1 genomic_reference:SL2.40ch07 gene_region:53663549-53682449 transcript_region:SL2.40ch07:53663549..53682449- go_terms:GO:0016757,GO:0005515 functional_description:"Glycogen synthase (AHRD V1 ***- D1R4V0_9CHLA); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type " 1 6 5 20 opLeV0100000004 sgn|U220654 GTCATGCAGTCGGGGCTTCAAGTACGGACCGTTATCCCTTTGAAAGTATTGTGAATACTCTAGCTCCATC Experimental SGN-U568464 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157360794|emb|CAO70395.1| (e_value=1e-81) unnamed; (*ATH) AT4G00755.1 (e_value=5e-75) | Symbol: None | F-box family protein, ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 | chr4:325085-326970 FORWARD | Aliases: None; Solyc01g091720.2.1 genomic_reference:SL2.40ch01 gene_region:77073061-77079618 transcript_region:SL2.40ch01:77073061..77079618+ functional_description:"F-box family protein (AHRD V1 ***- B9IC68_POPTR)" 1 4 5 20 opLeV0100000005 sgn|U217459 CACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCA Experimental SGN-U574038 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157355842|emb|CAO49689.1| (e_value=6e-32) unnamed; (*ATH) AT5G64170.1 (e_value=9e-27) | Symbol: None | dentin sialophosphoprotein-related, contains weak similarity to Swiss-Prot:Q9NZW4 dentin sialophosphoprotein precursor (Homo sapiens) | chr5:25689692-25693972 REVERSE | Aliases: MHJ24.1, MHJ24_1; Solyc04g009050.2.1 genomic_reference:SL2.40ch04 gene_region:2611384-2617110 transcript_region:SL2.40ch04:2611384..2617110- functional_description:"Os01g0498200 protein (Fragment) (AHRD V1 *-*- Q0JMJ0_ORYSJ)" 1 2 5 20 opLeV0100000006 sgn|U223445 TTGAGGCGCACACGAGCTGACTCAAACACCGTATTTATGCCTCATTTTGCAGCAGAGGGACATTATTTTC Experimental SGN-U585225 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157350817|emb|CAO40932.1| (e_value=9e-56) unnamed; (*ATH) AT3G28050.1 (e_value=8e-43) | Symbol: None | nodulin MtN21 family protein, similar to MtN21 (Medicago truncatula) GI:2598575; contains Pfam profile PF00892: Integral membrane protein | chr3:10444054-10446622 FORWARD | Aliases: MMG15.22; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=3e-28) Auxin-induced protein 5NG4 OS=Pinus taeda; Solyc05g005840.2.1 genomic_reference:SL2.40ch05 gene_region:657718-661216 transcript_region:SL2.40ch05:657718..661216+ go_terms:GO:0016020 functional_description:"Nodulin MtN21 family protein (AHRD V1 ***- D7LPP0_ARALY); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane " 1 8 9 20 opLeV0100000007 sgn|U241324 GGCAGCACGCCCTGCCACGGATGCATTATACATATGCTACAATTACTAGGTTTCCTCGTAAAAAACTACA Experimental SGN-U575007 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157348908|emb|CAO23986.1| (e_value=8e-142) unnamed; (*ATH) AT3G07890.2 (e_value=4e-138) |; (*SWP) sp|Q28CB1|TBD2B_XENTR (e_value=2e-44) TBC1 domain family member 2B OS=Xenopus tropicalis GN=tbc1d2b; Solyc07g049580.2.1 genomic_reference:SL2.40ch07 gene_region:57242622-57247236 transcript_region:SL2.40ch07:57242622..57247236+ go_terms:GO:0005097,GO:0030165 functional_description:"TBC1 domain family member 2 (AHRD V1 **** Q5TBQ7_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC " 1 6 9 20 opLeV0100000008 sgn|U213417 GCAAGAATATGCTTTCTACTGCCAACCTACTTGGCAAAGACGCGGATGATGATTATCCCGCGACATCATC Experimental SGN-U579121 Tomato 200607#2 [88 ESTs aligned] (*GB) gi|1161575|emb|CAA64417.1| (e_value=6e-168) homeobox [Lycopersicon esculentum]; (*ATH) AT3G01470.1 (e_value=2e-35) Symbol: None | homeobox-leucine zipper protein 5 (HAT5) / HD-ZIP protein 5 / HD-ZIP protein (HB-1), identical to homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5) (HD-ZIP protein ATHB-1) GB:Q02283 (Arabidopsis thaliana) | chr3:182567-184410 RE... ; (*SWP) sp|Q02283|HAT5_ARATH (e_value=2e-34) Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5; Solyc03g113270.2.1 genomic_reference:SL2.40ch03 gene_region:57510884-57513100 transcript_region:SL2.40ch03:57510884..57513100+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox IPR017970 Homeobox, conserved site " 1 2 9 20 opLeV0100000009 sgn|U217259 GGCGATGAACCAAGGATTGCTTCAGTGCATGGGTGTTAGCCATGCTTCCATAGAAACTGTTCTTCGAACA Experimental SGN-U567385 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|16417946|gb|AAL18925.1|AF429384_1 (e_value=5e-133) mevalonate; (*ATH) AT5G27450.1 (e_value=3e-111) | Symbol: None | mevalonate kinase (MK), identical to mevalonate kinase (Arabidopsis thaliana) SWISS-PROT:P46086 | chr5:9690613-9693227 FORWARD | Aliases: F21A20.160, F21A20_160; (*SWP) sp|P46086|KIME_ARATH (e_value=3e-110) Mevalonate kinase OS=Arabidopsis thaliana GN=At5g27450; Solyc01g098840.2.1 genomic_reference:SL2.40ch01 gene_region:80999140-81004317 transcript_region:SL2.40ch01:80999140..81004317+ go_terms:GO:0004496 functional_description:"Mevalonate kinase (AHRD V1 **** Q944G2_HEVBR); contains Interpro domain(s) IPR006205 Mevalonate kinase " 3 8 1 20 opLeV0100000010 sgn|U221928 AGTGTATTTCTGGTGTCTGGTTAGCTTGCATGCACCTTTTTGGGGATTCG Experimental SGN-U581953 Tomato 200607#2 [3 ESTs aligned] \N \N 3 6 1 20 opLeV0100000011 sgn|U227790 CACCACTATCTGAAGTAACATTAAATTAGTAGGGACCCATGGGTGGCATACCAAATGGAGGCATCGGAGG Experimental SGN-U562685 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|30681617|ref|NP_187724.2| (e_value=6e-18) clathrin heavy chain -related [Arabidopsis thaliana]; (*ATH) AT3G11130.1 (e_value=6e-20) | Symbol: None | clathrin heavy chain, putative, similar to Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) (Homo sapiens) | chr3:3482155-3491914 REVERSE | Aliases: F11B9.30; Solyc03g096000.2.1 genomic_reference:SL2.40ch03 gene_region:51242345-51256561 transcript_region:SL2.40ch03:51242345..51256561- go_terms:GO:0030506,GO:0005198,GO:0031072 functional_description:"Clathrin heavy chain (AHRD V1 ***- Q39834_SOYBN); contains Interpro domain(s) IPR016341 Clathrin, heavy chain " 3 4 1 20 opLeV0100000012 sgn|U216858 ATAAAGCCATCGAATCAAGGCTGGATCGTCGTTGTACATTTGTCGCTCTCGGTGGTGGAGTTATAGGTGA Experimental SGN-U568781 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|18654278|gb|AAL77575.1|L46847_1 (e_value=0) dehydroquinate; (*ATH) AT5G66120.2 (e_value=0) | Symbol: None | 3-dehydroquinate synthase, putative, similar to aroB (Neisseria gonorrhoeae)(GI:2661441); contains 3-dehydroquinate synthase domain PF01761 | chr5:26448602-26451004 REVERSE | Aliases: None; (*SWP) sp|Q31DP9|AROB_THICR (e_value=9e-125) 3-dehydroquinate synthase OS=Thiomicrospira crunogena (strain XCL-2) GN=aroB; Solyc02g083590.2.1 genomic_reference:SL2.40ch02 gene_region:41515715-41520837 transcript_region:SL2.40ch02:41515715..41520837- go_terms:GO:0008797 functional_description:"Dehydroquinate synthase (AHRD V1 ***- Q8RU74_SOLLC); contains Interpro domain(s) IPR016037 3-dehydroquinate synthase AroB, subgroup " 3 2 1 20 opLeV0100000013 sgn|U215059 GGTTGCAAATATAGCTGTGGAGGGACGGAAAGCTCTTCTTGAGAAGGACTACAATAAGTTAGCAGCCCTC Experimental SGN-U582213 Tomato 200607#2 [26 ESTs aligned] (*GB) gi|157345385|emb|CAO14683.1| (e_value=2e-164) unnamed; (*ATH) AT3G01640.1 (e_value=1e-161) | Symbol: None | GHMP kinase family protein, contains GHMP kinases putative ATP-binding protein domain, Pfam:PF00288 | chr3:239388-241450 FORWARD | Aliases: F4P13.18, F4P13_18; Solyc02g093440.2.1 genomic_reference:SL2.40ch02 gene_region:48893526-48896917 transcript_region:SL2.40ch02:48893526..48896917+ go_terms:GO:0004335 functional_description:"GHMP kinase family protein (AHRD V1 ***- D7L9M7_ARALY); contains Interpro domain(s) IPR014721 Ribosomal protein S5 domain 2-type fold " 3 8 5 20 opLeV0100000014 sgn|U223269 GAATTATTGGGATTCAGTGAGTACTATGGCAGGGGAAGTGGAGGATCCTGGCAAAACAATTCCTAAGGCT Experimental SGN-U583517 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157340622|emb|CAO47427.1| (e_value=1e-92) unnamed; (*ATH) AT1G31830.1 (e_value=1e-85) | Symbol: None | amino acid permease family protein, weak similarity to y+LAT1a (amino acid transporter) (Mus musculus) GI:3970791; contains Pfam profile PF00324: Amino acid permease | chr1:11418606-11420818 REVERSE | Aliases: F5M6.16, F5M6_16; (*SWP) sp|P63349|Y1999_MYCTU (e_value=1e-11) Uncharacterized transporter Rv1999c/MT2055 OS=Mycobacterium tuberculosis GN=Rv1999c; Solyc09g092420.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66868801-66870586 transcript_region:SL2.40ch09:66868801..66870586- go_terms:GO:0016020 functional_description:"Amino acid permease-like protein (Fragment) (AHRD V1 *-*- B2ZME9_9ASTR); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I " 3 6 5 20 opLeV0100000015 sgn|U227598 CAAGACACCCTTTTCCCCCTTTTGCCACTAGTGGTGATTGTGGCAGTGGGTTTTTACTCATCTTTTGTTG Experimental SGN-U584655 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|79481791|ref|NP_193944.2| (e_value=0) ATP; (*ATH) AT4G22130.1 (e_value=0) Symbol: None | similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:At3g14350.2); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:At1g53730.1); similar ... ; (*SWP) sp|Q6R2J8|SRF8_ARATH (e_value=0) Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8; Solyc02g081070.2.1 genomic_reference:SL2.40ch02 gene_region:39719636-39726654 transcript_region:SL2.40ch02:39719636..39726654+ go_terms:GO:0016301 functional_description:"Receptor like kinase, RLK" 3 4 5 20 opLeV0100000016 sgn|U218648 GGTGGCTGAGTCATCTTCTAGCCTCAATTTCTCCGATCCCGGCCGATTTTATGCTGCCGAGTTCAAGGAA Experimental SGN-U568389 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157335542|emb|CAO61372.1| (e_value=4e-58) unnamed; (*ATH) AT4G36930.1 (e_value=1e-33) | Symbol: None | basic helix-loop-helix (bHLH) protein SPATULA (SPT), identical to SPATULA (SPT) GI:11245493 from (Arabidopsis thaliana) | chr4:17414124-17416291 FORWARD | Aliases: AP22.25, AP22_25; (*SWP) sp|Q9FUA4|SPT_ARATH (e_value=1e-32) Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT; Solyc04g078690.2.1 genomic_reference:SL2.40ch04 gene_region:60978513-60983322 transcript_region:SL2.40ch04:60978513..60983322+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B6TXR4_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH " 3 8 9 20 opLeV0100000017 sgn|U226366 TGCATGTGGAGCCCTCAGGTACTAGCCAGTGCCCCATTGCAGAGGAAACTTCTGCCTCCATCTCTCATGA Experimental SGN-U584440 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|156106716|gb|ABU49591.1| (e_value=0) CDC5-like; (*ATH) AT1G09770.1 (e_value=0) | Symbol: None | myb family transcription factor, contains Pfam profile: PF00249 myb-like DNA-binding domain | chr1:3161843-3165362 FORWARD | Aliases: F21M12.15, F21M12_15; (*SWP) sp|A7SD85|CDC5L_NEMVE (e_value=1e-172) Cell division cycle 5-related protein OS=Nematostella vectensis GN=cdc5l; Solyc04g009950.2.1 genomic_reference:SL2.40ch04 gene_region:3261269-3266696 transcript_region:SL2.40ch04:3261269..3266696+ go_terms:GO:0019904 functional_description:"Pre-mRNA splicing factor (AHRD V1 **-- C5K279_AJEDS); contains Interpro domain(s) IPR015495 Myb transcription factor " 3 6 9 20 opLeV0100000018 sgn|U242180 GACTATTAACCACTAGGACCATGAGAAAGGAAAGATAGTTCACACAGGTAGCAGCAATACATGATCTGAT Experimental SGN-U601315 Tomato 200607#2 [1 ESTs aligned] Solyc08g067970.2.1 genomic_reference:SL2.40ch08 gene_region:54233326-54235015 transcript_region:SL2.40ch08:54233326..54235015- functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *-*- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 " 3 4 9 20 opLeV0100000019 sgn|U217703 GACCATCCAAATTAAGCCTCAATGGATAAAAGACAACGGGAAAGACAAGCATTAGGTGGGCAGCATAGCT Experimental SGN-U570012 Tomato 200607#2 [43 ESTs aligned] (*GB) gi|157341332|emb|CAO49239.1| (e_value=0) unnamed; (*ATH) AT3G30390.1 (e_value=2e-172) Symbol: None | amino acid transporter family protein, low similarity to neuronal glutamine transporter (Rattus norvegicus) GI:6978016; belongs to INTERPRO:IPR002422 amino acid/polyamine transporter, family II | chr3:11979316-11982100 REVERSE | Alias... ; (*SWP) sp|Q28HE5|S38A6_XENTR (e_value=2e-26) Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6; Solyc02g065680.2.1 genomic_reference:SL2.40ch02 gene_region:31420560-31423989 transcript_region:SL2.40ch02:31420560..31423989+ functional_description:"Amino acid transporter (AHRD V1 ***- B9N1V7_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane " 3 2 9 20 opLeV0100000020 sgn|U220446 AGGACTGTCTTTGGCTAATAGAATCAAGCTGTATTATTATGCCGATCCCTACGAGCTCGGAAAATGGGCG Experimental SGN-U568375 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157353780|emb|CAO46312.1| (e_value=1e-140) unnamed; (*ATH) AT3G59770.2 (e_value=8e-122) Symbol: None | similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:At1g17340.1); similar to P0458A05.20 [Oryza sativa (japonica cultivar-group)] (GB:NP_918862.1); contains InterPro domain Synaptojanin, N-terminal (Int... ; Solyc08g044410.1.1 evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:32209997-32210332 transcript_region:SL2.40ch08:32209997..32210332+ functional_description:"SAC domain protein 9 (AHRD V1 ***- Q7XZU0_ARATH)" 1 8 2 20 opLeV0100000021 sgn|U215504 AAACCACGTATGCTTTAGTAAGGACTGTGAATGGCTTCTGTTCACGGGCAACTTGGGTGGAGTAACAGCA Experimental SGN-U594307 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157350240|emb|CAO40178.1| (e_value=1e-49) unnamed; (*ATH) AT4G01870.1 (e_value=1e-45) | Symbol: None | tolB protein-related, contains weak similarity to TolB protein precursor (Swiss-Prot:P44677) (Haemophilus influenzae) | chr4:808376-810446 REVERSE | Aliases: T7B11.13, T7B11_13; Solyc06g009350.2.1 genomic_reference:SL2.40ch06 gene_region:3292002-3292906 transcript_region:SL2.40ch06:3292002..3292906- functional_description:"Unknown Protein (AHRD V1)" 1 6 2 20 opLeV0100000022 sgn|U220923 AATGGAGAAGAAGAAAATGGCAGCTATAGCTATGGTGTTCATCATCCTTTCATCGGCCAATATCGACACG Experimental SGN-U566576 Tomato 200607#2 [11 ESTs aligned] Solyc01g104710.2.1 genomic_reference:SL2.40ch01 gene_region:84877025-84878082 transcript_region:SL2.40ch01:84877025..84878082- functional_description:"Unknown Protein (AHRD V1)" 1 4 2 20 opLeV0100000023 sgn|U231224 ATGGATCACTCCATTGCGAGTGGAATAGGGACACCTATGTATGGACCACTTCAGATTAGCAAGGCTGAAC Experimental SGN-U565801 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|30697428|ref|NP_200884.2| (e_value=5e-55) expressed protein [Arabidopsis thaliana]; (*ATH) AT5G60760.1 (e_value=4e-57) | Symbol: None | 2-phosphoglycerate kinase-related, contains weak similarity to 2-phosphoglycerate kinase (GI:467751) (Methanothermus fervidus) | chr5:24455497-24459513 FORWARD | Aliases: MAE1.1, MAE1_1; Solyc11g069780.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51488633-51493806 transcript_region:SL2.40ch11:51488633..51493806- functional_description:"2-phosphoglycerate kinase (AHRD V1 *-*- D9PV08_METTM)" 1 2 2 20 opLeV0100000024 sgn|U221198 AGCCATTGAACTTGCAAAGTTCTCAGCCTCAACAGCAGCAAGGGCCACAAGGCCAGGGCTTCCAAAATCA Experimental SGN-U572881 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157342013|emb|CAO63469.1| (e_value=3e-16) unnamed; (*ATH) AT5G47010.1 (e_value=4e-13) | Symbol: None | RNA helicase, putative, similar to type 1 RNA helicase pNORF1 (Homo sapiens) GI:1885356 | chr5:19089236-19096561 FORWARD | Aliases: MQD22.15, MQD22_15; (*SWP) sp|Q9FJR0|RENT1_ARATH (e_value=4e-12) Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1; Solyc08g007110.2.1 genomic_reference:SL2.40ch08 gene_region:1670182-1682050 transcript_region:SL2.40ch08:1670182..1682050+ go_terms:GO:0004004 functional_description:"ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain " 1 8 6 20 opLeV0100000025 sgn|U214618 TTTTGGTGGTTCAGATCGTAGTGGCGGTTTTGGTAATTCAAACCGGACTGGTGGCTTTGGAAACTTCGAG Experimental SGN-U571933 Tomato 200607#2 [44 ESTs aligned] (*GB) gi|147770303|emb|CAN60235.1| (e_value=0) hypothetical; (*ATH) AT3G22330.1 (e_value=1e-170) Symbol: None | DEAD box RNA helicase, putative, similar to RNA helicases GI:3775995, GI:3775987 from (Arabidopsis thaliana); contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain | chr3:7892623-7895373... ; (*SWP) sp|Q9LUW5|RH53_ARATH (e_value=1e-169) DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53; Solyc07g044760.2.1 genomic_reference:SL2.40ch07 gene_region:55130093-55135291 transcript_region:SL2.40ch07:55130093..55135291+ go_terms:GO:0003677 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-*- Q6L724_HORVU); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal " 1 6 6 20 opLeV0100000026 sgn|U222540 GAGGAAATGGATCACACAATCAATTTCAGGGAGGATGATGGAAGTTGTGAATGCCAATCTCTTTTCCGAG Experimental SGN-U579418 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157352154|emb|CAO43182.1| (e_value=2e-62) unnamed; (*ATH) AT3G47570.1 (e_value=5e-39) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, protein kinase Xa21 - Oryza sativa, PIR:A57676 | chr3:17538492-17541914 FORWARD | Aliases: F1P2.120; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=1e-32) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2; Solyc04g014900.2.1 genomic_reference:SL2.40ch04 gene_region:5145292-5147396 transcript_region:SL2.40ch04:5145292..5147396- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK" 1 4 6 20 opLeV0100000027 sgn|U214594 GGATGGGGAAGAGCCGCAAAGTTGGAATTCATTTCCATTGACAATGATGATGGCGGTATTTCGATGTCTC Experimental SGN-U571469 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|62241069|dbj|BAD93691.1| (e_value=1e-103) malonyltransferase MaT1 [Nicotiana tabacum]; (*ATH) AT3G29590.1 (e_value=1e-31) Symbol: None | transferase family protein, similar to anthocyanin 5-aromatic acyltransferase from Gentiana triflora GI:4185599, malonyl CoA:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase from Perilla frutescens GI:17980232, Salvia splendens GI:... ; (*SWP) sp|Q9ZWR8|ANTA_GENTR (e_value=2e-49) Anthocyanin 5-aromatic acyltransferase OS=Gentiana triflora; \N \N 1 2 6 20 opLeV0100000028 sgn|U217460 TATTGGCTCAAGAACTAAGGAGGGCTCTTACTCATAGGTGATCGATCCTGTTGAAGCGGGTACAGAATGG Experimental SGN-U572523 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|157335642|emb|CAO61472.1| (e_value=3e-119) unnamed; (*ATH) AT3G03990.1 (e_value=6e-113) Symbol: None | esterase/lipase/thioesterase family protein, low similarity to 3-oxoadipate enol-lactone hydrolase (Pseudomonas sp. B13) GI:17736948, esterase V (Pseudomonas sp.) GI:402521; contains Interpro entry IPR000379 | chr3:1033775-1034913 FOR... ; (*SWP) sp|O07015|RSBQ_BACSU (e_value=4e-40) Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis GN=rsbQ; Solyc04g077860.2.1 genomic_reference:SL2.40ch04 gene_region:60335672-60337954 transcript_region:SL2.40ch04:60335672..60337954- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein expressed (AHRD V1 **** Q10J20_ORYSJ); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 " 1 8 10 20 opLeV0100000029 sgn|U215738 CCGCGCTGGTGCTGCTGCTGTACTGTGATTTTCTTCCTGTTTCCCGTCTT Experimental SGN-U565605 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|74474915|dbj|BAE44441.1| (e_value=5e-49) dual specificity protein tyrosine phosphatase 1 [Solanum tuberosum]; (*ATH) AT3G23610.1 (e_value=1e-28) Symbol: None | dual specificity protein phosphatase (DsPTP1), identical to DsPTP1 protein GI:4150963 from (Arabidopsis thaliana); contains Pfam profile: PF00782 dual specificity phosphatase, catalytic domain | chr3:8478129-8479864 FORWARD | Aliases:... ; (*SWP) sp|Q9ESS0|DUS10_MOUSE (e_value=2e-19) Dual specificity protein phosphatase 10 OS=Mus musculus GN=Dusp10; \N \N 1 6 10 20 opLeV0100000030 sgn|U218351 GTTCTTTTGGAACTGGCAACATTGCTAACAGTGGCGAAGCAGTTGGGACAGGGTATGGACGAAACTCAGG Experimental SGN-U572252 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|147783406|emb|CAN75218.1| (e_value=2e-130) hypothetical; (*ATH) AT3G07810.1 (e_value=3e-122) | Symbol: None | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | chr3:2492279-2495756 FORWARD | Aliases: F17A17.15; (*SWP) sp|Q96DH6|MSI2H_HUMAN (e_value=1e-45) RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2; Solyc11g012470.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5302951-5305498 transcript_region:SL2.40ch11:5302951..5305498- go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 " 1 4 10 20 opLeV0100000031 sgn|U231976 TACTGAAACTGCGTCGTTTTGGCTGAAGATTTCTTAGGATTACAGTATTTTCCGATCTTCCTCACCAAAT Experimental SGN-U593675 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|44887630|gb|AAS48091.1| (e_value=3e-16) alcohol acyl transferase [Lycopersicon esculentum]; Solyc07g007130.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:1887074-1887550 transcript_region:SL2.40ch07:1887074..1887550- functional_description:"NHL repeat-containing protein (AHRD V1 **-- D7M6N9_ARALY)" 1 2 10 20 opLeV0100000032 sgn|U241985 AACAAGGGGCATGGGTTTGGATGTCCATTGCTCTGCCAATTTCGGCTCTTTTGCTTCTGCATCCCCCCTC Experimental SGN-U564923 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|5230656|gb|AAD40953.1|AF148934_1 (e_value=5e-171) phantastica; (*ATH) AT2G37630.1 (e_value=4e-116) | Symbol: None | myb family transcription factor (MYB91), contains Pfam profile: PF00249 myb-like DNA-binding domain | chr2:15788693-15790476 REVERSE | Aliases: F13M22.13, F13M22_13; (*SWP) sp|O80931|AS1_ARATH (e_value=4e-115) Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1; Solyc09g010840.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:4148534-4149616 transcript_region:SL2.40ch09:4148534..4149616- go_terms:GO:0003700,GO:0042803 functional_description:"Myb family transcription factor (AHRD V1 **-* D1LXI9_9ROSI); contains Interpro domain(s) IPR015495 Myb transcription factor " 3 8 2 20 opLeV0100000033 sgn|U236971 TGACACCTCCAATATCCCCCCAAGACGGCATCTATCAATCATGGACAAACTTCCAGGCTGAAGCAAATAC Experimental SGN-U599158 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|124359962|gb|ABN07978.1| (e_value=8e-36) GRAS; (*ATH) AT2G01570.1 (e_value=6e-17) | Symbol: None | gibberellin response modulator (RGA1) / gibberellin-responsive modulator, identical to GB:Y11336, member of SCARECROW family | chr2:255248-257549 REVERSE | Aliases: F2I9.19, F2I9_19; (*SWP) sp|Q6EI05|GAIPB_CUCMA (e_value=4e-17) DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB; \N \N 3 6 2 20 opLeV0100000034 sgn|U224672 GGCTACAGCGGAAGTGCAGAGCAGAGAGTGGTACGTCGCTAGTTATGCACCAATTGGTGTTCCCAATTCT Experimental SGN-U586467 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157348922|emb|CAO24000.1| (e_value=5e-92) unnamed; (*ATH) AT5G16970.1 (e_value=5e-43) Symbol: None | NADP-dependent oxidoreductase, putative (P1), identical to probable NADP-dependent oxidoreductase P1, zeta-crystallin homolog (SP:Q39172)(gi:886428), Arabidopsis thaliana; similar to allyl alcohol dehydrogenase (Nicotiana tabacum) GI:... ; (*SWP) sp|Q39172|P1_ARATH (e_value=4e-42) Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1; Solyc07g045080.2.1 genomic_reference:SL2.40ch07 gene_region:55517820-55520065 transcript_region:SL2.40ch07:55517820..55520065+ go_terms:GO:0032440,GO:0004022 functional_description:"Alcohol dehydrogenase zinc-containing (AHRD V1 **-* B4RDK4_PHEZH); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing " 3 4 2 20 opLeV0100000035 sgn|U232422 TACAAGTATTCTCATCTGTAATAGCAGCACTTACCCATGTCTCTACGTTACTCATATGCCACTGGAAATC Experimental SGN-U592158 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|7406663|emb|CAB85625.1| (e_value=5e-12) putative ripening-related protein [Vitis vinifera]; (*ATH) AT1G62770.1 (e_value=8e-12) Symbol: None | invertase/pectin methylesterase inhibitor family protein, similar to pectinesterase from Arabidopsis thaliana SP:Q42534, Lycopersicon esculentum SP:Q43143, Phaseolus vulgaris SP:Q43111; contains Pfam profile PF04043: Plant invertase/p... ; (*SWP) sp|P17407|21KD_DAUCA (e_value=1e-11) 21 kDa protein OS=Daucus carota; \N \N 3 2 2 20 opLeV0100000036 sgn|U232527 CAACAACAGAGCTTAGTCCCAATGAAGCAAACGGGTGCTACTTCTTCACA Experimental SGN-U586704 Tomato 200607#2 [1 ESTs aligned] Solyc04g054910.2.1 genomic_reference:SL2.40ch04 gene_region:52554444-52556186 transcript_region:SL2.40ch04:52554444..52556186+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding " 3 6 6 20 opLeV0100000037 sgn|U216816 CATGGAAGTTCACAGAGTTCCACAAGACACTTAGAGAGAGAGGACTGACTAGGCCATTCACTGGACTTGA Experimental SGN-U584773 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|157355320|emb|CAO48707.1| (e_value=0) unnamed; (*ATH) AT5G22350.1 (e_value=9e-84) | Symbol: None | expressed protein | chr5:7397426-7400940 REVERSE | Aliases: MWD9.14, MWD9_14; (*SWP) sp|Q9ZE28|Y120_RICPR (e_value=1e-16) Uncharacterized protein RP120 OS=Rickettsia prowazekii GN=RP120; Solyc11g068650.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50371286-50380603 transcript_region:SL2.40ch11:50371286..50380603+ functional_description:"Predicted nucleoside-diphosphate-sugar epimerase (AHRD V1 *--- B4RH55_PHEZH); contains Interpro domain(s) IPR009367 Protein of unknown function DUF1022 " 3 4 6 20 opLeV0100000038 sgn|U231123 TCACAGAAGCATTTGACGCAGCTTGCTTCCCACTTACACTCTTCTCTAGTTCATTTGATCCTGGCTGGGC Experimental SGN-U562711 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|62867584|emb|CAI84657.1| (e_value=0) hypothetical protein [Nicotiana tabacum]; (*ATH) AT2G44090.1 (e_value=0) | Symbol: None | expressed protein | chr2:18245436-18248369 REVERSE | Aliases: F6E13.22; Solyc08g015780.2.1 genomic_reference:SL2.40ch08 gene_region:5497369-5503211 transcript_region:SL2.40ch08:5497369..5503211- functional_description:"F-box/ankyrin repeat protein SKIP35 (AHRD V1 ***- SKI35_ARATH); contains Interpro domain(s) IPR002110 Ankyrin " 3 2 6 20 opLeV0100000039 sgn|U222941 CAGTTCCGAATTCGGTTCCAAGACAAAGTGATGTCCTGTCTTGGCCAGTTCCGAGTTCAGCTCCAAAACA Experimental SGN-U563933 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|110931702|gb|ABH02850.1| (e_value=3e-55) MYB; (*ATH) AT1G17520.1 (e_value=1e-49) | Symbol: None | DNA-binding protein, putative, contains similarity to DNA-binding protein PcMYB1 (Petroselinum crispum) gi:2224899:gb:AAB61699 | chr1:6024632-6027378 REVERSE | Aliases: F1L3.23, F1L3_23; Solyc03g121840.2.1 genomic_reference:SL2.40ch03 gene_region:63928744-63935288 transcript_region:SL2.40ch03:63928744..63935288- go_terms:GO:0005634,GO:0003677,GO:0045449 functional_description:"Histone H1-like protein (AHRD V1 *-*- Q8W119_MAIZE); contains Interpro domain(s) IPR005818 Histone H1/H5 " 3 8 10 20 opLeV0100000040 sgn|U237956 TATAATGGGGATATCAAGACCAGGAAGACTGTTCAGGCGGGGGAAGTTAATGAAGACCAGCTGGGGTTGC Experimental SGN-U574679 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|3127045|gb|AAC39455.1| (e_value=2e-128) bHLH transcription factor JAF13 [Petunia x hybrida]; (*ATH) AT5G41315.1 (e_value=1e-53) Symbol: None | basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain ;annotation temporarily based on supporting cDNA gi:17224394:gb:AF246291.1:AF246291 | chr5:16546685-16550094 FORWARD | Al... ; (*SWP) sp|Q9FN69|GL3_ARATH (e_value=1e-52) Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3; Solyc08g081140.2.1 genomic_reference:SL2.40ch08 gene_region:61386802-61391666 transcript_region:SL2.40ch08:61386802..61391666+ go_terms:GO:0003700,GO:0042802 functional_description:"Myc-like anthocyanin regulatory protein (AHRD V1 ***- Q675M5_9ASTE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH " 3 6 10 20 opLeV0100000041 sgn|U214335 AAGGTTTAGTTGTTGAATAGGAGGGATACGTTTTGTAGCTCGCGGGGACTTGCATCGGCCCCCTTCGATT Experimental SGN-U574049 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|118489135|gb|ABK96374.1| (e_value=2e-57) unknown; (*ATH) AT2G26280.1 (e_value=3e-59) Symbol: None | smr (Small MutS Related) domain-containing protein, weak similarity to PRLI-interacting factor N (Arabidopsis thaliana) GI:11139276; contains Pfam profile PF01713: Smr domain | chr2:11194811-11198415 REVERSE | Aliases: T1D16.8, T1D16_... ; Solyc08g061320.2.1 genomic_reference:SL2.40ch08 gene_region:45711690-45716597 transcript_region:SL2.40ch08:45711690..45716597- go_terms:GO:0005515 functional_description:"Smr domain containing protein (AHRD V1 ***- B6SWQ7_MAIZE); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal " 3 4 10 20 opLeV0100000042 sgn|U220929 ATTTTGGTGGAGCCAGTAACAAGGCATGTAGAAGAAAGGAGATGTAGTTCACTGGACGAAATAAACATCT Experimental SGN-U565305 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157339208|emb|CAO43749.1| (e_value=1e-27) unnamed; (*ATH) AT2G25870.1 (e_value=9e-26) Symbol: None | haloacid dehalogenase-like hydrolase family protein, contains Pfam profiles PF00702: haloacid dehalogenase-like hydrolase, PF02130: Uncharacterized protein family UPF0054 | chr2:11038193-11041532 FORWARD | Aliases: F17H15.10, F17H15_1... ; Solyc06g011570.2.1 genomic_reference:SL2.40ch06 gene_region:8117886-8119729 transcript_region:SL2.40ch06:8117886..8119729- go_terms:GO:0008270 functional_description:"Haloacid dehalogenase-like hydrolase-like (AHRD V1 ***- Q5JNL2_ORYSJ); contains Interpro domain(s) IPR002036 Uncharacterised protein family UPF0054 " 1 8 3 20 opLeV0100000043 sgn|U229125 AATGAGATAACCTTTTTGTGCTATTCGGATGTTGATGAGTCACAGCGTTGTGAAAGGCACCCAGATGGTC Experimental SGN-U571944 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157347896|emb|CAO22483.1| (e_value=2e-103) unnamed; (*ATH) AT1G03160.2 (e_value=2e-88) |; Solyc09g065160.2.1 genomic_reference:SL2.40ch09 gene_region:58667016-58680192 transcript_region:SL2.40ch09:58667016..58680192- go_terms:GO:0009228,GO:0005525 functional_description:"Dynamin family protein (AHRD V1 *--- D0MDN4_RHOM4); contains Interpro domain(s) IPR001401 Dynamin, GTPase region " 1 6 3 20 opLeV0100000044 sgn|U234941 CGATTCCCTTTGTACACCTTTGAATCTTCACCACCACCGGCGAAAAAAAG Experimental \N \N \N \N 1 4 3 20 opLeV0100000045 sgn|U228406 ATCTCTCTGATTGCCTTGTCTTTTTGGTCTTCACTTACGCAAGAGACCCTTTTCGAATTACGTGATGTGG Experimental SGN-U584523 Tomato 200607#2 [31 ESTs aligned] (*GB) gi|157343534|emb|CAO68040.1| (e_value=4e-166) unnamed; (*ATH) AT1G49050.1 (e_value=2e-152) | Symbol: None | aspartyl protease family protein, contains Pfam PF00026: Eukaryotic aspartyl protease; contains similarity to nucellin GI:2290203 from (Hordeum vulgare) | chr1:18154207-18157010 FORWARD | Aliases: F27J15.15, F27J15_15; (*SWP) sp|Q0IU52|ASP1_ORYSJ (e_value=8e-66) Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1; Solyc06g069190.2.1 genomic_reference:SL2.40ch06 gene_region:39347730-39352677 transcript_region:SL2.40ch06:39347730..39352677- go_terms:GO:0006508 functional_description:"Nucellin-like aspartic protease (Fragment) (AHRD V1 **-- Q8L886_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 " 1 2 3 20 opLeV0100000046 sgn|U213933 TGCAAAGGTTCAGGAGACGAATGGAGTGCTAAGCAACTCAAGGGTGATCTAGAAGCATCTGCTTCTTGTA Experimental SGN-U595645 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|38503544|gb|AAR22559.1| (e_value=2e-15) 60S acidic ribosomal protein P3 [Lactuca saligna]; (*ATH) AT5G57290.1 (e_value=1e-15) | Symbol: None | 60S acidic ribosomal protein P3 (RPP3B) | chr5:23224055-23225121 REVERSE | Aliases: MJB24.10, MJB24_10; (*SWP) sp|P56724|RLA3_ORYSJ (e_value=7e-16) 60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica GN=Os06g0701400; Solyc07g009330.2.1 genomic_reference:SL2.40ch07 gene_region:4378704-4380091 transcript_region:SL2.40ch07:4378704..4380091- go_terms:GO:0005840 functional_description:"60S acidic ribosomal protein P3 (AHRD V1 ***- B4G1B3_MAIZE); contains Interpro domain(s) IPR001813 Ribosomal protein 60S " 1 8 7 20 opLeV0100000047 sgn|U218427 TTTAAGCCCTAGAGACCTCAAGAATTTGGAAGGGAAACTTGAAAAGGCCATTGGTAGAGTCCGTTCCAAA Experimental SGN-U581068 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|24967135|gb|AAM33101.2| (e_value=3e-125) TAGL1 transcription factor [Lycopersicon esculentum]; (*ATH) AT3G58780.1 (e_value=3e-74) | Symbol: None | agamous-like MADS box protein AGL1 / shatterproof 1 (AGL1) (SHP1), identical to SP:P29381 Agamous-like MADS box protein AGL1 (Protein Shatterproof 1) {Arabidopsis thaliana} | chr3:21749437-21752884 FORWARD | Aliases: T20N10.130; (*SWP) sp|Q43585|AG_TOBAC (e_value=4e-74) Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1; Solyc07g055920.2.1 genomic_reference:SL2.40ch07 gene_region:61164844-61174720 transcript_region:SL2.40ch07:61164844..61174720+ go_terms:GO:0005515 functional_description:"Agamous MADS-box transcription factor (AHRD V1 **-- B2CDE2_9ASPA); contains Interpro domain(s) IPR002487 Transcription factor, K-box " 1 6 7 20 opLeV0100000048 sgn|U221253 AGCTCATCCTATCTCTGAGGGTTATATACTTGAGTAGGGCTGTTCAAAACCGAATCTAAACCGATAAGCC Experimental SGN-U566075 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147779006|emb|CAN73471.1| (e_value=1e-12) hypothetical; (*ATH) AT3G49250.1 (e_value=2e-12) | Symbol: None | expressed protein | chr3:18269246-18271983 REVERSE | Aliases: F2K15.110; Solyc03g083150.2.1 genomic_reference:SL2.40ch03 gene_region:46523748-46531708 transcript_region:SL2.40ch03:46523748..46531708+ functional_description:"Unknown Protein (AHRD V1)" 1 4 7 20 opLeV0100000049 sgn|U213032 GCCTTCACAGTCAATCTGGCAACTGGGGCAGCTGCCACCTTAGCGGATGCACCGGTGCTAACTCTGGAAC Experimental SGN-U591944 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|130271|sp|P17340|PLAS_SOLLC (e_value=8e-25) RecName:; (*ATH) AT1G76100.1 (e_value=1e-19) | Symbol: None | plastocyanin, identical to plastocyanin GI:1865683 from (Arabidopsis thaliana) | chr1:28558881-28559651 REVERSE | Aliases: T23E18.3, T23E18_3; (*SWP) sp|P17340|PLAS_SOLLC (e_value=6e-26) Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE; Solyc04g082010.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63418757-63419269 transcript_region:SL2.40ch04:63418757..63419269- go_terms:GO:0009055 functional_description:"Plastocyanin (AHRD V1 ***- Q0W9E5_SOLCO); contains Interpro domain(s) IPR000923 Blue (type 1) copper domain " 1 2 7 20 opLeV0100000050 sgn|U242184 TTATCTGAGCTTCAGTTGGTGTGACGCCTAATGGGTAGTACTTCCGCTGGTAGTATAGAGCAGCACCATC Experimental SGN-U583483 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|59798480|sp|Q9ZS62|PHYB1_LYCES (e_value=0) Phytochrome; (*ATH) AT2G18790.1 (e_value=2e-174) | Symbol: None | phytochrome B (PHYB), Identical to SP:P14713 Phytochrome B {Arabidopsis thaliana} | chr2:8146963-8151512 FORWARD | Aliases: MSF3.17, MSF3_17; (*SWP) sp|Q9ZS62|PHYB1_SOLLC (e_value=0) Phytochrome B1 OS=Solanum lycopersicum GN=PHYB1; Solyc01g059870.2.1 genomic_reference:SL2.40ch01 gene_region:61760931-61767869 transcript_region:SL2.40ch01:61760931..61767869- go_terms:GO:0042802,GO:0009883 functional_description:"Phytochrome B1" 1 8 11 20 opLeV0100000051 sgn|U228673 ACTGCCGCCGGAGAGTGGTCTTTGCCGGATGGGGAGTGGAACAAGTGTGATAATTGATGCTGAAAATGGT Experimental SGN-U573409 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|58982624|gb|AAW83473.1| (e_value=5e-164) RAV transcription factor [Capsicum annuum]; (*ATH) AT1G13260.1 (e_value=2e-105) | Symbol: None | DNA-binding protein RAV1 (RAV1), identical to SP:Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis thaliana}, RAV1 GI:3868857 from (Arabidopsis thaliana) | chr1:4542165-4543739 FORWARD | Aliases: T6J4.2, T6J4_2; (*SWP) sp|Q9ZWM9|RAV1_ARATH (e_value=2e-104) Ethylene-responsive transcription factor RAV1 OS=Arabidopsis thaliana GN=RAV1; Solyc05g009790.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:3987084-3988271 transcript_region:SL2.40ch05:3987084..3988271- go_terms:GO:0003677,GO:0016564 functional_description:"Transcription factor (AHRD V1 *-** D6MKM9_9ASPA); contains Interpro domain(s) IPR003340 Transcriptional factor B3 " 1 6 11 20 opLeV0100000052 sgn|U234273 CCTCCCAAATCGCCAACATAGACATCGCCACTTGGGGACCATTCATCAGGGTTATAAATAGGACTGTATC Experimental SGN-U592756 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147789486|emb|CAN71762.1| (e_value=1e-34) hypothetical; (*ATH) AT1G79040.1 (e_value=3e-30) Symbol: None | photosystem II 10 kDa polypeptide, identical to photosystem II 10 kDa polypeptide, chloroplast (precursor) SP:P27202 from (Arabidopsis thaliana); contains Pfam profile: PF04725 photosystem II 10 kDa polypeptide PsbR | chr1:29740911-29... ; (*SWP) sp|Q40519|PSBR_TOBAC (e_value=2e-33) Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR; Solyc12g017250.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:6437428-6440880 transcript_region:SL2.40ch12:6437428..6440880+ go_terms:GO:0042651 functional_description:"photosystem II polypeptide (AHRD V1 ***- Q6V7X5_TRIPR); contains Interpro domain(s) IPR006814 Photosystem II protein PsbR " 1 4 11 20 opLeV0100000053 sgn|U213641 TGCAGAACCGTGGGCCAATAGGAGGCTGTTGTGGTGTCATTAAAGATTTGCTTAAGCTTTGTAAGACACC Experimental SGN-U584460 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|4336999|gb|AAD18029.1| (e_value=2e-52) lipid transfer protein LTP1 precursor [Capsicum annuum]; (*ATH) AT2G38540.1 (e_value=1e-16) | Symbol: None | nonspecific lipid transfer protein 1 (LTP1), identical to SP:Q42589 | chr2:16137428-16138252 FORWARD | Aliases: T6A23.26, T6A23_26; (*SWP) sp|P93224|NLTP2_SOLLC (e_value=2e-37) Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16; Solyc10g075150.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:58198183-58199391 transcript_region:SL2.40ch10:58198183..58199391- go_terms:GO:0005516,GO:0005319 functional_description:"Non-specific lipid-transfer protein (AHRD V1 **** Q9ZPI9_CAPAN); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical " 1 2 11 20 opLeV0100000054 sgn|U217140 TCTTTCGGCAATACCTTTATCACCAATATTTACTCTGACGCCATTCTTCCCTGCATCTTGAACAAGCTTC Experimental SGN-U565075 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|209954693|dbj|BAG80537.1| (e_value=2e-51) putative; (*ATH) AT1G05530.1 (e_value=5e-31) | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr1:1636495-1637862 REVERSE | Aliases: T25N20.18; (*SWP) sp|Q9ZVY5|IABG2_ARATH (e_value=5e-30) Indole-3-acetate beta-glucosyltransferase 2 OS=Arabidopsis thaliana GN=UGT75B2; Solyc09g092490.2.1 genomic_reference:SL2.40ch09 gene_region:66911250-66912854 transcript_region:SL2.40ch09:66911250..66912854+ go_terms:GO:0010294 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI44_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase " 3 8 3 20 opLeV0100000055 sgn|U240836 CTCGCTGATTAGTGTAAATGCCTCAAAAAGACCTGCTAATGCCATCTGAGGTATTACCCATAGTCCTGAC Experimental SGN-U599308 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|11933414|dbj|BAB19760.1| (e_value=3e-39) nitrate transporter NRT1-5 [Glycine max]; (*ATH) AT3G47960.1 (e_value=3e-38) | Symbol: None | proton-dependent oligopeptide transport (POT) family protein, contains Pfam profile: PF00854 POT family | chr3:17708927-17711754 REVERSE | Aliases: T17F15.170; (*SWP) sp|Q9M817|PTR2X_ARATH (e_value=7e-17) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190; Solyc06g071570.2.1 genomic_reference:SL2.40ch06 gene_region:40451690-40454562 transcript_region:SL2.40ch06:40451690..40454562+ go_terms:GO:0080054,GO:0042936 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_BOVIN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region " 3 6 3 20 opLeV0100000056 sgn|U235151 CCTTTTTCTGCCACTCAAAAAAGGACCCGGGCCTCAATTGATTCCTCCCGCTTCCAATTCCCCTTAAAGA Experimental SGN-U583380 Tomato 200607#2 [3 ESTs aligned] \N \N 3 4 3 20 opLeV0100000057 sgn|U214534 GAACTACATAGAGCTTGGTATCGATATTGGCTCATCTACTGTGGCAAGGGGTGTTGTCAGCCTTGTTGTT Experimental SGN-U577361 Tomato 200607#2 [68 ESTs aligned] (*GB) gi|2326677|emb|CAA86613.1| (e_value=6e-81) late embryogenesis (Lea)-like protein [Lycopersicon esculentum]; (*ATH) AT5G53560.1 (e_value=2e-49) | Symbol: None | cytochrome b5 isoform 1, identical to SP:Q42342 Cytochrome b5 isoform 1 (Arabidopsis thaliana) | chr5:21776637-21777804 FORWARD | Aliases: MNC6.10, MNC6_10; (*SWP) sp|P46519|LEA14_SOYBN (e_value=4e-55) Desiccation protectant protein Lea14 homolog OS=Glycine max; Solyc11g069530.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51224817-51234971 transcript_region:SL2.40ch11:51224817..51234971- functional_description:"Kinase-START 1 (Fragment) (AHRD V1 *--- B9UY89_LOPEL); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 " 3 2 3 20 opLeV0100000058 sgn|U216967 GAAAGGGGTTCCACTTACAACAGAGAGCTTAGATCCCCAGGGTCTCTATCTCTTTGATGATGGTTTCCGG Experimental SGN-U571604 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|30680129|ref|NP_187366.2| (e_value=0) protein transport protein Sec24, putative [Arabidopsis thaliana]; (*ATH) AT3G07100.1 (e_value=0) | Symbol: None | protein transport protein Sec24, putative, similar to protein transport protein Sec24A (SEC24-related protein) (Homo sapiens) SWISS-PROT:O95486 | chr3:2245170-2250700 REVERSE | Aliases: T1B9.25; (*SWP) sp|Q9SFU0|SC24A_ARATH (e_value=0) Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100; Solyc02g082220.2.1 genomic_reference:SL2.40ch02 gene_region:40489732-40500986 transcript_region:SL2.40ch02:40489732..40500986+ go_terms:GO:0005515 functional_description:"Protein transport protein SEC24 (AHRD V1 ***- C5FL43_NANOT); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region " 3 8 7 20 opLeV0100000059 sgn|U232570 TTTCTCGCCGGTTAACCGCTGATTTTCTATGGGGTACATCCGATCTGAAC Experimental SGN-U591799 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|22074046|gb|AAK95687.1| (e_value=8e-77) transcription factor JERF1 [Lycopersicon esculentum]; (*ATH) AT3G14230.3 (e_value=6e-31) Symbol: None | encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. | chr3:4737... ; (*SWP) sp|Q9LUM4|RAP22_ARATH (e_value=2e-29) Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2; Solyc06g063070.2.1 genomic_reference:SL2.40ch06 gene_region:36207061-36209812 transcript_region:SL2.40ch06:36207061..36209812- go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 ***- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding " 3 6 7 20 opLeV0100000060 sgn|U240822 AAAGCTCGCGGTACTTAGCGAATTGCTCTCGTAGCCTCTTTATTCCTGTCAAGCGAACTGTAAATCATTC Experimental SGN-U582811 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|18401882|ref|NP_566609.1| (e_value=3e-78) expressed protein [Arabidopsis thaliana]; (*ATH) AT3G18420.1 (e_value=2e-80) | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, contains Pfam profile: PF00515 tetratricopeptide repeat domain (TPR domain) | chr3:6324639-6325799 REVERSE | Aliases: MYF24.14; Solyc01g008160.2.1 genomic_reference:SL2.40ch01 gene_region:2304525-2306017 transcript_region:SL2.40ch01:2304525..2306017- go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat-containing protein (AHRD V1 ***- D7L8H9_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical " 3 4 7 20 opLeV0100000061 sgn|U213524 TGTACCTAGAGCCTTTCTATTCACTTTTCTCGATAACAGCTGTTCAAATCAGTTTGCGTGCATCTAATAC Experimental SGN-U583838 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|3986117|dbj|BAA34923.1| (e_value=5e-15) 1-aminocyclopropane-1-carboxylate synthase [Lycopersicon esculentum]; \N \N 3 2 7 20 opLeV0100000062 sgn|U219219 GGTTGAAAGGGTGGTAAATATGCGGAAGCTGGCTCCTCCTGCTAAGCAAGATAATAAACATTCTCCCCGT Experimental SGN-U572660 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|145330705|ref|NP_001078028.1| (e_value=6e-78) unknown; (*ATH) AT2G40070.2 (e_value=4e-80) |; \N \N 3 8 11 20 opLeV0100000063 sgn|U216315 GGCGGAAGAATTAGAAACTTCGCTGCTAAATAAGAAAGATTACTACGAGAATTGTCCGGGTTGTAAAGTA Experimental SGN-U563953 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|157353687|emb|CAO46211.1| (e_value=0) unnamed; (*ATH) AT5G13750.1 (e_value=3e-165) | Symbol: None | transporter-related | chr5:4438203-4441524 FORWARD | Aliases: MXE10.2, MXE10_2; (*SWP) sp|P25351|YCR3_YEAST (e_value=2e-21) Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae GN=YCR023C; Solyc01g096730.2.1 genomic_reference:SL2.40ch01 gene_region:79501572-79508162 transcript_region:SL2.40ch01:79501572..79508162- go_terms:GO:0005351 functional_description:"Major facilitator superfamily transporter (AHRD V1 **-- A8NUY3_COPC7); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter " 3 6 11 20 opLeV0100000064 sgn|U218856 CCGGAGAAATGCCTCCAAAAAGGTCAACAAGTCACTCGCTGTGTTCTTAGCCTGTTGAAGGATCTTCATC Experimental SGN-U577174 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|118483508|gb|ABK93652.1| (e_value=2e-42) unknown; (*ATH) AT5G18800.1 (e_value=1e-43) | Symbol: None | NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein, contains Pfam profile: PF05850 NADH-ubiquinone oxidoreductase 19 kDa subunit | chr5:6267080-6268616 FORWARD | Aliases: F17K4.50, F17K4_50; Solyc08g080240.2.1 genomic_reference:SL2.40ch08 gene_region:60728099-60731334 transcript_region:SL2.40ch08:60728099..60731334+ go_terms:GO:0008137 functional_description:"NADH ubiquinone dehydrogenase (AHRD V1 **** B0X766_CULQU); contains Interpro domain(s) IPR010625 CHCH " 3 4 11 20 opLeV0100000065 sgn|U220722 ACAAGCGCCTAGGACGCTGATCCATTGGTAACAGCACAACACGTGATGTGTGGTTTAGGTGCACGTCACG Experimental SGN-U580737 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157348917|emb|CAO23995.1| (e_value=8e-46) unnamed; (*ATH) AT1G05180.2 (e_value=4e-46) Symbol: None | auxin-resistance protein AXR1 (AXR1), identical to SP:P42744 Auxin-resistance protein AXR1 {Arabidopsis thaliana}; contains Pfam profile PF00899: ThiF family; identical to cDNA ubiquitin activating enzyme E1-related protein (AXR1) GI:... ; (*SWP) sp|P42744|ULA1_ARATH (e_value=3e-45) NEDD8-activating enzyme E1 regulatory subunit OS=Arabidopsis thaliana GN=AXR1; \N \N 3 2 11 20 opLeV0100000066 sgn|U225519 TCTAGCTAGGTCCATAGTTACAATGATAATAGAGCAGTATCAAGTTGAGCTAATTCCCCCCATGAAGGTC Experimental SGN-U580617 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|15237742|ref|NP_200682.1| (e_value=2e-79) expressed protein [Arabidopsis thaliana]; (*ATH) AT5G58740.1 (e_value=1e-81) | Symbol: None | nuclear movement family protein, contains Pfam profile: PF03593 nuclear movement protein | chr5:23743000-23744792 REVERSE | Aliases: MZN1.18, MZN1_18; (*SWP) sp|Q9CQ48|NUDC2_MOUSE (e_value=5e-17) NudC domain-containing protein 2 OS=Mus musculus GN=Nudcd2; Solyc06g076940.2.1 genomic_reference:SL2.40ch06 gene_region:44208852-44212836 transcript_region:SL2.40ch06:44208852..44212836+ functional_description:"NudC domain-containing protein 2 (AHRD V1 ***- B6T1R3_MAIZE); contains Interpro domain(s) IPR017447 CS " 1 8 4 20 opLeV0100000067 sgn|U226036 AGAGTAAGGTTGCATCACCCTCACTACTGAAACCATATTTCTCACCAAGCCAAGTTCCCAAAATACAACA Experimental SGN-U579903 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|157355480|emb|CAO48870.1| (e_value=0) unnamed; (*ATH) AT3G08760.1 (e_value=2e-156) | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr3:2657924-2660833 REVERSE | Aliases: F17O14.23; (*SWP) sp|P43293|NAK_ARATH (e_value=6e-45) Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK; \N \N 1 6 4 20 opLeV0100000068 sgn|U216905 GCTGACCCTGCAAACAACAATGTCTTGACCAGCCTCAAGTTCCACTAAACAAGGAGCAAATCACCCTGTT Experimental SGN-U580836 Tomato 200607#2 [54 ESTs aligned] (*GB) gi|226872|prf||1609235A (e_value=1e-125) chlorophyll; (*ATH) AT1G61520.1 (e_value=7e-124) Symbol: None | chlorophyll A-B binding protein / LHCI type III (LHCA3.1), nearly identical to PSI type III chlorophyll a/b-binding protein GI:430947; contains Pfam profile: PF00504 chlorophyll A-B binding protein; similar to PSI type III chlorophyll... ; (*SWP) sp|P27522|CB13_SOLLC (e_value=3e-126) Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8; \N \N 1 4 4 20 opLeV0100000069 sgn|U225726 AGCTACATAAGGGTGTCTTTAGCGCCGCTGAGCAAATTAGAATAGTTAAATATGCGGAGAAGCTTGACCA Experimental SGN-U584838 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157354878|emb|CAO48224.1| (e_value=1e-91) unnamed; (*ATH) AT2G17970.1 (e_value=7e-77) | Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to At2g17960, At4g36090; contains PF03171 2OG-Fe(II) oxygenase superfamily domain | chr2:7826198-7828358 REVERSE | Aliases: T27K22.16, T27K22_16; Solyc02g083960.2.1 genomic_reference:SL2.40ch02 gene_region:41782529-41787702 transcript_region:SL2.40ch02:41782529..41787702- go_terms:GO:0016491 functional_description:"Oxidoreductase 2OG-Fe oxygenase family protein (AHRD V1 *--- B6ST02_MAIZE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase " 1 2 4 20 opLeV0100000070 sgn|U235066 AATACCCGCGGGAGGATTTCATGTGCACTAATATCCAAAGCCCCTGGATCCCGGCATAAGGTTTTGCCTT Experimental SGN-U601918 Tomato 200607#2 [1 ESTs aligned] (*ATH) AT1G04190.1 (e_value=4e-12) Symbol: None | tetratricopeptide repeat (TPR)-containing protein, low similarity to protein antigen LmSTI1 (Leishmania major) GI:1698880; contains Pfam profile PF00515 TPR Domain; EST gb:Z47802 and gb:Z48402 come from this gene | chr1:1106427-110870... ; Solyc09g082540.2.1 genomic_reference:SL2.40ch09 gene_region:63657303-63663270 transcript_region:SL2.40ch09:63657303..63663270+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 28 (AHRD V1 *--- TTC28_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical " 1 8 8 20 opLeV0100000071 sgn|U241768 GTGTAGTTATCCTAGTCAGGAGTACCAGTCAAACTTAACTCTGAAATTTTCTCCCAGTCTATGCAATACG Experimental SGN-U599861 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|145512523|ref|XP_001442178.1| (e_value=4e-67) hypothetical; \N \N 1 6 8 20 opLeV0100000072 sgn|U217213 TTCGTGGTCGAATTCCATGGTCGTTTCGTCTTATGATGTGTCTTCAATATCTATTTTTAGGCCTGACACG Experimental SGN-U568041 Tomato 200607#2 [9 ESTs aligned] \N \N 1 4 8 20 opLeV0100000073 sgn|U234301 AGCCCTTTACTTTATAAGGGACGCCCAGGTTGGATTAACGACTCTTAATTGATCTCCAGGTTTCGGATAA Experimental SGN-U595275 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|162532861|gb|ABY16785.1| (e_value=7e-22) auxin-repressed; (*ATH) AT1G28330.1 (e_value=4e-20) Symbol: None | dormancy-associated protein, putative (DRM1), identical to dormancy-associated protein (Arabidopsis thaliana) GI:2995990; similar to dormancy-associated protein GI:2605887 from (Pisum sativum); contains Pfam profile PF05564: Dormancy/... ; (*SWP) sp|Q05349|12KD_FRAAN (e_value=4e-15) Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa; \N \N 1 2 8 20 opLeV0100000074 sgn|U224431 GAACTTTGATTTCGGAGCGCAAAAGGAGAGGAAGAATGAAGGAAAAGCTTTACGCTTTGCGATCCTTAGT Experimental SGN-U585920 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|56694213|gb|AAW22875.1| (e_value=2e-152) bHLH transcriptional regulator [Lycopersicon esculentum]; (*ATH) AT2G28160.1 (e_value=9e-56) | Symbol: None | basic helix-loop-helix (bHLH) family protein | chr2:12011785-12013199 FORWARD | Aliases: F24D13.5, F24D13_5; Solyc06g051550.2.1 genomic_reference:SL2.40ch06 gene_region:31547113-31549026 transcript_region:SL2.40ch06:31547113..31549026- go_terms:GO:0003700,GO:0042802 functional_description:"Transcription Factor (AHRD V1 *-** Q84LF9_ORYSA); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH " 1 8 12 20 opLeV0100000075 sgn|U214704 GTATGATTGTCAACGACTGGGCAGCGTTTTGTGGGTCAGACACTACAGCAACAGAAGTGGCTGTTATCGA Experimental SGN-U591727 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15228161|ref|NP_191121.1| (e_value=2e-90) eukaryotic translation initiation factor 6 (EIF-6) - like protein [Arabidopsis thaliana]; (*ATH) AT3G55620.1 (e_value=1e-92) Symbol: EMB1624 | eukaryotic translation initiation factor 6, putative / eIF-6, putative, similar to SP:O55135 Eukaryotic translation initiation factor 6 (eIF-6) (B4 integrin interactor) {Mus musculus}; contains Pfam profile PF01912: eIF-6 family | ... ; (*SWP) sp|P56537|IF6_HUMAN (e_value=2e-76) Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6; Solyc12g010210.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3323271-3325146 transcript_region:SL2.40ch12:3323271..3325146- go_terms:GO:0042256 functional_description:"Translation initiation factor 6 (AHRD V1 ***- D3TPG6_GLOMM); contains Interpro domain(s) IPR002769 Translation initiation factor IF6 " 1 6 12 20 opLeV0100000076 sgn|U218078 GAGGAAACGTTGTAAGGGCCGCCCTTCAAATAAAGCGGGCTACAGAAATGGAAGATTGACATGTACCAAC Experimental SGN-U595808 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147802944|emb|CAN64036.1| (e_value=6e-18) hypothetical; (*ATH) AT4G34120.1 (e_value=4e-19) | Symbol: None | CBS domain-containing protein, contains Pfam profile PF00571: CBS domain | chr4:16341094-16343651 FORWARD | Aliases: F28A23.120, F28A23_120; Solyc02g093140.2.1 genomic_reference:SL2.40ch02 gene_region:48634790-48640565 transcript_region:SL2.40ch02:48634790..48640565- functional_description:"CBS domain-containing protein-like (AHRD V1 ***- B8AP73_ORYSI); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core " 1 4 12 20 opLeV0100000077 sgn|U228112 ACAGTTGTAAGATATATGCAGATCCGCATGTGGCAGCGCGATTCAAGGGATAGGACAGTGTTACAACCGA Experimental SGN-U576241 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157351909|emb|CAO42873.1| (e_value=0) unnamed; (*ATH) AT5G13480.1 (e_value=0) Symbol: None | similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:At5g67320.1); similar to putative FY protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87887.1); contains InterPro domain G-protein beta WD-40 repeat (InterPro:... ; (*SWP) sp|Q9C0J8|WDR33_HUMAN (e_value=9e-133) WD repeat-containing protein 33 OS=Homo sapiens GN=WDR33; Solyc08g067040.2.1 genomic_reference:SL2.40ch08 gene_region:53153910-53170013 transcript_region:SL2.40ch08:53153910..53170013+ go_terms:GO:0005515 functional_description:"Polyadenylation factor subunit 2 (AHRD V1 *--- D6RKS9_COPC7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region " 1 2 12 20 opLeV0100000078 sgn|U215241 GCCAGAGACCAGGTAAGAATCTCTCTGTTTTTCTTTCTTCAAAAAAATTAGGGTATGGATAGGGGAAGGG Experimental SGN-U581464 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157354761|emb|CAO48079.1| (e_value=5e-47) unnamed; (*ATH) AT4G18550.1 (e_value=3e-40) | Symbol: None | lipase class 3 family protein, similar to lipase (Dianthus caryophyllus) GI:4103627; contains Pfam profile PF01764: Lipase | chr4:10225017-10226873 REVERSE | Aliases: F28J12.210, F28J12_210; \N \N 3 8 4 20 opLeV0100000079 sgn|U214668 CCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTACCAACGGAATCAACTGAA Experimental SGN-U567466 Tomato 200607#2 [39 ESTs aligned] (*GB) gi|147806280|emb|CAN72193.1| (e_value=6e-96) hypothetical; (*ATH) AT5G59550.1 (e_value=1e-67) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) | chr5:24015485-24017019 REVERSE | Aliases: F2O15.22, F2O15_22; (*SWP) sp|Q9SPL2|CIP8_ARATH (e_value=5e-20) E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8; \N \N 3 6 4 20 opLeV0100000080 sgn|U220077 TGTTGATGCCTCTGGCAGGAAGGCCAAGGTTTGTTCTCATCTTGACACCT Experimental SGN-U580072 Tomato 200607#2 [6 ESTs aligned] \N \N 3 4 4 20 opLeV0100000081 sgn|U220185 GGTGCTGGCGCTGCTTTTATTGTTTTCACAGGCATCGTCTCTGAACTTTTCTACGTCAGCTATTCCAAGG Experimental SGN-U569941 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157327966|emb|CAO16930.1| (e_value=4e-53) unnamed; (*ATH) AT1G61065.1 (e_value=2e-50) | Symbol: None | expressed protein | chr1:22493909-22495126 REVERSE | Aliases: None; Solyc02g078630.2.1 genomic_reference:SL2.40ch02 gene_region:37852944-37856341 transcript_region:SL2.40ch02:37852944..37856341- functional_description:"Os10g0495900 protein (Fragment) (AHRD V1 *-*- Q0IWP8_ORYSJ); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 " 3 2 4 20 opLeV0100000082 sgn|U222437 GAAGGGCAGCATGACCATGACATCCCACCTTCCAGAACTGTTATCCAAAATACAGCAGAGGCTGATTCTA Experimental SGN-U567993 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|4322938|gb|AAD16138.1| (e_value=4e-117) DNA-binding protein 1 [Nicotiana tabacum]; (*ATH) AT2G04880.2 (e_value=2e-60) | Symbol: None | WRKY family transcription factor (ZAP1), identical to ZAP1 GI:1064883 from (Arabidopsis thaliana); contains Pfam profile: PF03106 WRKY DNA -binding domain | chr2:1717890-1720971 FORWARD | Aliases: None; (*SWP) sp|Q93WV0|WRK20_ARATH (e_value=3e-57) Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20; Solyc07g047960.2.1 genomic_reference:SL2.40ch07 gene_region:56499981-56504055 transcript_region:SL2.40ch07:56499981..56504055- go_terms:GO:0003700 functional_description:"WRKY transcription factor 2 (AHRD V1 **** C9DHZ1_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY " 3 8 8 20 opLeV0100000083 sgn|U235353 CCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTGTTTGCCCT Experimental \N \N \N \N 3 6 8 20 opLeV0100000084 sgn|U221572 GAAATTTGCTGAGGCTGCAACTGCTCTCAAAGAATTGGGGAGTCCGCTCTTGATGGCGAAGATTGATGCT Experimental SGN-U590139 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157340207|emb|CAO45884.1| (e_value=6e-85) unnamed; (*ATH) AT3G16110.1 (e_value=6e-81) | Symbol: ATPDIL1-6 | Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. | chr3:5460847-5463742 REVERSE | Aliases: MSL1.15, ATPDIL1-6, PDI-LIKE 1-6; (*SWP) sp|Q54EN4|PDI2_DICDI (e_value=2e-26) Protein disulfide-isomerase 2 OS=Dictyostelium discoideum GN=pdi2; Solyc03g120720.2.1 genomic_reference:SL2.40ch03 gene_region:63066502-63072695 transcript_region:SL2.40ch03:63066502..63072695+ go_terms:GO:0003756 functional_description:"Protein disulfide isomerase L-3b (AHRD V1 **** C6KXH6_SOYBN); contains Interpro domain(s) IPR013766 Thioredoxin domain " 3 4 8 20 opLeV0100000085 sgn|U227414 GCCTTGCTGATGAAGTTTGCACTGCTTTGCAGCATGGAATCAAGCCAACAGGCGTTGCTGTGGTTCTACA Experimental SGN-U565099 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|17979018|gb|AAL49957.1| (e_value=0) GTP cyclohydrolase I [Lycopersicon esculentum]; (*ATH) AT3G07270.1 (e_value=1e-150) | Symbol: None | GTP cyclohydrolase I, identical to GTP cyclohydrolase I GI:19909132 from (Arabidopsis thaliana); contains Pfam profile: PF01227 GTP cyclohydrolase I | chr3:2315083-2317194 FORWARD | Aliases: T1B9.6; (*SWP) sp|Q94465|GCH1_DICDI (e_value=1e-30) GTP cyclohydrolase 1 OS=Dictyostelium discoideum GN=gchA; Solyc06g083230.2.1 genomic_reference:SL2.40ch06 gene_region:45029876-45033174 transcript_region:SL2.40ch06:45029876..45033174- go_terms:GO:0003934 functional_description:"GTP cyclohydrolase I (AHRD V1 **** Q8VYU3_SOLLC); contains Interpro domain(s) IPR001474 GTP cyclohydrolase I " 3 2 8 20 opLeV0100000086 sgn|U212757 GCGAAAACAAGAAATATTTACCTTCAAGAAATGAGTTGCTTGCCAAATTCAAAGCTCGCATTCTAGCTGC Experimental SGN-U578895 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|60459397|gb|AAX20044.1| (e_value=6e-91) probable; (*ATH) AT3G09270.1 (e_value=1e-50) | Symbol: None | glutathione S-transferase, putative, similar to glutathione transferase GB:CAA71784 (Glycine max) | chr3:2848295-2849293 REVERSE | Aliases: F3L24.14; (*SWP) sp|P32111|GSTX1_SOLTU (e_value=3e-83) Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1; Solyc09g011550.2.1 genomic_reference:SL2.40ch09 gene_region:4837594-4838668 transcript_region:SL2.40ch09:4837594..4838668+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase-like protein (AHRD V1 **** A8DUB0_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal " 3 8 12 20 opLeV0100000087 sgn|U230582 TCGCCCTTAGTTGCCAGAGAAACATCAGCTGAAGTGGAGATTGGAGGCTATAAACTTCCCAAGGGAACAT Experimental SGN-U569594 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147866671|emb|CAN83678.1| (e_value=3e-52) hypothetical; (*ATH) AT2G26170.1 (e_value=2e-48) Symbol: MAX1 | Encodes a protein with similarity to thromboxane-A synthase, putative member of cytochrome P450 family. MAX1 is expressed in the vasculature throughout the plant body.Mutants have increased axillary branches. Along with MAX3,4 though... ; (*SWP) sp|Q2KIG5|THAS_BOVIN (e_value=2e-14) Thromboxane-A synthase OS=Bos taurus GN=TBXAS1; Solyc08g062950.2.1 genomic_reference:SL2.40ch08 gene_region:49585014-49587278 transcript_region:SL2.40ch08:49585014..49587278- go_terms:GO:0009055 functional_description:"Cytochrome P450" 3 6 12 20 opLeV0100000088 sgn|U215078 CATCGCCTCCATATCTCTCACTTCTCCTCTGCCTCATCCTTTGCTATGTCAACCTTAGCTTCATCTCCAT Experimental SGN-U570055 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|6467903|gb|AAF13231.1| (e_value=5e-101) pollen specific LIM domain protein 1a [Nicotiana tabacum]; (*ATH) AT1G10200.1 (e_value=1e-85) Symbol: None | transcription factor LIM, putative, strong similarity to transcription factor Ntlim1 (Nicotiana tabacum) GI:5689136, LIM domain protein WLIM-1 (Helianthus annuus) GI:5070280; contains Pfam profile PF00412: LIM domain | chr1:3346392-33... ; (*SWP) sp|P29675|SF3_HELAN (e_value=2e-80) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3; \N \N 3 4 12 20 opLeV0100000089 sgn|U230521 TGTGAGTATTTCCCCTCTGAAAAAGACGAGACTTATCGCTATGAAGGATGCATCATTCATGACGGATGAT Experimental SGN-U567456 Tomato 200607#2 [2 ESTs aligned] Solyc12g010700.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3630935-3632819 transcript_region:SL2.40ch12:3630935..3632819- functional_description:"IST1 homolog (AHRD V1 *--- C1BSR8_9MAXI); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic " 3 2 12 20 opLeV0100000090 sgn|U213099 CTCATGCAAGGCGTAAGCACCGGCAGCAACAGCACCAAGTTCACCAATTTTCTGGAGATGGCTATGGTGC Experimental SGN-U593074 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|152031562|sp|P37220|ASR3_SOLLC (e_value=6e-33) Abscisic; (*SWP) sp|P37220|ASR3_SOLLC (e_value=4e-34) Abscisic stress-ripening protein 3 OS=Solanum lycopersicum GN=ASR3; Solyc04g071590.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:56145566-56146368 transcript_region:SL2.40ch04:56145566..56146368+ go_terms:GO:0006950 functional_description:"Abscisic stress ripening (Fragment) (AHRD V1 *--- D1MEA2_MUSAC); contains Interpro domain(s) IPR003496 ABA/WDS induced protein " 1 3 1 20 opLeV0100000091 sgn|U220095 CCCAATGCTAGAGCTGCTACCTTTCAGCTGATGAACATGAGCATCCAGTTTCTTGAAGTCTACATTAGAC Experimental SGN-U574117 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|157359869|emb|CAO68598.1| (e_value=1e-56) unnamed; (*ATH) AT3G21510.1 (e_value=4e-52) | Symbol: None | two-component phosphorelay mediator 3 (HP3), identical to ATHP3 (Arabidopsis thaliana) GI:4156245 | chr3:7578181-7579603 REVERSE | Aliases: MIL23.7; (*SWP) sp|Q9ZNV9|AHP1_ARATH (e_value=4e-51) Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1; Solyc01g098400.2.1 genomic_reference:SL2.40ch01 gene_region:80683099-80684846 transcript_region:SL2.40ch01:80683099..80684846- go_terms:GO:0009927 functional_description:"Histidine phosphotransfer protein (AHRD V1 **** B9I823_POPTR); contains Interpro domain(s) IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) region " 1 1 1 20 opLeV0100000092 sgn|U222294 AAAAAAGATGCTTGGACTCTGGAGGAGGAACGGGCGCTTATAGATGCTCATCGGATCCATGGTAACAAGT Experimental SGN-U566408 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|31980091|emb|CAD98760.1| (e_value=2e-99) MYB transcription factor R3 type [Populus tremula x Populus tremuloides]; (*ATH) AT5G02320.1 (e_value=2e-93) Symbol: None | myb family transcription factor (MYB3R5), contains Pfam profile: PF00249 myb-like DNA binding domain; identical to cDNA putative c-myb-like transcription factor MYB3R-5 (MYB3R5) GI:15375300 | chr5:483121-486432 REVERSE | Aliases: T1E2... ; (*SWP) sp|Q9S7G7|MB3R1_ARATH (e_value=8e-71) Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1; Solyc09g010820.2.1 genomic_reference:SL2.40ch09 gene_region:4108171-4115660 transcript_region:SL2.40ch09:4108171..4115660+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q6R032_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor " 1 7 5 20 opLeV0100000093 sgn|U224571 CTTTGAAGGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTG Experimental SGN-U571104 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|147782706|emb|CAN63863.1| (e_value=5e-98) hypothetical; (*ATH) AT1G78780.2 (e_value=8e-97) | Symbol: None | pathogenesis-related family protein, contains similarity to pathogen-related protein (GI:499073) (Swiss-Prot:P16273) (Hordeum vulgare) | chr1:29626237-29627338 REVERSE | Aliases: None; (*SWP) sp|P16273|PRPX_HORVU (e_value=7e-54) Pathogen-related protein OS=Hordeum vulgare; Solyc12g014310.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5129574-5133435 transcript_region:SL2.40ch12:5129574..5133435- functional_description:"Pathogenesis-related protein-like protein (AHRD V1 ***- Q8L9B0_ARATH)" 1 5 5 20 opLeV0100000094 sgn|U237631 ATGAAATGCTGAGGGCTTGAGACAGTAATCTTTTCCCCTGCTGCTTAGTGTGCATTGCAGGATTCAGGAT Experimental SGN-U601548 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157327728|emb|CAO16155.1| (e_value=2e-22) unnamed; (*ATH) AT4G16745.1 (e_value=4e-20) | Symbol: None | exostosin family protein, contains Pfam PF03016: Exostosin family | chr4:9411914-9414133 FORWARD | Aliases: None; Solyc08g078450.2.1 genomic_reference:SL2.40ch08 gene_region:59419628-59422333 transcript_region:SL2.40ch08:59419628..59422333- go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 ***- D7MCC1_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like " 1 3 5 20 opLeV0100000095 sgn|U225406 GGATGATGGTGTTGCTCGTCTGACAGGGGGAAATGAATCTTCTTCGGGATATGAGAGTGAAGATAGCTCT Experimental SGN-U572543 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157360023|emb|CAO68771.1| (e_value=1e-20) unnamed; Solyc02g063280.2.1 genomic_reference:SL2.40ch02 gene_region:29931694-29934377 transcript_region:SL2.40ch02:29931694..29934377+ functional_description:"Unknown Protein (AHRD V1)" 1 1 5 20 opLeV0100000096 sgn|U221642 TCTAATTCCTCTAATTCTCAACTCACTGCAATTATCACTGGCGCAACATCAGGGATTGGAGCAGAAACAG Experimental SGN-U585804 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|18423110|ref|NP_568721.1| (e_value=8e-118) short-chain dehydrogenase/reductase family protein [Arabidopsis thaliana]; (*ATH) AT5G50130.1 (e_value=5e-120) | Symbol: None | short-chain dehydrogenase/reductase (SDR) family protein, contains INTERPRO family IPR002198 Short-chain dehydrogenase/reductase (SDR) superfamily | chr5:20407241-20410489 FORWARD | Aliases: MPF21.15, MPF21_15; (*SWP) sp|P59837|RDH12_BOVIN (e_value=5e-44) Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12; Solyc03g112540.2.1 genomic_reference:SL2.40ch03 gene_region:56984597-56988917 transcript_region:SL2.40ch03:56984597..56988917+ go_terms:GO:0004745,GO:0046983 functional_description:"Retinol dehydrogenase 12 (AHRD V1 **-* B6UB33_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase " 1 7 9 20 opLeV0100000097 sgn|U232704 AATACACAGTCACCACAACTTGGGGTGAAGATTGATTACATAGATGTGGAAGCTCCGAGCAGATAACTTC Experimental SGN-U580676 Tomato 200607#2 [6 ESTs aligned] Solyc02g088960.2.1 genomic_reference:SL2.40ch02 gene_region:45455713-45461673 transcript_region:SL2.40ch02:45455713..45461673+ functional_description:"Unknown Protein (AHRD V1)" 1 5 9 20 opLeV0100000098 sgn|U220991 CCTCGGGTACTACTTTATCACCGACAGCTGGGACATGTCTGATCTCGGAAGCGGGTGGTGGAGCCCTCTG Experimental SGN-U564047 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157338379|emb|CAO39423.1| (e_value=9e-60) unnamed; (*ATH) AT3G14860.1 (e_value=1e-33) | Symbol: None | NHL repeat-containing protein, contains Pfam profile PF01436: NHL repeat | chr3:4998364-5000988 REVERSE | Aliases: T21E2.13; Solyc07g062300.2.1 genomic_reference:SL2.40ch07 gene_region:62286368-62290258 transcript_region:SL2.40ch07:62286368..62290258- functional_description:"NHL repeat-containing protein (AHRD V1 ***- D7L380_ARALY); contains Interpro domain(s) IPR001258 NHL repeat " 1 3 9 20 opLeV0100000099 sgn|U219510 AGGAGCTTGAAGGGATAGTGAAAGAAGCGAATGTGAGGAAGCATAAGATCCGGCCGGTTGGGTCGGGTTT Experimental SGN-U585649 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|22761943|dbj|BAC11758.1| (e_value=0) L-galactono-1,4-lactone dehydrogenase [Lycopersicon esculentum]; (*ATH) AT3G47930.1 (e_value=0) Symbol: None | L-galactono-1,4-lactone dehydrogenase, putative, strong similarity to L-galactono-1,4-lactone dehydrogenase, Brassica oleracea, Z97060 (gi:2760543), and gi:3986289 from Ipomea batatas | chr3:17695429-17698605 FORWARD | Aliases: T17F15... ; (*SWP) sp|Q90YK3|GGLO_SCYTO (e_value=3e-38) L-gulonolactone oxidase OS=Scyliorhinus torazame GN=GULO; Solyc10g079470.2.1 genomic_reference:SL2.40ch10 gene_region:60341212-60348821 transcript_region:SL2.40ch10:60341212..60348821- go_terms:GO:0016633,GO:0080049 functional_description:"L-galactono-1,4-lactone dehydrogenase" 1 1 9 20 opLeV0100000100 sgn|U221907 CTGGTATCTCCACGAGGGAGGTCAACGTTGACACGCATTTGAACTTATGCTGCTTGTATTTGTCCCTCAC Experimental SGN-U568258 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|1064931|emb|CAA63541.1| (e_value=7e-57) cyclin; (*ATH) AT1G47230.2 (e_value=3e-38) Symbol: None | cyclin, putative, similar to cyclin A-like protein (Nicotiana tabacum) GI:1064931, A-type cyclin (Catharanthus roseus) GI:2190259; contains Pfam profiles PF00134: Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal domain | chr1:17... ; (*SWP) sp|P25010|CCNAL_DAUCA (e_value=5e-41) G2/mitotic-specific cyclin C13-1 (Fragment) OS=Daucus carota; Solyc04g078310.2.1 genomic_reference:SL2.40ch04 gene_region:60660616-60662496 transcript_region:SL2.40ch04:60660616..60662496+ go_terms:GO:0005634 functional_description:"Cyclin A-like protein (AHRD V1 ***- Q40492_TOBAC); contains Interpro domain(s) IPR015453 G2/mitotic-specific cyclin A " 3 7 1 20 opLeV0100000101 sgn|U214293 AAGAAGTTCAGTTCGTCCACTCCTCCTCCAGATCCGACAATTCACTTGATCGCTGCAATGAGGCAGCTTC Experimental SGN-U568070 Tomato 200607#2 [56 ESTs aligned] (*GB) gi|147797488|emb|CAN73516.1| (e_value=9e-49) hypothetical; (*ATH) AT1G72510.2 (e_value=1e-44) | Symbol: None | expressed protein | chr1:27307075-27308512 FORWARD | Aliases: None; Solyc03g122300.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:64225365-64225850 transcript_region:SL2.40ch03:64225365..64225850+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012876 Protein of unknown function DUF1677, plant " 3 5 1 20 opLeV0100000102 sgn|U216147 TTATTGTACACCTTTTTCCCTTCACCACACTCAATCTGGTAATCTTTCCCTGGAACTAAGCGGTTAAGAT Experimental SGN-U573865 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|157342035|emb|CAO63491.1| (e_value=5e-164) unnamed; (*SWP) sp|P21128|PP11_HUMAN (e_value=1e-42) Placental protein 11 OS=Homo sapiens; Solyc08g077510.2.1 genomic_reference:SL2.40ch08 gene_region:58665382-58670129 transcript_region:SL2.40ch08:58665382..58670129+ go_terms:GO:0004521,GO:0003723 functional_description:"Poly(U)-specific endoribonuclease-A (AHRD V1 **** ENDUA_XENLA); contains Interpro domain(s) IPR018998 Endoribonuclease XendoU " 3 3 1 20 opLeV0100000103 sgn|U220084 ATGAATCTTCTTAAACGACTAGCAGAGGAAGGACAAGGTGTGGCAAATGGTCAACCTCAGGCTAACCCCG Experimental SGN-U583680 Tomato 200607#2 [31 ESTs aligned] (*GB) gi|15231390|ref|NP_188003.1| (e_value=0) root hair defective 3 (RHD3) [Arabidopsis thaliana]; (*ATH) AT3G13870.1 (e_value=0) | Symbol: None | root hair defective 3 (RHD3), identical to root hair defective 3 (RHD3) GI:1839188 from (Arabidopsis thaliana) (Genes Dev (1997) 11(6), 799-811) | chr3:4565419-4571267 REVERSE | Aliases: MCP4.11; (*SWP) sp|Q9P5X6|SEY1_NEUCR (e_value=7e-80) Protein sey-1 OS=Neurospora crassa GN=sey-1; Solyc03g121590.2.1 genomic_reference:SL2.40ch03 gene_region:63727316-63737352 transcript_region:SL2.40ch03:63727316..63737352+ go_terms:GO:0031177 functional_description:"Protein SEY1 (AHRD V1 ***- B6U4D9_MAIZE); contains Interpro domain(s) IPR008803 Root hair defective 3 GTP-binding " 3 1 1 20 opLeV0100000104 sgn|U213447 CCAACCCTAACCTTCGGATCAGGTCTGAGCATCCAAGTTTCGAGATCTGT Experimental SGN-U581108 Tomato 200607#2 [129 ESTs aligned] (*GB) gi|3023752|sp|Q43517|FER1_SOLLC (e_value=2e-64) RecName:; (*ATH) AT1G54290.1 (e_value=5e-54) Symbol: None | eukaryotic translation initiation factor SUI1, putative, similar to P:P32911 Protein translation factor SUI1 {Saccharomyces cerevisiae}; contains Pfam profile PF01253: Translation initiation factor SUI1 | chr1:20272152-20273774 REVERS... ; (*SWP) sp|Q43517|FER1_SOLLC (e_value=1e-65) Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33; \N \N 3 7 5 20 opLeV0100000105 sgn|U214627 ACCCTTTTGCGAATACTGGTATTGTTGGCTTCATTGGTTCAGGAGACCCC Experimental SGN-U588693 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147782365|emb|CAN70580.1| (e_value=3e-35) hypothetical; (*ATH) AT1G51760.1 (e_value=9e-33) | Symbol: None | IAA-amino acid hydrolase 3 / IAA-Ala hydrolase 3 (IAR3), identical to IAA-Ala hydrolase (IAR3) (Arabidopsis thaliana) GI:3421384 | chr1:19203137-19205311 FORWARD | Aliases: F19C24.4, F19C24_4; (*SWP) sp|O04373|ILL4_ARATH (e_value=8e-32) IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsis thaliana GN=ILL4; Solyc03g121270.2.1 genomic_reference:SL2.40ch03 gene_region:63482883-63487287 transcript_region:SL2.40ch03:63482883..63487287+ go_terms:GO:0010179 functional_description:"IAA-amino acid hydrolase (AHRD V1 **** D5FTH2_POPTO); contains Interpro domain(s) IPR017439 Peptidase M20D, mername-AA028/carboxypeptidase Ss1 " 3 5 5 20 opLeV0100000106 sgn|U234781 TGATCATGTCCATCGAGAATGTTCACTATCTGCCTCATGCTCGGTCTTGATTCAGGATCGTATCTAGTGC Experimental SGN-U566389 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|147767429|emb|CAN66719.1| (e_value=1e-137) hypothetical; (*ATH) AT2G32800.1 (e_value=2e-103) | Symbol: None | protein kinase family protein, contains dual protein kinase domains, Pfam:PF00069 | chr2:13923529-13926629 FORWARD | Aliases: F24L7.6, F24L7_6; (*SWP) sp|Q9M0X5|CRK25_ARATH (e_value=6e-39) Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25; Solyc09g092010.1.1 evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:66535360-66535545 transcript_region:SL2.40ch09:66535360..66535545+ functional_description:"Unknown Protein (AHRD V1)" 3 3 5 20 opLeV0100000107 sgn|U215083 CTCTAGTCTTTCCTCCAGAAAGAGTGCATATGTACGTACCCAAGCTGAGCAATCCCAACCAAGATGACTT Experimental SGN-U568053 Tomato 200607#2 [30 ESTs aligned] (*GB) gi|124360187|gb|ABN08200.1| (e_value=3e-89) AAA; (*ATH) AT1G54350.1 (e_value=3e-88) | Symbol: None | ABC transporter family protein, similar to hypothetical ABC transporter ATP-binding protein GI:9955395 from (Microcystis aeruginosa) | chr1:20290549-20294068 FORWARD | Aliases: F20D21.17, F20D21_17; (*SWP) sp|Q8VYT2|CAP6_ARATH (e_value=1e-67) Putative clathrin assembly protein At4g25940 OS=Arabidopsis thaliana GN=At4g25940; Solyc12g017440.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:6690841-6693282 transcript_region:SL2.40ch12:6690841..6693282- go_terms:GO:0030118,GO:0005543 functional_description:"Clathrin assembly protein (AHRD V1 ***- B6TW95_MAIZE); contains Interpro domain(s) IPR011417 ANTH " 3 1 5 20 opLeV0100000108 sgn|U219185 AGGAGCTTCTGGCTCTGGGAGAAAGAATTGGCCATGTCAATACTGGCTTGTCGGAGGAACTGATTTCAAA Experimental SGN-U589144 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147858806|emb|CAN80846.1| (e_value=7e-77) hypothetical; (*ATH) AT2G37150.2 (e_value=2e-50) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr2:15610663-15615497 REVERSE | Aliases: None; Solyc09g007530.2.1 genomic_reference:SL2.40ch09 gene_region:1106574-1110425 transcript_region:SL2.40ch09:1106574..1110425- go_terms:GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 *-*- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type " 3 7 9 20 opLeV0100000109 sgn|U218913 TGGCAAAGGCCCAGGCATTGTTATTAACTGGATCCGCAAGGTGGTCAGCG Experimental SGN-U593292 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157344623|emb|CAO70006.1| (e_value=2e-55) unnamed; (*ATH) AT2G34430.1 (e_value=4e-49) | Symbol: None | chlorophyll A-B binding protein / LHCII type I (LHB1B1), identical to photosystem II type I chlorophyll a/b binding protein (Arabidopsis thaliana) GI:16366 | chr2:14531835-14532842 FORWARD | Aliases: F13P17.29, T31E10.23, T31E10_23; (*SWP) sp|P07370|CB2B_SOLLC (e_value=1e-50) Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B; Solyc02g070990.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:35095230-35096027 transcript_region:SL2.40ch02:35095230..35096027+ go_terms:GO:0005515,GO:0016168 functional_description:"Chlorophyll a/b binding protein (AHRD V1 **** Q41422_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein " 3 5 9 20 opLeV0100000110 sgn|U213826 TTCGGATACTGTGTGCCCCTGGTGCTTTGTGGGGAAAAAGAACCTTCATAAAGCTATAGCGTTAACCAGT Experimental SGN-U564793 Tomato 200607#2 [30 ESTs aligned] (*GB) gi|157341306|emb|CAO49213.1| (e_value=3e-87) unnamed; (*ATH) AT5G38900.1 (e_value=3e-76) | Symbol: None | DSBA oxidoreductase family protein, contains Pfam profile: PF01323 DSBA-like thioredoxin domain | chr5:15590735-15592848 REVERSE | Aliases: K15E6.80, K15E6_80; Solyc02g089230.2.1 genomic_reference:SL2.40ch02 gene_region:45678308-45681002 transcript_region:SL2.40ch02:45678308..45681002+ go_terms:GO:0003824 functional_description:"DSBA oxidoreductase family protein (AHRD V1 ***- D7MJT4_ARALY); contains Interpro domain(s) IPR001853 DSBA oxidoreductase " 3 3 9 20 opLeV0100000111 sgn|U220314 ACCCTCCTCCCCTAAACTAAATGTCCTTCATGAGAGAGGGCAACTTGGTACTTTGGTTCTTTATAAACAC Experimental SGN-U563190 Tomato 200607#2 [12 ESTs aligned] Solyc10g009380.2.1 genomic_reference:SL2.40ch10 gene_region:3447460-3449474 transcript_region:SL2.40ch10:3447460..3449474- functional_description:"Unknown Protein (AHRD V1)" 3 1 9 20 opLeV0100000112 sgn|U222510 CTTCATGTTTATCCCCAACTGTTGCAAAGATCTGATTCAGCCTAGGGTGCCAGGCACACTGCACAACACT Experimental SGN-U586310 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|157350493|emb|CAO40542.1| (e_value=0) unnamed; (*ATH) AT2G20330.1 (e_value=0) Symbol: None | transducin family protein / WD-40 repeat family protein, similar to Transcriptional repressor rco-1 (SP:P78706) (Neurospora crassa); similar to TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400) | chr2:8779856-8782695 REVERSE | Ali... ; (*SWP) sp|Q0VA16|WDR70_XENTR (e_value=1e-115) WD repeat-containing protein 70 OS=Xenopus tropicalis GN=wdr70; Solyc06g008110.2.1 genomic_reference:SL2.40ch06 gene_region:1993664-1998920 transcript_region:SL2.40ch06:1993664..1998920- go_terms:GO:0005515,GO:0000166 functional_description:"WD repeat-containing protein (AHRD V1 **-- C9SVG1_VERA1); contains Interpro domain(s) IPR017986 WD40 repeat, region " 1 7 2 20 opLeV0100000113 sgn|U225561 GCTACCTTGCTCCGTCGACGACTTCCTCCATATAAGGTGGAGGATTGAGAAGGAACCTAATGGAAGCCAC Experimental SGN-U572005 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|147774056|emb|CAN76261.1| (e_value=1e-35) hypothetical; (*ATH) AT5G53590.1 (e_value=5e-15) | Symbol: None | auxin-responsive family protein, similar to indole-3-acetic acid induced protein ARG7 (SP:P32295) (Vigna radiata) | chr5:21789047-21790020 FORWARD | Aliases: MNC6.13, MNC6_13; Solyc05g056440.1.1 evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:64880146-64880463 transcript_region:SL2.40ch05:64880146..64880463- go_terms:GO:0005516 functional_description:"Auxin responsive SAUR protein (AHRD V1 *-*- Q1SN26_MEDTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein " 1 5 2 20 opLeV0100000114 sgn|U231218 GAAGAACCGGAACTTGTGGTTGAGAAGGAAGGTGGGGCAGCTTTTTTCCCTGATGATTACCAACTAGACG Experimental SGN-U564824 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|79531915|ref|NP_199655.3| (e_value=9e-138) oxidoreductase; (*ATH) AT5G48440.1 (e_value=7e-140) Symbol: None | expressed protein, similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD34424.1); contains InterPro domain FAD dependent oxidoreductase (InterPro:IPR006076); contains InterPro domain NAD-binding site (InterPro:IP... ; Solyc09g055910.2.1 genomic_reference:SL2.40ch09 gene_region:41669033-41676342 transcript_region:SL2.40ch09:41669033..41676342- go_terms:GO:0016491 functional_description:"D-amino acid dehydrogenase small subunit (AHRD V1 ***- DADA_NEIMF); contains Interpro domain(s) IPR006076 FAD dependent oxidoreductase " 1 3 2 20 opLeV0100000115 sgn|U224872 GCGAGTTCATGGACCCACTTCTGGATTCGTCTACACCAGAAACTCTACAAGGCTCTTCACAACTCAATAC Experimental SGN-U567062 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157348135|emb|CAO22845.1| (e_value=5e-87) unnamed; (*ATH) AT5G49555.1 (e_value=6e-85) | Symbol: None | amine oxidase-related, contains Pfam profile PF01593: amine oxidase, flavin-containing | chr5:20124455-20127862 REVERSE | Aliases: None; (*SWP) sp|Q3MHH6|CJ033_BOVIN (e_value=3e-42) Probable oxidoreductase C10orf33 homolog OS=Bos taurus; Solyc02g085250.2.1 genomic_reference:SL2.40ch02 gene_region:42789344-42799166 transcript_region:SL2.40ch02:42789344..42799166- go_terms:GO:0016491 functional_description:"FAD dependent oxidoreductase (AHRD V1 **-- A6CBH0_9PLAN); contains Interpro domain(s) IPR006076 FAD dependent oxidoreductase " 1 1 2 20 opLeV0100000116 sgn|U227315 GAACCCCACACCCCCATTAACCCCAAATGGAGAAATTCTCACAATTGCAGCTTTGGGTAATGATGCTGAG Experimental SGN-U579169 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157348752|emb|CAO23644.1| (e_value=4e-99) unnamed; Solyc02g068350.1.1 evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:32896287-32897225 transcript_region:SL2.40ch02:32896287..32897225- go_terms:GO:0033014 functional_description:"Uroporphyrinogen-III synthase (AHRD V1 ***- Q3M8K2_ANAVT); contains Interpro domain(s) IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase " 1 7 6 20 opLeV0100000117 sgn|U216939 CTCAGACGTCAACCTCGTCAGACGTCTATGGTATAAAAATGCCCAGAGGCTGCTCGTGATCATCAATTAG Experimental SGN-U588164 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|22328793|ref|NP_193656.2| (e_value=1e-59) RNase L inhibitor protein, putative [Arabidopsis thaliana]; (*ATH) AT4G19210.1 (e_value=9e-62) | Symbol: None | RNase L inhibitor protein, putative, similar to 68 kDa protein HP68 GI:16755057 from (Triticum aestivum) | chr4:10501214-10505228 FORWARD | Aliases: T18B16.180, T18B16_180; (*SWP) sp|P61222|ABCE1_MOUSE (e_value=2e-49) ATP-binding cassette sub-family E member 1 OS=Mus musculus GN=Abce1; Solyc07g008340.2.1 genomic_reference:SL2.40ch07 gene_region:3121463-3128185 transcript_region:SL2.40ch07:3121463..3128185+ go_terms:GO:0008428 functional_description:"Zinc import ATP-binding protein ZnuC (AHRD V1 *-*- ZNUC_RICCN); contains Interpro domain(s) IPR013283 ABC transporter, ABCE " 1 5 6 20 opLeV0100000118 sgn|U229296 GTGTAGAGATTTCAGTAGCTACAGCTTCAACTATGTTTCCTGGGTTTAGATTTTGTCCAACTGATGAAGA Experimental SGN-U576818 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147832851|emb|CAN63961.1| (e_value=2e-40) hypothetical; (*ATH) AT3G44290.1 (e_value=4e-35) | Symbol: ANAC060 | no apical meristem (NAM) family protein, contains Pfam PF02365: No apical meristem (NAM) domain; NAC2 - Arabidopsis thaliana, EMBL:AF201456 | chr3:15983896-15986170 REVERSE | Aliases: T10D17.80, ANAC060; (*SWP) sp|Q7GCL7|NAC74_ORYSJ (e_value=4e-25) NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74; Solyc11g068750.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50465592-50470925 transcript_region:SL2.40ch11:50465592..50470925+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9HQ28_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein " 1 1 6 20 opLeV0100000119 sgn|U218548 TCTCATCGTGCTAACCACCGAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACC Experimental SGN-U565373 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|157350832|emb|CAO40947.1| (e_value=1e-85) unnamed; (*ATH) AT1G24090.1 (e_value=3e-69) Symbol: None | RNase H domain-containing protein, very low similarity to GAG-POL precursor (Oryza sativa (japonica cultivar-group)) GI:5902445; contains Pfam profiles PF00075: RNase H, PF04134: Protein of unknown function, DUF393 | chr1:8520823-8524... ; (*SWP) sp|P64955|Y2228_MYCTU (e_value=7e-12) Uncharacterized protein Rv2228c/MT2287 OS=Mycobacterium tuberculosis GN=Rv2228c; Solyc01g008060.2.1 genomic_reference:SL2.40ch01 gene_region:2202763-2211056 transcript_region:SL2.40ch01:2202763..2211056+ go_terms:GO:0003676,GO:0004523 functional_description:"Phosphoglycerate mutase (AHRD V1 *--- A4TBN9_MYCGI); contains Interpro domain(s) IPR002156 Ribonuclease H " 1 7 10 20 opLeV0100000120 sgn|U235033 ATTGCCATTGCTGGAATCAGTGTCCCCTTTGTATTAAGAATAGGAACATCCTTTGCTCTGAGAGCAACTA Experimental SGN-U587364 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|186701211|gb|ACC91238.1| (e_value=1e-52) putative; (*ATH) AT4G23700.1 (e_value=1e-53) Symbol: None | cation/hydrogen exchanger, putative (CHX17), similar to Na+/H+-exchanging protein slr1595 - Synechocystis sp., EMBL:D90902; monovalent cation:proton antiporter family 2 (CPA2) member, PMID:11500563 | chr4:12342438-12346052 REVERSE | A... ; (*SWP) sp|P40309|KHA1_YEAST (e_value=3e-13) K(+)/H(+) antiporter 1 OS=Saccharomyces cerevisiae GN=KHA1; Solyc08g081820.2.1 genomic_reference:SL2.40ch08 gene_region:61928548-61931640 transcript_region:SL2.40ch08:61928548..61931640- go_terms:GO:0015385 functional_description:"Cation/H+ antiporter (AHRD V1 **** Q8A6U3_BACTN); contains Interpro domain(s) IPR006153 Cation/H+ exchanger " 1 5 10 20 opLeV0100000121 sgn|U240588 CCACCTTTTGCCAAAATTTACTAATTATAAGGGTTGGGGAAACCCTCAGGGAAAAAAAATGGGCTTCCCC Experimental SGN-U598366 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|1730557|sp|P53535|PHSL2_SOLTU (e_value=2e-12) Alpha-1,4; (*ATH) AT3G29320.1 (e_value=3e-13) | Symbol: None | glucan phosphorylase, putative, similar to alpha-glucan phosphorylase, L isozyme 1 precursor GB:P04045 from (Solanum tuberosum) (J. Biochem. 106 (4), 691-695 (1989)) | chr3:11254059-11259051 FORWARD | Aliases: MUO10.17; (*SWP) sp|P53535|PHSL2_SOLTU (e_value=2e-13) Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum GN=STP-1; \N \N 1 3 10 20 opLeV0100000122 sgn|U243120 CAGTATCAAGCACACCGATAACGGAAGATAGGGCTGAATTCCACTCTTGCACGCCACTCTGAGGATCCTT Experimental SGN-U603765 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157336593|emb|CAO71278.1| (e_value=3e-27) unnamed; (*ATH) AT3G23020.1 (e_value=4e-22) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, low similarity to leaf protein (Ipomoea nil) GI:3107905; contains Pfam profile PF01535: PPR repeat | chr3:8177222-8179750 REVERSE | Aliases: MXC7.5; Solyc09g083110.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64190886-64193786 transcript_region:SL2.40ch09:64190886..64193786- go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L2I5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat " 1 1 10 20 opLeV0100000123 sgn|U215126 AAGCTTGTCCTCGTAATTGTAATCCAAGAATAGCGTACTCGATATGTCCAGGCAATAAAAGGAGTGAAGG Experimental SGN-U564978 Tomato 200607#2 [35 ESTs aligned] (*GB) gi|76446066|gb|ABA42904.1| (e_value=8e-41) trypsin; (*SWP) sp|O49146|IP22_CAPAN (e_value=5e-35) Wound-induced proteinase inhibitor 2 OS=Capsicum annuum GN=PIN2; Solyc11g020960.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:12996643-12997161 transcript_region:SL2.40ch11:12996643..12997161+ go_terms:GO:0004867 functional_description:"Proteinase inhibitor II (AHRD V1 ***- B3F0C1_TOBAC); contains Interpro domain(s) IPR003465 Proteinase inhibitor I20, Pin2 " 3 7 2 20 opLeV0100000124 sgn|U215443 GCTCATGGGAAAGGGCAGGCATTGCAGTTCAATTATCTGTTCGAGAAAGGCGCATTTATTTTGCATCCCG Experimental SGN-U579067 Tomato 200607#2 [52 ESTs aligned] (*GB) gi|157348375|emb|CAO23162.1| (e_value=0) unnamed; (*ATH) AT1G79690.1 (e_value=0) Symbol: ATNUDT3 | MutT/nudix family protein, contains Pfam NUDIX domain (PF00293); very low similarity to Chain A and Chain B of Escherichia coli isopentenyl diphosphate:dimethylallyl diphosphate isomerase (gi:15826361) (gi:15826360) | chr1:29990223... ; (*SWP) sp|Q8L831|NUDT3_ARATH (e_value=0) Nudix hydrolase 3 OS=Arabidopsis thaliana GN=NUDT3; Solyc08g075390.2.1 genomic_reference:SL2.40ch08 gene_region:56687214-56708030 transcript_region:SL2.40ch08:56687214..56708030- go_terms:GO:0005515 functional_description:"Isopentenyl-diphosphate delta-isomerase family protein (AHRD V1 *--- B1KWZ7_CLOBM); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain " 3 5 2 20 opLeV0100000125 sgn|U223335 TTCAAATGATGATGGAAGTGAGCTTGTTCGGCTAGCCACTCGTTGTTTACAATATGAGGCACGTGAGAGG Experimental SGN-U568703 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157346050|emb|CAO15747.1| (e_value=5e-115) unnamed; (*ATH) AT5G59010.2 (e_value=3e-111) |; (*SWP) sp|Q9FHD7|Y5126_ARATH (e_value=6e-94) Putative serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260; Solyc09g011750.2.1 genomic_reference:SL2.40ch09 gene_region:5045721-5050019 transcript_region:SL2.40ch09:5045721..5050019+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 3 3 2 20 opLeV0100000126 sgn|U215038 CTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGC Experimental SGN-U577574 Tomato 200607#2 [39 ESTs aligned] (*GB) gi|14275859|emb|CAC39620.1| (e_value=5e-81) ferredoxin-thioredoxin-reductase catalytic subunit B [Solanum tuberosum]; (*ATH) AT2G04700.1 (e_value=7e-61) | Symbol: None | ferredoxin thioredoxin reductase catalytic beta chain family protein, contains Pfam profile: PF02943 ferredoxin thioredoxin reductase catalytic beta | chr2:1646805-1648554 FORWARD | Aliases: F28I8.26, F28I8_26; (*SWP) sp|P41349|FTRC2_SPIOL (e_value=2e-62) Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea; Solyc02g087230.2.1 genomic_reference:SL2.40ch02 gene_region:44259650-44265112 transcript_region:SL2.40ch02:44259650..44265112- go_terms:GO:0055114 functional_description:"Ferredoxin-thioredoxin reductase catalytic chain (AHRD V1 ***- B6TNR7_MAIZE); contains Interpro domain(s) IPR004209 Ferredoxin thioredoxin reductase, beta subunit " 3 1 2 20 opLeV0100000127 sgn|U218239 TAAAAAACGCGTTTATATTTGCCCAGAAAGTTCGTGCATTCATCATAATCCTTCTCGTGCTCTTGGAGAT Experimental SGN-U570119 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|157347170|emb|CAO17552.1| (e_value=5e-83) unnamed; (*ATH) AT1G03840.1 (e_value=1e-80) | Symbol: None | zinc finger (C2H2 type) family protein, contains Zinc finger,C2H2 type,domain contains Pfam domain, PF00096: Zinc finger, C2H2 type | chr1:967505-970129 REVERSE | Aliases: F21M11.25, F21M11_25; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=1e-79) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP; Solyc01g099340.2.1 genomic_reference:SL2.40ch01 gene_region:81384148-81388335 transcript_region:SL2.40ch01:81384148..81388335+ go_terms:GO:0005622 functional_description:"Zinc finger protein (AHRD V1 *--- Q764N7_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type " 3 7 6 20 opLeV0100000128 sgn|U223028 TCAATCAAAGGTTCTAAATGCTGATGATGAGAAGGGAGTTGGCGGGAACGATAAGAAGGAGCACTCGAAG Experimental SGN-U579354 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157336794|emb|CAO71479.1| (e_value=1e-77) unnamed; (*ATH) AT2G33310.1 (e_value=2e-62) Symbol: None | auxin-responsive protein / indoleacetic acid-induced protein 13 (IAA13), identical to SP:Q38831 Auxin-responsive protein IAA13 (Indoleacetic acid-induced protein 13) {Arabidopsis thaliana} | chr2:14121358-14123164 REVERSE | Aliases: F... ; (*SWP) sp|Q38831|IAA13_ARATH (e_value=2e-61) Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13; Solyc09g090910.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65662705-65665621 transcript_region:SL2.40ch09:65662705..65665621- go_terms:GO:0005515,GO:0016564 functional_description:"Auxin responsive protein (AHRD V1 ***- B3U2A2_CUCSA); contains Interpro domain(s) IPR003311 AUX/IAA protein " 3 5 6 20 opLeV0100000129 sgn|U212622 TTGTTTTGTGGTTTGGAACTTTGTGCTGTTTGGCCACCTTGGTGGCACAATTATTGATATCTTTGCATTT Experimental SGN-U564023 Tomato 200607#2 [101 ESTs aligned] (*GB) gi|76573295|gb|ABA46752.1| (e_value=0) unknown [Solanum tuberosum]; (*ATH) AT5G23860.1 (e_value=0) | Symbol: None | tubulin beta-8 chain (TUB8) (TUBB8), identical to SP:P29516 Tubulin beta-8 chain {Arabidopsis thaliana}; supporting cDNA gi:15451225:gb:AY054693.1: | chr5:8042886-8044822 FORWARD | Aliases: None; (*SWP) sp|P29516|TBB8_ARATH (e_value=0) Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TUBB8; Solyc06g035970.2.1 genomic_reference:SL2.40ch06 gene_region:22016405-22019376 transcript_region:SL2.40ch06:22016405..22019376- go_terms:GO:0005200 functional_description:"Tubulin beta chain (AHRD V1 ***- B9GKJ5_POPTR); contains Interpro domain(s) IPR002453 Beta tubulin " 3 3 6 20 opLeV0100000130 sgn|U241720 ATGCTCCCTCTAAGAAGGTGCTGACCGGAGTGGAATCTGCATTGGAACATCACTCCGATATCAAGAAATC Experimental SGN-U586454 Tomato 200607#2 [37 ESTs aligned] (*GB) gi|147815573|emb|CAN68287.1| (e_value=9e-173) hypothetical; (*ATH) AT2G43820.1 (e_value=2e-149) | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr2:18159304-18160985 FORWARD | Aliases: F18O19.7; (*SWP) sp|P0C7P7|Y1567_ARATH (e_value=1e-114) Probable UDP-glucosyl transferase At1g05670 OS=Arabidopsis thaliana GN=At1g05670; Solyc08g062210.2.1 genomic_reference:SL2.40ch08 gene_region:47964141-47973284 transcript_region:SL2.40ch08:47964141..47973284+ go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit A-3 (AHRD V1 **** B6TQI5_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B " 3 1 6 20 opLeV0100000131 sgn|U219975 CCTTTATTTGCTTTACAAGCTCCTACTGCAGTTGTCTCGTGGATCCAGGGTGAATATGGCATTTGGTCAG Experimental SGN-U572045 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157358997|emb|CAO66899.1| (e_value=3e-56) unnamed; (*ATH) AT1G29390.1 (e_value=8e-55) Symbol: None | stress-responsive protein, putative, similar to cold acclimation WCOR413-like protein gamma form (Hordeum vulgare) gi:18449100:gb:AAL69988; similar to stress-regulated protein SAP1 (Xerophyta viscosa) gi:21360378:gb:AAM47505 | chr1:10... ; Solyc02g071210.2.1 genomic_reference:SL2.40ch02 gene_region:35264074-35268444 transcript_region:SL2.40ch02:35264074..35268444- functional_description:"Cold acclimation protein COR413-like (AHRD V1 *-*- A6YDU6_LOLTE); contains Interpro domain(s) IPR008892 Cold acclimation WCOR413 " 3 7 10 20 opLeV0100000132 sgn|U222621 GCTTTTGGCATTCTTGGAAATGGGGTGTCGTTCTTGGTGTACTTGTCCCCACTGCCGACTTTCTATAGGA Experimental SGN-U581162 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157347825|emb|CAO22412.1| (e_value=1e-78) unnamed; (*ATH) AT5G50790.1 (e_value=2e-66) | Symbol: None | nodulin MtN3 family protein, similar to MtN3 GI:1619602 (root nodule development) from (Medicago truncatula) | chr5:20673479-20675225 REVERSE | Aliases: MFB16.26, MFB16_26; (*SWP) sp|Q8LFH5|RPG1_ARATH (e_value=1e-26) Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1; Solyc09g074530.2.1 genomic_reference:SL2.40ch09 gene_region:61857563-61859113 transcript_region:SL2.40ch09:61857563..61859113+ go_terms:GO:0016021 functional_description:"MTN3 (AHRD V1 **-- B6T9U6_MAIZE); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue " 3 5 10 20 opLeV0100000133 sgn|U229836 AAATTTAAGGCCAGTTGTCCAAGCTGTTTCGTCAGTGCTGGTGCCCCACAGTAAAAAACTCCAACTTTTG Experimental SGN-U577640 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|166199744|sp|Q2HXK9|RBOHD_SOLTU (e_value=0) Respiratory; (*ATH) AT5G47910.1 (e_value=1e-138) | Symbol: None | respiratory burst oxidase protein D (RbohD) / NADPH oxidase, identical to respiratory burst oxidase protein D from Arabidopsis thaliana (gi:3242789) | chr5:19414669-19419287 FORWARD | Aliases: MCA23.25, MCA23_25; (*SWP) sp|Q2HXK9|RBOHD_SOLTU (e_value=0) Respiratory burst oxidase homolog protein D OS=Solanum tuberosum GN=RBOHD; Solyc06g068680.2.1 genomic_reference:SL2.40ch06 gene_region:38967784-38973268 transcript_region:SL2.40ch06:38967784..38973268+ go_terms:GO:0016174 functional_description:"Respiratory burst oxidase-like protein (AHRD V1 **** C1IHQ9_9ROSI); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding " 3 3 10 20 opLeV0100000134 sgn|U220031 AGCACTCCTAGATGCTGACTTTGCAATGCGGGATGGAGAAAACAATGCAAAAGCTCTATTTCGTCAGGGT Experimental SGN-U571739 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157340954|emb|CAO47759.1| (e_value=2e-154) unnamed; (*ATH) AT2G15790.1 (e_value=4e-141) Symbol: None | peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase, identical to cyclophilin-40 (Arabidopsis thaliana) GI:13442983; supporting cDNA gi:13442982:gb:AY026065.1: | chr2:6884857-6887980 REVERSE | Aliases: F19G14.21, F... ; (*SWP) sp|Q9C566|CYP40_ARATH (e_value=4e-140) Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40; Solyc01g108340.2.1 genomic_reference:SL2.40ch01 gene_region:87448017-87452641 transcript_region:SL2.40ch01:87448017..87452641+ go_terms:GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase D (AHRD V1 **** PPID_RAT); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type " 3 1 10 20 opLeV0100000135 sgn|U225338 TCAGGTTGAGAACGTCCCCTCAAGATCGACAAGATGCAGCGTACAGGTACAACTGGGAATCGCTTGGTTA Experimental SGN-U576579 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157330290|emb|CAO45075.1| (e_value=3e-18) unnamed; (*ATH) AT1G03370.1 (e_value=9e-18) Symbol: None | C2 domain-containing protein / GRAM domain-containing protein, contains Pfam profiles PF00168: C2 domain; contains PF02893: GRAM domain; similar to Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length(GI:6980525); similar to ... ; Solyc04g015160.2.1 genomic_reference:SL2.40ch04 gene_region:5339830-5347460 transcript_region:SL2.40ch04:5339830..5347460+ functional_description:"C2 domain-containing protein (AHRD V1 **-- D7KCE5_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein " 1 7 3 20 opLeV0100000136 sgn|U213592 AGCTTGTAGCCAAACAGGAAGGTCTTCTAGAGAATGGATTCAGACTCGTGATCAACGATGGGCCTGATGG Experimental SGN-U590454 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|120559|sp|P14903|FSPM_LYCES (e_value=7e-49) Fruit-specific protein; (*ATH) AT3G56490.1 (e_value=6e-24) | Symbol: None | zinc-binding protein, putative / protein kinase C inhibitor, putative, similar to 14 kDa zinc-binding protein (Protein kinase C inhibitor, PKCI) (Zea mays) Swiss-Prot:P42856 | chr3:20952481-20954381 FORWARD | Aliases: T5P19.140; (*SWP) sp|P14903|FSPM_SOLLC (e_value=5e-50) Fruit-specific protein OS=Solanum lycopersicum GN=2A11; Solyc10g081310.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61732156-61735368 transcript_region:SL2.40ch10:61732156..61735368- go_terms:GO:0003824 functional_description:"Histidine triad (HIT) protein (AHRD V1 ***- Q2MGQ9_MEDTR); contains Interpro domain(s) IPR001310 Histidine triad (HIT) protein " 1 5 3 20 opLeV0100000137 sgn|U239280 AGAAACTTCTCCACTAGCTTGATTAGCTTTCAAGCCTCGCAGGCAAAATTCGCCAACGAAGTACCCCTGT Experimental SGN-U582205 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157360161|emb|CAO69350.1| (e_value=7e-21) unnamed; (*ATH) AT4G27940.1 (e_value=5e-22) | Symbol: None | mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein | chr4:13904480-13907249 FORWARD | Aliases: T13J8.50, T13J8_50; Solyc01g095510.2.1 genomic_reference:SL2.40ch01 gene_region:78512086-78519591 transcript_region:SL2.40ch01:78512086..78519591+ go_terms:GO:0005384,GO:0016530 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1E2Y0_9CHLO); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 " 1 3 3 20 opLeV0100000138 sgn|U219340 AGGTTCTTACGCTAGCTCTTGGATCACTTGCTGTCTAGGATCCTTGACTT Experimental SGN-U576682 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|15290521|gb|AAK92218.1| (e_value=1e-24) SET domain protein SUVR2 [Arabidopsis thaliana]; (*ATH) AT5G43990.2 (e_value=7e-27) Symbol: None | SET domain-containing protein, identical to SET domain protein SUVR2 (Arabidopsis thaliana) GI:15290521; contains Pfam profiles PF00856: SET domain, PF05033: Pre-SET motif; identical to cDNA SET domain protein SUVR2 GI:15290520 | chr5... ; (*SWP) sp|Q9FNC7|SUVR2_ARATH (e_value=7e-26) Histone-lysine N-methyltransferase SUVR2 OS=Arabidopsis thaliana GN=SUVR2; \N \N 1 1 3 20 opLeV0100000139 sgn|U225353 GCTGAACAAGACGTGTGTGATGATTATATTACTGAAGATTCATATAGTTGAACTGGACGTGCAAGGGATT Experimental SGN-U575535 Tomato 200607#2 [3 ESTs aligned] \N \N 1 7 7 20 opLeV0100000140 sgn|U234606 GATTCAATCGGTACCTTAAGTTCCTTGACTCGCTTGTACCTCTTTGGATGCCAATTCTCTGGTCGCATTC Experimental SGN-U574718 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147773180|emb|CAN78183.1| (e_value=9e-39) hypothetical; (*ATH) AT5G27060.1 (e_value=9e-38) Symbol: None | disease resistance family protein, contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-0B (Lycopersicon esculentum) gi:3894387:gb:AAC78593 | chr5:9522537-9525410 REVERSE | Aliases: F15P11.4, F1... ; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=1e-31) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2; Solyc12g009520.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2776577-2779468 transcript_region:SL2.40ch12:2776577..2779468- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP" 1 5 7 20 opLeV0100000141 sgn|U227415 GGAGGGGCCGTGGCTCTTTTAACACACAAGAAGGATCCTTCCTTTTGGCATGGTGCTCTTCTGGTTGCAC Experimental SGN-U582633 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|30695682|ref|NP_191845.2| (e_value=4e-68) esterase/lipase/thioesterase family [Arabidopsis thaliana]; (*ATH) AT3G62860.1 (e_value=3e-70) | Symbol: None | esterase/lipase/thioesterase family protein, similar to monoglyceride lipase from (Homo sapiens) GI:14594904, (Mus musculus) GI:2632162; contains Interpro entry IPR000379 | chr3:23250421-23253226 REVERSE | Aliases: F26K9.290; (*SWP) sp|Q8R431|MGLL_RAT (e_value=1e-15) Monoglyceride lipase OS=Rattus norvegicus GN=Mgll; Solyc09g075140.2.1 genomic_reference:SL2.40ch09 gene_region:62435204-62439921 transcript_region:SL2.40ch09:62435204..62439921- go_terms:GO:0008289,GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9M3D1_ARATH)" 1 3 7 20 opLeV0100000142 sgn|U214475 TACTAGCAATTCCAGAAGCTGCACCTTCTCCACCACAATCTTCTGCTTCCACTCGTAAGAGCGGAGGAGG Experimental SGN-U593397 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|82621168|gb|ABB86272.1| (e_value=2e-50) unknown; (*ATH) AT3G02555.1 (e_value=1e-12) | Symbol: None | expressed protein | chr3:539712-541510 REVERSE | Aliases: None; Solyc03g119520.2.1 genomic_reference:SL2.40ch03 gene_region:62154691-62156156 transcript_region:SL2.40ch03:62154691..62156156+ functional_description:"Unknown Protein (AHRD V1)" 1 1 7 20 opLeV0100000143 sgn|U237336 GGATAATGCTGTGAAGAATCGGTTCACTACACTGTGCAAAAAGAGAGCAAAGCATGAAGCTTTGGCTAAA Experimental SGN-U571677 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|48209878|gb|AAT40484.1| (e_value=2e-88) putative Myb-like DNA-binding protein [Solanum demissum]; (*ATH) AT1G14350.1 (e_value=1e-59) | Symbol: None | myb family transcription factor (MYB124), contains PFAM profile: PF00249 myb-like DNA binding domain | chr1:4908250-4911163 FORWARD | Aliases: F14L17.12, F14L17_12; (*SWP) sp|P52551|MYBB_XENLA (e_value=6e-25) Myb-related protein B OS=Xenopus laevis GN=mybl2; Solyc05g007160.2.1 genomic_reference:SL2.40ch05 gene_region:1752928-1757049 transcript_region:SL2.40ch05:1752928..1757049- go_terms:GO:0003700 functional_description:"Transcription factor C-MYB (AHRD V1 *-** Q766Z9_ORYLA); contains Interpro domain(s) IPR015495 Myb transcription factor " 1 7 11 20 opLeV0100000144 sgn|U226712 CGCTTCAGAGTTCCTCATACGTAGCTGTGCTAGAAGTAATCTTCGCCTGAAAAACTGACCGAGATAGACG Experimental SGN-U567340 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157337840|emb|CAO38884.1| (e_value=0) unnamed; (*ATH) AT1G04950.3 (e_value=2e-171) Symbol: None | similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g54360.2); similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g54360.1); similar to SPCC16C4.18c [Schizosaccharomyces pombe] (GB:CAA20756.1); contains InterPro dom... ; (*SWP) sp|Q91857|TAF6_XENLA (e_value=5e-71) Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis GN=taf6; Solyc10g006100.2.1 genomic_reference:SL2.40ch10 gene_region:837357-845861 transcript_region:SL2.40ch10:837357..845861- go_terms:GO:0005515,GO:0003700 functional_description:"Transcription initiation factor TFIID subunit 6 (AHRD V1 **** B6K6E4_SCHJY); contains Interpro domain(s) IPR011442 Protein of unknown function DUF1546 " 1 5 11 20 opLeV0100000145 sgn|U216747 TATTTCCAACAGAGGGGAATCGACTACGAGAAAGCAATGGCTGCAATGATATCGGGTTTCTGCAGAGACG Experimental SGN-U574526 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|60752251|gb|AAX36074.1| (e_value=0) non-intrinsic ABC protein [Nicotiana benthamiana]; (*ATH) AT4G04770.1 (e_value=0) | Symbol: None | ATP-binding-cassette transporter (ABC1), Identical to the protein described in PMID:11156608 and note that sequence was not deposited into GenBank by the authors. | chr4:2427798-2429848 REVERSE | Aliases: T4B21.16, T4B21_16; (*SWP) sp|Q9ZS97|NAP1_ARATH (e_value=0) Protein NAP1, chloroplastic OS=Arabidopsis thaliana GN=NAP1; Solyc03g031700.2.1 genomic_reference:SL2.40ch03 gene_region:8445318-8448659 transcript_region:SL2.40ch03:8445318..8448659- go_terms:GO:0005515 functional_description:"ABC transporter FeS assembly protein SufB (AHRD V1 ***- C7JBP7_ACEP3); contains Interpro domain(s) IPR010231 SUF system FeS cluster assembly, SufB " 1 3 11 20 opLeV0100000146 sgn|U222717 AAATCGAGTGTCGATCATGACATGACACCAGGCGTTCCTCCTGAGGACATTGAGAAGAGGAAACATGAGC Experimental SGN-U572897 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157344078|emb|CAO69011.1| (e_value=2e-69) unnamed; (*ATH) AT3G54760.1 (e_value=1e-43) Symbol: None | dentin sialophosphoprotein-related, contains weak similarity to Swiss-Prot:Q9NZW4 dentin sialophosphoprotein precursor (Dentin phosphophoryn DPP, Dentin sialoprotein DSP) (Homo sapiens) | chr3:20280637-20283015 REVERSE | Aliases: T5N2... ; Solyc04g049950.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:44036710-44038071 transcript_region:SL2.40ch04:44036710..44038071+ functional_description:"PWWP domain protein-like (AHRD V1 *-*- Q6Z3Y5_ORYSJ)" 1 1 11 20 opLeV0100000147 sgn|U224563 CGACTCTCATTCCTCCGAGACGCCAGTGATAGAGTGGAATTAGAGGATAGAGAAGATGGATCTGAACTTT Experimental SGN-U568139 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157358586|emb|CAO66262.1| (e_value=2e-55) unnamed; (*ATH) AT5G24360.1 (e_value=2e-54) | Symbol: None | protein kinase family protein / Ire1 homolog-1 (IRE1-1), identical to Ire1 homolog-1 (Arabidopsis thaliana) GI:15277137; cDNA Ire1 homolog-1 GI:15277136; | chr5:8316446-8319980 FORWARD | Aliases: K16H17.7, K16H17_7; (*SWP) sp|Q09499|IRE1_CAEEL (e_value=2e-29) Serine/threonine-protein kinase/endoribonuclease ire-1 OS=Caenorhabditis elegans GN=ire-1; Solyc04g082620.2.1 genomic_reference:SL2.40ch04 gene_region:63835558-63843020 transcript_region:SL2.40ch04:63835558..63843020- go_terms:GO:0006468,GO:0006397 functional_description:"Serine threonine-protein kinase (AHRD V1 *-*- Q16QF5_AEDAE); contains Interpro domain(s) IPR010513 Ribonuclease L " 3 7 3 20 opLeV0100000148 sgn|U227928 TGAGGTCCATCCTAATGTATCTCGATAAATTGACTGCAGAGGAGGTCATCCACTTAGAACTCTCAACCGG Experimental SGN-U567974 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|116787642|gb|ABK24588.1| (e_value=6e-106) unknown; (*ATH) AT1G22170.1 (e_value=1e-107) Symbol: None | phosphoglycerate/bisphosphoglycerate mutase family protein, similar to SP:P31217 Phosphoglycerate mutase 1 (EC 5.4.2.1) {Escherichia coli O157:H7}; contains Pfam profile PF00300: phosphoglycerate mutase family | chr1:7826278-7828307 F... ; (*SWP) sp|Q6MEW4|GPMA_PARUW (e_value=6e-70) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Protochlamydia amoebophila (strain UWE25) GN=gpmA; Solyc04g054820.2.1 genomic_reference:SL2.40ch04 gene_region:52438014-52442516 transcript_region:SL2.40ch04:52438014..52442516+ go_terms:GO:0046538 functional_description:"2 3-bisphosphoglycerate-dependent phosphoglycerate mutase (AHRD V1 **** D1R850_9CHLA); contains Interpro domain(s) IPR005952 Phosphoglycerate mutase 1 " 3 5 3 20 opLeV0100000149 sgn|U227979 GACAAGACTAAGGCATGTGTGCACAAACGCCTCAGCTACATTGCCTTCTACTAAGCGCCCCAAGAGCAGC Experimental SGN-U563160 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|83630761|gb|ABC26878.1| (e_value=1e-112) NRC1; (*ATH) AT3G07040.1 (e_value=5e-26) | Symbol: None | disease resistance protein RPM1 (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. Identical to RPM1 (gi:1361985) | chr3:2225958-2229030 REVERSE | Aliases: F17A9.20; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=4e-33) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16; \N \N 3 3 3 20 opLeV0100000150 sgn|U214622 ACCTGCCGTGTTTTTAAGCAAGACGATTCCTTGTCTTGCAGCTTCACGAGCTAGCTCTTGGTGATCTTCA Experimental SGN-U581436 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|37359708|dbj|BAC98299.1| (e_value=3e-61) LEXYL2 [Lycopersicon esculentum]; (*ATH) AT5G09730.1 (e_value=4e-40) | Symbol: None | glycosyl hydrolase family 3 protein, beta-xylosidase, Hypocrea jecorina, EMBL:Z69257 | chr5:3015248-3018263 REVERSE | Aliases: F17I14.80, F17I14_80; (*SWP) sp|P83344|XYNB_PRUPE (e_value=3e-27) Putative beta-D-xylosidase (Fragment) OS=Prunus persica; Solyc01g104950.2.1 genomic_reference:SL2.40ch01 gene_region:85031292-85035396 transcript_region:SL2.40ch01:85031292..85035396- go_terms:GO:0009044,GO:0046556 functional_description:"Alpha-L-arabinofuranosidase/beta-D-xylosidase (AHRD V1 **** D9D7L0_MALDO); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal " 3 1 3 20 opLeV0100000151 sgn|U219794 CAAGATTTCATGAATGAAGTAGCTACCATCGGAAGGATTCATCATGTCAACGTGGTTGGACTCGCAGGGT Experimental SGN-U575322 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157355875|emb|CAO49732.1| (e_value=1e-126) unnamed; (*ATH) AT5G38280.1 (e_value=2e-90) | Symbol: None | serine/threonine protein kinase (PR5K), identical to receptor serine/threonine kinase PR5K gi:1235680:gb:AAC49208 | chr5:15310351-15314553 REVERSE | Aliases: MXA21.170, MXA21_170; (*SWP) sp|Q9SYS7|CRK39_ARATH (e_value=9e-55) Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana GN=CRK39; Solyc02g079610.2.1 genomic_reference:SL2.40ch02 gene_region:38702972-38704500 transcript_region:SL2.40ch02:38702972..38704500+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor serine/threonine kinase (AHRD V1 **** O49202_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 3 5 7 20 opLeV0100000152 sgn|U222990 GGGACATCGTTGTGGATGAAGGAACTTACTACGAGGCTGAACCTCACTACGGATGGGCAGATGTTGTAGG Experimental SGN-U570629 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|30693557|ref|NP_174971.2| (e_value=1e-116) expressed protein [Arabidopsis thaliana]; (*ATH) AT1G42430.1 (e_value=1e-118) | Symbol: None | expressed protein | chr1:15893816-15896882 FORWARD | Aliases: F7F22.5, F7F22_5; Solyc04g082290.2.1 genomic_reference:SL2.40ch04 gene_region:63599630-63604934 transcript_region:SL2.40ch04:63599630..63604934- functional_description:"Os03g0133300 protein (Fragment) (AHRD V1 ***- Q0DVF0_ORYSJ)" 3 3 7 20 opLeV0100000153 sgn|U212927 CGACCAATCCTAGTGGAGGGAAATGCCATGCAATTCATTGTACGGCTAAT Experimental SGN-U593368 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|418127|sp|Q01591|TPM1_SOLLC (e_value=1e-70) RecName:; (*ATH) AT4G11650.1 (e_value=4e-42) Symbol: None | osmotin-like protein (OSM34), nearly identical to SP:P50700:OSL3_ARATH Osmotin-like protein OSM34 precursor {Arabidopsis thaliana}; contains Pfam profile PF00314: Thaumatin family | chr4:7024850-7026140 REVERSE | Aliases: T5C23.80, T5... ; (*SWP) sp|Q01591|TPM1_SOLLC (e_value=6e-72) Osmotin-like protein TPM-1 (Fragment) OS=Solanum lycopersicum GN=TPM-1; Solyc08g080650.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61050423-61051163 transcript_region:SL2.40ch08:61050423..61051163+ go_terms:GO:0005515 functional_description:"Osmotin-like protein (Fragment) (AHRD V1 **-- Q8S4L1_SOLNI); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related " 3 1 7 20 opLeV0100000154 sgn|U231407 CAGCTAACCCTATCGTTTGCCAGCCTCGTTTAGTTTTAATGTACTGTTAAGGAGAAGTGTCTTGAAATGT Experimental SGN-U570092 Tomato 200607#2 [3 ESTs aligned] \N \N 3 7 11 20 opLeV0100000155 sgn|U215151 GACCTGGACTTTTGCGCGAAGCTGGCTAAGGAAGAATCTCTGATAATTTTACCAGGTGTTGCTGTAGGAC Experimental SGN-U563404 Tomato 200607#2 [28 ESTs aligned] (*GB) gi|157344403|emb|CAO69786.1| (e_value=3e-168) unnamed; (*ATH) AT5G36160.1 (e_value=2e-145) | Symbol: None | aminotransferase-related, similar to nicotianamine aminotransferase B GI:6469087 from (Hordeum vulgare subsp. vulgare) | chr5:14250343-14252364 REVERSE | Aliases: MAB16.11, MAB16_11; (*SWP) sp|Q8QZR1|ATTY_MOUSE (e_value=2e-69) Tyrosine aminotransferase OS=Mus musculus GN=Tat; Solyc07g053720.2.1 genomic_reference:SL2.40ch07 gene_region:59464896-59468538 transcript_region:SL2.40ch07:59464896..59468538- go_terms:GO:0004838 functional_description:"Tyrosine aminotransferase-like protein (AHRD V1 **** Q9LVY1_ARATH); contains Interpro domain(s) IPR005958 Tyrosine/nicotianamine aminotransferase " 3 5 11 20 opLeV0100000156 sgn|U216651 ATAATGGGTTTTCTTCACAAGCTATGGGACGATACACTTGCCGGCCCGGCACCGGAATCGGGGTTAGGAA Experimental SGN-U576365 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|27802109|gb|AAO21304.1| (e_value=2e-30) auxin-repressed protein-like protein [Nicotiana tabacum]; Solyc06g063060.2.1 genomic_reference:SL2.40ch06 gene_region:36201579-36203266 transcript_region:SL2.40ch06:36201579..36203266- functional_description:"Auxin-repressed protein-like protein (AHRD V1 **-- Q84KS0_TOBAC); contains Interpro domain(s) IPR008406 Dormancyauxin associated " 3 3 11 20 opLeV0100000157 sgn|U219224 TCCCAGCTGATCATATAACAAGTTGCAGAATGGCGATTAATAACAGAGCAAGATTGGACCCTCCATTGCC Experimental SGN-U565027 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|147770378|emb|CAN78155.1| (e_value=4e-170) hypothetical; (*ATH) AT5G42830.1 (e_value=6e-148) Symbol: None | transferase family protein, similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase, Dianthus caryophyllus (gi:2239091); contains Pfam transferase family domain PF002458 | chr5:17193612-17195246 FORWARD | Aliases: MBD2.2, MBD2_2... ; (*SWP) sp|Q9SND9|Y3028_ARATH (e_value=9e-67) Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280; Solyc04g078660.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:60952860-60954206 transcript_region:SL2.40ch04:60952860..60954206+ go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl transferase (AHRD V1 **-* D2XJ64_9MAGN); contains Interpro domain(s) IPR003480 Transferase " 3 1 11 20 opLeV0100000158 sgn|U222408 CACAAGCGCTTTATTGAAGTAGTGGCGCACTTAGGTATCAAAGGGGCTGTGCCGAAAACAATTATGCAGC Experimental SGN-U570199 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|71067060|dbj|BAE16282.1| (e_value=1e-145) StPCL1 [Solanum tuberosum]; (*ATH) AT3G46640.1 (e_value=3e-59) Symbol: LUX | Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock. LU... ; (*SWP) sp|Q940D0|ARR1_ARATH (e_value=2e-18) Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1; Solyc06g076350.2.1 genomic_reference:SL2.40ch06 gene_region:43828645-43831301 transcript_region:SL2.40ch06:43828645..43831301+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *--* D6MKQ8_9ASPA); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class " 1 7 4 20 opLeV0100000159 sgn|U232722 GCTTGGATACGAGATTGAGGGCAAAGAACTTGATGACCTGTTCTGGCGATTCAAATCTGTGGCTGAGAAG Experimental SGN-U580754 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|7387849|sp|O04974|LEU1B_SOLPN (e_value=0) RecName:; (*ATH) AT1G74040.1 (e_value=0) Symbol: None | 2-isopropylmalate synthase 1 (IMS1), identical to 2-isopropylmalate synthase (IMS1) (Arabidopsis thaliana) GI:12330687; identical to cDNA 2-isopropylmalate synthase (IMS1) GI:12330686 | chr1:27845832-27849437 FORWARD | Aliases: F2P9.9... ; (*SWP) sp|O04974|LEU1B_SOLPN (e_value=0) 2-isopropylmalate synthase B OS=Solanum pennellii GN=IPMSB; Solyc06g053400.2.1 genomic_reference:SL2.40ch06 gene_region:32654699-32664611 transcript_region:SL2.40ch06:32654699..32664611+ go_terms:GO:0003852 functional_description:"2-isopropylmalate synthase 1 (AHRD V1 **** Q30DX9_9BRAS); contains Interpro domain(s) IPR005671 Bacterial 2-isopropylmalate synthase " 1 5 4 20 opLeV0100000160 sgn|U219410 CATTTACCAGTTTTGAGATGATTCACCGCTTCCTTGTAACCATGTTCCCCCCTGATCCTCATCCTCACAC Experimental SGN-U582245 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157350125|emb|CAO40063.1| (e_value=2e-135) unnamed; (*ATH) AT2G47490.1 (e_value=4e-121) | Symbol: None | mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein | chr2:19494316-19496689 FORWARD | Aliases: T30B22.21; (*SWP) sp|P39953|YEA6_YEAST (e_value=6e-50) Probable mitochondrial carrier YEL006W OS=Saccharomyces cerevisiae GN=YEL006W; Solyc09g075490.2.1 genomic_reference:SL2.40ch09 gene_region:62687636-62694652 transcript_region:SL2.40ch09:62687636..62694652- go_terms:GO:0051724 functional_description:"Mitochondrial carrier like protein (AHRD V1 ***- Q4A3J5_ARATH); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 " 1 3 4 20 opLeV0100000161 sgn|U225957 CCATTTGTTGTGGTGGCTAAATATCAAAAATAGGGTTGTAGCCAGGGTTATTCCCTGCCCTGGCACAAGA Experimental SGN-U575709 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147785381|emb|CAN66285.1| (e_value=4e-35) hypothetical; (*ATH) AT2G13620.1 (e_value=2e-37) | Symbol: None | cation/hydrogen exchanger, putative (CHX15), monovalent cation:proton antiporter family 2 (CPA2) member, PMID:11500563 | chr2:5685088-5687703 FORWARD | Aliases: T10F5.16, T10F5_16; (*SWP) sp|Q9P7I1|KHA1_SCHPO (e_value=3e-15) K(+)/H(+) antiporter 1 OS=Schizosaccharomyces pombe GN=kha1; Solyc08g016160.2.1 genomic_reference:SL2.40ch08 gene_region:6867711-6871990 transcript_region:SL2.40ch08:6867711..6871990- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger " 1 1 4 20 opLeV0100000162 sgn|U229958 ATCTTCTGGCCTTAGGAGATGTCGTTTTGAACCATCGATGTGCTCACAAACAGAGTCCGAATGGTGTTTG Experimental SGN-U584475 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157341253|emb|CAO49160.1| (e_value=7e-151) unnamed; (*ATH) AT1G69830.1 (e_value=9e-111) Symbol: AMY3 | Encodes a plastid-localized α-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms. | chr1:26291944-262... ; (*SWP) sp|P00693|AMY1_HORVU (e_value=2e-80) Alpha-amylase type A isozyme OS=Hordeum vulgare GN=AMY1.1; Solyc02g066950.2.1 genomic_reference:SL2.40ch02 gene_region:31778592-31790811 transcript_region:SL2.40ch02:31778592..31790811+ go_terms:GO:0016020,GO:0005975 functional_description:"Alpha amylase 2 (IC) (AHRD V1 *-*- Q010P9_OSTTA); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region " 1 3 8 20 opLeV0100000163 sgn|U215050 CACAAGCAGTCGAAGAAGCTTACAAAGGTGTAGAATGTGGAGATGGAGGCCCATTTGGTGCAGTTGTTGT Experimental SGN-U591370 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|76160949|gb|ABA40438.1| (e_value=1e-35) unknown [Solanum tuberosum]; (*ATH) AT5G28050.1 (e_value=4e-34) Symbol: None | cytidine/deoxycytidylate deaminase family protein, similar to SP:O34598 Guanine deaminase (EC 3.5.4.3) (Guanase) (Guanine aminase) (Guanine aminohydrolase) (GAH) (GDEase) {Bacillus subtilis}; contains Pfam profile PF00383: Cytidine an... ; Solyc01g097880.2.1 genomic_reference:SL2.40ch01 gene_region:80335950-80341370 transcript_region:SL2.40ch01:80335950..80341370+ go_terms:GO:0016787,GO:0003824 functional_description:"Deaminase (AHRD V1 *-*- D6B5U0_9ACTO); contains Interpro domain(s) IPR016193 Cytidine deaminase-like " 1 1 8 20 opLeV0100000164 sgn|U237520 AATGTAACTGGTGGCCCCCTTATTCCCATAACCCAACCCCTCTTTAAGGGGCTATGCCTTGGGTGTTAGA Experimental SGN-U592059 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|37983566|gb|AAR06290.1| (e_value=7e-29) 5'-aminoimidazole ribonucleotide synthetase [Solanum tuberosum]; (*ATH) AT3G55010.1 (e_value=2e-20) Symbol: None | phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5), identical to phosphoribosylformylglycinamidine cyclo-ligase, chloroplast precursor SP:Q05728 from (Arabidops... ; (*SWP) sp|P52424|PUR5_VIGUN (e_value=3e-20) Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial OS=Vigna unguiculata GN=PUR5; \N \N 1 7 12 20 opLeV0100000165 sgn|U220477 TCCTGGTGGACTAGGAGCTGCACTGTTGGCTTGTGGCGGACTTACTAAAGTTAAGCTGCAGACATCATTT Experimental SGN-U580509 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157337013|emb|CAO21359.1| (e_value=5e-155) unnamed; (*ATH) AT5G01720.1 (e_value=5e-156) | Symbol: None | F-box family protein (FBL3), contains similarity to leucine-rich repeats containing F-box protein FBL3 GI:5919219 from (Homo sapiens) | chr5:266720-270480 REVERSE | Aliases: F7A7.240, F7A7_240; (*SWP) sp|Q8RWU5|FBL3_ARATH (e_value=4e-155) F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3; Solyc10g076290.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58549205-58554411 transcript_region:SL2.40ch10:58549205..58554411+ go_terms:GO:0005515,GO:0004842 functional_description:"F-box/LRR-repeat protein 3 (AHRD V1 ***- FBL3_ARATH); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype " 1 5 12 20 opLeV0100000166 sgn|U222873 ATGCTGTCTCCGTTGCCGGTATAGTCCTAACTACTCAAGCAATAATGGTAGAGAAAACCAAGGAGCCCAA Experimental SGN-U568698 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157338624|emb|CAO41975.1| (e_value=0) unnamed; (*ATH) AT5G18820.1 (e_value=0) Symbol: EMB3007 | chaperonin, putative, similar to SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit, CPN-60 alpha)(Pisum sativum); contains Pfam:PF00118 domain, TCP-1/cpn60 chap... ; (*SWP) sp|P08926|RUBA_PEA (e_value=0) RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum; Solyc02g068730.2.1 genomic_reference:SL2.40ch02 gene_region:33243641-33248793 transcript_region:SL2.40ch02:33243641..33248793- go_terms:GO:0042623 functional_description:"chaperonin (AHRD V1 ***- B2IXD2_NOSP7); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 " 1 3 12 20 opLeV0100000167 sgn|U225740 ATCTTCAGGTGAAAATTGAACACAGAAAATACGATCCAGATCCAATCCCCTCTCAGCGGCGATTAGCAGT Experimental SGN-U580955 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|41393668|gb|AAS02074.1| (e_value=5e-14) auxin and ethylene responsive GH3-like protein [Capsicum chinense]; (*ATH) AT2G14960.1 (e_value=6e-13) | Symbol: GH3.1 | encodes a protein similar to IAA-amido synthases. Lines carrying an insertion in this gene are hypersensitive to auxin. | chr2:6458454-6460752 REVERSE | Aliases: T26I20.12, T26I20_12, GH3.1; (*SWP) sp|O82333|GH31_ARATH (e_value=6e-12) Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1; Solyc01g107400.2.1 genomic_reference:SL2.40ch01 gene_region:86730679-86731267 transcript_region:SL2.40ch01:86730679..86731267- functional_description:"Indole-3-acetic acid-amido synthetase GH3.8 (AHRD V1 ***- B6U4E2_MAIZE)" 1 1 12 20 opLeV0100000168 sgn|U219453 ATGCCTTGGTGCTCCAATAGGCCAAGGTTATGGTCTTACCGAGACCTGTGCTGGTGGAACATTTAGTGAT Experimental SGN-U570952 Tomato 200607#2 [31 ESTs aligned] (*GB) gi|157336034|emb|CAO61864.1| (e_value=0) unnamed; (*ATH) AT1G77590.1 (e_value=0) Symbol: None | long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS9), similar to LACS 3 (SP:O95573) from Homo Sapiens, LACS 3 (SP:Q63151) from Rattus norvegicus; contains Pfam HMM hit: AMP-binding e... ; (*SWP) sp|Q5R668|ACSL3_PONAB (e_value=1e-160) Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3; Solyc11g018580.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8753165-8759597 transcript_region:SL2.40ch11:8753165..8759597+ go_terms:GO:0008152 functional_description:"Long-chain-fatty-acid--CoA ligase 4 (AHRD V1 ***- C0HA93_SALSA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase " 3 7 4 20 opLeV0100000169 sgn|U225952 AGACGAGTTGGCTGCGCTACTGGCGGAAGCTGTGCAAGGAAACAAGGTAGAAGACCGGAGACTTCGTGCA Experimental SGN-U567180 Tomato 200607#2 [3 ESTs aligned] Solyc03g114710.2.1 genomic_reference:SL2.40ch03 gene_region:58661374-58663109 transcript_region:SL2.40ch03:58661374..58663109- go_terms:GO:0080044 functional_description:"Glucosyltransferase (AHRD V1 **** B5MGN9_PHYAM); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase " 3 5 4 20 opLeV0100000170 sgn|U234930 ATAAAAAATGGCGCCTTATCTGCGCGCCTTTTTATTTGTTCTCCCCCCCAAAAAAACAAAATACTCCGTT Experimental \N \N \N \N 3 3 4 20 opLeV0100000171 sgn|U217809 CTCCTCCGGCATATGTGCTCAATACTCAGACTCTTGACAAGGAGCAAGGCATAGCAATCCTTACTAAAGC Experimental SGN-U569554 Tomato 200607#2 [33 ESTs aligned] (*GB) gi|157351235|emb|CAO41422.1| (e_value=2e-147) unnamed; (*ATH) AT2G40290.1 (e_value=5e-140) Symbol: None | eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative, similar to Swiss-Prot:P05198 eukaryotic translation initiation factor 2 subunit 1 (Eukaryotic translation initiation factor 2 a... ; (*SWP) sp|P56286|IF2A_SCHPO (e_value=4e-75) Eukaryotic translation initiation factor 2 subunit alpha OS=Schizosaccharomyces pombe GN=tif211; Solyc03g095840.2.1 genomic_reference:SL2.40ch03 gene_region:50975441-50981714 transcript_region:SL2.40ch03:50975441..50981714+ go_terms:GO:0005515,GO:0003743 functional_description:"Eukaryotic translation initiation factor 2 alpha subunit family protein expressed (AHRD V1 **** Q10MT2_ORYSJ); contains Interpro domain(s) IPR011488 Eukaryotic translation initiation factor 2, alpha subunit " 3 1 4 20 opLeV0100000172 sgn|U224362 CGACCATCTTTGGTTCCAACAAGTGTGGGTTGAGATGCTCCAACAGCCATAATTGCACCCTAGACAAGAG Experimental SGN-U575010 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|193290726|gb|ACF17671.1| (e_value=2e-108) putative; (*ATH) AT1G34430.1 (e_value=9e-105) Symbol: EMB3003 | dihydrolipoamide S-acetyltransferase, putative, similar to dihydrolipoamide S-acetyltransferase (LTA2) (Arabidopsis thaliana) GI:5881963; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain),... ; (*SWP) sp|Q4ULG1|ODP2_RICFE (e_value=5e-26) Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia felis GN=pdhC; Solyc11g017250.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8083498-8089958 transcript_region:SL2.40ch11:8083498..8089958+ go_terms:GO:0008152,GO:0016021 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 ***- A5GUY8_SYNR3); contains Interpro domain(s) IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain " 3 7 8 20 opLeV0100000173 sgn|U226700 TGTACGAAACAGGGTCAATCCGTGTACCAAAACCATATAAAGTTGGATCTCTGCCAACTGGTGGCTCGTA Experimental SGN-U564697 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157349248|emb|CAO24394.1| (e_value=1e-140) unnamed; (*ATH) AT3G61080.1 (e_value=3e-134) | Symbol: None | fructosamine kinase family protein, contains Pfam PF03881: Fructosamine kinase | chr3:22618105-22620074 FORWARD | Aliases: T27I15.170; (*SWP) sp|Q9LEW8|FN3X_ARATH (e_value=4e-125) Uncharacterized protein At3g61080 OS=Arabidopsis thaliana GN=At3g61080; Solyc01g091780.2.1 genomic_reference:SL2.40ch01 gene_region:77112343-77117902 transcript_region:SL2.40ch01:77112343..77117902+ functional_description:"Fructosamine kinase family protein (AHRD V1 ***- D7LS54_ARALY); contains Interpro domain(s) IPR016477 Fructosamine/Ketosamine-3-kinase " 3 5 8 20 opLeV0100000174 sgn|U213848 AGTCACCGTAAAATTAACGTTCCCGCCACCGGAGACGATGATAGCAATCCGTCGACGTCTACTTCCACTA Experimental SGN-U569960 Tomato 200607#2 [66 ESTs aligned] (*GB) gi|118197979|gb|ABK78777.1| (e_value=8e-83) zinc; (*ATH) AT1G27730.1 (e_value=2e-25) | Symbol: None | Salt tolerance zinc finger protein responsive to chitin oligomers. | chr1:9648128-9649060 REVERSE | Aliases: T22C5.18, T22C5_18; Solyc01g107170.2.1 genomic_reference:SL2.40ch01 gene_region:86548794-86550092 transcript_region:SL2.40ch01:86548794..86550092+ go_terms:GO:0003700,GO:0016564 functional_description:"Zinc finger protein (AHRD V1 ***- A0T3Q5_SOLTU); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type " 3 3 8 20 opLeV0100000175 sgn|U218564 CCCTTCCCTTGGGGCAATATTGACCATATTGCAGCTATATAAGCTGATGTCATAAATAATGTAGAAATCC Experimental SGN-U594285 Tomato 200607#2 [1 ESTs aligned] Solyc08g066760.2.1 genomic_reference:SL2.40ch08 gene_region:52806347-52807980 transcript_region:SL2.40ch08:52806347..52807980+ functional_description:"Ankyrin repeat family protein (AHRD V1 **-- Q9LVG7_ARATH); contains Interpro domain(s) IPR002110 Ankyrin " 3 1 8 20 opLeV0100000176 sgn|U218988 CTATGATGTGGAAGATCTGGAGATGTTACTCGAGGCCTATTTCATGCAGTTGGAAGGCACTCGGAACAAG Experimental SGN-U573155 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|157349409|emb|CAO24627.1| (e_value=2e-159) unnamed; (*ATH) AT3G58970.1 (e_value=3e-144) | Symbol: None | magnesium transporter CorA-like family protein, contains Pfam profile PF01544: CorA-like Mg2+ transporter protein | chr3:21800491-21802336 REVERSE | Aliases: F17J16.20; Solyc01g103890.2.1 genomic_reference:SL2.40ch01 gene_region:84151906-84158425 transcript_region:SL2.40ch01:84151906..84158425- go_terms:GO:0015095 functional_description:"Magnesium transporter MRS2-4 (AHRD V1 **** MRS24_ARATH); contains Interpro domain(s) IPR002523 Mg2+ transporter protein, CorA-like " 3 7 12 20 opLeV0100000177 sgn|U225246 AGAACCCAAGAGAGTTAAAAGATGATACCAGCGCTTCACGTGAAGAAAAACTGGTGGTGACACGAGCTTT Experimental SGN-U591342 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157342067|emb|CAO64180.1| (e_value=7e-61) unnamed; (*ATH) AT3G48425.1 (e_value=3e-54) Symbol: None | endonuclease/exonuclease/phosphatase family protein, similar to SP:P51173:APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)(Class II apurinic/apyrimidinic(AP)-endonuclease) {Dictyostelium discoideum}; contains Pfam p... ; Solyc03g111600.2.1 genomic_reference:SL2.40ch03 gene_region:56288918-56298764 transcript_region:SL2.40ch03:56288918..56298764- go_terms:GO:0016491 functional_description:"Exodeoxyribonuclease III family protein expressed (AHRD V1 ***- Q2QTX4_ORYSJ); contains Interpro domain(s) IPR004808 Exodeoxyribonuclease III xth " 3 5 12 20 opLeV0100000178 sgn|U221588 GGAAAATTGTTTGGTTCATAGACCTTTACTCCAGCAGCTTCTTGTATGACTTCTAGCCAGAAAGCAAGCC Experimental SGN-U567445 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157350463|emb|CAO40512.1| (e_value=5e-77) unnamed; (*ATH) AT2G29420.1 (e_value=3e-47) | Symbol: None | glutathione S-transferase, putative | chr2:12625013-12625976 REVERSE | Aliases: F16P2.20, F16P2_20; (*SWP) sp|Q03663|GSTX2_TOBAC (e_value=3e-52) Probable glutathione S-transferase OS=Nicotiana tabacum; Solyc09g063150.2.1 genomic_reference:SL2.40ch09 gene_region:56794180-56795954 transcript_region:SL2.40ch09:56794180..56795954+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase (AHRD V1 **** Q8H9E5_CUCMA); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal " 3 3 12 20 opLeV0100000179 sgn|U219170 GATACGTTCCACTGATTAAGAAAATCGAGCTTCAATCACGCAAGGGCCTCATCATTGCAACCCTCTCTCG Experimental SGN-U578370 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|115472733|ref|NP_001059965.1| (e_value=2e-111) Os07g0557100; (*ATH) AT4G05120.1 (e_value=5e-107) Symbol: None | equilibrative nucleoside transporter, putative (ENT3), identical to putative equilibrative nucleoside transporter ENT3 (Arabidopsis thaliana) GI:16518993; contains similarity to SWISS-PROT:O54699 equilibrative nucleoside transporter 2... ; Solyc02g079350.2.1 genomic_reference:SL2.40ch02 gene_region:38520995-38523798 transcript_region:SL2.40ch02:38520995..38523798- go_terms:GO:0005337 functional_description:"Equilibrative nucleoside transporter (AHRD V1 **** B9H1Z9_POPTR); contains Interpro domain(s) IPR002259 Delayed-early response protein/equilibrative nucleoside transporter " 3 1 12 20 opLeV0100000180 sgn|U233123 AAAGCAAGGTTAACTCCAACTTCCTCTCGGGTTAAAGGGACAATATACAGAATCGTATCTGGCAGGGATT Experimental SGN-U578540 Tomato 200607#2 [3 ESTs aligned] \N \N 2 3 1 20 opLeV0100000181 sgn|U213451 GTACAATTATAACTCGAATACTTGTCAAGCTGGTAAAGTATGTGGACACTATACTCAGGTGGTGTGGCGT Experimental SGN-U579345 Tomato 200607#2 [105 ESTs aligned] (*GB) gi|182410392|gb|ACB88202.1| (e_value=9e-107) PR1; (*ATH) AT2G14580.1 (e_value=6e-56) Symbol: None | pathogenesis-related protein, putative, similar to SP:P33154 Pathogenesis-related protein 1 precursor (PR-1) {Arabidopsis thaliana}; contains Pfam profile PF00188: SCP-like extracellular protein | chr2:6232617-6233306 REVERSE | Aliase... ; (*SWP) sp|P11670|PRB1_TOBAC (e_value=3e-83) Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum; Solyc01g106630.2.1 genomic_reference:SL2.40ch01 gene_region:86187797-86190869 transcript_region:SL2.40ch01:86187797..86190869- functional_description:"Unknown Protein (AHRD V1)" 2 1 1 20 opLeV0100000182 sgn|U216458 CGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGT Experimental SGN-U569423 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|154721452|gb|ABS84825.1| (e_value=8e-48) thioredoxin; (*ATH) AT3G15360.1 (e_value=3e-46) | Symbol: None | thioredoxin M-type 4, chloroplast (TRX-M4), nearly identical to SP:Q9SEU6 Thioredoxin M-type 4, chloroplast precursor (TRX-M4) {Arabidopsis thaliana} | chr3:5188395-5189704 FORWARD | Aliases: MJK13.20; (*SWP) sp|Q9SEU6|TRXM4_ARATH (e_value=2e-45) Thioredoxin M-type 4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360; Solyc12g013810.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4597746-4599971 transcript_region:SL2.40ch12:4597746..4599971- go_terms:GO:0045454 functional_description:"Thioredoxin (AHRD V1 ***- A7LNX7_9CARY); contains Interpro domain(s) IPR005746 Thioredoxin " 2 7 5 20 opLeV0100000183 sgn|U221212 CATGGTTGGTTCAAGCTCACCCTTGTATCTGTCAATACTGAGCCAACTAATGGCAACAGGGAGTTCTCAG Experimental SGN-U568052 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147857164|emb|CAN79228.1| (e_value=7e-152) hypothetical; (*ATH) AT3G60320.1 (e_value=2e-150) | Symbol: P9L | expressed protein, contains Pfam profiles: PF04782: protein of unknown function (DUF632), PF04783: protein of unknown function (DUF630) | chr3:22302861-22306346 REVERSE | Aliases: F27H5.110, P9L; Solyc01g090270.2.1 genomic_reference:SL2.40ch01 gene_region:75692316-75698111 transcript_region:SL2.40ch01:75692316..75698111- go_terms:GO:0003677 functional_description:"Bzip-like transcription factor-like (AHRD V1 *-*- Q7X997_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 " 2 5 5 20 opLeV0100000184 sgn|U242940 TTCGGGGGTGGCCCCTTTCCCTTGGGGTTGGTTTTCAAGAACCCCTTTTTAATAAACTTGGGGGAAACCT Experimental SGN-U603974 Tomato 200607#2 [1 ESTs aligned] \N \N 2 3 5 20 opLeV0100000185 sgn|U214340 AATCAGGATTCTGGCATGTATGCTGCTGGAGCAGCCTCTAATGGCTACGGGAATCAGCAGCCTGTTAGCT Experimental SGN-U597086 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|82621158|gb|ABB86267.1| (e_value=3e-58) DNA; (*ATH) AT3G19130.1 (e_value=3e-36) Symbol: ATRBP47B | RNA-binding protein, putative, similar to RNA Binding Protein 47 (Nicotiana plumbaginifolia) GI:9663769, DNA binding protein ACBF GB:AAC49850 from (Nicotiana tabacum); contains InterPro entry IPR000504: RNA-binding region RNP-1 (R... ; (*SWP) sp|O60176|YG41_SCHPO (e_value=2e-19) Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c; Solyc01g108500.2.1 genomic_reference:SL2.40ch01 gene_region:87565501-87571455 transcript_region:SL2.40ch01:87565501..87571455- go_terms:GO:0005515 functional_description:"Polyadenylate-binding protein (AHRD V1 **-* PABP_DROME); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait " 2 1 5 20 opLeV0100000186 sgn|U224345 AAGCAGAAGAGTCTCAAGCTTACAGCATTACGGAGAAGAGGATAGGCAACAAAAGGGCTGCTGAATTGCT Experimental SGN-U574809 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157335185|emb|CAO61015.1| (e_value=8e-64) unnamed; (*ATH) AT1G75670.1 (e_value=5e-59) | Symbol: None | expressed protein, similar to DNA-dependent RNA polymerase 19 kDa polypeptide (EC 2.7.7.6) (A43) (Swiss-Prot:O43036) (Schizosaccharomyces pombe) | chr1:28418865-28420288 REVERSE | Aliases: F10A5.14, F10A5_14; Solyc05g054140.2.1 genomic_reference:SL2.40ch05 gene_region:63243125-63246714 transcript_region:SL2.40ch05:63243125..63246714+ go_terms:GO:0006350 functional_description:"Nucleic acid-binding OB-fold (AHRD V1 ***- A2Q5X5_MEDTR); contains Interpro domain(s) IPR005576 RNA polymerase Rpb7, N-terminal " 2 7 9 20 opLeV0100000187 sgn|U213177 CATCAGTACCAGGTGGTGGGTAGAGCTCTCCCATCAGAGACCGATGAACACCCAAAGATCTACCGCATGA Experimental SGN-U578361 Tomato 200607#2 [60 ESTs aligned] (*GB) gi|78191408|gb|ABB29925.1| (e_value=1e-99) unknown [Solanum tuberosum]; (*ATH) AT2G34480.1 (e_value=3e-92) | Symbol: None | 60S ribosomal protein L18A (RPL18aB) | chr2:14539787-14541280 REVERSE | Aliases: F13P17.34; (*SWP) sp|Q9ATF5|RL18A_CASSA (e_value=2e-93) 60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A; Solyc06g065590.2.1 genomic_reference:SL2.40ch06 gene_region:37366957-37369341 transcript_region:SL2.40ch06:37366957..37369341- go_terms:GO:0005840 functional_description:"60S ribosomal protein L18a (AHRD V1 ***- D2D962_9ROSI); contains Interpro domain(s) IPR002670 Ribosomal protein L18ae " 2 5 9 20 opLeV0100000188 sgn|U216558 GGAGCGCATTAAGGATGATTTCATGTCAAAATATGGGAGTGGGAAGGCTGCGACAGCTCCTCCTAATAGC Experimental SGN-U572420 Tomato 200607#2 [38 ESTs aligned] (*GB) gi|118481984|gb|ABK92923.1| (e_value=2e-99) unknown; (*ATH) AT2G33120.1 (e_value=5e-93) Symbol: None | synaptobrevin-related protein / vesicle-associated membrane protein 722 (VAMP722) (SAR1), identical to r to Vesicle-associated membrane protein 722 (AtVAMP722) Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis thaliana}; identi... ; (*SWP) sp|P47192|VA722_ARATH (e_value=5e-92) Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722; Solyc02g069150.2.1 genomic_reference:SL2.40ch02 gene_region:33674501-33679880 transcript_region:SL2.40ch02:33674501..33679880+ go_terms:GO:0005484 functional_description:"Vesicle-associated membrane protein 7B (AHRD V1 **-- D7KE73_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin " 2 3 9 20 opLeV0100000189 sgn|U219920 ACACGGACGATCTCATTAAAAGTCTTCTAGTGGCTTTGTTTGTTGCGGGAACAGAGACCACATCGATGAC Experimental SGN-U564582 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|85068600|gb|ABC69380.1| (e_value=2e-147) CYP81C6v2; (*ATH) AT5G10600.1 (e_value=2e-105) | Symbol: None | cytochrome P450 family protein, similar to Cytochrome P450 91A1 (SP:Q9FG65) {Arabidopsis thaliana} ; cytochrome P450, Helianthus tuberosus, EMBL:HTCYP81L | chr5:3351038-3352880 FORWARD | Aliases: F12B17.50, F12B17_50; (*SWP) sp|O65790|C81F1_ARATH (e_value=2e-88) Cytochrome P450 81F1 OS=Arabidopsis thaliana GN=CYP81F1; \N \N 2 1 9 20 opLeV0100000190 sgn|U217697 GTGGTTCCACACAGGCGATGTTGGCGAGTGGCAACCTAATGGTAGCTTGAAAATAATTGATCGCAAGAAG Experimental SGN-U575624 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|193290710|gb|ACF17663.1| (e_value=0) putative; (*ATH) AT4G23850.1 (e_value=1e-165) | Symbol: None | long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase, nearly identical to acyl-CoA synthetase (MF7P) from Brassica napus (gi:1617270) | chr4:12403477-12408343 REVERSE | Aliases: T32A16.20, T32A16_20; (*SWP) sp|O88813|ACSL5_RAT (e_value=6e-79) Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5; Solyc08g082280.2.1 genomic_reference:SL2.40ch08 gene_region:62279956-62289714 transcript_region:SL2.40ch08:62279956..62289714- go_terms:GO:0004467 functional_description:"Long-chain-fatty-acid-CoA ligase (AHRD V1 **** B2WS80_ARAHA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase " 4 7 1 20 opLeV0100000191 sgn|U220091 CCGGATCATCCTAGTAACATGGAGCTTGATCATAAACCAGTTCCGAAACTTAGAGATGGTGGCTGGTTCG Experimental SGN-U592259 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118485882|gb|ABK94787.1| (e_value=1e-22) unknown; (*ATH) AT2G02240.1 (e_value=2e-17) | Symbol: None | F-box family protein / SKP1 interacting partner 3-related | chr2:592358-593601 REVERSE | Aliases: T16F16.3; (*SWP) sp|Q3E6P4|FB95_ARATH (e_value=2e-16) F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240; Solyc11g006740.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1346091-1347977 transcript_region:SL2.40ch11:1346091..1347977+ functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH)" 4 5 1 20 opLeV0100000192 sgn|U222064 TTTGACGCCGCACTTTTTTGTTTGCGGGGTAAAGGGGCTAATTTCAATTTCCCGGAAAATCCGCCGGAGA Experimental SGN-U562994 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|156571764|gb|ABU84809.1| (e_value=1e-49) putative; (*ATH) AT1G19210.1 (e_value=4e-44) Symbol: None | encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. | chr1:6626813-6627521 REVERSE | Alia... ; (*SWP) sp|Q84QC2|ERF17_ARATH (e_value=4e-43) Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017; Solyc12g009240.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2519864-2520610 transcript_region:SL2.40ch12:2519864..2520610- go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding " 4 3 1 20 opLeV0100000193 sgn|U216280 GCTAAAGAACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTG Experimental SGN-U578464 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|118489403|gb|ABK96505.1| (e_value=2e-78) unknown; (*ATH) AT5G53160.2 (e_value=3e-75) | Symbol: None | expressed protein, similar to unknown protein (pir::T02893) | chr5:21577944-21579486 FORWARD | Aliases: None; Solyc01g095700.2.1 genomic_reference:SL2.40ch01 gene_region:78645220-78647649 transcript_region:SL2.40ch01:78645220..78647649- go_terms:GO:0004872,GO:0042803 functional_description:"Abscisic acid receptor PYL8 (AHRD V1 **-* PYL8_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase " 4 1 1 20 opLeV0100000194 sgn|U218283 TGGACCTGGAAATCTCTGCCAGAATCAAGGTTCTCAAAAGTGGCTGAACT Experimental SGN-U575670 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157347126|emb|CAO17508.1| (e_value=4e-68) unnamed; (*ATH) AT1G09155.1 (e_value=1e-60) | Symbol: ATPP2-B15 | SKP1 interacting partner 3-related, low similarity to SKP1 interacting partner 3 (Arabidopsis thaliana) GI:10716951 | chr1:2949678-2950991 REVERSE | Aliases: ATPP2-B15; (*SWP) sp|O80494|P2B15_ARATH (e_value=1e-59) F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15; Solyc01g100000.2.1 genomic_reference:SL2.40ch01 gene_region:81846092-81847461 transcript_region:SL2.40ch01:81846092..81847461- go_terms:GO:0030246 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box " 4 7 5 20 opLeV0100000195 sgn|U220980 CAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCC Experimental SGN-U573478 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157358036|emb|CAO65074.1| (e_value=0) unnamed; (*ATH) AT1G08620.1 (e_value=0) Symbol: None | transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein, contains Pfam domains, PF02375: jmjN domain, PF02373: jmjC domain and PF02928: C5HC2 zinc finger | chr1:2737557-2743673 FORWARD | Aliases: F2... ; (*SWP) sp|Q3UXZ9|JAD1A_MOUSE (e_value=5e-91) Histone demethylase JARID1A OS=Mus musculus GN=Jarid1a; Solyc04g009990.2.1 genomic_reference:SL2.40ch04 gene_region:3303089-3310711 transcript_region:SL2.40ch04:3303089..3310711- go_terms:GO:0003700 functional_description:"Lysine-specific demethylase 5A (AHRD V1 *--- KDM5A_MOUSE); contains Interpro domain(s) IPR013129 Transcription factor jumonji " 4 5 5 20 opLeV0100000196 sgn|U223438 CCTCTAGGCGCAACTAATTGCAGTGAATCAGAGGCAGTAAATCAAGCCGTTTGCATAGTCGGGACACTTT Experimental SGN-U576449 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|6685538|sp|Q40554|EIF3A_TOBAC (e_value=9e-11) Eukaryotic; (*SWP) sp|Q40554|EIF3A_TOBAC (e_value=7e-12) Eukaryotic translation initiation factor 3 subunit A OS=Nicotiana tabacum GN=TIF3A1; \N \N 4 3 5 20 opLeV0100000197 sgn|U213012 GCGATGGGCGAAGAGCAGATTAACGCCGTTAAGGATGTTGGTACCAAGAATTAGTTATGTCATGGCAGCA Experimental SGN-U579140 Tomato 200607#2 [93 ESTs aligned] (*GB) gi|20138707|sp|Q9AXQ5|IF5A2_SOLLC (e_value=2e-87) RecName:; (*ATH) AT1G13950.1 (e_value=3e-77) | Symbol: None | eukaryotic translation initiation factor 5A-1 / eIF-5A 1, identical to SP:Q9XI91 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) {Arabidopsis thaliana} | chr1:4773573-4774838 FORWARD | Aliases: F16A14.17; (*SWP) sp|Q9AXQ5|IF5A2_SOLLC (e_value=1e-88) Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum; Solyc07g005560.2.1 genomic_reference:SL2.40ch07 gene_region:446870-450798 transcript_region:SL2.40ch07:446870..450798+ go_terms:GO:0047485 functional_description:"Eukaryotic translation initiation factor 5A (AHRD V1 ***- D6N3G5_GOSHI); contains Interpro domain(s) IPR019769 Translation elongation factor, IF5A, hypusine site " 4 1 5 20 opLeV0100000198 sgn|U214448 ATTCTGGAATATCTAAGACAATGCCCGAGCTTGATCTAACCCATCTTAGCACAGTAGTGAGAGGAAATAT Experimental SGN-U577091 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|557882|gb|AAC48932.1| (e_value=0) putative serine/threonine protein kinase; similar to product encoded by Lycopersicon pimpinellifolium Pto gene, GenBank Accession Number U02271; Fen is a member of the Pto gene family; (*ATH) AT3G46290.1 (e_value=5e-110) | Symbol: None | protein kinase, putative, similar to receptor-like protein kinase (Catharanthus roseus) gi:1644291:emb:CAA97692 | chr3:17023994-17026772 FORWARD | Aliases: F12M12.260; (*SWP) sp|Q9LX66|Y3290_ARATH (e_value=5e-109) Probable receptor-like protein kinase At3g46290 OS=Arabidopsis thaliana GN=At3g46290; Solyc05g013290.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:6387418-6388380 transcript_region:SL2.40ch05:6387418..6388380- go_terms:GO:0005515,GO:0004674 functional_description:"Pto-like serine/threonine kinase (AHRD V1 **** Q6W0C8_CAPCH); contains Interpro domain(s) IPR017442 Serine/threonine protein kinase-related " 4 7 9 20 opLeV0100000199 sgn|U219991 CCACTGTGAAGAGGTCCATCTCCAAGAGATGTGAATATGATGGTATCAGC Experimental SGN-U577755 Tomato 200607#2 [10 ESTs aligned] \N \N 4 5 9 20 opLeV0100000200 sgn|U223291 TTGCTCCAGAAGAGGTAAACTCTCCTGCGAGTATTAGGAGCTACTGGTCACTCAAAAATAGTGAGCATTT Experimental SGN-U585069 Tomato 200607#2 [14 ESTs aligned] \N \N 4 3 9 20 opLeV0100000201 sgn|U219127 GTCGATCGCTACCGTCCTCCGCCGTTGTAAAGCTCCTTGTAATTTCCTTGTTTTTGGTCTTACTCACGAA Experimental SGN-U571036 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|147780817|emb|CAN74915.1| (e_value=9e-99) hypothetical; (*ATH) AT5G67210.1 (e_value=3e-86) | Symbol: None | expressed protein, contains Pfam profile PF04669: Protein of unknown function (DUF579) | chr5:26836245-26837198 FORWARD | Aliases: K21H1.17, K21H1_17; Solyc01g107800.2.1 genomic_reference:SL2.40ch01 gene_region:86978546-86980025 transcript_region:SL2.40ch01:86978546..86980025- functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- B3VV16_POPTN); contains Interpro domain(s) IPR006514 Protein of unknown function DUF579, plant " 2 7 2 20 opLeV0100000202 sgn|U224142 AGAAATTCAAGGAATAATGTCGGGCATGGGAGATGGTTATGTGGGCACGGCCCAAGACGCCGTCAGAATC Experimental SGN-U575621 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157340524|emb|CAO47329.1| (e_value=1e-135) unnamed; (*ATH) AT2G21150.1 (e_value=7e-131) | Symbol: None | XAP5 family protein, contains Pfam profile: PF04921 XAP5 protein | chr2:9072420-9075171 FORWARD | Aliases: F26H11.9, F26H11_9; (*SWP) sp|Q2VPH1|F50AA_XENLA (e_value=1e-69) Protein FAM50A A OS=Xenopus laevis GN=fam50-A; Solyc01g111140.2.1 genomic_reference:SL2.40ch01 gene_region:89267732-89273059 transcript_region:SL2.40ch01:89267732..89273059+ go_terms:GO:0005634 functional_description:"Protein FAM50 homolog (AHRD V1 *--- FAM50_DROPS); contains Interpro domain(s) IPR007005 XAP5 protein " 2 5 2 20 opLeV0100000203 sgn|U226233 TTAGCCGATCTTGTGGTGTGGAAACCCTCATTTTTCGGAGCAAAACCAGAAATGGTGATCAAAGGAGGCG Experimental SGN-U585868 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|14599413|emb|CAC43857.1| (e_value=2e-65) urease [Solanum tuberosum]; (*ATH) AT1G67550.1 (e_value=4e-52) Symbol: None | urease, putative / urea amidohydrolase, putative, similar to SP:P07374 Urease (EC 3.5.1.5) (Urea amidohydrolase) {Canavalia ensiformis}; contains Pfam profile PF01979: Amidohydrolase family | chr1:25316403-25320828 FORWARD | Aliases: ... ; (*SWP) sp|P07374|UREA_CANEN (e_value=6e-51) Urease OS=Canavalia ensiformis; Solyc05g014970.2.1 genomic_reference:SL2.40ch05 gene_region:9174845-9187506 transcript_region:SL2.40ch05:9174845..9187506- go_terms:GO:0009039 functional_description:"Urease alpha subunit (AHRD V1 **** A3YCE1_9GAMM); contains Interpro domain(s) IPR008221 Urease IPR005848 Urease, alpha subunit " 2 3 2 20 opLeV0100000204 sgn|U229052 GCCAGAAAATGCCCAAGCTTCCTGAAAGTGAATCTGTTTGGTCTCTCGCAAATGTCCCATTGTCAACAGA Experimental SGN-U575776 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157356169|emb|CAO50082.1| (e_value=5e-58) unnamed; (*ATH) AT4G13750.1 (e_value=1e-38) | Symbol: None | expressed protein | chr4:7978944-7987554 FORWARD | Aliases: F18A5.140, F18A5_140; Solyc09g092100.2.1 genomic_reference:SL2.40ch09 gene_region:66589275-66608601 transcript_region:SL2.40ch09:66589275..66608601+ go_terms:GO:0005524 functional_description:"Predicted CDS Pa_5_8110 (Fragment) (AHRD V1 *--- B2AKK2_PODAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like " 2 1 2 20 opLeV0100000205 sgn|U215995 TTCCAAATTCACCGGTATTCTCGCCGGCGACTAGGATTCCGGTGACTAATTCTCTCTTATGTAAATCGGC Experimental SGN-U586055 Tomato 200607#2 [28 ESTs aligned] (*GB) gi|74474911|dbj|BAE44439.1| (e_value=3e-173) protein phosphatase 2C [Solanum tuberosum]; (*ATH) AT1G07160.1 (e_value=2e-100) | Symbol: None | protein phosphatase 2C, putative / PP2C, putative, similar to protein phosphatase 2C GI:2582800 from (Medicago sativa) | chr1:2197907-2199747 REVERSE | Aliases: F10K1.13, F10K1_13; (*SWP) sp|Q8BHN0|PPM1L_MOUSE (e_value=2e-32) Protein phosphatase 1L OS=Mus musculus GN=Ppm1l; Solyc06g007190.2.1 genomic_reference:SL2.40ch06 gene_region:1265654-1267702 transcript_region:SL2.40ch06:1265654..1267702+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_MOUSE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C " 2 7 6 20 opLeV0100000206 sgn|U218840 CTTTGTCCCGTGGAGATGGAGCAATATATCTGCGGTTTCCTCATAAAGGCTACCGCGAGAAGATATGGGA Experimental SGN-U566298 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|145359623|ref|NP_201203.2| (e_value=4e-135) SAL1; (*ATH) AT5G63980.1 (e_value=3e-137) Symbol: None | 3'(2'),5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase / FIERY1 protein (FRY1) (SAL1), identical to SP:Q42546 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) (3'(2'),5- bisphosphonucleoside 3'(2')-phosphohydrolase... ; (*SWP) sp|Q42546|DPNP1_ARATH (e_value=5e-135) SAL1 phosphatase OS=Arabidopsis thaliana GN=SAL1; Solyc05g056490.2.1 genomic_reference:SL2.40ch05 gene_region:64907109-64913076 transcript_region:SL2.40ch05:64907109..64913076- go_terms:GO:0008441 functional_description:"3&apos(2&apos) 5&apos-bisphosphate nucleotidase (AHRD V1 **** Q0WTT5_ARATH); contains Interpro domain(s) IPR006239 3(2),5 -bisphosphate nucleotidase HAL2 " 2 5 6 20 opLeV0100000207 sgn|U222658 AGCAGGAGCAAGATCAACTTAACTGTCAATTGAGACAACTAGAGATAGCAAGCATGAATAGGAACATGGG Experimental SGN-U569398 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|42795382|gb|AAS46018.1| (e_value=7e-98) MADS-box protein GLO1 [Petunia x hybrida]; (*ATH) AT5G20240.1 (e_value=4e-52) | Symbol: None | floral homeotic protein PISTILLATA (PI), contains Pfam profiles PF01486: K-box region and PF00319: SRF-type transcription factor (DNA-binding and dimerisation domain) | chr5:6829123-6831456 FORWARD | Aliases: F5O24.130, F5O24_130; (*SWP) sp|Q03488|FBP1_PETHY (e_value=2e-97) Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1; Solyc08g067230.2.1 genomic_reference:SL2.40ch08 gene_region:53468785-53473402 transcript_region:SL2.40ch08:53468785..53473402+ go_terms:GO:0003677 functional_description:"MADS box transcription factor (AHRD V1 ***- A7LK41_POPDE); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box " 2 3 6 20 opLeV0100000208 sgn|U229859 GGAGCTGGTGCAAGTGGAGATGAAGATGGCTATAAGTTGTGGCAGAGCTTGGTGCGCCAGACTGAATTGA Experimental SGN-U570796 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|58618123|gb|AAW80628.1| (e_value=0) phosphoinositide 3-kinase [Nicotiana tabacum]; (*ATH) AT1G60490.1 (e_value=0) | Symbol: None | phosphatidylinositol 3-kinase (PI3K), identical to SP:P42339 Phosphatidylinositol 3-kinase (EC 2.7.1.137) (PI3-kinase) (PtdIns-3- kinase) (PI3K) {Arabidopsis thaliana} | chr1:22289249-22293966 REVERSE | Aliases: F8A5.4, F8A5_4; (*SWP) sp|P42347|PI3K1_SOYBN (e_value=0) Phosphatidylinositol 3-kinase, root isoform OS=Glycine max; Solyc04g015350.2.1 genomic_reference:SL2.40ch04 gene_region:5548786-5561202 transcript_region:SL2.40ch04:5548786..5561202+ go_terms:GO:0016303 functional_description:"Phosphatidylinositol 3-kinase (AHRD V1 **** Q8GUA6_MEDTR); contains Interpro domain(s) IPR008290 Phosphatidylinositol 3-kinase, Vps34 type " 2 1 6 20 opLeV0100000209 sgn|U231521 GCAACAGTTCAGGCTGTTGGTCATGAATGCGACTTGGCTATTCTGGTGGTAGAAAGTGAAGAATTCTGGG Experimental SGN-U565867 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157327607|emb|CAO15604.1| (e_value=1e-135) unnamed; (*ATH) AT5G36950.1 (e_value=3e-130) | Symbol: None | DegP protease, putative, contains similarity to DegP2 protease GI:13172275 from (Arabidopsis thaliana) | chr5:14612211-14615570 FORWARD | Aliases: MLF18.70, MLF18_70; (*SWP) sp|Q9FIV6|DGP10_ARATH (e_value=3e-129) Protease Do-like 10, mitochondrial OS=Arabidopsis thaliana GN=DEGP10; Solyc11g008850.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3033380-3040040 transcript_region:SL2.40ch11:3033380..3040040+ go_terms:GO:0008236 functional_description:"Serine protease (AHRD V1 **** D8UJN6_VOLCA); contains Interpro domain(s) IPR015724 Serine endopeptidase DegP2 " 2 7 10 20 opLeV0100000210 sgn|U232784 AGAAGAGGAGAATAACAACTCCAACGACAATAGCAACGGGTGCCCATTTCCGAATCAGAGCCTGACGGTT Experimental SGN-U594615 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157339905|emb|CAO45582.1| (e_value=9e-64) unnamed; (*ATH) AT1G11890.1 (e_value=5e-65) Symbol: None | vesicle transport protein SEC22, putative, identified as SEC22 by Raikhel, NV, et al. in Plant Physiol. 124: 1558-69 (2000); similar to vesicle trafficking protein gb:U91538 from Mus musculus; ESTs gb:F15494 and gb:F14097 come from th... ; (*SWP) sp|Q94AU2|SEC22_ARATH (e_value=4e-64) 25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22; Solyc12g049420.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46439513-46443233 transcript_region:SL2.40ch12:46439513..46443233- go_terms:GO:0005484 functional_description:"Protein transport protein Sec22 (AHRD V1 **-- B0CRV5_LACBS); contains Interpro domain(s) IPR010908 Longin " 2 3 10 20 opLeV0100000211 sgn|U212919 AAAATCCTTCCGCACAACCAAAGGTAAGCCTCCATTGCAGACCACCAGTAGCCTCCGCCATCATGGGTCG Experimental SGN-U580881 Tomato 200607#2 [78 ESTs aligned] (*GB) gi|82621170|gb|ABB86273.1| (e_value=2e-78) cytoplasmic; (*ATH) AT4G00100.1 (e_value=5e-75) Symbol: None | 40S ribosomal protein S13 (RPS13A), similar to ribosomal protein S13; PF00312 (View Sanger Pfam): ribosomal protein S15; identical to cDNA AtRPS13A mRNA for cytoplasmic ribosomal protein S13 GI:6521011 | chr4:37096-38312 FORWARD | Ali... ; (*SWP) sp|P62302|RS13_SOYBN (e_value=1e-76) 40S ribosomal protein S13 OS=Glycine max GN=RPS13; \N \N 2 1 10 20 opLeV0100000212 sgn|U223163 TCATAAACCGAGATGAGGATCTCTGCACCAATCAGTATAATAATAAGCCATTCGAGGAAATCTGACTTCC Experimental SGN-U562971 Tomato 200607#2 [33 ESTs aligned] (*GB) gi|157344083|emb|CAO69016.1| (e_value=1e-137) unnamed; (*ATH) AT5G13610.1 (e_value=3e-112) | Symbol: None | expressed protein | chr5:4383016-4385032 FORWARD | Aliases: T6I14.13; Solyc04g049850.2.1 genomic_reference:SL2.40ch04 gene_region:42827134-42836304 transcript_region:SL2.40ch04:42827134..42836304+ go_terms:GO:0005975 functional_description:"Uncharacterized conserved protein (AHRD V1 *--- Q2S8S5_HAHCH); contains Interpro domain(s) IPR003734 Protein of unknown function DUF155 " 4 7 2 20 opLeV0100000213 sgn|U239671 GGGTTCCCCATACCCCCCTTCCCCCCTGGCTTGAATACTTTCCCAAAAAGCTTCCCTTTAAAAAATTGTT Experimental \N \N \N \N 4 5 2 20 opLeV0100000214 sgn|U213747 ACTTTCAAGGGTCTCTGGCTGTAGGCAGATATGGCTCCTTTTGGCGATTTCAAAGGCGGATATGTACTGT Experimental SGN-U580161 Tomato 200607#2 [41 ESTs aligned] (*GB) gi|584865|sp|P37122|C76A2_SOLME (e_value=0) Cytochrome; (*ATH) AT3G52970.1 (e_value=1e-111) | Symbol: None | cytochrome P450 family protein, cytochrome P450 76A2, eggplant, PIR:S38534 | chr3:19652284-19654254 REVERSE | Aliases: F8J2.140; (*SWP) sp|P37122|C76A2_SOLME (e_value=0) Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2; Solyc10g083700.2.1 genomic_reference:SL2.40ch10 gene_region:62792950-62794747 transcript_region:SL2.40ch10:62792950..62794747- go_terms:GO:0019825 functional_description:"Cytochrome P450" 4 3 2 20 opLeV0100000215 sgn|U220108 CCTTATTGAGGGTTGAAAAATCATGTTTCTAGCGGCACCTCGCAAAAGTAAGCAAAAATCTCTTCAGGCC Experimental SGN-U564270 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|70663512|emb|CAJ15155.1| (e_value=8e-15) sialyltransferase-like protein [Solanum tuberosum]; (*ATH) AT1G08660.1 (e_value=2e-16) | Symbol: None | glycosyl transferase family 29 protein / sialyltransferase family protein, contains Pfam profile: PF00777 sialyltransferase (Glycosyltransferase family 29) | chr1:2757044-2759768 REVERSE | Aliases: F22O13.14, F22O13_14; \N \N 4 1 2 20 opLeV0100000216 sgn|U224300 TAGGCCGAGAGCCAACAAAATCTTCAATTTTAAGACAGGATTGTCTTCATCCCTGATGCTTTTATCCCCA Experimental SGN-U568306 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|90265074|emb|CAH67747.1| (e_value=1e-33) H0702G05.6; (*ATH) AT3G13050.1 (e_value=7e-32) Symbol: None | transporter-related, low similarity to apical organic cation transporter (Sus scrofa) GI:2062135, SP:Q02563 Synaptic vesicle protein 2 (SV2) {Rattus norvegicus}; contains Pfam profile PF00083: major facilitator superfamily protein | c... ; (*SWP) sp|Q1JP63|SVOP_BOVIN (e_value=3e-13) Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP; Solyc07g042900.2.1 genomic_reference:SL2.40ch07 gene_region:53752300-53758204 transcript_region:SL2.40ch07:53752300..53758204+ go_terms:GO:0015101 functional_description:"Major facilitator family transporter (AHRD V1 **-* C9KLG5_9FIRM); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter " 4 7 6 20 opLeV0100000217 sgn|U221898 GCCGAGGTGAAAGAGGAGAGCAGCTGTTAATGCCCGAGCATCACGTAAAACTGAAGCCTGTATATTTTCT Experimental SGN-U565919 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|42569523|ref|NP_180718.2| (e_value=1e-55) expressed protein [Arabidopsis thaliana]; (*ATH) AT2G31600.1 (e_value=7e-58) | Symbol: None | expressed protein | chr2:13455267-13457172 REVERSE | Aliases: T9H9.12, T9H9_12; Solyc01g008200.2.1 genomic_reference:SL2.40ch01 gene_region:2348478-2349556 transcript_region:SL2.40ch01:2348478..2349556+ functional_description:"Os05g0304100 protein (Fragment) (AHRD V1 ***- Q0DJB8_ORYSJ)" 4 5 6 20 opLeV0100000218 sgn|U213522 GGAAACTTCAGATCAGCTTATCGTTTCGAAGATTGGATCATGAGTTCATGAACTCACCAGCTCACTCTCC Experimental SGN-U583843 Tomato 200607#2 [40 ESTs aligned] (*GB) gi|9719041|gb|AAF97614.1|U18056_1 (e_value=0) 1-amino-cyclopropane-1-carboxylate; (*ATH) AT4G11280.1 (e_value=0) | Symbol: None | 1-aminocyclopropane-1-carboxylate synthase 6 / ACC synthase 6 (ACS6), identical to GI:3746125 | chr4:6864093-6866112 FORWARD | Aliases: F8L21.70, F8L21_70; (*SWP) sp|P31531|1A1C_SOYBN (e_value=0) 1-aminocyclopropane-1-carboxylate synthase OS=Glycine max GN=ACS1; Solyc08g081550.2.1 genomic_reference:SL2.40ch08 gene_region:61737928-61740577 transcript_region:SL2.40ch08:61737928..61740577- go_terms:GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q96579_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II " 4 3 6 20 opLeV0100000219 sgn|U215938 TGTTGGCCAGCTCATCAAGATGGCTACGGAAAAAGGTCGGGCTGCAAGGCCAAACTTGAAGGTTGGAATT Experimental SGN-U590404 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157336376|emb|CAO71061.1| (e_value=7e-25) unnamed; (*ATH) AT4G15530.2 (e_value=5e-26) Symbol: None | similar to pyruvate,orthophosphate dikinase [Flaveria brownii] (GB:CAA55784.1); similar to pyruvate,orthophosphate dikinase [Mesembryanthemum crystallinum] (GB:CAA55143.1); similar to cold stable pyruvate, orthophosphate dikinase (GB:... ; (*SWP) sp|Q42910|PPDK_MESCR (e_value=1e-25) Pyruvate, phosphate dikinase, chloroplastic OS=Mesembryanthemum crystallinum GN=PPD; Solyc01g080460.2.1 genomic_reference:SL2.40ch01 gene_region:72206073-72214485 transcript_region:SL2.40ch01:72206073..72214485+ go_terms:GO:0050242,GO:0016310,GO:0005524,GO:0003824 functional_description:"Pyruvate phosphate dikinase (AHRD V1 ***- Q84N32_SORBI); contains Interpro domain(s) IPR010121 Pyruvate, phosphate dikinase " 4 1 6 20 opLeV0100000220 sgn|U217159 GGTGGCCCAACAGGGCCTCCTGCTACAAGTTTTGTTAGGGCCGAAATGCTACCAAGTGGTTACCTCATAA Experimental SGN-U575605 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|45479746|gb|AAS66760.1| (e_value=0) PHAVOLUTA-like HD-ZIPIII protein [Nicotiana sylvestris]; (*ATH) AT2G34710.1 (e_value=0) | Symbol: None | homeobox-leucine zipper transcription factor (HB-14), identical to homeodomain transcription factor (ATHB-14)GP:3132474 GB:Y11122 (Arabidopsis thaliana); | chr2:14646402-14651348 REVERSE | Aliases: T29F13.8, T29F13_8; (*SWP) sp|O04291|ATB14_ARATH (e_value=0) Homeobox-leucine zipper protein ATHB-14 OS=Arabidopsis thaliana GN=ATHB-14; Solyc02g024070.2.1 genomic_reference:SL2.40ch02 gene_region:15627267-15633567 transcript_region:SL2.40ch02:15627267..15633567+ go_terms:GO:0005515,GO:0003677 functional_description:"Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA " 4 7 10 20 opLeV0100000221 sgn|U216863 GCCTCCATCCTCTGCTCTGGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCG Experimental SGN-U565635 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|157345511|emb|CAO14809.1| (e_value=2e-115) unnamed; (*ATH) AT3G28050.1 (e_value=3e-111) | Symbol: None | nodulin MtN21 family protein, similar to MtN21 (Medicago truncatula) GI:2598575; contains Pfam profile PF00892: Integral membrane protein | chr3:10444054-10446622 FORWARD | Aliases: MMG15.22; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=1e-38) Auxin-induced protein 5NG4 OS=Pinus taeda; Solyc02g087060.2.1 genomic_reference:SL2.40ch02 gene_region:44168265-44171706 transcript_region:SL2.40ch02:44168265..44171706+ functional_description:"Nodulin MtN21 family protein (AHRD V1 ***- D7LPP0_ARALY)" 4 5 10 20 opLeV0100000222 sgn|U225843 AGAATATCAGTTGCAAGCTTCTTCACTACTGGTCCATTTCCATCTCCGAAGCTCTATGGACCAATTGCTG Experimental \N \N Solyc09g089730.2.1 genomic_reference:SL2.40ch09 gene_region:64800904-64802585 transcript_region:SL2.40ch09:64800904..64802585+ go_terms:GO:0016491 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-- Q9LTH7_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase " 4 3 10 20 opLeV0100000223 sgn|U238038 AAATCACGATAGGATTCTTACCCTGTAGAAGTGCTGTTGCAACGTTGAACAGGGGAAGTACCATCACAAG Experimental SGN-U602828 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157337967|emb|CAO39011.1| (e_value=1e-75) unnamed; (*ATH) AT5G54780.1 (e_value=4e-74) Symbol: None | similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:At4g27100.1); similar to putative GTPase activating protein [Oryza sativa (japonica cultivar-group)] (GB:XP_468334.1); contains InterPro domain RabGAP/TBC do... ; \N \N 4 1 10 20 opLeV0100000224 sgn|U242331 AAGAGATGAGGAAATGTCGTCCCAAAGTAAGCTCCATCAATATTGCCTTGGTACTTCGATCGAGGGTAAT Experimental SGN-U592162 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|45238341|emb|CAD27343.1| (e_value=9e-43) protein kinase 2 beta chain [Nicotiana tabacum]; (*ATH) AT5G47080.1 (e_value=4e-41) | Symbol: None | casein kinase II beta chain, putative, similar to casein kinase II beta chain (CK II) (Arabidopsis thaliana) SWISS-PROT:P40228 | chr5:19141839-19143775 REVERSE | Aliases: K14A3.3, K14A3_3; (*SWP) sp|P40228|CSK2B_ARATH (e_value=3e-40) Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1; Solyc05g050680.2.1 genomic_reference:SL2.40ch05 gene_region:59944294-59953427 transcript_region:SL2.40ch05:59944294..59953427- go_terms:GO:0019887 functional_description:"Casein kinase II subunit beta-4 (AHRD V1 **** B6TGH2_MAIZE); contains Interpro domain(s) IPR000704 Casein kinase II, regulatory subunit " 2 7 3 20 opLeV0100000225 sgn|U213465 TACCTGTTTGGAAGTGGAGAGCCTGCTAACAATTCTCAGACTGCTCGCAACCAGGAAAAGGCTCCGACTA Experimental SGN-U569750 Tomato 200607#2 [113 ESTs aligned] (*GB) gi|157341270|emb|CAO49177.1| (e_value=2e-38) unnamed; (*ATH) AT1G69230.1 (e_value=2e-31) | Symbol: None | expressed protein | chr1:26030016-26031371 REVERSE | Aliases: F4N2.18; \N \N 2 5 3 20 opLeV0100000226 sgn|U216997 CTGAAAGGGAACTAGAAATCAAGCTTAGCCTGCAGGAGCCCGGGGTAAACAGTAATGTGGATTATGAAGC Experimental SGN-U575683 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|147856346|emb|CAN81781.1| (e_value=1e-113) hypothetical; (*ATH) AT5G64440.1 (e_value=2e-100) | Symbol: None | amidase family protein, low similarity to enantiomerase-selective amidase (Rhodococcus sp.) GI:152052; contains Pfam profile PF01425: Amidase | chr5:25782985-25787673 FORWARD | Aliases: T12B11.3, T12B11_3; (*SWP) sp|Q9A5L0|GATA_CAUCR (e_value=6e-16) Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Caulobacter crescentus GN=gatA; Solyc01g106360.2.1 genomic_reference:SL2.40ch01 gene_region:86051299-86059178 transcript_region:SL2.40ch01:86051299..86059178+ go_terms:GO:0016884 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- C5FFK2_NANOT); contains Interpro domain(s) IPR000120 Amidase signature enzyme " 2 3 3 20 opLeV0100000227 sgn|U222426 GTAGAGAATAAGAAAGGAAGACAAGCACCTCTCCTAAAGCCCCCTTCCCCCTCCAACTTTCCTTTTCTTT Experimental SGN-U576774 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|27447655|gb|AAO13688.1|AF013279_1 (e_value=0) amino; (*ATH) AT5G49630.1 (e_value=0) | Symbol: None | amino acid permease 6 (AAP6), identical to amino acid permease 6 (AAP6) (Arabidopsis thaliana) GI:1769887 | chr5:20159696-20163712 REVERSE | Aliases: MNI5.1, MNI5_1; Solyc01g106800.2.1 genomic_reference:SL2.40ch01 gene_region:86319498-86323512 transcript_region:SL2.40ch01:86319498..86323512- go_terms:GO:0015175,GO:0015172 functional_description:"Amino acid permease 6 (AHRD V1 **** Q7Y076_BRANA); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane " 2 1 3 20 opLeV0100000228 sgn|U233004 GCGAGCCTCTGATTTAAACAACGCTCACCTCGAGTGTGATGCTGATGTGG Experimental SGN-U592792 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|1351271|sp|P48496|TPIC_SPIOL (e_value=1e-26) Triosephosphate isomerase, chloroplast precursor (TIM); (*ATH) AT2G21170.1 (e_value=3e-22) Symbol: None | triosephosphate isomerase, chloroplast, putative, similar to Triosephosphate isomerase, chloroplast precursor: SP:P48496 from Spinacia oleracea, SP:P46225 from Secale cereale | chr2:9077835-9080304 REVERSE | Aliases: F26H11.7, F26H11_... ; (*SWP) sp|P48496|TPIC_SPIOL (e_value=5e-28) Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1; \N \N 2 7 7 20 opLeV0100000229 sgn|U212910 ACTAACTCCTGGAGTTATATCGACCACCTTTCCACTCGAACTTAAATTAGGCTCAAAGGTAGACCAAGGG Experimental SGN-U581242 Tomato 200607#2 [163 ESTs aligned] (*GB) gi|77416923|gb|ABA81857.1| (e_value=1e-169) ripening regulated protein-like [Solanum tuberosum]; (*ATH) AT4G13010.1 (e_value=3e-149) Symbol: None | oxidoreductase, zinc-binding dehydrogenase family protein, low similarity to probable NADP-dependent oxidoreductase (zeta-crystallin homolog) P1 (SP:Q39172)(gi:886428) and P2 (SP:Q39173)(gi:886430); contains Pfam profile PF00107: oxid... ; (*SWP) sp|Q9SV68|QORH_ARATH (e_value=3e-148) Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010; Solyc09g059030.2.1 genomic_reference:SL2.40ch09 gene_region:48608361-48611952 transcript_region:SL2.40ch09:48608361..48611952- go_terms:GO:0004024 functional_description:"Alcohol dehydrogenase zinc-containing (AHRD V1 **-* Q637W0_BACCZ); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing " 2 5 7 20 opLeV0100000230 sgn|U213952 GCTTGTCGGACAATCCAAGGGCATGTGATGCACTAAGAAATGGTCTCCCTGATATGCTTAGAGACAACAC Experimental SGN-U571076 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157337870|emb|CAO38914.1| (e_value=3e-83) unnamed; (*ATH) AT3G20800.1 (e_value=3e-81) Symbol: None | rcd1-like cell differentiation protein, putative, similar to protein involved in sexual development (Schizosaccharomyces pombe) GI:1620896; contains Pfam profile PF04078: Cell differentiation family, Rcd1-like | chr3:7271143-7273950 R... ; (*SWP) sp|Q9JKY0|RCD1_MOUSE (e_value=3e-63) Cell differentiation protein RCD1 homolog OS=Mus musculus GN=Rqcd1; Solyc12g014400.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5301680-5310483 transcript_region:SL2.40ch12:5301680..5310483+ functional_description:"Cell differentiation protein rcd1 (AHRD V1 ***- B6TRX0_MAIZE); contains Interpro domain(s) IPR007216 Cell differentiation, Rcd1-like " 2 3 7 20 opLeV0100000231 sgn|U216813 TGGGATGACTCCCAAAACTTTAAGACTGCCTAAACCTGGGGAAATGCTTCTATCTGTCCACGGCTCTCCT Experimental SGN-U569908 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157345057|emb|CAO71785.1| (e_value=1e-68) unnamed; (*ATH) AT4G39630.1 (e_value=1e-47) | Symbol: None | expressed protein | chr4:18397589-18399381 REVERSE | Aliases: F23K16.7; Solyc03g019910.2.1 genomic_reference:SL2.40ch03 gene_region:6801923-6805520 transcript_region:SL2.40ch03:6801923..6805520+ functional_description:"Unknown Protein (AHRD V1)" 2 1 7 20 opLeV0100000232 sgn|U218432 ATGCAAAAGCCACTGACACTGGTATTGATCCAAAAGAGGCTGCTAAGCGGCTCAAGATTGACTGGGATTC Experimental SGN-U572108 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|157352660|emb|CAO44475.1| (e_value=2e-46) unnamed; (*ATH) AT5G44650.1 (e_value=3e-45) | Symbol: None | expressed protein | chr5:18030376-18032630 FORWARD | Aliases: K15C23.10, K15C23_10; Solyc10g005180.2.1 genomic_reference:SL2.40ch10 gene_region:140704-145668 transcript_region:SL2.40ch10:140704..145668+ functional_description:"Genomic DNA chromosome 5 TAC clone K15C23 (AHRD V1 **-- Q9LU01_ARATH)" 2 7 11 20 opLeV0100000233 sgn|U220223 CGATCCTTGTGCGCTTTTTTAACTTGAGGCGAGGCGATTTGAAAAAAGCACTCGCTTCAGAGGAAGAAGC Experimental SGN-U570492 Tomato 200607#2 [4 ESTs aligned] \N \N 2 5 11 20 opLeV0100000234 sgn|U215592 AGCAGGTCGTGACACAACATCAGCTGCATTAACTTGGTTCTTCTGGTTAATCTCGGAACACCCTGTGGTG Experimental SGN-U573731 Tomato 200607#2 [53 ESTs aligned] (*GB) gi|18000070|gb|AAL54886.1|AF092915_1 (e_value=0) cytochrome; (*ATH) AT5G63450.1 (e_value=1e-123) | Symbol: None | cytochrome P450, putative | chr5:25426121-25427799 REVERSE | Aliases: MLE2.8, MLE2_8; (*SWP) sp|O81117|C94A1_VICSA (e_value=3e-178) Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1; Solyc09g066150.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:60174324-60175832 transcript_region:SL2.40ch09:60174324..60175832+ go_terms:GO:0019825 functional_description:"Cytochrome P450" 2 3 11 20 opLeV0100000235 sgn|U215615 TCGTCGACATAGATGTCATGTAGCTTCTCCACAAGAATATGTTGAGCCTTATCCTGAGAGCTTATGCAAA Experimental SGN-U568590 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|148908754|gb|ABR17484.1| (e_value=2e-17) unknown; Solyc10g052600.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:48429755-48430948 transcript_region:SL2.40ch10:48429755..48430948- go_terms:GO:0008152 functional_description:"Os10g0578600 protein (Fragment) (AHRD V1 ***- Q0IVC7_ORYSJ); contains Interpro domain(s) IPR013216 Methyltransferase type 11 " 2 1 11 20 opLeV0100000236 sgn|U216105 TGTTTTAATACCGAGAAGCATTGCTCGGCCAGCTGGTTATATGTGTGAAGTTGACACTGAAGGGGAGAGC Experimental SGN-U575049 Tomato 200607#2 [26 ESTs aligned] (*GB) gi|188509954|gb|ACD56638.1| (e_value=0) trehalose; (*ATH) AT1G06410.1 (e_value=0) | Symbol: None | glycosyl transferase family 20 protein / trehalose-phosphatase family protein, contains Pfam profile: PF02358 trehalose-phosphatase | chr1:1955412-1958755 FORWARD | Aliases: T2D23.11, T2D23_11; (*SWP) sp|Q9LMI0|TPS7_ARATH (e_value=0) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 OS=Arabidopsis thaliana GN=TPS7; Solyc02g072150.2.1 genomic_reference:SL2.40ch02 gene_region:36009721-36013800 transcript_region:SL2.40ch02:36009721..36013800- go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** A3CXN9_METMJ); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 " 4 5 3 20 opLeV0100000237 sgn|U223551 TCAAGTTCGCCAATAGCTCGCTGCTCCTGTTAACAGCGTCCGTCATTCCTGGAGGAGCATTTGGTAGAGC Experimental SGN-U592487 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157360002|emb|CAO68746.1| (e_value=2e-31) unnamed; (*ATH) AT5G47860.1 (e_value=4e-28) | Symbol: None | expressed protein | chr5:19398789-19401648 FORWARD | Aliases: MCA23.20, MCA23_20; Solyc01g008070.2.1 genomic_reference:SL2.40ch01 gene_region:2211926-2218945 transcript_region:SL2.40ch01:2211926..2218945+ functional_description:"Alpha/beta superfamily hydrolase (AHRD V1 *--- D0CIF5_9SYNE); contains Interpro domain(s) IPR010765 Protein of unknown function DUF1350 " 4 3 3 20 opLeV0100000238 sgn|U239476 CCTCCACAATTACGAAAGATAGGGAAGCACATCATACAACAATGTCAAGGATTGCCTCTCTCGATTATTG Experimental SGN-U562712 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|190607691|gb|ACE79504.1| (e_value=3e-64) NBS-coding; (*ATH) AT3G46530.1 (e_value=3e-42) | Symbol: None | disease resistance protein, RPP13-like (CC-NBS class), putative, domain signature CC-NBS exists, suggestive of a disease resistance protein. Closest homolog in Col-0 to RPP13. | chr3:17141352-17144323 REVERSE | Aliases: F12A12.50; (*SWP) sp|Q60CZ8|R1A10_SOLDE (e_value=2e-42) Putative late blight resistance protein homolog R1A-10 OS=Solanum demissum GN=R1A-10; Solyc05g008070.2.1 genomic_reference:SL2.40ch05 gene_region:2500501-2503179 transcript_region:SL2.40ch05:2500501..2503179+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein" 4 1 3 20 opLeV0100000239 sgn|U214600 TATAGCTAAGCGCAAACATGCTAACCAAGAGGTGTTGTATCTTTCTGCCAAGATCCCCCGAGGAATCCCT Experimental SGN-U563755 Tomato 200607#2 [50 ESTs aligned] (*GB) gi|157358298|emb|CAO65935.1| (e_value=0) unnamed; (*ATH) AT4G11380.1 (e_value=0) Symbol: None | beta-adaptin, putative, strong similarity to SP:Q10567 Adapter-related protein complex 1 beta 1 subunit (Beta-adaptin 1) (Homo sapiens), beta-adaptin (Drosophila melanogaster) GI:434902; contains Pfam profile: PF01602 Adaptin N termin... ; (*SWP) sp|O35643|AP1B1_MOUSE (e_value=0) AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1; Solyc08g081320.2.1 genomic_reference:SL2.40ch08 gene_region:61549434-61558071 transcript_region:SL2.40ch08:61549434..61558071- go_terms:GO:0030276 functional_description:"AP-1 complex subunit beta-1 (AHRD V1 ***- C5GH51_AJEDR); contains Interpro domain(s) IPR016342 Adaptor protein complex, beta subunit " 4 7 7 20 opLeV0100000240 sgn|U220854 CCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTA Experimental SGN-U575903 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157342203|emb|CAO64316.1| (e_value=7e-18) unnamed; (*ATH) AT5G62930.1 (e_value=2e-18) Symbol: None | GDSL-motif lipase/hydrolase family protein, similar to SP:P41734 Isoamyl acetate-hydrolyzing esterase (EC 3.1.-.-) {Saccharomyces cerevisiae}; contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif | chr5:25272114-25... ; \N \N 4 5 7 20 opLeV0100000241 sgn|U213699 CCTTCCTCCCGTCAGTCCCCACACCATTGTCTTTCCAGGAGATAATCCACAGGCAGTGAAGACAAGGTTG Experimental SGN-U563827 Tomato 200607#2 [83 ESTs aligned] (*GB) gi|157345119|emb|CAO71847.1| (e_value=2e-43) unnamed; (*ATH) AT4G33985.1 (e_value=5e-31) | Symbol: None | expressed protein | chr4:16288117-16288918 REVERSE | Aliases: None; Solyc02g090840.2.1 genomic_reference:SL2.40ch02 gene_region:46891264-46892524 transcript_region:SL2.40ch02:46891264..46892524- functional_description:"Os11g0282300 protein (Fragment) (AHRD V1 ***- Q0ITA9_ORYSJ); contains Interpro domain(s) IPR012881 Protein of unknown function DUF1685 " 4 3 7 20 opLeV0100000242 sgn|U222613 GAAGTATCTTTGGATGCCTAGGTTAGCCGAAAGAATACAAGCCGCCGCGGCTACTTCCAACCCAACGGCG Experimental SGN-U565756 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|147773545|emb|CAN63179.1| (e_value=1e-79) hypothetical; (*ATH) AT5G49620.1 (e_value=4e-74) Symbol: None | myb family transcription factor (MYB78), contains PFAM profile: myb DNA binding domain PF00249; identical to cDNA putative transcription factor (MYB78) mRNA, partial cds GI:3941509 | chr5:20154620-20156610 REVERSE | Aliases: K6M13.18,... ; (*SWP) sp|P81391|MYB05_ANTMA (e_value=1e-50) Myb-related protein 305 OS=Antirrhinum majus GN=MYB305; Solyc05g053330.2.1 genomic_reference:SL2.40ch05 gene_region:62594925-62596759 transcript_region:SL2.40ch05:62594925..62596759+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 ***- Q39550_CRAPL); contains Interpro domain(s) IPR015495 Myb transcription factor " 4 1 7 20 opLeV0100000243 sgn|U213294 TACTGCCACCCAGGTCCAAGGTCCATACCTGCCTATTACTAGGGAGCAGCCTGCTGTTGACTTTGTGAAG Experimental SGN-U581109 Tomato 200607#2 [125 ESTs aligned] (*GB) gi|76573319|gb|ABA46764.1| (e_value=1e-96) unknown [Solanum tuberosum]; (*ATH) AT3G49010.1 (e_value=5e-86) | Symbol: None | 60S ribosomal protein L13 (RPL13B) / breast basic conserved protein 1-related (BBC1) | chr3:18177772-18179565 REVERSE | Aliases: T2J13.150; (*SWP) sp|P41127|RL131_ARATH (e_value=4e-85) 60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B; Solyc08g075700.2.1 genomic_reference:SL2.40ch08 gene_region:56989912-56992165 transcript_region:SL2.40ch08:56989912..56992165- go_terms:GO:0003735 functional_description:"60S ribosomal protein L13 (AHRD V1 ***- Q3HRY7_SOLTU); contains Interpro domain(s) IPR001380 Ribosomal protein L13e " 4 7 11 20 opLeV0100000244 sgn|U213473 GGGATGAAGCTCGCCATGCTGGGTTTTTGAACAAGGGTTTATCTGACTTCAATTTGGCGTTGGACTTGGG Experimental SGN-U574472 Tomato 200607#2 [157 ESTs aligned] (*GB) gi|147844779|emb|CAN79041.1| (e_value=0) hypothetical; (*ATH) AT3G56940.1 (e_value=0) | Symbol: None | dicarboxylate diiron protein, putative (Crd1), similar to leucine-containing zipper protein At103 GP:6911864; contains Pfam profile PF05447: Copper response defect 1 (CRD1) | chr3:21087524-21089571 FORWARD | Aliases: T8M16.1; (*SWP) sp|Q9M591|CRD1_ARATH (e_value=0) Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Arabidopsis thaliana GN=CRD1; Solyc10g077040.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59277929-59280410 transcript_region:SL2.40ch10:59277929..59280410- go_terms:GO:0003677,GO:0048529 functional_description:"Magnesium-protoporphyrin IX monomethyl ester (AHRD V1 **** B9SCF8_RICCO); contains Interpro domain(s) IPR008434 Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase " 4 5 11 20 opLeV0100000245 sgn|U227704 GCCTTGAACTGAAACTCTTGTGGAGTTCCAGGCAAACTCTTGAGTGCACCCAATATGTTAGACTGTGACC Experimental SGN-U565077 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157359769|emb|CAO68491.1| (e_value=3e-87) unnamed; (*ATH) AT3G55550.1 (e_value=2e-45) Symbol: None | lectin protein kinase, putative, similar to receptor lectin kinase 3 (Arabidopsis thaliana) gi:4100060:gb:AAD00733; contains protein kinase domain, Pfam:PF00069; contains legume lectins alpha and beta domains, Pfam:PF00138 and Pfam:PF... ; (*SWP) sp|Q9M0X5|CRK25_ARATH (e_value=4e-28) Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25; Solyc02g068300.2.1 genomic_reference:SL2.40ch02 gene_region:32860048-32864698 transcript_region:SL2.40ch02:32860048..32864698+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM32_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 4 3 11 20 opLeV0100000246 sgn|U240225 GGTAATTGAAATGCGCCCCGAATCTTGCACCACGCTCAAGATTTTGATGTCTATACGATCCATGAAGGTT Experimental SGN-U600151 Tomato 200607#2 [1 ESTs aligned] \N \N 4 1 11 20 opLeV0100000247 sgn|U219438 TAGAGTTTTAGGACGGCTTGTTCCTGGTTGCCGGAAACAACCGCTGCCGGTGATTCTAGATGAAGCTACT Experimental SGN-U579452 Tomato 200607#2 [33 ESTs aligned] (*GB) gi|157353042|emb|CAO44932.1| (e_value=4e-43) unnamed; (*ATH) AT3G17100.2 (e_value=2e-37) | Symbol: None | expressed protein | chr3:5831279-5832425 FORWARD | Aliases: None; Solyc01g058670.2.1 genomic_reference:SL2.40ch01 gene_region:60363932-60365436 transcript_region:SL2.40ch01:60363932..60365436- go_terms:GO:0003713,GO:0005504 functional_description:"Transcription factor (AHRD V1 *-** D7L4N5_ARALY)" 2 7 4 20 opLeV0100000248 sgn|U215659 CGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAAT Experimental SGN-U564931 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|147774898|emb|CAN77211.1| (e_value=3e-75) hypothetical; (*ATH) AT1G78780.2 (e_value=5e-56) | Symbol: None | pathogenesis-related family protein, contains similarity to pathogen-related protein (GI:499073) (Swiss-Prot:P16273) (Hordeum vulgare) | chr1:29626237-29627338 REVERSE | Aliases: None; (*SWP) sp|P16273|PRPX_HORVU (e_value=3e-63) Pathogen-related protein OS=Hordeum vulgare; Solyc04g064870.2.1 genomic_reference:SL2.40ch04 gene_region:55151560-55153322 transcript_region:SL2.40ch04:55151560..55153322+ functional_description:"Pathogenesis-related protein-like protein (AHRD V1 ***- Q8L9B0_ARATH)" 2 5 4 20 opLeV0100000249 sgn|U219399 CAAGCCTTTGCAGTTTCTAGTTCCAATGATTATGGTGGTCTATTCCCAGAGTTGTACCAATTCTCATGTC Experimental SGN-U578159 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|14031051|gb|AAK52085.1| (e_value=3e-154) peroxidase [Nicotiana tabacum]; (*ATH) AT1G44970.1 (e_value=3e-137) | Symbol: None | peroxidase, putative, similar to peroxidase GI:993004 from (Mercurialis annua) | chr1:17004652-17006124 FORWARD | Aliases: F27F5.6, F27F5_6; (*SWP) sp|Q96512|PER9_ARATH (e_value=3e-136) Peroxidase 9 OS=Arabidopsis thaliana GN=PER9; Solyc04g080760.2.1 genomic_reference:SL2.40ch04 gene_region:62450375-62452609 transcript_region:SL2.40ch04:62450375..62452609- go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- Q94IQ0_TOBAC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial " 2 3 4 20 opLeV0100000250 sgn|U223260 ATTTGAGTGGCACCGACATCGTTGCCACCACCACAGCTAAACAAGAACTTCTTGAGTCAGACAATGACCA Experimental SGN-U581815 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157331375|emb|CAO64650.1| (e_value=6e-25) unnamed; (*ATH) AT4G14750.1 (e_value=4e-21) | Symbol: None | calmodulin-binding family protein, contains Pfam profile PF00612: IQ calmodulin-binding motif | chr4:8470376-8472182 FORWARD | Aliases: DL3415W, FCAALL.303; Solyc09g082560.2.1 genomic_reference:SL2.40ch09 gene_region:63677616-63679791 transcript_region:SL2.40ch09:63677616..63679791- go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6SW62_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region " 2 1 4 20 opLeV0100000251 sgn|U226212 TTACCTTTTCGCAGGTCTTGGATTTATGGCTATAGGTTCAGGAGGTATTCGAGCCTGCAACATCGCATTT Experimental SGN-U577104 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|145358511|ref|NP_198199.2| (e_value=5e-61) transporter; (*ATH) AT5G28470.1 (e_value=3e-63) | Symbol: None | proton-dependent oligopeptide transport (POT) family protein, contains Pfam profile: PF00854 POT family | chr5:10429817-10432361 FORWARD | Aliases: F24J2.10, F24J2_10; (*SWP) sp|Q9FNL7|PTR3A_ARATH (e_value=6e-21) Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A; Solyc03g113440.2.1 genomic_reference:SL2.40ch03 gene_region:57639921-57642323 transcript_region:SL2.40ch03:57639921..57642323- go_terms:GO:0080054,GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region " 2 7 8 20 opLeV0100000252 sgn|U214103 CCACCTGAGCTGGGTTCCTTACAGTATCTTCGACACCTGGATGTTGGTAACAATCGTTTGGTTGGAACTA Experimental SGN-U576711 Tomato 200607#2 [54 ESTs aligned] (*GB) gi|157338528|emb|CAO41879.1| (e_value=2e-144) unnamed; (*ATH) AT5G61240.1 (e_value=7e-141) Symbol: None | similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:At1g13910.1); similar to Hcr2-0B [Lycopersicon esculentum] (GB:AAC78593.1); similar to putative leucine-rich repeat resistance protein [Solanum demissum] (GB:A... ; (*SWP) sp|Q9LYN8|EXS_ARATH (e_value=4e-28) Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS; Solyc01g011040.2.1 genomic_reference:SL2.40ch01 gene_region:7002577-7009509 transcript_region:SL2.40ch01:7002577..7009509- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP" 2 5 8 20 opLeV0100000253 sgn|U233251 CCCCTACAGAGGTAAGGAAAATCCCACCCCCGGTAGAAACAATAAGCAAACCCAGCGCCCCCCTTTCAAA Experimental SGN-U591473 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157355398|emb|CAO48788.1| (e_value=2e-26) unnamed; (*ATH) AT2G38360.1 (e_value=2e-25) Symbol: None | prenylated rab acceptor (PRA1) family protein, weak similarity to prenylated Rab acceptor 1 (PRA1) (Homo sapiens) GI:4877285; contains Pfam profile PF03208: Prenylated rab acceptor (PRA1) | chr2:16076693-16077667 REVERSE | Aliases: T1... ; \N \N 2 3 8 20 opLeV0100000254 sgn|U240910 TTTGTTTCAGGGTTTCCCCGGCGCCCAAACCCAGGGGTTTGGCCGGCTCATAAAAAACCATTTTGGGGGG Experimental SGN-U602701 Tomato 200607#2 [1 ESTs aligned] \N \N 2 7 12 20 opLeV0100000255 sgn|U220380 CAGCCTTATCAGCAACGCGTCCAACAATTACTGCACCGGAAGGTATTTCAAGAGAGCGCGGCTTTGCAGT Experimental SGN-U582324 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|157343307|emb|CAO67358.1| (e_value=3e-39) unnamed; (*ATH) AT2G21530.1 (e_value=2e-38) | Symbol: None | forkhead-associated domain-containing protein / FHA domain-containing protein | chr2:9226404-9227666 FORWARD | Aliases: F3K23.29, F3K23_29; Solyc01g009080.2.1 genomic_reference:SL2.40ch01 gene_region:3091052-3093978 transcript_region:SL2.40ch01:3091052..3093978+ functional_description:"FHA domain containing protein (AHRD V1 ***- B6TP39_MAIZE); contains Interpro domain(s) IPR000253 Forkhead-associated " 2 5 12 20 opLeV0100000256 sgn|U231815 GGTTTTTGGAGGATGGTTGTTATGTCTATCAGTTCTACAGGGTACCGCAATTCAATCACAACATGCAGGA Experimental SGN-U581725 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|30690453|ref|NP_182185.2| (e_value=1e-62) AAA-type ATPase family [Arabidopsis thaliana]; (*ATH) AT2G46620.1 (e_value=1e-64) | Symbol: None | AAA-type ATPase family protein, contains Pfam profile: ATPase family PF00004 | chr2:19145871-19147817 REVERSE | Aliases: F13A10.15; Solyc03g082640.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:46100818-46102242 transcript_region:SL2.40ch03:46100818..46102242+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core " 2 3 12 20 opLeV0100000257 sgn|U217317 ACTGGAAAGGAAGGCAACCTCCGAGCGTTGCTGTCGTCACTACAACATGTATTGTGGCCTGAATGCGGTT Experimental SGN-U576934 Tomato 200607#2 [31 ESTs aligned] (*GB) gi|157344960|emb|CAO71688.1| (e_value=2e-69) unnamed; (*ATH) AT4G12770.1 (e_value=4e-68) | Symbol: None | auxilin-related, low similarity to SP:Q27974 Auxilin {Bos taurus} | chr4:7506378-7511563 REVERSE | Aliases: T20K18.120, T20K18_120; (*SWP) sp|O13773|UCP7_SCHPO (e_value=6e-20) UBA domain-containing protein 7 OS=Schizosaccharomyces pombe GN=ucp7; Solyc06g060090.2.1 genomic_reference:SL2.40ch06 gene_region:34386124-34395168 transcript_region:SL2.40ch06:34386124..34395168+ go_terms:GO:0031072 functional_description:"UBA/TS-N domain-containing protein (AHRD V1 *--- C1H097_PARBA); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal " 2 1 12 20 opLeV0100000258 sgn|U213538 CTCGTTACCGCCGCGTCATGGAAGCTCTATAAGAATGGAGTTGGATGTGGTGCATGTTATCAGGTGAGGT Experimental SGN-U590411 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|688424|dbj|BAA05476.1| (e_value=2e-52) tumor-related protein [Nicotiana glauca x Nicotiana langsdorffii]; (*ATH) AT4G17030.1 (e_value=4e-44) Symbol: None | expansin-related, identical to SWISS-PROT:O23547 expansin-related protein 1 precursor (At-EXPR1)(Arabidopsis thaliana); related to expansins, http://www.bio.psu.edu/expansins/ | chr4:9581605-9583309 REVERSE | Aliases: DL4545C, FCAALL.... ; (*SWP) sp|O23547|EXLB1_ARATH (e_value=3e-43) Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1; Solyc08g077910.2.1 genomic_reference:SL2.40ch08 gene_region:58978783-58981044 transcript_region:SL2.40ch08:58978783..58981044+ go_terms:GO:0005576 functional_description:"Expansin-like protein (AHRD V1 ***- Q0WRS3_ARATH); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like " 4 7 4 20 opLeV0100000259 sgn|U220965 AAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGG Experimental SGN-U567507 Tomato 200607#2 [32 ESTs aligned] (*GB) gi|157344042|emb|CAO68975.1| (e_value=0) unnamed; (*ATH) AT3G07990.1 (e_value=0) | Symbol: SCPL27 | serine carboxypeptidase S10 family protein, similar to serine carboxypeptidase II (CP-MII) GB:CAA70815 (Hordeum vulgare) | chr3:2552483-2554927 FORWARD | Aliases: F17A17.33, SCPL27; (*SWP) sp|Q9SFB5|SCP27_ARATH (e_value=0) Serine carboxypeptidase-like 27 OS=Arabidopsis thaliana GN=SCPL27; Solyc04g015340.2.1 genomic_reference:SL2.40ch04 gene_region:5526389-5531684 transcript_region:SL2.40ch04:5526389..5531684- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase K10B2.2 (AHRD V1 **** B6TM29_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase " 4 5 4 20 opLeV0100000260 sgn|U227337 GATCAATACGTGCGGTTCCGTATTGACTTCCCAACAGCATTGAATGAACGGCAGCGTGCTATAATGGAAG Experimental SGN-U571323 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157335819|emb|CAO61649.1| (e_value=6e-150) unnamed; (*ATH) AT1G28210.2 (e_value=4e-129) Symbol: None | DNAJ heat shock protein, putative, strong similarity to mitochondrial DnaJ protein (AtJ1) GI:564030 from (Arabidopsis thaliana); contains Pfam profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal region, PF00684: DnaJ central domai... ; (*SWP) sp|Q38813|DNAJ1_ARATH (e_value=3e-127) Chaperone protein dnaJ 1, mitochondrial OS=Arabidopsis thaliana GN=ATJ1; \N \N 4 1 4 20 opLeV0100000261 sgn|U221967 ACAGAACAGAGCCATTGACAATTACAGCAATTTCAGCTCAAATAGCTGTGGTTCCTTTGGGTCAACTTAT Experimental SGN-U584113 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|15236912|ref|NP_192815.1| (e_value=2e-142) oligopeptide transporter -related [Arabidopsis thaliana]; (*ATH) AT4G10770.1 (e_value=1e-144) Symbol: None | oligopeptide transporter OPT family protein, similar to oligopeptide transporter Opt1p (Candida albicans) GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein | chr4:6628400-6632595 REVERSE | Aliases: T12H20... ; (*SWP) sp|O82485|OPT7_ARATH (e_value=1e-143) Oligopeptide transporter 7 OS=Arabidopsis thaliana GN=OPT7; Solyc08g082990.2.1 genomic_reference:SL2.40ch08 gene_region:62776752-62780190 transcript_region:SL2.40ch08:62776752..62780190+ go_terms:GO:0005427 functional_description:"Oligopeptide transporter 9 (AHRD V1 **** B6SVF4_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 " 4 7 8 20 opLeV0100000262 sgn|U217107 TCCCCCGGGCTGCAGGAAAAATGTCTTCTTCATCTTCATTATTCCCTCTTCTCTTTGTTGCTATATTTCT Experimental SGN-U569754 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|148469859|gb|ABQ65859.1| (e_value=8e-146) serine; (*ATH) AT3G45010.1 (e_value=2e-99) Symbol: SCPL48 | serine carboxypeptidase III, putative, similar to serine carboxypeptidase III from Oryza sativa SP:P37891, Matricaria chamomilla GI:6960455, Hordeum vulgare SP:P21529, Triticum aestivum SP:P11515; contains Pfam profile PF0450 serine... ; (*SWP) sp|Q56WF8|SCP48_ARATH (e_value=2e-98) Serine carboxypeptidase-like 48 OS=Arabidopsis thaliana GN=SCPL48; Solyc11g066250.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49045907-49049862 transcript_region:SL2.40ch11:49045907..49049862- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase (AHRD V1 **** Q9XH61_9ASTR); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase " 4 5 8 20 opLeV0100000263 sgn|U233217 TCAGAACCTGTGTTGTAAAGTGCATCATGGTGAAATTTAGAAGCTTTTTCAAGCCAGTTGGTGAGATCAT Experimental SGN-U591312 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147807640|emb|CAN68846.1| (e_value=4e-20) hypothetical; (*ATH) AT5G42000.1 (e_value=9e-20) | Symbol: None | ORMDL family protein, contains Pfam domain PF04061: ORMDL family | chr5:16816595-16818256 FORWARD | Aliases: MJC20.10, MJC20_10; \N \N 4 1 8 20 opLeV0100000264 sgn|U240482 CATGCTAACAAACCCGAACCCCTACAACATCAAAAATCGACCACACAATGGTCCGTGGACAAAGAAGGTG Experimental SGN-U603249 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147863604|emb|CAN81922.1| (e_value=2e-32) hypothetical; (*ATH) AT4G30935.1 (e_value=1e-21) | Symbol: None | WRKY family transcription factor, contains Pfam profile: PF03106#WRKY DNA -binding domain | chr4:15051820-15054031 REVERSE | Aliases: None; (*SWP) sp|P59583|WRK32_ARATH (e_value=9e-21) Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32; Solyc07g005650.2.1 genomic_reference:SL2.40ch07 gene_region:518591-524775 transcript_region:SL2.40ch07:518591..524775- go_terms:GO:0005515,GO:0003677 functional_description:"WRKY transcription factor (AHRD V1 ***- D4P3Y2_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY " 4 7 12 20 opLeV0100000265 sgn|U213682 CAGCCGGAGGACTATGGATGGGAAGGAGAATAATGGTGTTAATGGTTCAA Experimental SGN-U581525 Tomato 200607#2 [83 ESTs aligned] (*GB) gi|33150481|gb|AAP97136.1| (e_value=0) putative spermine synthase [Lycopersicon esculentum]; (*ATH) AT5G53120.1 (e_value=1e-156) Symbol: None | spermidine synthase, putative / putrescine aminopropyltransferase, putative, similar to SP:O82147 Spermidine synthase (EC 2.5.1.16) (Putrescine aminopropyltransferase) (SPDSY) {Coffea arabica}; contains Pfam profile PF01564: Spermine/... ; (*SWP) sp|O82147|SPDE_COFAR (e_value=1e-114) Spermidine synthase OS=Coffea arabica; Solyc03g007240.2.1 genomic_reference:SL2.40ch03 gene_region:1795042-1800986 transcript_region:SL2.40ch03:1795042..1800986- go_terms:GO:0004766 functional_description:"Spermidine synthase 1 (AHRD V1 **** B6TA19_MAIZE); contains Interpro domain(s) IPR001045 Spermine synthase " 4 5 12 20 opLeV0100000266 sgn|U218173 TAGGTCTGTTCTTTCCGAGCGTGCAAGACGACCTGGTTTGGCGACTAAGTCAGTGTACAAAATGGAGTCC Experimental SGN-U585447 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157344767|emb|CAO70522.1| (e_value=0) unnamed; (*ATH) AT3G48110.1 (e_value=0) Symbol: None | similar to glycyl-tRNA synthetase alpha chain and beta chain [Tropheryma whipplei str. Twist] (GB:AAO44597.1); similar to probable glycyl-tRNA synthetase [Parachlamydia sp. UWE25] (GB:YP_007692.1); similar to putative glycine--tRNA li... ; (*SWP) sp|Q8L785|SYGM2_ARATH (e_value=0) Glycyl-tRNA synthetase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLYRS-2; Solyc01g090200.2.1 genomic_reference:SL2.40ch01 gene_region:75585143-75617181 transcript_region:SL2.40ch01:75585143..75617181+ go_terms:GO:0005737 functional_description:"Glycyl-tRNA synthetase beta subunit (AHRD V1 ***- D2PQC6_KRIFD); contains Interpro domain(s) IPR002311 Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal " 4 3 12 20 opLeV0100000267 sgn|U214455 CAGAGGAGCAGAAGCTGCCATCTGGGACCGGAAGCACTCACGTGAGTTTCGCATCTGCAGGTGTCCTGCA Experimental SGN-U574041 Tomato 200607#2 [66 ESTs aligned] (*GB) gi|147787058|emb|CAN64446.1| (e_value=8e-115) hypothetical; (*ATH) AT5G64170.2 (e_value=5e-71) |; Solyc01g105120.2.1 genomic_reference:SL2.40ch01 gene_region:85139202-85148793 transcript_region:SL2.40ch01:85139202..85148793- functional_description:"Os01g0498200 protein (Fragment) (AHRD V1 *-*- Q0JMJ0_ORYSJ)" 4 1 12 20 opLeV0100000268 sgn|U215756 ATCCATTTAGTGGTGCGAGACCAAGTGACAACAGTGCTCAGAGTGCTCAGCGAAGGACGCAAAGTGGAAG Experimental SGN-U565421 Tomato 200607#2 [32 ESTs aligned] (*GB) gi|79595878|ref|NP_850433.2| (e_value=1e-27) unknown; (*ATH) AT2G45380.1 (e_value=8e-30) Symbol: None | similar to expressed protein [Arabidopsis thaliana] (TAIR:At4g34070.1); similar to putative glycine-rich protein [Oryza sativa (japonica cultivar-group)] (GB:XP_479799.1) | chr2:18706502-18710167 REVERSE | Aliases: F4L23.10, AT2G45370... ; Solyc01g091270.2.1 genomic_reference:SL2.40ch01 gene_region:76686901-76689861 transcript_region:SL2.40ch01:76686901..76689861- functional_description:"AT2G45380 protein (Fragment) (AHRD V1 ***- B9DGW8_ARATH)" 2 4 1 20 opLeV0100000269 sgn|U220297 CTGAGGTTTTTGCTGTTGCATTTGCTCTGCTGGCTGCCGGTGCTGTCATTCTGACACTGAATGTATTGTT Experimental SGN-U570593 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|118484354|gb|ABK94054.1| (e_value=6e-77) unknown; (*ATH) AT4G30260.1 (e_value=4e-78) | Symbol: None | integral membrane Yip1 family protein, contains Pfam domain, PF04893: Yip1 domain | chr4:14816628-14818832 REVERSE | Aliases: F9N11.110, F9N11_110; (*SWP) sp|Q54RZ2|YIPF6_DICDI (e_value=5e-22) Protein YIPF6 homolog OS=Dictyostelium discoideum GN=yipf6; Solyc07g018220.2.1 genomic_reference:SL2.40ch07 gene_region:9780819-9785964 transcript_region:SL2.40ch07:9780819..9785964- go_terms:GO:0017137 functional_description:"Yip1 domain containing protein expressed (AHRD V1 **-- D8L9M4_WHEAT); contains Interpro domain(s) IPR006977 Yip1 domain " 2 2 1 20 opLeV0100000270 sgn|U221683 GCTGCTGTAACTGATGAGCCCGATGAGGACCTCGACGTCGAAGAGGAAAATGAGCCTAATGCAACAGTTT Experimental SGN-U568138 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|18391253|ref|NP_563886.1| (e_value=2e-15) expressed protein [Arabidopsis thaliana]; (*ATH) AT1G11240.1 (e_value=1e-17) | Symbol: None | expressed protein | chr1:3766754-3768294 REVERSE | Aliases: T28P6.24, T28P6_24; Solyc10g009200.2.1 genomic_reference:SL2.40ch10 gene_region:3196501-3199644 transcript_region:SL2.40ch10:3196501..3199644+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019186 Nucleolar protein 12 " 2 8 5 20 opLeV0100000271 sgn|U235595 CAGATTATAAAGCTCACATCAAAACTTGTGGTACTAGAGGCCATTCTTGTGATTGTGGAAGAGTTTTCTC Experimental SGN-U573567 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157343745|emb|CAO68251.1| (e_value=1e-41) unnamed; (*ATH) AT1G68130.1 (e_value=4e-42) | Symbol: None | zinc finger (C2H2 type) family protein, contains Pfam domain, PF00096: Zinc finger, C2H2 type | chr1:25535907-25538249 FORWARD | Aliases: T23K23.2, T23K23_2; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=8e-26) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP; Solyc05g054030.2.1 genomic_reference:SL2.40ch05 gene_region:63157458-63160584 transcript_region:SL2.40ch05:63157458..63160584+ go_terms:GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU3_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type " 2 6 5 20 opLeV0100000272 sgn|U242572 TCCAAGGCTACACTTAGATCAGTTAACCACGAGACATCAAGGGAGGAACTAAGACGGCAACACCAGGCAG Experimental SGN-U581583 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|147775766|emb|CAN64798.1| (e_value=0) hypothetical; (*ATH) AT4G10710.1 (e_value=0) | Symbol: None | transcriptional regulator-related, similar to chromatin-specific transcription elongation factor FACT 140 kDa subunit (GI:5499741) (Homo sapiens) | chr4:6601985-6606350 REVERSE | Aliases: T12H20.3, T12H20_3; (*SWP) sp|Q8H6B1|SPT16_MAIZE (e_value=0) FACT complex subunit SPT16 OS=Zea mays GN=SPT16; Solyc01g101020.2.1 genomic_reference:SL2.40ch01 gene_region:82648492-82651919 transcript_region:SL2.40ch01:82648492..82651919+ go_terms:GO:0042393 functional_description:"FACT complex subunit SPT16 (AHRD V1 ***- D3AWW1_POLPA); contains Interpro domain(s) IPR013953 FACT complex subunit Spt16p/Cdc68p " 2 4 5 20 opLeV0100000273 sgn|U222208 TTGGGAGGATCAAAGTTAGAGGATTACCCAAAGGTGCAAAGCAGGTGGTATGTGATACTGGCAGAGGATG Experimental SGN-U589097 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|4678268|emb|CAB41176.1| (e_value=1e-34) putative protein [Arabidopsis thaliana]; (*ATH) AT3G57790.1 (e_value=9e-37) Symbol: None | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein, weak similarity to SP:P15922 Exo-poly-alpha-D-galacturonosidase precursor (EC 3.2.1.82) (Exo-PG) {Erwinia chrysanthemi}; contains PF00295: Glycosyl ... ; Solyc03g051770.2.1 genomic_reference:SL2.40ch03 gene_region:18737534-18747386 transcript_region:SL2.40ch03:18737534..18747386+ functional_description:"Polygalacturonase-like protein Glycoside hydrolase family 28 (AHRD V1 **-- A5FF89_FLAJ1); contains Interpro domain(s) IPR012334 Pectin lyase fold " 2 2 5 20 opLeV0100000274 sgn|U226052 AGTTCCAATTTCGAAAACATTACAGAGGAGTAATCTGCAGAGGGCACCTTCTCTGCCTGTTAATCAAGAA Experimental SGN-U569107 Tomato 200607#2 [7 ESTs aligned] Solyc07g062740.2.1 genomic_reference:SL2.40ch07 gene_region:62659720-62662289 transcript_region:SL2.40ch07:62659720..62662289- functional_description:"Unknown Protein (AHRD V1)" 2 8 9 20 opLeV0100000275 sgn|U241463 TTTGGGTTCCCCCTAACTTTTTGTTTTTTTCCAGCCTCAAAAGCAAGTTCTTTGGTTTCACTTTCAAGGG Experimental \N \N \N \N 2 6 9 20 opLeV0100000276 sgn|U221511 TAGCGCGACACCGATTCCCTTCCCTCTATCCGTCTCAGCCGCACAAGAACATATGATGACGCCTACAGCT Experimental SGN-U578166 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|30268666|dbj|BAC76004.1| (e_value=7e-45) RelA-SpoT like protein RSH1 [Nicotiana tabacum]; (*ATH) AT4G02260.1 (e_value=6e-31) Symbol: None | RelA/SpoT protein, putative (RSH1), identical to RSH1 (RelA/SpoT homolog) (Arabidopsis thaliana) GI:7141304; contains Pfam profiles PF02824: TGS domain, PF01966: HD domain, PF04607: Region found in RelA / SpoT proteins | chr4:985233-9... ; Solyc09g098580.2.1 genomic_reference:SL2.40ch09 gene_region:67638253-67650510 transcript_region:SL2.40ch09:67638253..67650510+ go_terms:GO:0008728 functional_description:"GTP pyrophosphokinase (AHRD V1 *-** Q3A9Z8_CARHZ); contains Interpro domain(s) IPR007685 RelA/SpoT " 2 4 9 20 opLeV0100000277 sgn|U217539 TATTGGAAGCACTTCAGCTATTAGTGGTTATGGCTTATCAATCCCCACAATGTCATGTGCTATTTATGTG Experimental SGN-U586031 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|147789730|emb|CAN63060.1| (e_value=2e-69) hypothetical; (*ATH) AT5G57040.1 (e_value=4e-64) | Symbol: None | lactoylglutathione lyase family protein / glyoxalase I family protein, contains Pfam PF00903: glyoxalase family protein | chr5:23101131-23102472 REVERSE | Aliases: MHM17.18, MHM17_18; Solyc07g040950.2.1 genomic_reference:SL2.40ch07 gene_region:48524186-48525741 transcript_region:SL2.40ch07:48524186..48525741- go_terms:GO:0004493 functional_description:"Glyoxalase (AHRD V1 ***- C1E5I0_9CHLO); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase " 2 2 9 20 opLeV0100000278 sgn|U226547 AGGATGCGCGGTACTAAGGCTCTATTGAATTTCCCGCATAGAATTGGTTTAAATGAGCCGGAGCCGGTTA Experimental SGN-U576854 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|57012814|sp|Q84XB3|ERF1_SOLLC (e_value=1e-114) Ethylene-responsive; (*ATH) AT5G47220.1 (e_value=1e-40) Symbol: ERF2 | Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box##dependent transcription. Positive regulator... ; (*SWP) sp|Q84XB3|ERF1_SOLLC (e_value=9e-116) Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1; Solyc03g093610.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:48476779-48477507 transcript_region:SL2.40ch03:48476779..48477507+ go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene responsive transcription factor 1b (AHRD V1 **** C0J9I8_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding " 4 6 1 20 opLeV0100000279 sgn|U226910 AGAGTACGAATCCGAAACAAAACTCTATTTGAAAAATCTACCGCTCTTTAAACCGTTACTACCAGCTCTG Experimental SGN-U564413 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147789066|emb|CAN60348.1| (e_value=2e-152) hypothetical; (*ATH) AT5G60020.1 (e_value=2e-140) | Symbol: None | laccase, putative / diphenol oxidase, putative, similar to laccase LAC2-4, Liriodendron tulipifera, EMBL:LTU73106 (GI:1621467) | chr5:24185222-24187688 FORWARD | Aliases: MMN10.20, MMN10_20; (*SWP) sp|Q9FJD5|LAC17_ARATH (e_value=2e-139) Laccase-17 OS=Arabidopsis thaliana GN=LAC17; \N \N 4 4 1 20 opLeV0100000280 sgn|U220263 TAATAGTGGGTTGAGTTGTGGATCTTGCTATGAACTCAAGTGCAATGTCAATGCTGACCCTCGATGGTGT Experimental SGN-U585926 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|28624710|gb|AAL87025.1| (e_value=1e-89) cell wall protein Exp1 precursor [Mirabilis jalapa]; (*ATH) AT2G40610.1 (e_value=8e-85) | Symbol: None | expansin, putative (EXP8), similar to expansin 2 GI:7025493 from (Zinnia elegans); alpha-expansin gene family, PMID:11641069 | chr2:16955941-16957635 REVERSE | Aliases: T2P4.4, T2P4_4; (*SWP) sp|O22874|EXPA8_ARATH (e_value=7e-84) Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8; Solyc09g018020.2.1 genomic_reference:SL2.40ch09 gene_region:12631916-12633843 transcript_region:SL2.40ch09:12631916..12633843+ go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- A5H0F8_CARCN); contains Interpro domain(s) IPR002963 Expansin " 4 2 1 20 opLeV0100000281 sgn|U217044 TTGGAGATGTCACCAACTGTAGCTCGTGTTAGAAGGAATTCCGTAATCTCAGAATCTCCAGCAAGCGAGC Experimental SGN-U576547 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|26190464|emb|CAD56868.1| (e_value=1e-34) cyclin-dependent kinase inhibitor [Nicotiana tabacum]; (*ATH) AT2G23430.1 (e_value=1e-13) Symbol: KRP1 | kip-related protein 1 (KRP1) / cyclin-dependent kinase inhibitor 1 (ICK1), identical to cyclin-dependent kinase inhibitor (ICK1) (Arabidopsis thaliana) GI:3550262, GI:2052502 | chr2:9983826-9985040 REVERSE | Aliases: F26B6.8, F26B6_8,... ; (*SWP) sp|Q67Y93|KRP1_ARATH (e_value=1e-12) Cyclin-dependent kinase inhibitor 1 OS=Arabidopsis thaliana GN=KRP1; Solyc02g090680.2.1 genomic_reference:SL2.40ch02 gene_region:46798032-46799468 transcript_region:SL2.40ch02:46798032..46799468+ go_terms:GO:0019210,GO:0005507 functional_description:"Cyclin-dependent kinase inhibitor 7 (AHRD V1 *-** KRP7_ARATH); contains Interpro domain(s) IPR016701 Cyclin-dependent kinase inhibitor, plant " 4 8 5 20 opLeV0100000282 sgn|U236603 GGCTTTGATGCAACAAGCAGAGCTGCTAAGCTCACTAGCAATGAAAGTTAATACAGAAAATACAGATCAA Experimental \N \N Solyc05g007160.2.1 genomic_reference:SL2.40ch05 gene_region:1752928-1757049 transcript_region:SL2.40ch05:1752928..1757049- go_terms:GO:0003700 functional_description:"Transcription factor C-MYB (AHRD V1 *-** Q766Z9_ORYLA); contains Interpro domain(s) IPR015495 Myb transcription factor " 4 6 5 20 opLeV0100000283 sgn|U241276 CGGCATGCTTCCAGTATCTGCGGGGAACCTTTCCACTTCTCTTACAATGTTTTACGCCAGTTCTTGCAAT Experimental SGN-U604046 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157348366|emb|CAO23153.1| (e_value=3e-44) unnamed; (*ATH) AT1G35710.1 (e_value=3e-29) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, similar to many predicted protein kinases | chr1:13222152-13225893 FORWARD | Aliases: F14D7.1, F14D7_1; (*SWP) sp|Q9LHP4|RCH2_ARATH (e_value=2e-26) Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2; Solyc03g006080.2.1 genomic_reference:SL2.40ch03 gene_region:759901-763527 transcript_region:SL2.40ch03:759901..763527+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK" 4 4 5 20 opLeV0100000284 sgn|U221116 TCATGAAAAGGGACTGGGACCTGCTCCAATTCCTATTGACAAGCTTAGTGTAGAAGGACTCTCTGATGCT Experimental SGN-U571547 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|86440327|gb|ABC96116.1| (e_value=3e-60) sterol; (*ATH) AT1G43620.1 (e_value=5e-49) Symbol: None | UDP-glucose:sterol glucosyltransferase, putative, similar to UDP-glucose:sterol glucosyltransferase (Arabidopsis thaliana) GI:2462931; contains Pfam profile: PF03033 glycosyltransferase family 28 N-terminal domain | chr1:16427872-1643... ; Solyc04g071540.2.1 genomic_reference:SL2.40ch04 gene_region:56116098-56126810 transcript_region:SL2.40ch04:56116098..56126810+ go_terms:GO:0016906 functional_description:"Sterol 3-beta-glucosyltransferase (AHRD V1 **** B6SKE1_MAIZE); contains Interpro domain(s) IPR004276 Glycosyl transferase, family 28 " 4 2 5 20 opLeV0100000285 sgn|U221413 CCGGATATGAATCTTTCTCTGAACTCACTCGCGGCTGTCTCAAGGTCCACAGCATCCATCCTGGCAAAGT Experimental SGN-U581889 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157349223|emb|CAO24369.1| (e_value=7e-35) unnamed; (*ATH) AT3G61200.1 (e_value=6e-31) | Symbol: None | thioesterase family protein, contains Pfam profile PF03061: thioesterase family protein | chr3:22668430-22669365 REVERSE | Aliases: T20K12.100; Solyc01g091570.2.1 genomic_reference:SL2.40ch01 gene_region:76932757-76933910 transcript_region:SL2.40ch01:76932757..76933910+ go_terms:GO:0016291 functional_description:"Thioesterase family protein (AHRD V1 **** D7LS72_ARALY); contains Interpro domain(s) IPR006683 Thioesterase superfamily " 4 8 9 20 opLeV0100000286 sgn|U221946 CCCCCAATGGAAAGGATATTCGTGGCGATTACTTCACGTCTGATAGTGGAATAATACAGTGGCTCGATTC Experimental SGN-U569113 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|209954699|dbj|BAG80540.1| (e_value=0) UDP-glucose:glucosyltransferase; (*ATH) AT4G15480.1 (e_value=5e-142) | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr4:8848849-8850514 REVERSE | Aliases: DL3780C, FCAALL.304; (*SWP) sp|Q9MB73|LGT_CITUN (e_value=6e-168) Limonoid UDP-glucosyltransferase OS=Citrus unshiu; Solyc01g107560.2.1 genomic_reference:SL2.40ch01 gene_region:86827224-86829017 transcript_region:SL2.40ch01:86827224..86829017- go_terms:GO:0050284 functional_description:"UDP-glucosyltransferase 1 (AHRD V1 **** C6ZRH7_CAPAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase " 4 6 9 20 opLeV0100000287 sgn|U234744 CACCGACAGGCGCAACAGCAGGCAAGAAAAGGAGCAGCAAAAGAAGAGGCGGAACAGGCCATAGAGCAAC Experimental \N \N \N \N 4 4 9 20 opLeV0100000288 sgn|U222752 TTTCTTACTTTTCTCTTCCGAAGTAGCTGCAGTAATCAGTTTACTGCTTCTATCTCCATGCTCCACGAGC Experimental \N \N \N \N 4 2 9 20 opLeV0100000289 sgn|U224486 GATTATATACAAGGGAGCCCACAATCACCCAAAACCCCCACCTAACCGTAGATCAGCCCTTGGATCCACA Experimental SGN-U579457 Tomato 200607#2 [29 ESTs aligned] (*GB) gi|13620227|emb|CAC36402.1| (e_value=0) hypothetical protein [Lycopersicon esculentum]; (*ATH) AT5G56270.1 (e_value=2e-158) | Symbol: None | WRKY family transcription factor | chr5:22796919-22800494 FORWARD | Aliases: MXK23.1, MXK23_1; (*SWP) sp|Q9FG77|WRKY2_ARATH (e_value=2e-157) Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2; Solyc07g066220.2.1 genomic_reference:SL2.40ch07 gene_region:64918419-64923896 transcript_region:SL2.40ch07:64918419..64923896- go_terms:GO:0045449 functional_description:"WRKY transcription factor 35 (AHRD V1 ***- Q7XAA6_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY " 2 8 2 20 opLeV0100000290 sgn|U226729 CCAGCTGAATTTGATGGATTACATCCTGCATCCATGGCAAGGTTAGCTGAACAGATGAAGTTAGACCTTT Experimental SGN-U570875 Tomato 200607#2 [3 ESTs aligned] \N \N 2 6 2 20 opLeV0100000291 sgn|U215679 CCCACTTAAAAACCGGCAATTACGACCCAATACTTCATGTCTCAAGTAGCCTATTAATTTTAGGAAGGCA Experimental SGN-U568980 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157350916|emb|CAO41031.1| (e_value=8e-56) unnamed; (*ATH) AT2G02710.2 (e_value=9e-50) | Symbol: None | PAC motif-containing protein, similar to nonphototropic hypocotyl 1 (Zea mays) GI:2687358; contains Pfam profile PF00785: PAC motif | chr2:758693-761012 REVERSE | Aliases: None; (*SWP) sp|O64511|TLOV1_ARATH (e_value=3e-47) Protein Twin LOV 1 OS=Arabidopsis thaliana GN=TLP1; Solyc05g007020.2.1 genomic_reference:SL2.40ch05 gene_region:1607827-1612548 transcript_region:SL2.40ch05:1607827..1612548- go_terms:GO:0005515 functional_description:"Potassium voltage-gated channel subfamily H member 1 (AHRD V1 *--- KCNH1_RAT); contains Interpro domain(s) IPR013655 PAS fold-3 " 2 4 2 20 opLeV0100000292 sgn|U215777 AAAAAAACATTCTCTTCATCCGCCATTAACGCTCGCCGCATCACAAGCTTCGCTCCATCAACAGCACCAT Experimental SGN-U595449 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|5932420|gb|AAD56951.1|AF184886_1 (e_value=2e-39) LIM; (*ATH) AT3G55770.2 (e_value=2e-32) Symbol: None | similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:At2g39900.1); similar to LIM domain protein [Gossypium hirsutum] (GB:AAL38006.1); contains InterPro domain Zn-binding protein, LIM (InterPro:IPR001781) | chr3:20714... ; Solyc05g052780.2.1 genomic_reference:SL2.40ch05 gene_region:62108501-62112460 transcript_region:SL2.40ch05:62108501..62112460+ go_terms:GO:0005246,GO:0042802 functional_description:"LIM domain protein (AHRD V1 **-- Q8VWW1_GOSHI); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type " 2 2 2 20 opLeV0100000293 sgn|U226034 GACCTGCACAAAAGCTTTATCAAAATGTTGGCTTTCAGGTTGTGGAAGTGAAAAATCATAAACTCGCTGA Experimental SGN-U575755 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157342540|emb|CAO65252.1| (e_value=5e-60) unnamed; (*ATH) AT2G06025.1 (e_value=1e-57) Symbol: None | GCN5-related N-acetyltransferase (GNAT) family protein, low similarity to streptothricin acetyltransferase homolog (Campylobacter jejuni) GI:6650363; contains Pfam profile PF00583: acetyltransferase, GNAT family | chr2:2350033-2352154... ; Solyc05g025890.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:37241486-37243177 transcript_region:SL2.40ch05:37241486..37243177- go_terms:GO:0008152 functional_description:"Acetyltransferase (AHRD V1 *-*- D8G8Q7_9CYAN); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase " 2 8 6 20 opLeV0100000294 sgn|U217429 CTCTCTGTTAGTCCAAGCGTGATTGTCTACCTTTCATTCTCCTCAGGTTGGTGTGGTTGCTTCAAATGGA Experimental SGN-U580141 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|157336772|emb|CAO71457.1| (e_value=0) unnamed; (*ATH) AT3G23510.1 (e_value=2e-177) Symbol: None | cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative, similar to cyclopropane synthase (Sterculia foetida) GI:21069167; contains Pfam profile PF02353: Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8427667-8433... ; (*SWP) sp|P31049|YLP3_PSEPU (e_value=2e-39) Uncharacterized methyltransferase in lpd-3 5'region OS=Pseudomonas putida; Solyc09g090500.2.1 genomic_reference:SL2.40ch09 gene_region:65347757-65350794 transcript_region:SL2.40ch09:65347757..65350794+ go_terms:GO:0005515 functional_description:"Cyclopropane-fatty-acyl-phospholipid synthase (AHRD V1 ***- C7LRK7_DESBD); contains Interpro domain(s) IPR003333 Cyclopropane-fatty-acyl-phospholipid synthase " 2 6 6 20 opLeV0100000295 sgn|U233467 GGGTCATTGGGGGATGACTCATCAAAGCCGAATTCCGTTAGAGCACGTTT Experimental SGN-U593091 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|462260|sp|P35055|HEM6_SOYBN (e_value=2e-15) Coproporphyrinogen III oxidase, chloroplast precursor (Coproporphyrinogenase) (Coprogen oxidase); (*ATH) AT1G03475.1 (e_value=3e-17) Symbol: None | coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative, similar to coproporphyrinogen III oxidase, chloroplast (precursor) from Glycine max (SP:P35055), Nicotiana tabacum (SP:Q42946), H... ; (*SWP) sp|P35055|HEM6_SOYBN (e_value=9e-17) Coproporphyrinogen III oxidase, chloroplastic OS=Glycine max GN=CPX; \N \N 2 4 6 20 opLeV0100000296 sgn|U221517 ATAAGGGGGGTATAGGAGCCATATGGGTTGGAGTTCAAGGAGAAGCTTACTTGTAAAACCAGTGTTTTTG Experimental SGN-U563879 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|15239074|ref|NP_196711.1| (e_value=5e-91) expressed protein [Arabidopsis thaliana]; (*ATH) AT5G11500.1 (e_value=4e-93) | Symbol: None | expressed protein, contains Pfam profile PF05670: Domain of unknown function (DUF814) | chr5:3676641-3679347 FORWARD | Aliases: F15N18.90, F15N18_90; (*SWP) sp|Q5R9S1|CCD25_PONAB (e_value=7e-57) Coiled-coil domain-containing protein 25 OS=Pongo abelii GN=CCDC25; Solyc08g068300.2.1 genomic_reference:SL2.40ch08 gene_region:54605786-54613571 transcript_region:SL2.40ch08:54605786..54613571+ go_terms:GO:0005515 functional_description:"Coiled-coil domain-containing protein 25 (AHRD V1 ***- B4G0U8_MAIZE); contains Interpro domain(s) IPR008532 Protein of unknown function DUF814 " 2 2 6 20 opLeV0100000297 sgn|U215603 TAATAGCCTTTATGGTGGTTTAGACCGGCTTGCGAAGACATTGTCCGTGGACCGGGCGGTCGGAAAATGT Experimental SGN-U592175 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|110293351|gb|ABG66307.1| (e_value=1e-50) CCR4; (*ATH) AT3G44260.1 (e_value=8e-43) | Symbol: None | CCR4-NOT transcription complex protein, putative, similar to SWISS-PROT:Q9UFF9 CCR4-NOT transcription complex, subunit 8 (CAF1-like protein, CALIFp) (Homo sapiens) | chr3:15963032-15964071 REVERSE | Aliases: T10D17.50; (*SWP) sp|Q3KQ85|CNOT7_XENLA (e_value=1e-18) MCCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7; Solyc06g074030.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42156677-42157471 transcript_region:SL2.40ch06:42156677..42157471- go_terms:GO:0000175 functional_description:"CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 " 2 8 10 20 opLeV0100000298 sgn|U226480 TGCTGAAAACCCCAAAACATGTCTGACCATACATGTTGTTATCGTTGCACCAAATTCATATTAACTGCAG Experimental SGN-U580402 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|38489222|gb|AAR21296.1| (e_value=1e-73) NDR1-like protein [Nicotiana benthamiana]; (*ATH) AT3G20600.1 (e_value=9e-28) Symbol: None | non-race specific disease resistance protein (NDR1), identical to non-race specific disease resistance protein (NDR1) GB:AF021346 (Arabidopsis thaliana) (Science 278 (5345), 1963-1965 (1997)) | chr3:7194852-7195742 FORWARD | Aliases: ... ; Solyc12g005230.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:147174-153831 transcript_region:SL2.40ch12:147174..153831+ functional_description:"Breast carcinoma amplified sequence 3 (Fragment) (AHRD V1 *--- B1AR77_MOUSE); contains Interpro domain(s) IPR010847 Harpin-induced 1 " 2 6 10 20 opLeV0100000299 sgn|U213431 TCAGAAGCCAGGTGGCAATCCACTCACCAAATTATTAGCAACTGGAATTGCAGACTATGAGGCAGATAAA Experimental SGN-U578818 Tomato 200607#2 [80 ESTs aligned] (*GB) gi|85068618|gb|ABC69389.1| (e_value=0) CYP72A52v1; (*ATH) AT3G14690.1 (e_value=5e-164) | Symbol: None | cytochrome P450, putative, similar to GB:Q05047 from (Catharanthus roseus) | chr3:4937386-4939472 FORWARD | Aliases: MIE1.19; (*SWP) sp|Q05047|C72A1_CATRO (e_value=5e-164) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1; Solyc10g051020.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:46848983-46854212 transcript_region:SL2.40ch10:46848983..46854212- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450" 2 4 10 20 opLeV0100000300 sgn|U215736 CTGTGGATCCCCTGTTGGAGAAATCTCCATCCTATTTGGCTTCTCAGCTTTAGAGCTTCCGCTTTAGTTG Experimental SGN-U595016 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|22775620|dbj|BAC15474.1| (e_value=6e-16) unknown; (*ATH) AT1G10660.4 (e_value=1e-12) | Symbol: None | expressed protein | chr1:3532474-3535132 FORWARD | Aliases: None; Solyc06g009380.2.1 genomic_reference:SL2.40ch06 gene_region:3296045-3299359 transcript_region:SL2.40ch06:3296045..3299359- functional_description:"mRNA clone RAFL24-05-D16 (AHRD V1 ***- Q67YW5_ARATH)" 2 2 10 20 opLeV0100000301 sgn|U225107 TGGGATCTTAACAGGATTGGTGACGAGCAATTGGAAGGGGAAGCTGAAGACGGACCGTCAGAACTTCTTT Experimental SGN-U563227 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157340578|emb|CAO47383.1| (e_value=2e-172) unnamed; (*ATH) AT2G16780.1 (e_value=2e-163) | Symbol: None | WD-40 repeat protein (MSI2), contains 5 WD-40 repeats (PF0400); identical to WD-40 repeat protein MSI2 (SP:O22468) (Arabidopsis thaliana) WD-40 repeats (PF0400); | chr2:7288544-7290715 REVERSE | Aliases: T24I21.19, T24I21_19; (*SWP) sp|O22468|MSI2_ARATH (e_value=2e-162) WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana GN=MSI2; Solyc01g111590.2.1 genomic_reference:SL2.40ch01 gene_region:89573829-89576771 transcript_region:SL2.40ch01:89573829..89576771- go_terms:GO:0042393 functional_description:"Histone-binding protein RBBP7 (AHRD V1 **-* B5X3G4_SALSA); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region " 4 8 2 20 opLeV0100000302 sgn|U241544 ATGGAGCAGGAGGAGGAGGGTTTAGGGCCAAATTGGAGCATGTATTATATAGCGGTGAGAAGAAGCACGT Experimental SGN-U569555 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|145688390|gb|ABC69274.2| (e_value=2e-50) putative; (*ATH) AT1G80920.1 (e_value=2e-40) Symbol: None | DNAJ heat shock N-terminal domain-containing protein, similar to SP:Q05646 Chaperone protein dnaJ Erysipelothrix rhusiopathiae, SP:P45555 Chaperone protein dnaJ (HSP40) Staphylococcus aureus; contains Pfam profile PF00226 DnaJ domain ... ; (*SWP) sp|Q9SAG8|DNAJ8_ARATH (e_value=1e-39) Chaperone protein dnaJ 8, chloroplastic OS=Arabidopsis thaliana GN=ATJ8; Solyc03g117580.2.1 genomic_reference:SL2.40ch03 gene_region:60752071-60755357 transcript_region:SL2.40ch03:60752071..60755357+ functional_description:"Os08g0272000 protein (Fragment) (AHRD V1 ***- Q0J6S6_ORYSJ)" 4 6 2 20 opLeV0100000303 sgn|U215791 ACATGCATTATAAGCAGGACAACTAAACGCTGGGCTGTAGACCAAGTCCTTTGCGCGTCTTTCCAACAAA Experimental SGN-U580395 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157356245|emb|CAO62380.1| (e_value=4e-121) unnamed; (*ATH) AT3G44190.1 (e_value=6e-116) Symbol: None | pyridine nucleotide-disulphide oxidoreductase family protein, low similarity to dihydrolipoamide dehydrogenase from Clostridium magnum (GI:472330); contains Pfam profile PF00070 Pyridine nucleotide-disulphide oxidoreductase domain | c... ; (*SWP) sp|Q54NS9|AIFA_DICDI (e_value=5e-37) Apoptosis-inducing factor homolog A OS=Dictyostelium discoideum GN=aifA; \N \N 4 4 2 20 opLeV0100000304 sgn|U219119 CACTTCCTCTCAATGGGGAGTAATGGTGACCAAGCTAAATGTCCCAACCGATTGGAAAGAGTGGCAGATT Experimental SGN-U571095 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|217073440|gb|ACJ85079.1| (e_value=4e-126) unknown; (*ATH) AT3G52190.1 (e_value=5e-114) | Symbol: None | transducin family protein / WD-40 repeat family protein, similar to St12p protein (GI:166878) {Arabidopsis thaliana}; contains Pfam profile: PF00400 WD domain, G-beta repeat | chr3:19364950-19368036 REVERSE | Aliases: T25B15.3; (*SWP) sp|Q8GYE0|PHF1_ARATH (e_value=5e-113) SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1; Solyc11g007780.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2017935-2024842 transcript_region:SL2.40ch11:2017935..2024842+ go_terms:GO:0000166 functional_description:"Guanine nucleotide-binding protein subunit beta-like protein (AHRD V1 *--* GBLP_TRYBR); contains Interpro domain(s) IPR017986 WD40 repeat, region " 4 2 2 20 opLeV0100000305 sgn|U220196 CAGAAGGTCCTAATTGTGTTGGACGGGATTGCATTCCAGTTACTGATAAGCGGCTGAGCCGCAAGCATCT Experimental SGN-U570207 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157360468|emb|CAO69691.1| (e_value=1e-62) unnamed; (*ATH) AT5G15170.1 (e_value=3e-62) | Symbol: None | tyrosyl-DNA phosphodiesterase-related, similar to Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase (Tdp1) (Homo sapiens) GI:20150581 | chr5:4926097-4929505 REVERSE | Aliases: F8M21.60, F8M21_60; Solyc03g031820.2.1 genomic_reference:SL2.40ch03 gene_region:8570866-8581903 transcript_region:SL2.40ch03:8570866..8581903- go_terms:GO:0017005 functional_description:"Tyrosyl-DNA phosphodiesterase 1 (AHRD V1 **** B8JJC1_MOUSE); contains Interpro domain(s) IPR010347 Tyrosyl-DNA phosphodiesterase " 4 8 6 20 opLeV0100000306 sgn|U214726 CTTTCTTCTTTATACTGATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGG Experimental SGN-U571254 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|147858134|emb|CAN83936.1| (e_value=3e-96) hypothetical; (*ATH) AT3G49870.1 (e_value=5e-95) Symbol: ATARLA1C | ADP-ribosylation factor, putative, similar to ADP-ribosylation factor-like protein 1 (SP:P40616) (Homo sapiens); ARF3 ADP-RIBOSYLATION FACTOR,GP:453191 Arabidopsis thaliana; contains domain PF00025: ADP-ribosylation factor family ... ; (*SWP) sp|Q5ZKQ8|ARL8A_CHICK (e_value=9e-69) ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A; Solyc02g092330.2.1 genomic_reference:SL2.40ch02 gene_region:48003857-48008036 transcript_region:SL2.40ch02:48003857..48008036- go_terms:GO:0015031,GO:0005525,GO:0005622 functional_description:"ADP-RIBOSYLATION FACTOR-like protein (AHRD V1 ***- Q8VY57_ARATH); contains Interpro domain(s) IPR006688 ADP-ribosylation factor " 4 6 6 20 opLeV0100000307 sgn|U233377 CCAATTGTTGTATGGTTACTCTCAGCCGGATTGTTTAGACCATGCAATGATGTAACATCCACTTTGTTAC Experimental SGN-U588901 Tomato 200607#2 [1 ESTs aligned] Solyc09g098550.2.1 genomic_reference:SL2.40ch09 gene_region:67616259-67625847 transcript_region:SL2.40ch09:67616259..67625847+ functional_description:"UBX domain-containing protein (AHRD V1 *-*- D7LJY9_ARALY); contains Interpro domain(s) IPR001012 UBX " 4 2 6 20 opLeV0100000308 sgn|U213011 CTTATACAAAACTGCCCAGGCAGAGGAATAATCATAACCGGACCTGCTCCACAGGGTTCCGGCTTTGATT Experimental SGN-U578696 Tomato 200607#2 [189 ESTs aligned] (*GB) gi|217072906|gb|ACJ84813.1| (e_value=7e-106) unknown; (*ATH) AT4G02860.1 (e_value=2e-92) Symbol: None | similar to phenazine biosynthesis PhzC/PhzF family protein [Arabidopsis thaliana] (TAIR:At1g03210.1); similar to phenazine biosynthesis family protein [Oryza sativa (japonica cultivar-group)] (GB:AAU89223.1); contains InterPro domain ... ; (*SWP) sp|Q9KG32|Y283_BACHD (e_value=3e-53) Uncharacterized isomerase BH0283 OS=Bacillus halodurans GN=BH0283; Solyc09g064940.2.1 genomic_reference:SL2.40ch09 gene_region:58086206-58088531 transcript_region:SL2.40ch09:58086206..58088531+ go_terms:GO:0009058 functional_description:"Phenazine biosynthesis protein PhzF family (AHRD V1 ***- B4VKV9_9CYAN); contains Interpro domain(s) IPR003719 Phenazine biosynthesis PhzC/PhzF protein " 4 8 10 20 opLeV0100000309 sgn|U231038 GCTACTCTAGAGCGTAATCCAAATGCATTCAGACCTAAAATCGCCAGCAGTCCCCATGGAACTCGAGAGG Experimental SGN-U570452 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157342790|emb|CAO65502.1| (e_value=6e-152) unnamed; (*ATH) AT4G29000.1 (e_value=4e-134) Symbol: None | tesmin/TSO1-like CXC domain-containing protein, similar to CXC domain containing TSO1-like protein 1 (SOL1) (Arabidopsis thaliana) GI:7767427, SP:Q9Y4I5 Tesmin (Metallothionein-like 5, testis-specific) {Homo sapiens}; contains Pfam pr... ; (*SWP) sp|Q08CM4|LIN54_DANRE (e_value=7e-43) Protein lin-54 homolog OS=Danio rerio GN=lin54; Solyc07g020710.2.1 genomic_reference:SL2.40ch07 gene_region:13283922-13300852 transcript_region:SL2.40ch07:13283922..13300852+ go_terms:GO:0005515,GO:0003700 functional_description:"Tesmin/TSO1-like CXC domain-containing protein (AHRD V1 *--- Q54TZ5_DICDI); contains Interpro domain(s) IPR005172 Tesmin/TSO1-like, CXC " 4 6 10 20 opLeV0100000310 sgn|U214562 CGGGATGCATTGATCCAGATTCTCCCCAGTATAATCCACTAGCCAATGTAGATGATGGATCTTGTCCACC Experimental SGN-U581329 Tomato 200607#2 [62 ESTs aligned] (*GB) gi|114149950|gb|ABI51594.1| (e_value=8e-139) chloroplast; (*ATH) AT3G15840.1 (e_value=7e-101) | Symbol: None | expressed protein | chr3:5356645-5358507 REVERSE | Aliases: MSJ11.24, MSJ11_24; Solyc12g042770.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43642840-43645284 transcript_region:SL2.40ch12:43642840..43645284- functional_description:"Chloroplast post-illumination chlorophyll fluorescence increase protein (AHRD V1 **-- A1Y9I8_TOBAC)" 4 4 10 20 opLeV0100000311 sgn|U235340 TATATCTTCACTCACATTGGCTGCTGAAGCCACTGACGTCAAGTTATCCTCCGCCCGCACAGGGTACGTC Experimental SGN-U567777 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|157348963|emb|CAO24041.1| (e_value=0) unnamed; (*ATH) AT3G21630.1 (e_value=4e-163) | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr3:7615416-7618588 REVERSE | Aliases: MIL23.20; (*SWP) sp|Q9LQQ8|RLCK7_ARATH (e_value=2e-52) Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870; Solyc07g049180.2.1 genomic_reference:SL2.40ch07 gene_region:56760988-56770880 transcript_region:SL2.40ch07:56760988..56770880- go_terms:GO:0019199,GO:0005057 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 4 2 10 20 opLeV0100000312 sgn|U241081 CTTCTAGCAGCTTGAGTACCTCAAGATTTGAAAGGGTTGCGACTTCATTAAGATCTATCCGGAAATAGGA Experimental SGN-U604757 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|76363951|gb|ABA41595.1| (e_value=6e-32) JJH-R-like; (*SWP) sp|Q6L3L0|R1B23_SOLDE (e_value=2e-15) Putative late blight resistance protein homolog R1B-23 OS=Solanum demissum GN=R1B-23; Solyc05g007610.2.1 genomic_reference:SL2.40ch05 gene_region:2136050-2142660 transcript_region:SL2.40ch05:2136050..2142660+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain" 2 8 3 20 opLeV0100000313 sgn|U218304 GGGGACACATCGTTCGCCAAGGACCTCGAGTCAATCCAAGCCTTTGGTTTCCTTTCCTCTTCCGGAATGG Experimental SGN-U577808 Tomato 200607#2 [5 ESTs aligned] \N \N 2 6 3 20 opLeV0100000314 sgn|U220064 TTCAGAAAATTGTGACACCAGAGGTGGAGCAAGTTGATGATCTTGACTCAACTGTCAGAGGCTCTGGTGG Experimental SGN-U577318 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|416922|sp|P32518|DUT_SOLLC (e_value=1e-89) RecName:; (*ATH) AT3G46940.1 (e_value=5e-69) | Symbol: None | deoxyuridine 5'-triphosphate nucleotidohydrolase family, contains Pfam profile: PF00692 deoxyuridine 5'-triphosphate nucleotidohydrolase | chr3:17298756-17299937 REVERSE | Aliases: F13I12.6; (*SWP) sp|P32518|DUT_SOLLC (e_value=9e-91) Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Solanum lycopersicum; Solyc01g100030.2.1 genomic_reference:SL2.40ch01 gene_region:81869800-81871185 transcript_region:SL2.40ch01:81869800..81871185+ go_terms:GO:0046080 functional_description:"Deoxyuridine 5&apos-triphosphate nucleotidohydrolase (AHRD V1 ***- D0NVQ2_PHYIN); contains Interpro domain(s) IPR008181 DeoxyUTP pyrophosphatase subfamily 1 " 2 4 3 20 opLeV0100000315 sgn|U214501 CTGATAAAGAGAGGCTGGAGCATTTGGTGAAAGCTGGGATTAACGCTCTCGTGATTGATAGCTCGCAAGG Experimental SGN-U577411 Tomato 200607#2 [52 ESTs aligned] (*GB) gi|156763655|gb|ABU94684.1| (e_value=0) inosine-5'-monophosphate; (*ATH) AT1G16350.1 (e_value=0) Symbol: None | inosine-5'-monophosphate dehydrogenase, putative, strong similarity to SP:P47996 gb:L34684 inosine monophosphate dehydrogenase (IMPDH) from Arabidopsis thaliana; member of the PF:00478 IMP dehydrogenase family | chr1:5590945-5592866 F... ; (*SWP) sp|Q9SA34|IMDH2_ARATH (e_value=0) Probable inosine-5'-monophosphate dehydrogenase OS=Arabidopsis thaliana GN=At1g16350; Solyc10g079500.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60360530-60363081 transcript_region:SL2.40ch10:60360530..60363081+ go_terms:GO:0008152,GO:0055114 functional_description:"Inosine-5&apos-monophosphate dehydrogenase (AHRD V1 ***- A7XZM6_CAMSI); contains Interpro domain(s) IPR005990 IMP dehydrogenase " 2 2 3 20 opLeV0100000316 sgn|U218493 CTTTCTTCCGTTTCCATGGACCCTTATATGCTGGGTTAGGAATTTTTGGTGGTCTCCAGATGCCATCCTC Experimental SGN-U574448 Tomato 200607#2 [28 ESTs aligned] (*GB) gi|157348227|emb|CAO22937.1| (e_value=0) unnamed; (*ATH) AT1G08450.1 (e_value=3e-170) | Symbol: None | calreticulin 3 (CRT3), identical to similar to SP:O04153 Calreticulin 3 precursor {Arabidopsis thaliana} | chr1:2667836-2671822 REVERSE | Aliases: T27G7.13, T27G7_13; (*SWP) sp|O04153|CALR3_ARATH (e_value=2e-169) Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3; Solyc05g056230.2.1 genomic_reference:SL2.40ch05 gene_region:64732387-64738654 transcript_region:SL2.40ch05:64732387..64738654- go_terms:GO:0005509 functional_description:"Calreticulin 2 calcium-binding protein (AHRD V1 **** A8HMC0_CHLRE); contains Interpro domain(s) IPR009169 Calreticulin " 2 8 7 20 opLeV0100000317 Z24741 TTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTAT Experimental SGN-U580634 Tomato 200607#2 [415 ESTs aligned] (*GB) gi|1170936|sp|P43280|METK1_SOLLC (e_value=0) S-adenosylmethionine; (*ATH) AT4G01850.2 (e_value=0) |; (*SWP) sp|P43280|METK1_SOLLC (e_value=0) S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1; Solyc01g101060.2.1 genomic_reference:SL2.40ch01 gene_region:82678819-82681422 transcript_region:SL2.40ch01:82678819..82681422+ go_terms:GO:0006730 functional_description:"S-adenosylmethionine synthase (AHRD V1 ***- B8LFH4_IPOBA); contains Interpro domain(s) IPR002133 S-adenosylmethionine synthetase " 2 6 7 20 opLeV0100000318 sgn|U239927 TGATCAACAGGGGTAATATCCCCAGCTAGGGTTAACAAAAAAGGTGGTAAAGAACCTAAGTGATATATCC Experimental SGN-U594937 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157336383|emb|CAO71068.1| (e_value=1e-77) unnamed; (*ATH) AT3G06260.1 (e_value=5e-77) | Symbol: None | galactinol synthase, putative, contains Pfam profile: PF01501 glycosyl transferase family 8 | chr3:1893810-1894865 REVERSE | Aliases: F28L1.20, F28L1_20; (*SWP) sp|Q9LSG3|QUA1_ARATH (e_value=9e-11) Glycosyltransferase QUASIMODO1 OS=Arabidopsis thaliana GN=QUA1; Solyc06g008910.2.1 genomic_reference:SL2.40ch06 gene_region:2846874-2848623 transcript_region:SL2.40ch06:2846874..2848623- go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 " 2 4 7 20 opLeV0100000319 sgn|U226179 TGCCAGTGTGAAACCTTCCTCTATAGAAACCATATGGTTCATAGAGCTTGCTAAAGTTGTTGAGGAATTC Experimental SGN-U581015 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157359564|emb|CAO67776.1| (e_value=5e-40) unnamed; (*ATH) AT3G11980.1 (e_value=8e-42) | Symbol: None | male sterility protein 2 (MS2), identical to male sterility protein 2 (MS2) SP:Q08891 (Arabidopsis thaliana) | chr3:3814242-3817123 FORWARD | Aliases: MEC18.1; (*SWP) sp|Q08891|MS2_ARATH (e_value=7e-41) Male sterility protein 2 OS=Arabidopsis thaliana GN=MS2; Solyc09g009580.2.1 genomic_reference:SL2.40ch09 gene_region:2998275-3003078 transcript_region:SL2.40ch09:2998275..3003078+ go_terms:GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **** Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding " 2 2 7 20 opLeV0100000320 sgn|U214895 CCTGCTGCTACATCTTCGACATCAAGGTCACGCATGTAATGCACAAGGAGGCAGGGCAGTTTGGAATGGT Experimental SGN-U595136 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118488579|gb|ABK96102.1| (e_value=6e-43) unknown; (*ATH) AT4G29010.1 (e_value=2e-41) Symbol: None | abnormal inflorescence meristem 1 / fatty acid multifunctional protein (AIM1), identical to gi:4337025; contains Pfam profiles PF02737 (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain), PF00378 (enoyl-CoA hydratase/isomerase famil... ; (*SWP) sp|Q8W1L6|MFP_ORYSJ (e_value=8e-39) Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP; \N \N 2 8 11 20 opLeV0100000321 sgn|U227085 GATGTCGAGTCACCTGGTGATGCCATTCTGAAAGCTAGTGTTGCCACTGAGGCAATTGAGAAAGTATACC Experimental SGN-U583533 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|147820684|emb|CAN69823.1| (e_value=3e-153) hypothetical; (*ATH) AT1G79230.1 (e_value=3e-153) Symbol: None | mercaptopyruvate sulfurtransferase (MST1) (RDH1), identical to mercaptopyruvate sulfurtransferase GI:6009981 and thiosulfate sulfurtransferase GI:5834508 from (Arabidopsis thaliana) | chr1:29805586-29808832 FORWARD | Aliases: YUP8H12R... ; (*SWP) sp|P97532|THTM_RAT (e_value=4e-59) 3-mercaptopyruvate sulfurtransferase OS=Rattus norvegicus GN=Mpst; Solyc02g078990.2.1 genomic_reference:SL2.40ch02 gene_region:38173616-38185542 transcript_region:SL2.40ch02:38173616..38185542+ go_terms:GO:0004792,GO:0016784 functional_description:"Mercaptopyruvate sulfurtransferase-like protein (AHRD V1 **** C0LIR4_SOLLC); contains Interpro domain(s) IPR001763 Rhodanese-like " 2 6 11 20 opLeV0100000322 sgn|U216443 CAATAATGAGCTAAATGTGTTACATTCCTAGCCTATTCCGGTGTTTGGCTGGGTGGAGCTACGAGTCGGT Experimental SGN-U579574 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|157340792|emb|CAO47597.1| (e_value=2e-39) unnamed; (*ATH) AT2G16365.2 (e_value=4e-12) | Symbol: None | F-box family protein, contains Pfam:PF00646 F-box domain | chr2:7081444-7083731 FORWARD | Aliases: None; \N \N 2 4 11 20 opLeV0100000323 sgn|U221950 GTCGTGGGCATACTTTGGGACCGGAACACATTCAACCCGTTGATAAATACTGCAGAAGTGGCATCACTAT Experimental SGN-U571273 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157358663|emb|CAO66348.1| (e_value=2e-73) unnamed; (*ATH) AT1G28960.4 (e_value=2e-65) | Symbol: None | MutT/nudix family protein, similar to coenzyme A diphosphatase (Mus musculus) GI:12746410; contains Pfam profile PF00293: NUDIX domain | chr1:10109585-10111646 REVERSE | Aliases: None; (*SWP) sp|Q8GYB1|NUD15_ARATH (e_value=1e-64) Nudix hydrolase 15, mitochondrial OS=Arabidopsis thaliana GN=NUDT15; Solyc10g008760.2.1 genomic_reference:SL2.40ch10 gene_region:2830967-2833275 transcript_region:SL2.40ch10:2830967..2833275- go_terms:GO:0003986,GO:0010945 functional_description:"NUDIX hydrolase (AHRD V1 **** Q4ZWZ8_PSEU2); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain " 2 2 11 20 opLeV0100000324 sgn|U237575 CGTAGCTCTACCCTGCATTTCAATAATCTACAAAAGGTTGTTTTCATAACTCAAACCTGGGACCTCATGA Experimental SGN-U589008 Tomato 200607#2 [1 ESTs aligned] \N \N 4 8 3 20 opLeV0100000325 sgn|U213512 CACTGACCGTCATGAAGAAGGTGATCACCACCAAGAGTGTGAAATACATG Experimental SGN-U576034 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|37050896|emb|CAE47557.1| (e_value=1e-96) seven-transmembrane-domain protein 1 [Lycopersicon esculentum]; (*ATH) AT3G28007.1 (e_value=1e-53) | Symbol: None | nodulin MtN3 family protein, contains Pfam PF03083 MtN3/saliva family; similar to LIM7 GI:431154 (induced in meiotic prophase in lily microsporocytes) from (Lilium longiflorum) | chr3:10409336-10410956 REVERSE | Aliases: None; (*SWP) sp|Q8LFH5|RPG1_ARATH (e_value=2e-35) Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1; Solyc06g071400.2.1 genomic_reference:SL2.40ch06 gene_region:40318689-40320251 transcript_region:SL2.40ch06:40318689..40320251+ go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_CAEBR); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue " 4 6 3 20 opLeV0100000326 sgn|U232081 CTCGCAACTTAGATTATAGCGATCCACCTTCCCTCGCCTCTCTTTATCCTCGAACCTACTATGAAATCAA Experimental SGN-U591368 Tomato 200607#2 [1 ESTs aligned] \N \N 4 4 3 20 opLeV0100000327 sgn|U217382 ATGAAGACGACGACGACGCTGGCGATCGGGGCATAGATTCTAAATCTACAATTCTTATTGAAGGAGGAAA Experimental SGN-U564334 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|47681363|gb|AAT37497.1| (e_value=4e-49) N-like protein [Nicotiana tabacum]; (*ATH) AT1G72840.1 (e_value=2e-39) | Symbol: None | disease resistance protein (TIR-NBS-LRR class), putative, domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. | chr1:27412963-27417284 REVERSE | Aliases: F3N23.4, F3N23_4; (*SWP) sp|Q40392|TMVRN_NICGU (e_value=3e-49) TMV resistance protein N OS=Nicotiana glutinosa GN=N; Solyc12g096900.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63974111-63976557 transcript_region:SL2.40ch12:63974111..63976557+ go_terms:GO:0030246 functional_description:"Tir, resistance protein fragment" 4 2 3 20 opLeV0100000328 sgn|U226827 GAAGTTGCTCGAATATGTGTGGCCGCTCTGAAAAGCCCCTATGCATGTGACAAGACATTTGAGGTTAAAA Experimental SGN-U582170 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157354703|emb|CAO48021.1| (e_value=2e-55) unnamed; (*ATH) AT4G18810.1 (e_value=3e-54) | Symbol: None | expressed protein, similar to UV-B and ozone similarly regulated protein 1 UOS1 (Pisum sativum) GI:20339364 | chr4:10322449-10325781 REVERSE | Aliases: F28A21.220, F28A21_220; Solyc02g072160.2.1 genomic_reference:SL2.40ch02 gene_region:36050355-36058273 transcript_region:SL2.40ch02:36050355..36058273+ go_terms:GO:0008152 functional_description:"NADH ubiquinone oxidoreductase complex I intermediate-associated protein 30 (AHRD V1 **-- B2IZH1_NOSP7); contains Interpro domain(s) IPR013857 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 " 4 8 7 20 opLeV0100000329 sgn|U216554 GACTGAGTGATGTTTGCCCTGGCTGGTTAATGTTAAGACCCGAGGCTGTTCGATCAAGTAAAGGAAACTG Experimental SGN-U577583 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|15824408|gb|AAL09328.1|AF302806_1 (e_value=2e-117) steroleosin; (*ATH) AT5G50600.1 (e_value=4e-109) | Symbol: None | short-chain dehydrogenase/reductase (SDR) family protein, similar to sterol-binding dehydrogenase steroleosin GI:15824408 from (Sesamum indicum) | chr5:20606928-20608913 REVERSE | Aliases: MFB16.22; (*SWP) sp|A4IGM4|DHI1L_XENTR (e_value=9e-28) Hydroxysteroid 11-beta-dehydrogenase 1-like protein OS=Xenopus tropicalis GN=hsd11b1l; Solyc03g097440.2.1 genomic_reference:SL2.40ch03 gene_region:53209998-53213148 transcript_region:SL2.40ch03:53209998..53213148+ go_terms:GO:0003845 functional_description:"11-beta-hydroxysteroid dehydrogenase-like (AHRD V1 **** Q9LUF1_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase " 4 6 7 20 opLeV0100000330 sgn|U238675 AATCCCCTGACGGAAATCGGGCTTGTACTCCATGCGGAAATTGGGCACATACTTGCTGATCACGGCATGT Experimental SGN-U597395 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|170290251|ref|YP_001737067.1| (e_value=8e-19) NAD-dependent; (*SWP) sp|Q49VA1|Y2164_STAS1 (e_value=1e-13) Uncharacterized epimerase/dehydratase SSP2164 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP2164; \N \N 4 4 7 20 opLeV0100000331 sgn|U213289 CATTCAACTTGTCCATCAAACATCCAGTGTCAATGATCGATCAAAAGCTTCTGATCAACTGTACTGCTGC Experimental SGN-U587008 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|10047455|gb|AAG12251.1|AF205130_1 (e_value=1e-65) guanylate; (*ATH) AT3G57550.1 (e_value=3e-42) | Symbol: None | guanylate kinase 2 (GK-2), identical to guanylate kinase (GK-2) (Arabidopsis thaliana) gi:7861798:gb:AAF70409 | chr3:21317700-21320441 FORWARD | Aliases: T8H10.150; (*SWP) sp|Q64520|KGUA_MOUSE (e_value=3e-21) Guanylate kinase OS=Mus musculus GN=Guk1; Solyc10g079140.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60076614-60079724 transcript_region:SL2.40ch10:60076614..60079724+ go_terms:GO:0006163 functional_description:"Guanylate kinase (AHRD V1 ***- Q9FVC6_TOBAC); contains Interpro domain(s) IPR017665 Guanylate kinase, sub-group " 4 2 7 20 opLeV0100000332 sgn|U226930 CGTCGAAAGTTATAGTGATTCTGCCCCTTAAGTTCTCATCTGGCAGAACATATCTTGCAACAGGACCTCG Experimental SGN-U579769 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|147779898|emb|CAN74783.1| (e_value=2e-99) hypothetical; (*ATH) AT4G17830.1 (e_value=8e-101) | Symbol: None | peptidase M20/M25/M40 family protein, similar to acetylornithine deacetylase (Acetylornithinase, AO; N-acetylornithinase, NAO) (Dictyostelium discoideum) SWISS-PROT:P54638 | chr4:9915893-9918256 FORWARD | Aliases: T6K21.10; (*SWP) sp|P54638|ARGE_DICDI (e_value=6e-53) Acetylornithine deacetylase OS=Dictyostelium discoideum GN=argE; Solyc08g076990.2.1 genomic_reference:SL2.40ch08 gene_region:58097110-58102792 transcript_region:SL2.40ch08:58097110..58102792- go_terms:GO:0016787,GO:0008152 functional_description:"Acetylornithine deacetylase (AHRD V1 ***- B6TIJ2_MAIZE); contains Interpro domain(s) IPR011650 Peptidase M20, dimerisation " 4 8 11 20 opLeV0100000333 sgn|U213589 CTAAACCAAAGCCATCATGTCCACCACCACCATATGTACCAAAATACAAGACTTGTCCAATTGATACCTT Experimental SGN-U591812 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|60459393|gb|AAX20042.1| (e_value=9e-28) proline-rich; (*ATH) AT2G45180.1 (e_value=2e-27) Symbol: None | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein, similar to 14 kDa polypeptide (Catharanthus roseus) GI:407410; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 | chr2:18633413-186339... ; (*SWP) sp|P14009|14KD_DAUCA (e_value=4e-22) 14 kDa proline-rich protein DC2.15 OS=Daucus carota; Solyc08g005960.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:725778-726188 transcript_region:SL2.40ch08:725778..726188- go_terms:GO:0006869 functional_description:"Cortical cell-delineating protein (AHRD V1 *--- B6U436_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical " 4 6 11 20 opLeV0100000334 sgn|U216442 TGTTGAGCCTTTTGCAGCATGATGGGCCTCAACTTCACTTTTGAGGCTTG Experimental SGN-U579073 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157342937|emb|CAO65649.1| (e_value=1e-52) unnamed; (*ATH) AT4G22380.1 (e_value=7e-53) | Symbol: None | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628. | chr4:11812053-11812934 REVERSE | Aliases: F7K2.1; (*SWP) sp|Q5XH16|NH2L1_XENLA (e_value=7e-45) NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1; Solyc09g011420.2.1 genomic_reference:SL2.40ch09 gene_region:4751658-4754252 transcript_region:SL2.40ch09:4751658..4754252+ go_terms:GO:0005515,GO:0030515 functional_description:"50S ribosomal protein L7Ae (AHRD V1 **-- B2WJB2_PYRTR); contains Interpro domain(s) IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 " 4 4 11 20 opLeV0100000335 sgn|U221921 GCCAGCTCAATCACAACGGCGAAAGCTACAGCGACGGCGAAGGTGAGTCACCGGAGTGGGACCATCGGTT Experimental SGN-U578875 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|37983671|gb|AAR06294.1| (e_value=0) adenylosuccinate synthase [Nicotiana tabacum]; (*ATH) AT3G57610.1 (e_value=0) Symbol: None | adenylosuccinate synthetase (ADSS), identical to adenylosuccinate synthetase, chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase) (Swiss-Prot:Q96529) (Arabidopsis thaliana) | chr3:21345261-21347635 REVERSE | A... ; (*SWP) sp|Q96529|PURA_ARATH (e_value=0) Adenylosuccinate synthetase, chloroplastic OS=Arabidopsis thaliana GN=At3g57610; Solyc10g080320.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60933642-60936711 transcript_region:SL2.40ch10:60933642..60936711- go_terms:GO:0004019 functional_description:"Adenylosuccinate synthetase (AHRD V1 **** Q9FYW9_SOLLC); contains Interpro domain(s) IPR001114 Adenylosuccinate synthetase " 4 2 11 20 opLeV0100000336 sgn|U231191 GTGTTTGATTATCGGCAGAAGGTGACTAGGTCGTTTCAGTACCTTCAAGGCGATTACTACATTGCACCTG Experimental SGN-U573168 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|71834884|gb|AAZ41846.1| (e_value=2e-83) Rubisco activase 2 [Mesembryanthemum crystallinum]; (*ATH) AT1G73110.1 (e_value=5e-85) Symbol: None | ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative, similar to ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase, RA) (Oryza sativa) SWISS-PROT:P9343... ; (*SWP) sp|P10871|RCA_SPIOL (e_value=2e-34) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea; Solyc03g117850.2.1 genomic_reference:SL2.40ch03 gene_region:60921754-60930539 transcript_region:SL2.40ch03:60921754..60930539- go_terms:GO:0046863 functional_description:"Ribulose bisphosphate carboxylase/oxygenase activase (AHRD V1 **** B6T416_MAIZE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core " 2 8 4 20 opLeV0100000337 sgn|U216007 CCAGGTCTACCTTCTGGTGGAAGTGAGAAGATCTCAAAGTATAGTGCTGTTCCTGTACTGGATCTTCCAC Experimental SGN-U586526 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|147779004|emb|CAN75753.1| (e_value=4e-78) hypothetical; (*ATH) AT3G17330.2 (e_value=1e-49) |; (*SWP) sp|P59326|YTHD1_MOUSE (e_value=6e-28) YTH domain family protein 1 OS=Mus musculus GN=Ythdf1; Solyc12g099090.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64706410-64710192 transcript_region:SL2.40ch12:64706410..64710192+ functional_description:"YTH domain family 2 (Predicted) (AHRD V1 *--- B2GUU1_RAT); contains Interpro domain(s) IPR007275 YT521-B-like protein " 2 6 4 20 opLeV0100000338 sgn|U224205 ATAAGGCGACGCTCCACTAATTATTTTACTGAGATTCTTCACCGTATGAGTGATTTGATCGATGAGCGGC Experimental SGN-U568891 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|17065916|emb|CAC80883.1| (e_value=2e-111) geraniol 10-hydroxylase [Catharanthus roseus]; (*ATH) AT2G45550.1 (e_value=5e-65) | Symbol: None | cytochrome P450 family protein | chr2:18780615-18782728 REVERSE | Aliases: F17K2.8; (*SWP) sp|O23976|C76B1_HELTU (e_value=2e-87) 7-ethoxycoumarin O-deethylase OS=Helianthus tuberosus GN=CYP76B1; Solyc02g065220.2.1 genomic_reference:SL2.40ch02 gene_region:30965998-30968282 transcript_region:SL2.40ch02:30965998..30968282- go_terms:GO:0019825 functional_description:"Cytochrome P450" 2 4 4 20 opLeV0100000339 sgn|U212845 TTGCAACCCTGCATACTAGCATATGGTTTTTCTCCTCAGCTGTGCCGCAT Experimental \N \N \N \N 2 2 4 20 opLeV0100000340 sgn|U214676 TTCAGCTTGCCAGGAGAATTAGGGGCGAAAGGGCTTAAAATGTAGTAGTGATTTGAGTATATAGTGGTGG Experimental SGN-U581228 Tomato 200607#2 [50 ESTs aligned] (*GB) gi|170059756|ref|XP_001865500.1| (e_value=4e-58) histone; (*ATH) AT5G10400.1 (e_value=3e-60) Symbol: None | histone H3, identical to several histone H3 proteins, including Zea mays SP:P05203, Medicago sativa GI:166384, Encephalartos altensteinii SP:P08903, Pisum sativum SP:P02300; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 | c... ; (*SWP) sp|P69246|H32_MAIZE (e_value=2e-59) Histone H3.2 OS=Zea mays GN=H3C2; \N \N 2 8 8 20 opLeV0100000341 sgn|U240045 AACGGCAATGCTCATTTTACTCCACAGCGGACTTACCAGGTTGTGGTTGCTGCAACTCAAAGTATGGGAA Experimental SGN-U562957 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|164564740|dbj|BAF98221.1| (e_value=0) CM0216.390.nc; (*ATH) AT2G16370.1 (e_value=0) | Symbol: None | bifunctional dihydrofolate reductase-thymidylate synthase 1 / DHFR-TS (THY-1), identical to GP:289193:L08593 (SP:Q05762) | chr2:7088985-7091639 REVERSE | Aliases: F16F14.13, F16F14_13; (*SWP) sp|P51820|DRTS_SOYBN (e_value=0) Bifunctional dihydrofolate reductase-thymidylate synthase OS=Glycine max; Solyc01g109830.2.1 genomic_reference:SL2.40ch01 gene_region:88435982-88439987 transcript_region:SL2.40ch01:88435982..88439987- go_terms:GO:0009165,GO:0006231,GO:0055114 functional_description:"Thymidylate synthase (AHRD V1 ***- D8LWN8_BLAHO); contains Interpro domain(s) IPR012262 Bifunctional dihydrofolate reductase/thymidylate synthase " 2 6 8 20 opLeV0100000342 sgn|U223212 GGTAGCCAAGGTATCCCTGCAGCTATTTCTGGCCTTCTTGGAAACTGGATATTCGACTGAATTCGTAGTG Experimental SGN-U574279 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|7228160|emb|CAB77025.1| (e_value=8e-95) putative Rho GDP dissociation inhibitor [Nicotiana tabacum]; (*ATH) AT3G07880.1 (e_value=1e-47) Symbol: None | Rho GDP-dissociation inhibitor family protein, similar to SP:P52565 Rho GDP-dissociation inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens}; contains Pfam profile PF02115: RHO protein GDP dissociation inhibitor | chr3:2513977-2515... ; (*SWP) sp|Q9SFC6|GDIR_ARATH (e_value=1e-46) Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1; Solyc09g072670.2.1 genomic_reference:SL2.40ch09 gene_region:60777904-60789755 transcript_region:SL2.40ch09:60777904..60789755+ go_terms:GO:0017048,GO:0005094 functional_description:"Rho GDP dissociation inhibitor 1 (AHRD V1 **** Q705X4_MEDTR); contains Interpro domain(s) IPR000406 RHO protein GDP dissociation inhibitor " 2 4 8 20 opLeV0100000343 sgn|U215032 GTGCCGAGGAATCCGACGAACAAGACGAGGTTGAGGAGGCTCCTGAGGGT Experimental SGN-U573384 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157344202|emb|CAO69135.1| (e_value=3e-34) unnamed; (*ATH) AT5G02050.1 (e_value=7e-28) Symbol: None | mitochondrial glycoprotein family protein / MAM33 family protein, low similarity to SUAPRGA1 (Emericella nidulans) GI:6562379; contains Pfam profile PF02330: Mitochondrial glycoprotein | chr5:402984-404304 REVERSE | Aliases: T7H20.100... ; (*SWP) sp|Q8W487|YB95_ARATH (e_value=3e-25) Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795; Solyc03g079930.2.1 genomic_reference:SL2.40ch03 gene_region:45398282-45399790 transcript_region:SL2.40ch03:45398282..45399790- go_terms:GO:0005759 functional_description:"Mitochondrial glycoprotein family protein (AHRD V1 ***- D7LDS6_ARALY); contains Interpro domain(s) IPR003428 Mitochondrial glycoprotein " 2 2 8 20 opLeV0100000344 sgn|U218270 GTATCTATGTCTTCCAGCTCTGTCGGTTCACGTACATCCGATCGTCTTCCTCATTCACCTAGCACATCTA Experimental SGN-U582362 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|147773362|emb|CAN75716.1| (e_value=2e-163) hypothetical; (*ATH) AT4G00330.1 (e_value=4e-127) | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr4:142622-144523 REVERSE | Aliases: A_IG005I10.8, A_IG005I10_8, F5I10.8, F5I10_8; (*SWP) sp|O24585|CRI4_MAIZE (e_value=2e-54) Putative receptor protein kinase CRINKLY4 OS=Zea mays GN=CR4; Solyc10g012170.2.1 genomic_reference:SL2.40ch10 gene_region:4518212-4524148 transcript_region:SL2.40ch10:4518212..4524148- go_terms:GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM39_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 2 8 12 20 opLeV0100000345 sgn|U238921 AATTTAGGGATTATCAGCCCAATTATAAAATCTACAACCCAGTAATCCACGGGCCTTGATCGGCCCATAT Experimental SGN-U572373 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157338874|emb|CAO42225.1| (e_value=0) unnamed; (*ATH) AT5G52450.1 (e_value=1e-154) | Symbol: None | MATE efflux protein-related, strong similarity to unknown protein (pir::T02324); contains Pfam profile PF01554 Uncharacterized membrane protein family | chr5:21306125-21309088 REVERSE | Aliases: K24M7.20, K24M7_20; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=3e-84) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12; \N \N 2 6 12 20 opLeV0100000346 sgn|U216121 CTTGGTCTTGGTCTCCTGTATCTTGGAAAACAGGAAAGCGTTGAGGCTACAGCCGAGGTCTCGAAGACCT Experimental SGN-U569045 Tomato 200607#2 [60 ESTs aligned] (*GB) gi|18399399|ref|NP_565477.1| (e_value=0) 26S proteasome regulatory subunit S2 (RPN1) [Arabidopsis thaliana]; (*ATH) AT2G20580.1 (e_value=0) | Symbol: RPN1A | Encodes a regulatory subunit of the 26S proteosome complex that is involved in cell cycle progression during embryogenesis. | chr2:8866091-8871946 FORWARD | Aliases: F23N11.10, F23N11_10, RPN1A; (*SWP) sp|Q4FZT9|PSMD2_RAT (e_value=0) 26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus GN=Psmd2; Solyc07g053650.2.1 genomic_reference:SL2.40ch07 gene_region:59419978-59430740 transcript_region:SL2.40ch07:59419978..59430740+ go_terms:GO:0030674,GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8J3A4_CHLRE); contains Interpro domain(s) IPR016643 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit " 2 4 12 20 opLeV0100000347 sgn|U218524 CATCTGTGGGTCCGTAAAGCCTCTCATAAGGTAACACGTAAAAGAAGTTTCCCGAAAGGCAATAAGTATC Experimental SGN-U573320 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147852112|emb|CAN82265.1| (e_value=2e-31) hypothetical; (*ATH) AT5G62020.1 (e_value=2e-29) Symbol: None | heat shock factor protein, putative (HSF6) / heat shock transcription factor, putative (HTSF6), identical to heat shock transcription factor 6 (HSF6) SP: Q9SCW4 from (Arabidopsis thaliana) ;contains Pfam profile: PF00447 HSF-type DNA-... ; (*SWP) sp|Q9SCW4|HFB2A_ARATH (e_value=1e-28) Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A; \N \N 2 2 12 20 opLeV0100000348 sgn|U227127 GTAGCTTGAGGAGAAGCACTAAGCAGATTCATGTGGTATTTGGACCTACCAAGAAAGTTTCTTATTATGG Experimental SGN-U566274 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157344451|emb|CAO69834.1| (e_value=3e-90) unnamed; (*ATH) AT3G58120.1 (e_value=4e-83) | Symbol: None | bZIP transcription factor family protein, contains Pfam profile: PF00170 bZIP transcription factor ;supported by cDNA gi:15100054:gb:AF401300.1:AF401300 | chr3:21531951-21534304 REVERSE | Aliases: F9D24.30; (*SWP) sp|Q04088|POF21_ARATH (e_value=4e-18) Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21; \N \N 4 8 4 20 opLeV0100000349 sgn|U216891 GTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGACAAAGATTTGCCCTGAGAGAGG Experimental SGN-U569141 Tomato 200607#2 [47 ESTs aligned] (*GB) gi|147784261|emb|CAN61809.1| (e_value=0) hypothetical; (*ATH) AT4G02930.1 (e_value=0) | Symbol: None | elongation factor Tu, putative / EF-Tu, putative, similar to mitochondrial elongation factor Tu (Arabidopsis thaliana) gi:1149571:emb:CAA61511 | chr4:1295409-1298397 REVERSE | Aliases: T4I9.19; (*SWP) sp|Q9ZT91|EFTM_ARATH (e_value=0) Elongation factor Tu, mitochondrial OS=Arabidopsis thaliana GN=TUFA; Solyc09g073000.2.1 genomic_reference:SL2.40ch09 gene_region:61156838-61164570 transcript_region:SL2.40ch09:61156838..61164570- go_terms:GO:0003746 functional_description:"Elongation factor Tu (AHRD V1 **** B9SFP0_RICCO); contains Interpro domain(s) IPR004541 Translation elongation factor EFTu/EF1A, bacterial and organelle " 4 6 4 20 opLeV0100000350 sgn|U220359 GATGTAGCGAAGAGACATATACTGCCTTTCCTCCCCGCTAAATCACTGATGAAGCTTCGGGCAGTCTCCA Experimental SGN-U565261 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157348156|emb|CAO22866.1| (e_value=4e-39) unnamed; Solyc02g085440.2.1 genomic_reference:SL2.40ch02 gene_region:42916219-42918552 transcript_region:SL2.40ch02:42916219..42918552- functional_description:"F-box family protein (AHRD V1 ***- D7MPC5_ARALY)" 4 4 4 20 opLeV0100000351 sgn|U232439 ATTGTTGTCACAGAGCTCCTAATTCTTGTGATTATTAGGTGTGCACTGTTCCTAAAGAAAGCTGGCTGTC Experimental SGN-U578225 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|195622072|gb|ACG32866.1| (e_value=1e-94) cysteine-type; (*ATH) AT5G04250.1 (e_value=8e-96) | Symbol: None | OTU-like cysteine protease family protein, contains Pfam profile PF02338: OTU-like cysteine protease | chr5:1176014-1178919 FORWARD | Aliases: T19N18.9; Solyc04g024710.2.1 genomic_reference:SL2.40ch04 gene_region:14102169-14113772 transcript_region:SL2.40ch04:14102169..14113772+ go_terms:GO:0008234 functional_description:"Cysteine-type peptidase (AHRD V1 **** B6T6Y3_MAIZE); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain " 4 2 4 20 opLeV0100000352 sgn|U221583 CGCGGAATGATACTGAACATCTTCAGCCCCTTTCTCCAAGAGTACTGCAAAGCAAAGCAGTGCTCTTGAA Experimental SGN-U566645 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|215598344|tpg|DAA06358.1| (e_value=2e-83) TPA:; (*ATH) AT5G66200.1 (e_value=1e-80) | Symbol: None | armadillo/beta-catenin repeat family protein, contains Pfam profile: PF00514 armadillo/beta-catenin-like repeat | chr5:26470686-26473048 REVERSE | Aliases: K2A18.28, K2A18_28; Solyc02g062140.2.1 genomic_reference:SL2.40ch02 gene_region:28287621-28290137 transcript_region:SL2.40ch02:28287621..28290137- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 ***- D7MDH4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical " 4 8 8 20 opLeV0100000353 sgn|U240820 CGGCCGAAAACTGCTAGAGGGGTCCCACTGGAGCTGGTCTGGGGAAGAAGCTAGGGAAGTCTTGGAATAC Experimental SGN-U600110 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157345275|emb|CAO72003.1| (e_value=2e-83) unnamed; (*ATH) AT4G37640.1 (e_value=7e-85) Symbol: None | calcium-transporting ATPase 2, plasma membrane-type / Ca(2+)-ATPase isoform 2 (ACA2), identical to SP:O81108 Calcium-transporting ATPase 2, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2) {Arabidopsis thaliana} | chr4:1768... ; (*SWP) sp|O81108|ACA2_ARATH (e_value=5e-84) Calcium-transporting ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=ACA2; Solyc02g064680.2.1 genomic_reference:SL2.40ch02 gene_region:30333568-30339094 transcript_region:SL2.40ch02:30333568..30339094+ go_terms:GO:0016020,GO:0008152 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 ***- Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type " 4 4 8 20 opLeV0100000354 sgn|U232343 CCCATCCCAATAGTCCTCTCCTTCCTCACTAGTTCCCCATCCGATGAGCTTAACAGCATGGCCTCCGATA Experimental SGN-U594613 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|609175|emb|CAA57522.1| (e_value=1e-33) cathepsin B-like cysteine proteinase [Nicotiana rustica]; (*ATH) AT1G02305.1 (e_value=2e-29) | Symbol: None | cathepsin B-like cysteine protease, putative, similar to cathepsin B-like cysteine proteinase (Nicotiana rustica) GI:609175; contains Pfam profile PF00112: Papain family cysteine protease | chr1:455778-458124 FORWARD | Aliases: None; (*SWP) sp|P43507|CPR3_CAEEL (e_value=3e-19) Cathepsin B-like cysteine proteinase 3 OS=Caenorhabditis elegans GN=cpr-3; Solyc02g069110.2.1 genomic_reference:SL2.40ch02 gene_region:33647682-33650647 transcript_region:SL2.40ch02:33647682..33650647- go_terms:GO:0006508,GO:0050790,GO:0008234 functional_description:"Cathepsin B (AHRD V1 ***- Q1HER6_NICBE); contains Interpro domain(s) IPR015643 Peptidase C1A, cathepsin B " 4 2 8 20 opLeV0100000355 sgn|U232700 AACTTTCTCATTATACTCTTTCCCCATTAAAACCTCCGGCGCAACGTAATACGGCGTACCCACAACCCCA Experimental SGN-U564187 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|33329258|gb|AAQ10029.1| (e_value=2e-57) PEPC kinase 1b [Solanum tuberosum]; (*ATH) AT1G08650.1 (e_value=4e-43) | Symbol: None | phosphoenolpyruvate carboxylase kinase, identical to phosphoenolpyruvate carboxylase kinase (Arabidopsis thaliana) gi:6318613:gb:AAF06968; contains protein kinase domain, Pfam:PF00069 | chr1:2752159-2753706 FORWARD | Aliases: None; (*SWP) sp|A5A7I7|CDPK4_SOLTU (e_value=4e-26) Calcium-dependent protein kinases 4 OS=Solanum tuberosum GN=CDPK4; Solyc04g009910.2.1 genomic_reference:SL2.40ch04 gene_region:3230992-3232541 transcript_region:SL2.40ch04:3230992..3232541- go_terms:GO:0004689 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 **** B4FZS4_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 4 8 12 20 opLeV0100000356 sgn|U214282 GCCAACACTCTGCCTTTGCTTCAATATGACCAGCACGTCATTGTGAACAG Experimental SGN-U584829 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|18405296|ref|NP_564683.1| (e_value=1e-35) expressed protein [Arabidopsis thaliana]; (*ATH) AT1G55265.1 (e_value=1e-37) | Symbol: None | expressed protein, contains Pfam profile PF04398: Protein of unknown function, DUF538 | chr1:20620980-20621668 FORWARD | Aliases: None; Solyc05g013240.2.1 genomic_reference:SL2.40ch05 gene_region:6329770-6331897 transcript_region:SL2.40ch05:6329770..6331897+ functional_description:"Unknown Protein (AHRD V1)" 4 6 12 20 opLeV0100000357 sgn|U218376 TGGTGTGAAGATCGTGTGTATCGATCCGGCCCCTGACGGTTGTGTTCACTTTTCTGAGTTGATTCAGGCC Experimental SGN-U577586 Tomato 200607#2 [29 ESTs aligned] (*GB) gi|12229632|sp|O24146|4CL2_TOBAC (e_value=0) 4-coumarate--CoA ligase 2 (4CL 2) (4-coumaroyl-CoA synthase 2); (*ATH) AT3G21240.1 (e_value=0) Symbol: None | 4-coumarate--CoA ligase 2 / 4-coumaroyl-CoA synthase 2 (4CL2), identical to SP:Q9S725 4-coumarate--CoA ligase 2 (EC 6.2.1.12) (4CL 2) (4-coumaroyl-CoA synthase 2) {Arabidopsis thaliana} | chr3:7454282-7457385 REVERSE | Aliases: MXL8.1... ; (*SWP) sp|O24146|4CL2_TOBAC (e_value=0) 4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2; Solyc06g068650.2.1 genomic_reference:SL2.40ch06 gene_region:38947648-38951634 transcript_region:SL2.40ch06:38947648..38951634- go_terms:GO:0016207 functional_description:"4-coumarate CoA ligase (AHRD V1 **** Q0GZS1_9BORA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase " 4 4 12 20 opLeV0100000358 sgn|U218464 TTGGGATGTTGAAATTGGCCGTCTTGTCCACAGCTTGAATGGTCATAGGGATCCTGTTTACTCTGTCGCG Experimental SGN-U581683 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|115471661|ref|NP_001059429.1| (e_value=9e-133) Os07g0405100; (*ATH) AT5G67320.1 (e_value=2e-129) | Symbol: None | WD-40 repeat family protein, strong similarity to unknown protein (ref:NP_005638.1) | chr5:26874380-26878337 FORWARD | Aliases: K8K14.4, K8K14_4; (*SWP) sp|Q9BZK7|TBL1R_HUMAN (e_value=6e-107) F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1; Solyc04g078320.2.1 genomic_reference:SL2.40ch04 gene_region:60664444-60675242 transcript_region:SL2.40ch04:60664444..60675242- go_terms:GO:0003714 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7MKQ9_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region " 4 2 12 20 opLeV0100000359 sgn|U226495 GCGTTCAGTCGAGGGCTGGAGATCTCTCTTATCCTTGCTGGAAACAATCCAAACACCGGTTTATAATCTC Experimental SGN-U584255 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|4588012|gb|AAD25952.1|AF085717_1 (e_value=6e-130) putative; (*ATH) AT3G07160.1 (e_value=1e-128) | Symbol: None | glycosyl transferase family 48 protein, similar to glucan synthase GB:AAD11794 (Filobasidiella neoformans var. neoformans) | chr3:2264963-2279389 REVERSE | Aliases: T1B9.18; (*SWP) sp|Q9SFU6|CALS9_ARATH (e_value=9e-128) Callose synthase 9 OS=Arabidopsis thaliana GN=CALS9; Solyc01g006350.2.1 genomic_reference:SL2.40ch01 gene_region:934429-952385 transcript_region:SL2.40ch01:934429..952385- go_terms:GO:0016757 functional_description:"Glucan synthase like 7 (AHRD V1 ***- D8TE42_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 " 1 6 13 20 opLeV0100000360 sgn|U243079 CTTCGGGGGAGCCTTTTACCCCAGGGAAAAGCCCCAACGGGGGGACCAAACCCCTCCCAAAAAAAAGGGG Experimental SGN-U602299 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|78096654|dbj|BAE46985.1| (e_value=4e-33) mitogen-activated protein kinase [Nicotiana tabacum]; (*ATH) AT4G01370.1 (e_value=2e-31) Symbol: None | mitogen-activated protein kinase, putative / MAPK, putative (MPK4), identical to mitogen-activated protein kinase homolog (AtMPK4)(Arabidopsis thaliana) SWISS-PROT:Q39024; PMID:12119167 | chr4:567095-569085 FORWARD | Aliases: F2N1.1, ... ; (*SWP) sp|Q40353|MMK2_MEDSA (e_value=8e-32) Mitogen-activated protein kinase homolog MMK2 OS=Medicago sativa GN=MMK2; \N \N 1 4 13 20 opLeV0100000361 sgn|U223767 TGTCTTCTGAGAACCACCGGAGCTCTGTTCTTTCCATAAATTTGTTCCGGCGGAGGATTCAACAGAACCG Experimental SGN-U569925 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157338197|emb|CAO39241.1| (e_value=8e-59) unnamed; (*ATH) AT2G20770.1 (e_value=2e-51) | Symbol: None | lanthionine synthetase C-like family protein, contains Pfam domain, PF05147: Lanthionine synthetase C-like protein | chr2:8952399-8955361 FORWARD | Aliases: F5H14.26, F5H14_26; (*SWP) sp|Q9JJK2|LANC2_MOUSE (e_value=2e-13) LanC-like protein 2 OS=Mus musculus GN=Lancl2; Solyc07g063310.2.1 genomic_reference:SL2.40ch07 gene_region:63028670-63031331 transcript_region:SL2.40ch07:63028670..63031331+ go_terms:GO:0010427 functional_description:"LanC-like protein 2 (AHRD V1 ***- B6TCV9_MAIZE); contains Interpro domain(s) IPR020464 LanC-like protein, eukaryotic " 1 2 13 20 opLeV0100000362 sgn|U226460 TGTGAGCCTGGAAGTCTAGGCCAGACACACAACAGAGTTCGATGCCTGAAATGAGATTCTACGAATACAA Experimental SGN-U571741 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157339599|emb|CAO44140.1| (e_value=5e-13) unnamed; (*ATH) AT2G20540.1 (e_value=4e-12) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains INTERPRO:IPR002885 PPR repeats | chr2:8851241-8852845 FORWARD | Aliases: T13C7.13, T13C7_13; \N \N 1 8 17 20 opLeV0100000363 sgn|U212684 TGCTTTGATTGGCAACGGATTGGCGATGAATTGGTTGATATGACTGAAGGAACTGGACTCACCTTGCCTA Experimental SGN-U579853 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|85068594|gb|ABC69377.1| (e_value=1e-128) CYP81B2v2; (*ATH) AT4G37400.1 (e_value=3e-80) | Symbol: None | cytochrome P450 family protein, similar to cytochrome P450 monooxygenase CYP91A2, Arabidopsis thaliana, D78607 | chr4:17584045-17586354 FORWARD | Aliases: F6G17.50, F6G17_50; (*SWP) sp|Q9FG65|C81D1_ARATH (e_value=1e-70) Cytochrome P450 81D1 OS=Arabidopsis thaliana GN=CYP81D1; Solyc04g078290.2.1 genomic_reference:SL2.40ch04 gene_region:60642301-60645358 transcript_region:SL2.40ch04:60642301..60645358- go_terms:GO:0019825 functional_description:"Cytochrome P450" 1 6 17 20 opLeV0100000364 sgn|U217780 GGTGTTGTGGGCAGAACAGGAAGTGGTAAATCAACCCTCATTCAGGCTCTTTTCCGTATTATAGAACCCC Experimental SGN-U576896 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|157344676|emb|CAO70431.1| (e_value=0) unnamed; (*ATH) AT3G60160.1 (e_value=0) | Symbol: None | ABC transporter family protein, similar to ATP-binding cassette transporter MRP8 GI:18031899 from (Arabidopsis thaliana) | chr3:22234778-22240170 REVERSE | Aliases: T2O9.140; (*SWP) sp|Q9M1C7|MRP9_ARATH (e_value=0) Multidrug resistance-associated protein 9 OS=Arabidopsis thaliana GN=MRP9; Solyc10g024420.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:13997548-14004636 transcript_region:SL2.40ch10:13997548..14004636- go_terms:GO:0015431 functional_description:"ABC transporter C family member 9 (AHRD V1 **-- AB9C_ARATH); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region " 1 4 17 20 opLeV0100000365 sgn|U220682 GCTGTATTGGCAAATGAGCTTGCTTTGTGGTTGTCGGAATCCGATAACGATGGTCGTGAACGGTGTTTGA Experimental SGN-U585443 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157348116|emb|CAO22826.1| (e_value=6e-74) unnamed; (*ATH) AT2G18245.1 (e_value=3e-60) | Symbol: None | expressed protein | chr2:7944369-7946680 FORWARD | Aliases: None; Solyc02g085080.2.1 genomic_reference:SL2.40ch02 gene_region:42664123-42666591 transcript_region:SL2.40ch02:42664123..42666591+ functional_description:"Transmembrane protein 53 (AHRD V1 *-*- B5X6E4_SALSA); contains Interpro domain(s) IPR008547 Protein of unknown function DUF829, transmembrane 53 " 1 2 17 20 opLeV0100000366 sgn|U225501 CCGAATAGTACAAGACACAAAGAGTTTGTTGGAATTAAGATGTGAAGTTCCTCTGGAAGCCCACATGTGG Experimental \N \N \N \N 1 8 1 19 opLeV0100000367 sgn|U215883 ACACACTAGTTCTTTCTCTTTTTCGTTTGTTTGTCTCGTGTTTTTTCAGATGATATCATCTGTCGGGTCG Experimental SGN-U566163 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|215490181|dbj|BAG86624.1| (e_value=7e-139) type; (*ATH) AT5G18900.1 (e_value=6e-126) Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to prolyl 4-hydroxylase, alpha subunit, from Rattus norvegicus (GI:474940), Mus musculus (SP:Q60715), Homo sapiens (GI:18073925); contains PF03171 2OG-Fe(II) oxygenase super... ; (*SWP) sp|P16924|P4HA1_CHICK (e_value=5e-28) Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1; Solyc01g080530.2.1 genomic_reference:SL2.40ch01 gene_region:72279435-72287944 transcript_region:SL2.40ch01:72279435..72287944+ go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha subunit-like protein (AHRD V1 ***- Q8LAN3_ARATH); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit " 1 6 1 19 opLeV0100000368 sgn|U216711 GGGGATGGAGAAATGTGAAGACAGAGATGAAGTTTGTTTAAATAGAAGGATGGTAGCTGAGGCTCACTTG Experimental SGN-U585057 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|23466403|tpg|DAA00292.1| (e_value=1e-16) TPA: putative phytosulfokine peptide precursor [Solanum tuberosum]; Solyc10g083580.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:62691048-62692695 transcript_region:SL2.40ch10:62691048..62692695+ go_terms:GO:0005576 functional_description:"Phytosulfokines 5 (AHRD V1 *-*- PSK5_ORYSJ); contains Interpro domain(s) IPR009438 Phytosulfokine " 1 4 1 19 opLeV0100000369 sgn|U213555 TATGGCGGAGTATTGTCTGGAGGAGCAGTTAGGGAGAGGATCGTCCGTGCTTTCTTGGTGGAAGAGCAAA Experimental SGN-U591598 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118483357|gb|ABK93580.1| (e_value=6e-47) unknown; (*ATH) AT1G26880.1 (e_value=3e-47) | Symbol: None | 60S ribosomal protein L34 (RPL34A), identical to GB:Q42351, location of EST 105E2T7, gb:T22624 | chr1:9315370-9316716 REVERSE | Aliases: T2P11.7, T2P11_7; (*SWP) sp|P40590|RL34_PEA (e_value=8e-48) 60S ribosomal protein L34 OS=Pisum sativum GN=RPL34; Solyc06g069860.2.1 genomic_reference:SL2.40ch06 gene_region:39888894-39890746 transcript_region:SL2.40ch06:39888894..39890746+ go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L34 (AHRD V1 ***- B6UH15_MAIZE); contains Interpro domain(s) IPR008195 Ribosomal protein L34e " 1 2 1 19 opLeV0100000370 sgn|U214032 TAATAATAGTGTAGACCCAGATGACTGCTGCCCATCCCCAGCCAACTCCCTTGATCCTGGCGAATTCCCA Experimental SGN-U581542 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|64460298|gb|AAR32129.2| (e_value=5e-96) proton P-ATPase [Nicotiana tabacum]; (*ATH) AT1G80660.1 (e_value=3e-81) Symbol: None | ATPase 9, plasma membrane-type, putative / proton pump 9, putative / proton-exporting ATPase, putative, strong similarity to SP:Q42556 ATPase 9, plasma membrane-type (EC 3.6.3.6) (Proton pump 9) {Arabidopsis thaliana}; contains InterP... ; (*SWP) sp|Q03194|PMA4_NICPL (e_value=4e-82) Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4; Solyc00g257110.2.1 genomic_reference:SL2.40ch00 gene_region:20272521-20276002 transcript_region:SL2.40ch00:20272521..20276002- go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux " 3 8 13 20 opLeV0100000371 sgn|U222500 GTGTACAGAACCGGATCTTGTGAAAAGCATAAATCCTGAGTGGAACAAGATGTTTACGTTCATCGTGCCA Experimental SGN-U585669 Tomato 200607#2 [10 ESTs aligned] Solyc01g005420.2.1 genomic_reference:SL2.40ch01 gene_region:293530-294356 transcript_region:SL2.40ch01:293530..294356- functional_description:"SRC2-like protein (AHRD V1 ***- A4K8J5_CAPAN); contains Interpro domain(s) IPR018029 C2 membrane targeting protein " 3 6 13 20 opLeV0100000372 sgn|U215211 ATCTCCGAGAACTCACCGGCGAGGTAACGACGAGAAAAATCGAAAGGATATGAGGTTATCGGAGAAATCC Experimental SGN-U579032 Tomato 200607#2 [28 ESTs aligned] (*GB) gi|82623367|gb|ABB87098.1| (e_value=7e-78) hypothetical; (*ATH) AT2G27830.1 (e_value=2e-29) | Symbol: None | expressed protein | chr2:11867295-11868552 FORWARD | Aliases: F15K20.7, F15K20_7; Solyc01g009430.2.1 genomic_reference:SL2.40ch01 gene_region:3634636-3636306 transcript_region:SL2.40ch01:3634636..3636306- functional_description:"Os02g0448600 protein (Fragment) (AHRD V1 *--- Q0E1G8_ORYSJ)" 3 4 13 20 opLeV0100000373 sgn|U224505 ATATCTCCTCGTGATTACATTGACTCTCTGCGCACTCGCAGTGCTTGAGATCAAGTGGTCCGGCATTGCC Experimental SGN-U564360 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|27372782|gb|AAO03579.1| (e_value=0) cellulose synthase-like protein D4 [Populus tremuloides]; (*ATH) AT3G03050.1 (e_value=0) Symbol: None | cellulose synthase family protein (CslD3), similar to cellulose synthase catalytic subunit gi:2827143 from (Arabidopsis thaliana), cellulose synthase-7 (gi:9622886) from Zea mays; contains Pfam profile PF03552: Cellulose synthase | ch... ; (*SWP) sp|Q9M9M4|CSLD3_ARATH (e_value=0) Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3; Solyc08g076320.2.1 genomic_reference:SL2.40ch08 gene_region:57452825-57457247 transcript_region:SL2.40ch08:57452825..57457247- go_terms:GO:0016759 functional_description:"Cellulose synthase-like protein (AHRD V1 **** B9IPJ4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase " 3 8 17 20 opLeV0100000374 sgn|U223286 AATTAGGATCAACATTCCTCCATCGATGATATTTTCACCTAGACGATCTCCAGGAGCAGTGGCAACAGGG Experimental SGN-U576183 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157355684|emb|CAO49501.1| (e_value=2e-49) unnamed; (*ATH) AT5G52790.1 (e_value=2e-38) | Symbol: None | CBS domain-containing protein-related, contains Pfam profile PF01595: Domain of unknown function, weak hit to PF00571: CBS domain | chr5:21408943-21411585 REVERSE | Aliases: F6N7.28, F6N7_28; (*SWP) sp|Q9USJ3|YJ23_SCHPO (e_value=3e-13) Uncharacterized protein C4B3.03c OS=Schizosaccharomyces pombe GN=SPCC4B3.03c; Solyc03g007570.2.1 genomic_reference:SL2.40ch03 gene_region:2124725-2127909 transcript_region:SL2.40ch03:2124725..2127909- go_terms:GO:0005515 functional_description:"Magnesium and cobalt efflux protein corC (AHRD V1 *--- CORC_SALTY); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 " 3 6 17 20 opLeV0100000375 sgn|U227512 TGCTTCGGGAGCTGAATTCATTAATATCCGGTGTACAAGCTTCCGCCGGAAACGGAACTGATGATGCAGT Experimental SGN-U574129 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|45421752|emb|CAF74711.1| (e_value=1e-112) MYC transcription factor [Solanum tuberosum]; (*ATH) AT1G32640.1 (e_value=2e-63) | Symbol: None | basic helix-loop-helix (bHLH) protein (RAP-1), identical to bHLH protein GB:CAA67885 GI:1465368 from (Arabidopsis thaliana) | chr1:11798795-11800968 REVERSE | Aliases: F6N18.4, F6N18_4; (*SWP) sp|Q39204|RAP1_ARATH (e_value=1e-62) Transcription factor AtMYC2 OS=Arabidopsis thaliana GN=BHLH; Solyc08g005050.2.1 genomic_reference:SL2.40ch08 gene_region:33228-35425 transcript_region:SL2.40ch08:33228..35425- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH " 3 4 17 20 opLeV0100000376 sgn|U230570 TAAACAGCAGCAGCCAGCAATGTCGACGGACAAACTTATAGAAAACGCGCCGGCGTCGGCAATGTCATCG Experimental SGN-U571730 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|124359148|gb|ABN05676.1| (e_value=2e-44) Phospholipase; (*ATH) AT3G05630.1 (e_value=3e-46) Symbol: None | phospholipase D, putative (PLDP2), identical to SP:Q9M9W8 Phospholipase D p2 (EC 3.1.4.4) (AtPLDp2) (Phospholipase D2 PHOX and PX containing domain) (Phospholipase D zeta 2) (PLDzeta2) {Arabidopsis thaliana}; similar to phospholipase ... ; (*SWP) sp|Q9M9W8|PLDP2_ARATH (e_value=2e-45) Phospholipase D p2 OS=Arabidopsis thaliana GN=PLDP2; Solyc01g100020.2.1 genomic_reference:SL2.40ch01 gene_region:81857864-81869067 transcript_region:SL2.40ch01:81857864..81869067+ go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** A3KH17_ARATH); contains Interpro domain(s) IPR016555 Phospholipase D, eukaryota " 3 2 17 20 opLeV0100000377 sgn|U213516 GCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTC Experimental SGN-U590952 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|60498689|dbj|BAD90699.1| (e_value=1e-140) plasma membrane intrinsic protein 2;3 [Mimosa pudica]; (*ATH) AT3G53420.1 (e_value=3e-134) | Symbol: None | plasma membrane intrinsic protein 2A (PIP2A) / aquaporin PIP2.1 (PIP2.1), identical to plasma membrane intrinsic protein 2A SP: P43286 from (Arabidopsis thaliana) | chr3:19814660-19816691 REVERSE | Aliases: F4P12.120; (*SWP) sp|P43286|PIP21_ARATH (e_value=2e-133) Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1; Solyc09g007770.2.1 genomic_reference:SL2.40ch09 gene_region:1300967-1302708 transcript_region:SL2.40ch09:1300967..1302708+ go_terms:GO:0015250 functional_description:"Aquaporin 2 (AHRD V1 ***- O65357_SAMSA); contains Interpro domain(s) IPR012269 Aquaporin " 3 8 1 19 opLeV0100000378 sgn|U220802 GAGGCACCTTTGAGGTCTTATGACCCCAACTTGATTCAAGACCCAACTGTTTACAGATTGAATGAGGCTG Experimental SGN-U563823 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|217074082|gb|ACJ85401.1| (e_value=4e-61) unknown; (*ATH) AT3G23490.1 (e_value=3e-57) | Symbol: None | cyanate lyase family, contains Pfam profile: PF02560 cyanate lyase C-terminal domain | chr3:8423042-8424659 REVERSE | Aliases: MEE5.3; (*SWP) sp|O22683|CYNS_ARATH (e_value=2e-56) Cyanate hydratase OS=Arabidopsis thaliana GN=CYN; Solyc09g090430.2.1 genomic_reference:SL2.40ch09 gene_region:65298327-65302769 transcript_region:SL2.40ch09:65298327..65302769- go_terms:GO:0008152,GO:0003677,GO:0009439 functional_description:"Cyanate hydratase (AHRD V1 ***- B6TTW1_MAIZE); contains Interpro domain(s) IPR008076 Cyanase " 3 6 1 19 opLeV0100000379 sgn|U227870 AAAATGGTGAGTTTAGGATTTTGCAGGTGGCGGATATGCACTACGGAGATGGAAAAACGACGCCGTGTGA Experimental SGN-U568888 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|157349209|emb|CAO24355.1| (e_value=3e-164) unnamed; (*ATH) AT5G63140.1 (e_value=8e-138) | Symbol: None | calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase | chr5:25345391-25347025 FORWARD | Aliases: MDC12.10, MDC12_10; (*SWP) sp|Q05924|DCR2_YEAST (e_value=4e-43) Phosphatase DCR2 OS=Saccharomyces cerevisiae GN=DCR2; Solyc11g066290.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49099350-49102726 transcript_region:SL2.40ch11:49099350..49102726- go_terms:GO:0009401,GO:0016787 functional_description:"Icc family phosphohydrolase (AHRD V1 **-- C6I6S4_9BACE); contains Interpro domain(s) IPR011230 Phosphoesterase At2g46880 " 3 4 1 19 opLeV0100000380 sgn|U234576 TATAGCTGAAAATAAATGACCCCAAAAGGCAAAAGTCCCGCCATTGCCATTTGGGTTATAACCCCCCCGT Experimental SGN-U590615 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157339085|emb|CAO42436.1| (e_value=2e-37) unnamed; (*ATH) AT1G14670.1 (e_value=2e-38) | Symbol: None | endomembrane protein 70, putative, similar to endomembrane protein emp70 precursor isolog GB:AAF67014 GI:7677068 (Homo sapiens) | chr1:5037607-5040523 FORWARD | Aliases: F10B6.3, F10B6_3; (*SWP) sp|Q54ZW0|PHG1B_DICDI (e_value=2e-21) Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b; Solyc06g048940.2.1 genomic_reference:SL2.40ch06 gene_region:28496228-28500434 transcript_region:SL2.40ch06:28496228..28500434+ go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 1 (AHRD V1 **** B6TZ24_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) " 3 2 1 19 opLeV0100000381 sgn|U232813 GCCGGAGCCGCGGGATTTCAAAGCTATGTTGAAGAAATTATCACATGAAC Experimental SGN-U576790 Tomato 200607#2 [26 ESTs aligned] (*GB) gi|148906930|gb|ABR16610.1| (e_value=2e-46) unknown; (*ATH) AT4G36090.2 (e_value=5e-35) Symbol: None | expressed protein, similar to hypothetical protein [Arabidopsis thaliana] (TAIR:At1g48980.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP51882.1); contains InterPro domain 2OG-Fe(II) oxygenase superfami... ; Solyc01g104130.2.1 genomic_reference:SL2.40ch01 gene_region:84359045-84362365 transcript_region:SL2.40ch01:84359045..84362365+ go_terms:GO:0016491 functional_description:"Oxidoreductase 2OG-Fe(II) oxygenase family protein-like (AHRD V1 *--- Q5VPG6_ORYSJ); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase " 1 4 14 20 opLeV0100000382 sgn|U219139 CGCGTCTTCAAGGAGACGATAACACTTTGGTGCTAGCAGGAAAAACCAGCTCCATGAACAAGACGCAATA Experimental SGN-U586582 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157345272|emb|CAO72000.1| (e_value=3e-88) unnamed; (*ATH) AT5G67470.1 (e_value=6e-70) | Symbol: None | formin homology 2 domain-containing protein / FH2 domain-containing protein, contains formin homology 2 domain, Pfam:PF02181 | chr5:26944061-26947686 FORWARD | Aliases: K9I9.3, K9I9_3; (*SWP) sp|Q10Q99|FH8_ORYSJ (e_value=1e-71) Formin-like protein 8 OS=Oryza sativa subsp. japonica GN=FH8; Solyc02g092470.2.1 genomic_reference:SL2.40ch02 gene_region:48091589-48096584 transcript_region:SL2.40ch02:48091589..48096584- go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 " 1 2 14 20 opLeV0100000383 sgn|U215154 TCCAAAAATGAGGGTAGCACCTATGAAATCCTCGCAGCCCATATTTGGCGATGCACGTGCAAGGCACGTG Experimental SGN-U562651 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|40644084|emb|CAE46933.1| (e_value=0) hydroxycinnamoyl CoA quinate transferase [Lycopersicon esculentum]; (*ATH) AT5G48930.1 (e_value=3e-147) Symbol: None | transferase family protein, similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (GI:3288180, GI:2239091); contains Pfam profile PF02458 transferase family | chr5:19853525-19855371 REVERSE | Aliases... ; (*SWP) sp|O23917|HCBT2_DIACA (e_value=2e-89) Anthranilate N-benzoyltransferase protein 2 OS=Dianthus caryophyllus GN=HCBT2; Solyc07g005760.2.1 genomic_reference:SL2.40ch07 gene_region:607977-611742 transcript_region:SL2.40ch07:607977..611742- go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase (AHRD V1 **-* B2Z6Q6_POPTR); contains Interpro domain(s) IPR003480 Transferase " 1 8 18 20 opLeV0100000384 sgn|U222251 TGTGGGACAGAAGCAGAGAAGGACCGCTCTCAAGTTAAACAGCAACATGGCCAGTGCATGGTTGCCAAGT Experimental SGN-U566587 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|26000756|gb|AAN75467.1| (e_value=2e-140) mitogen-activated protein kinase [Lycopersicon esculentum]; (*ATH) AT3G14720.1 (e_value=2e-115) | Symbol: None | mitogen-activated protein kinase, putative / MAPK, putative (MPK19), identical to mitogen-activated protein kinase (MAPK)(AtMPK19), PMID:12119167; | chr3:4946192-4949049 FORWARD | Aliases: MIE1.22; (*SWP) sp|Q9LUC3|MPK19_ARATH (e_value=2e-114) Mitogen-activated protein kinase 19 OS=Arabidopsis thaliana GN=MPK19; Solyc07g062080.2.1 genomic_reference:SL2.40ch07 gene_region:62129987-62135063 transcript_region:SL2.40ch07:62129987..62135063+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 18 (AHRD V1 **** D7KKI7_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 1 6 18 20 opLeV0100000385 sgn|U212592 GGCACAAATTCTTGGGATGTCCAATGCCTTGTGGCATTCAGATAACAAGG Experimental SGN-U580314 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|1706319|sp|P54772|DCHS_SOLLC (e_value=2e-137) RecName:; (*ATH) AT1G43710.1 (e_value=5e-91) Symbol: EMB1075 | serine decarboxylase, identical to serine decarboxylase (Arabidopsis thaliana) GI:15011302; contains Pfam profile PF00282: Pyridoxal-dependent decarboxylase conserved domain | chr1:16488760-16490824 REVERSE | Aliases: F2J6.7, F2J6_... ; (*SWP) sp|P54772|DCHS_SOLLC (e_value=1e-138) Histidine decarboxylase OS=Solanum lycopersicum GN=HDC; Solyc08g066260.2.1 genomic_reference:SL2.40ch08 gene_region:51971872-51974217 transcript_region:SL2.40ch08:51971872..51974217+ go_terms:GO:0030170,GO:0019752 functional_description:"Histidine decarboxylase (AHRD V1 ***- Q9MA74_ARATH); contains Interpro domain(s) IPR002129 Pyridoxal phosphate-dependent decarboxylase " 1 4 18 20 opLeV0100000386 sgn|U221861 CGGACGATGTGGACAGGGCGGCGGAGGAATTTGCTTCGAAGCTGCCGGAAGGTGGAAAACTTAGAGGCAT Experimental SGN-U585123 Tomato 200607#2 [13 ESTs aligned] Solyc04g074770.2.1 genomic_reference:SL2.40ch04 gene_region:58285246-58286944 transcript_region:SL2.40ch04:58285246..58286944- functional_description:"Unknown Protein (AHRD V1)" 1 2 18 20 opLeV0100000387 sgn|U214645 TGTGAATGTTATATCCACTCCTGTGTTGGACAGGGAGGGCAAGTCACTCAAGATAAACGAGGAGTACGTG Experimental SGN-U585465 Tomato 200607#2 [32 ESTs aligned] (*GB) gi|161702913|gb|ABX76297.1| (e_value=6e-36) stigma; (*ATH) AT1G17860.1 (e_value=1e-14) Symbol: None | trypsin and protease inhibitor family protein / Kunitz family protein, similar to LeMir (miraculin homolog) GI:2654440 from (Lycopersicon esculentum), tumor-related protein (Nicotiana tabacum) GI:1762933; contains Pfam profile PF00197... ; (*SWP) sp|P32765|ASP_THECC (e_value=6e-17) 21 kDa seed protein OS=Theobroma cacao GN=ASP; Solyc03g098710.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:54435945-54436619 transcript_region:SL2.40ch03:54435945..54436619- go_terms:GO:0004867,GO:0015066 functional_description:"Kunitz-type proteinase inhibitor A4 (Fragment) (AHRD V1 **** C5IWR3_SOLBR); contains Interpro domain(s) IPR011065 Kunitz inhibitor ST1-like " 1 8 2 19 opLeV0100000388 sgn|U222417 AACCTACCTAGCCTTTTACGAGCAAAGCAGACGAAGATCACTAAGTTTCCTCGAATGTAAGCTGTTTAAC Experimental SGN-U566338 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157335948|emb|CAO61778.1| (e_value=1e-136) unnamed; (*ATH) AT5G65210.2 (e_value=3e-116) | Symbol: None | bZIP family transcription factor (TGA1), identical to transcription factor (TGA1) GI:16550 from (Arabidopsis thaliana) | chr5:26075771-26078278 FORWARD | Aliases: None; (*SWP) sp|Q39237|TGA1_ARATH (e_value=3e-115) Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1; \N \N 1 6 2 19 opLeV0100000389 sgn|U225299 TGAACCATTTTTCTAAATACTCAAAAGGCACGCTTAATAGTCCCTGAGGTGATGCTCGAGCGCTTCAATG Experimental SGN-U580172 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|118489758|gb|ABK96679.1| (e_value=8e-41) unknown; (*ATH) AT4G27290.1 (e_value=5e-40) Symbol: None | S-locus protein kinase, putative, similar to S-receptor kinase gi:392557:gb:AAA62232; contains Pfam domains PF00954: S-locus glycoprotein family, PF00069: Protein kinase domain and PF01453: Lectin (probable mannose binding) | chr4:136... ; (*SWP) sp|O65472|CRK12_ARATH (e_value=9e-26) Putative cysteine-rich receptor-like protein kinase 12 OS=Arabidopsis thaliana GN=CRK12; Solyc04g077270.2.1 genomic_reference:SL2.40ch04 gene_region:59836299-59839484 transcript_region:SL2.40ch04:59836299..59839484- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 1 4 2 19 opLeV0100000390 sgn|U237177 GAGTAGGGTTCAACAAATTACTGGTGCCATTACTAGTATGCAACGGAGATCACGGAGTGTTTTACCACCA Experimental SGN-U573217 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157337426|emb|CAO21772.1| (e_value=6e-126) unnamed; (*ATH) AT5G60170.1 (e_value=3e-118) Symbol: None | RNA recognition motif (RRM)-containing protein, low similarity to transcriptional repressor Not4-Np (Homo sapiens) GI:6856207; contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) | chr5:24245715-24250095 FORWA... ; (*SWP) sp|Q09818|YAC4_SCHPO (e_value=5e-53) Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharomyces pombe GN=SPAC16C9.04c; Solyc11g072590.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52841938-52851444 transcript_region:SL2.40ch11:52841938..52851444+ go_terms:GO:0003676,GO:0000166 functional_description:"CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT); contains Interpro domain(s) IPR003954 RNA recognition, region 1 " 1 2 2 19 opLeV0100000391 sgn|U215768 AATACACCTAGGTTATAAAAACACAACAACGAAAGCTATTGACTTGACGAGGGGTTGGCGCTGCCCCTGT Experimental SGN-U585458 Tomato 200607#2 [35 ESTs aligned] (*GB) gi|157336737|emb|CAO71422.1| (e_value=0) unnamed; (*ATH) AT4G14350.2 (e_value=0) | Symbol: None | protein kinase family protein, contains similarity to Swiss-Prot:O13310 serine/threonine-protein kinase orb6 (Schizosaccharomyces pombe) | chr4:8256082-8260571 REVERSE | Aliases: None; (*SWP) sp|Q2LZZ7|ST38L_DROPS (e_value=2e-117) Serine/threonine-protein kinase 38-like OS=Drosophila pseudoobscura GN=trc; Solyc09g090200.2.1 genomic_reference:SL2.40ch09 gene_region:65106209-65114248 transcript_region:SL2.40ch09:65106209..65114248+ go_terms:GO:0004711 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 **** B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 3 8 14 20 opLeV0100000392 sgn|U231212 CAAAGGATCTTTTCACACAGGTTCAAGAAGCTGCCAGTGGAAATGTTTTCGTCCAGATGCCTGATGTGTG Experimental SGN-U565274 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|20197768|gb|AAM15237.1| (e_value=0) putative; (*ATH) AT2G06210.2 (e_value=0) | Symbol: None | phosphoprotein-related, low similarity to phosphoprotein from Mus musculus GI:1236239; contains Pfam profile PF00515 TPR Domain | chr2:2428900-2436684 REVERSE | Aliases: None; (*SWP) sp|Q6PD62|CTR9_HUMAN (e_value=4e-62) RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens GN=CTR9; Solyc07g041550.2.1 genomic_reference:SL2.40ch07 gene_region:50758723-50763091 transcript_region:SL2.40ch07:50758723..50763091+ go_terms:GO:0005488 functional_description:"RNA polymerase-associated protein Ctr9 homolog (AHRD V1 **-- A3KDM3_DANRE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical " 3 4 14 20 opLeV0100000393 sgn|U224968 GGAGTTGCTGCAAATTCAGGGGTTTGTTGTGGTGGGAAGAGAAAGAACGAAAAGCCCTATAAAGGGATTC Experimental SGN-U580406 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|152032350|gb|AAZ74793.2| (e_value=2e-46) drought; (*ATH) AT4G36900.1 (e_value=2e-42) Symbol: RAP2.10 | encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.10). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.1. | chr4:17388811-17389834 FORWARD ... ; (*SWP) sp|Q9SW63|RA210_ARATH (e_value=2e-41) Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10; \N \N 3 2 14 20 opLeV0100000394 sgn|U225070 ATTTTCGTACCGGCATTTCGACAAACATGTAGAGCAATTACTCTATCTCCAGGTTCTGCAACTTTTACAA Experimental SGN-U568048 Tomato 200607#2 [2 ESTs aligned] Solyc01g111570.2.1 genomic_reference:SL2.40ch01 gene_region:89560023-89563887 transcript_region:SL2.40ch01:89560023..89563887+ go_terms:GO:0006950,GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 3 8 18 20 opLeV0100000395 sgn|U215702 AAATGTCAACAACCCCACCTTCTCAAATCGCTGACATCATCAATCTCCCCACCCAACTCGACCAACCGGT Experimental SGN-U577154 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|110622992|emb|CAJ55406.1| (e_value=4e-125) ADP-sugar; (*ATH) AT4G11980.1 (e_value=8e-91) Symbol: ATNUDT14 | MutT/nudix family protein, low similarity to SP:P54570 ADP-ribose pyrophosphatase (EC 3.6.1.13) {Bacillus subtilis}; contains Pfam profile PF00293: NUDIX domain | chr4:7183644-7185568 REVERSE | Aliases: F16J13.50, F16J13_50, ATNUD... ; (*SWP) sp|Q9SZ63|NUD14_ARATH (e_value=8e-90) Nudix hydrolase 14, mitochondrial OS=Arabidopsis thaliana GN=NUDT14; Solyc08g079820.2.1 genomic_reference:SL2.40ch08 gene_region:60437849-60441440 transcript_region:SL2.40ch08:60437849..60441440+ go_terms:GO:0080042,GO:0080041 functional_description:"ADP-ribose pyrophosphatase (AHRD V1 *-** B2GB88_LACF3); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain " 3 6 18 20 opLeV0100000396 sgn|U219173 GCTGAGGTTACTTCATCCTCTGATTCTGTAACTGATTTAGAGTCGGCGGCGAGTGTGGTGAGGAAATTCT Experimental SGN-U594955 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147794044|emb|CAN71166.1| (e_value=4e-31) hypothetical; (*ATH) AT1G71480.1 (e_value=4e-43) | Symbol: None | nuclear transport factor 2 (NTF2) family protein, contains Pfam domain, PF02136: Nuclear transport factor 2 (NTF2) domain | chr1:26935602-26936975 FORWARD | Aliases: F26A9.14; Solyc11g042620.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:32758095-32768631 transcript_region:SL2.40ch11:32758095..32768631+ functional_description:"Nuclear transport factor 2 (NTF2)-like protein (AHRD V1 ***- Q67TV5_ORYSJ); contains Interpro domain(s) IPR009959 Protein of unknown function DUF1486 " 3 4 18 20 opLeV0100000397 sgn|U242423 AAACTGTGAACCAATAGCCCCCGGGATCATGAGTAGGAGGGGATGGATGTGCATAGTCTTCGCGATCTCA Experimental SGN-U576082 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|116804319|gb|ABK27327.1| (e_value=2e-62) vacuolar; (*ATH) AT5G47560.1 (e_value=4e-62) | Symbol: ATSDAT | Encodes a tonoplast malate/fumarate transporter. | chr5:19304595-19307691 REVERSE | Aliases: MNJ7.15, MNJ7_15, ATTDT, ATSDAT, TONOPLAST DICARBOXYLATE TRANSPORTER; (*SWP) sp|Q8LG88|TDT_ARATH (e_value=4e-61) Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT; Solyc11g012360.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5208388-5212579 transcript_region:SL2.40ch11:5208388..5212579+ go_terms:GO:0016020 functional_description:"Sodium-dependent dicarboxylate transporter (AHRD V1 ***- O35055_RAT); contains Interpro domain(s) IPR001898 Sodium/sulphate symporter " 3 2 18 20 opLeV0100000398 sgn|U214927 CATCGTCGAAGCTTGAGGAAAAGCTGCACAAATGGGAAAAGGAACAGGAA Experimental SGN-U578821 Tomato 200607#2 [43 ESTs aligned] (*GB) gi|217070940|gb|ACJ83830.1| (e_value=2e-45) unknown; (*ATH) AT3G16080.1 (e_value=2e-45) | Symbol: None | 60S ribosomal protein L37 (RPL37C), similar to ribosomal protein L37 GB:BAA04888 from (Homo sapiens) | chr3:5454824-5455933 FORWARD | Aliases: MSL1.12; (*SWP) sp|Q8LEM8|RL373_ARATH (e_value=1e-44) 60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C; Solyc08g068180.2.1 genomic_reference:SL2.40ch08 gene_region:54505411-54508853 transcript_region:SL2.40ch08:54505411..54508853+ go_terms:GO:0005840 functional_description:"Ribosomal protein L37 (AHRD V1 ***- B9RS60_RICCO); contains Interpro domain(s) IPR001569 Ribosomal protein L37e " 3 8 2 19 opLeV0100000399 sgn|U218404 GTCTTCGATCAGAGGAATGGCAAGAAGTTGCAGACAGAGTGTCACGGGGGTCCAAAATTGAGAGGACAGA Experimental SGN-U566395 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|147803403|emb|CAN71046.1| (e_value=7e-88) hypothetical; (*ATH) AT3G24490.1 (e_value=9e-59) | Symbol: None | expressed protein, similar to 6b-interacting protein 1 (NtSIP1) (Nicotiana tabacum) GI:18149189 | chr3:8911029-8912182 FORWARD | Aliases: MOB24.1; Solyc12g043090.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44199930-44201057 transcript_region:SL2.40ch12:44199930..44201057+ functional_description:"Transcription factor (AHRD V1 *--- D7L9U5_ARALY); contains Interpro domain(s) IPR006578 MADF domain " 3 4 2 19 opLeV0100000400 sgn|U234730 GGATGTAGAAGAAATCGGAATATATCGCGGGTGTTAAGTCTAAGTACCATAGTTTATACTGCACATCTGA Experimental SGN-U586805 Tomato 200607#2 [1 ESTs aligned] \N \N 1 8 15 20 opLeV0100000401 sgn|U219897 CATAAACAAGGTGGGGGGTCAAGGTGGAACGGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATT Experimental SGN-U569288 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|38345489|emb|CAD41700.2| (e_value=4e-24) OSJNBa0010D21.2 [Oryza sativa (japonica cultivar-group)]; \N \N 1 4 15 20 opLeV0100000402 sgn|U240195 GGGACCTTCATGCTGAAGTGTTCTTCGGAACACATCAGACATTCCACTGTAAGCAGCCTCCGTATTTGTA Experimental SGN-U587144 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157341210|emb|CAO49117.1| (e_value=4e-68) unnamed; (*ATH) AT5G51050.1 (e_value=1e-60) Symbol: None | mitochondrial substrate carrier family protein, similar to peroxisomal Ca-dependent solute carrier (Oryctolagus cuniculus) GI:2352427; contains INTERPRO:IPR001993 Mitochondrial substrate carrier family, INTERPRO:IPR002048 calcium-bind... ; (*SWP) sp|Q6NYZ6|SCM2A_DANRE (e_value=2e-35) Calcium-binding mitochondrial carrier protein SCaMC-2-A OS=Danio rerio GN=slc25a25a; Solyc03g118090.2.1 genomic_reference:SL2.40ch03 gene_region:61114407-61118294 transcript_region:SL2.40ch03:61114407..61118294- go_terms:GO:0005509 functional_description:"Calcium-binding mitochondrial carrier protein SCaMC-1 (AHRD V1 **** B5X2X8_SALSA); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 " 1 2 15 20 opLeV0100000403 sgn|U217253 GCTGGAGCAGGGTATGGCAACATGACCATTATGGTAGGAGAAATGGGATGGCCTACAGATGGAAACAATT Experimental SGN-U572591 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|147860324|emb|CAN83571.1| (e_value=1e-135) hypothetical; (*ATH) AT1G64760.2 (e_value=1e-132) Symbol: None | similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:At5g18220.1); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:At3g04010.1); similar to glycosyl hydrolase family 17 protein [Ara... ; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=9e-132) Putative glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760; Solyc03g058450.2.1 genomic_reference:SL2.40ch03 gene_region:21917528-21919776 transcript_region:SL2.40ch03:21917528..21919776- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SXV6_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core " 1 8 19 20 opLeV0100000404 sgn|U217574 CTGGCACCAGTAATGCCGAAATTTGAAGTGAAGGACTTGGAGAGTTTGGATGGGAAGTATGACACTGTGG Experimental SGN-U581974 Tomato 200607#2 [59 ESTs aligned] (*GB) gi|7839365|gb|AAF70243.1|AF213968_1 (e_value=6e-162) S-adenosyl-L-methionine; (*ATH) AT4G25080.2 (e_value=5e-109) Symbol: None | magnesium-protoporphyrin O-methyltransferase, putative / magnesium-protoporphyrin IX methyltransferase, putative, similar to SP:Q55467 Magnesium-protoporphyrin O-methyltransferase (EC 2.1.1.1) (Magnesium-protoporphyrin IX methyltransf... ; (*SWP) sp|Q55467|CHLM_SYNY3 (e_value=3e-67) Magnesium-protoporphyrin O-methyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=chlM; Solyc03g118240.2.1 genomic_reference:SL2.40ch03 gene_region:61214116-61216115 transcript_region:SL2.40ch03:61214116..61216115- go_terms:GO:0046406 functional_description:"Magnesium-protoporphyrin ix methyltransferase (AHRD V1 **** D7MGJ7_ARALY); contains Interpro domain(s) IPR010251 Magnesium protoporphyrin O-methyltransferase " 1 6 19 20 opLeV0100000405 sgn|U214632 GACGCGATTATCTGTGTTGAACCTTCAGTTCAATTCATTGACAGGAGAAATCCCCAGCCTTGACACCGTC Experimental SGN-U563473 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157336952|emb|CAO21298.1| (e_value=2e-82) unnamed; (*ATH) AT5G58300.1 (e_value=4e-70) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative | chr5:23589105-23592587 FORWARD | Aliases: MCK7.17, MCK7_17; (*SWP) sp|Q9LVM0|Y5830_ARATH (e_value=3e-69) Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300; Solyc03g095490.2.1 genomic_reference:SL2.40ch03 gene_region:50063905-50066754 transcript_region:SL2.40ch03:50063905..50066754+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK" 1 4 19 20 opLeV0100000406 sgn|U225644 GCAAGTATACTGAAGGCGACCTCACTTCGTCTAGCTACGAGGACACAACTCAAGTCAGTCTTGACGATTT Experimental SGN-U582578 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157354342|emb|CAO46943.1| (e_value=9e-46) unnamed; (*ATH) AT5G49760.1 (e_value=2e-45) | Symbol: None | leucine-rich repeat family protein / protein kinase family protein, contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain | chr5:20233598-20238525 FORWARD | Aliases: K2I5.13, K2I5_13; (*SWP) sp|Q9LN59|WAKLK_ARATH (e_value=7e-22) Putative wall-associated receptor kinase-like 11 OS=Arabidopsis thaliana GN=WAKL11; Solyc01g102680.2.1 genomic_reference:SL2.40ch01 gene_region:83176089-83185689 transcript_region:SL2.40ch01:83176089..83185689+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like kinase, RLK" 1 2 19 20 opLeV0100000407 sgn|U231348 GCCAATCTTTGAACTGCCAGTCTTTCCCCAACACAAAAACTGCCACCACACGGTCCCAATCTTCCGGCTT Experimental SGN-U562942 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|217073460|gb|ACJ85089.1| (e_value=4e-150) unknown; (*ATH) AT3G22590.1 (e_value=4e-146) | Symbol: None | RNA pol II accessory factor Cdc73 family protein, contains Pfam PF05179: RNA pol II accessory factor, Cdc73 family | chr3:8003941-8005586 FORWARD | Aliases: F16J14.15; (*SWP) sp|Q8JZM7|CDC73_MOUSE (e_value=4e-27) Parafibromin OS=Mus musculus GN=Cdc73; Solyc06g054080.2.1 genomic_reference:SL2.40ch06 gene_region:33411739-33413560 transcript_region:SL2.40ch06:33411739..33413560- functional_description:"RNA polymerase II accessory factor Cdc73 family (AHRD V1 **-- B6JZW2_SCHJY); contains Interpro domain(s) IPR007852 RNA polymerase II accessory factor, Cdc73 " 1 8 3 19 opLeV0100000408 sgn|U221931 ATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACC Experimental SGN-U585393 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147806444|emb|CAN65326.1| (e_value=7e-22) hypothetical; (*ATH) AT5G67550.1 (e_value=6e-15) Symbol: None | expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At2g25270.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:XP_549958.1) | chr5:26963980-26966387 REVERSE | Aliases: K9I9.11, K9I9_... ; Solyc02g092350.2.1 genomic_reference:SL2.40ch02 gene_region:48021969-48023219 transcript_region:SL2.40ch02:48021969..48023219+ functional_description:"Unknown Protein (AHRD V1)" 1 6 3 19 opLeV0100000409 sgn|U232804 TTCTGGGTCCAACCCCACTGGCATTCCCCTATGCAAATGACCCTAATCCCCCACGGAACCAAAATGCTTC Experimental SGN-U596312 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|76161010|gb|ABA40468.1| (e_value=7e-33) Drm3-like protein [Solanum tuberosum]; (*ATH) AT1G56220.4 (e_value=2e-11) |; Solyc01g099840.2.1 genomic_reference:SL2.40ch01 gene_region:81745463-81747550 transcript_region:SL2.40ch01:81745463..81747550+ functional_description:"Auxin-repressed protein (AHRD V1 ***- B4FA62_MAIZE); contains Interpro domain(s) IPR008406 Dormancyauxin associated " 1 4 3 19 opLeV0100000410 sgn|U236235 AGAGACCAACGCCAGAAAATCGAACAGTACAAGCACCATTCTCTCCACCGTTCTCGCATCAAGCGATATC Experimental SGN-U567815 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|157335353|emb|CAO61183.1| (e_value=0) unnamed; (*ATH) AT5G42970.1 (e_value=1e-171) Symbol: None | COP9 signalosome complex subunit 4 / CSN complex subunit 4 (CSN4) (COP8) (FUS4), FUSCA4, COP8, CSN4; identical to CSN complex subunit 4 (Arabidopsis thaliana) GI:18056659, COP8 (Arabidopsis thaliana) GI:5802627; contains Pfam profile ... ; (*SWP) sp|Q8L5U0|CSN4_ARATH (e_value=1e-170) COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4; Solyc04g080160.2.1 genomic_reference:SL2.40ch04 gene_region:62012763-62021439 transcript_region:SL2.40ch04:62012763..62021439+ go_terms:GO:0005515 functional_description:"COP9 signalosome complex subunit 4 (AHRD V1 ***- B4FCA4_MAIZE); contains Interpro domain(s) IPR000717 Proteasome component region PCI " 1 2 3 19 opLeV0100000411 sgn|U223468 AGTTGTGGCCGGAAGCCGAAATCGCCACAAGTCGAGGTCCAATGAAGAATCAAAAACGTTATCAGCTCGG Experimental SGN-U581986 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157347959|emb|CAO22546.1| (e_value=5e-39) unnamed; (*ATH) AT3G22530.1 (e_value=3e-28) | Symbol: None | expressed protein, contains Pfam profile:PF00011 HSP20:Hsp20/alpha crystallin family | chr3:7977611-7978642 REVERSE | Aliases: F16J14.9; Solyc06g084220.1.1 evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:45699808-45700245 transcript_region:SL2.40ch06:45699808..45700245+ go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1)" 3 8 15 20 opLeV0100000412 sgn|U226549 GCAAGGCACGTTAGCCATGTTTGGAAAGTAGGGGTGCAATTAGAGAATGGCTTGAAGAGGACGAACATTG Experimental SGN-U572895 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157344156|emb|CAO69089.1| (e_value=1e-66) unnamed; (*ATH) AT3G11340.1 (e_value=1e-60) | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr3:3556713-3558275 FORWARD | Aliases: F11B9.23; (*SWP) sp|Q9FI99|CNGT1_ARATH (e_value=2e-53) Cytokinin-N-glucosyltransferase 1 OS=Arabidopsis thaliana GN=UGT76C1; Solyc03g078780.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:44999298-45000068 transcript_region:SL2.40ch03:44999298..45000068- go_terms:GO:0010294 functional_description:"UDP-glucosyltransferase (AHRD V1 **** C0LNQ9_MAIZE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase " 3 6 15 20 opLeV0100000413 sgn|U218079 GAGCTGGTGCAGTAGCACCACTTGTTACAGACATTCCAATATCATCAGTAGAGGAAGAGAGCAGTGAAGG Experimental SGN-U574029 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|157348044|emb|CAO22631.1| (e_value=5e-78) unnamed; (*ATH) AT4G02590.1 (e_value=5e-69) | Symbol: None | basic helix-loop-helix (bHLH) family protein, similar to A. thaliana putative protein F6I18.110, GenBank accession number 2980768 | chr4:1137498-1140491 REVERSE | Aliases: T10P11.13, T10P11_13; Solyc09g065820.2.1 genomic_reference:SL2.40ch09 gene_region:59693000-59697548 transcript_region:SL2.40ch09:59693000..59697548+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6U846_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding " 3 4 15 20 opLeV0100000414 sgn|U228249 CCCGTAGATAATGAGGTACTTGATTTATGGGCCTTGAAGGAGTTCAAGCCCGGATGTTCACTTGTCCACC Experimental SGN-U569065 Tomato 200607#2 [3 ESTs aligned] Solyc01g106870.2.1 genomic_reference:SL2.40ch01 gene_region:86350777-86353911 transcript_region:SL2.40ch01:86350777..86353911+ go_terms:GO:0006468 functional_description:"Receptor kinase 3 (AHRD V1 ***- Q948X3_BRACM); contains Interpro domain(s) IPR000719 Protein kinase, core " 3 2 15 20 opLeV0100000415 sgn|U213287 CAGAGGCAAATTTGTTGATGACCCTACCCCTCCTACTGGCCTTGAAAAGGCTGTTATCCCTCCTGGCAAA Experimental SGN-U580376 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|1709846|sp|P54773|PSBS_SOLLC (e_value=5e-72) RecName:; (*ATH) AT1G44575.1 (e_value=2e-65) Symbol: None | photosystem II 22kDa protein, chloroplast / CP22 (PSBS), identical to photosystem II 22 kDa protein, chloroplast (precursor) SP:Q9XF91 from (Arabidopsis thaliana); contains Pfam profile PF00504: Chlorophyll A-B binding protein | chr1:... ; (*SWP) sp|P54773|PSBS_SOLLC (e_value=3e-73) Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS; Solyc06g060340.2.1 genomic_reference:SL2.40ch06 gene_region:34712220-34715366 transcript_region:SL2.40ch06:34712220..34715366+ go_terms:GO:0016168,GO:0051738 functional_description:"Chloroplast photosystem II-associated protein (AHRD V1 ***- A8HPM2_CHLRE); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein " 3 8 19 20 opLeV0100000416 sgn|U220634 GAAAGCTGCTGCATTGGTTCCTGATATGACACCATTTCCTGTGAATCGATTTATGGCTACGTTGACGCCA Experimental SGN-U585883 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157349855|emb|CAO39711.1| (e_value=5e-71) unnamed; (*ATH) AT4G05400.1 (e_value=5e-58) | Symbol: None | expressed protein | chr4:2741183-2742912 FORWARD | Aliases: C6L9.80, C6L9_80; Solyc01g095420.2.1 genomic_reference:SL2.40ch01 gene_region:78437977-78440511 transcript_region:SL2.40ch01:78437977..78440511- go_terms:GO:0005507 functional_description:"Unknown Protein (AHRD V1)" 3 6 19 20 opLeV0100000417 sgn|U216717 CAGAGAACTACAGTGCTCGTAGCTTGCTGAAGAGTGCTAGCATCAGTGGTTCCAAGTGTGTGGAAGTAAA Experimental SGN-U570260 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|18401750|ref|NP_566595.1| (e_value=0) mitogen-activated protein kinase (MAPK), putative (MPK9) [Arabidopsis thaliana]; (*ATH) AT3G18040.1 (e_value=0) Symbol: None | mitogen-activated protein kinase, putative / MAPK, putative (MPK9), identical to ATMPK9 (Arabidopsis thaliana) gi:7106544:dbj:BAA92223; mitogen-activated protein kinase (MAPK), PMID:12119167; similar to blast and wounding induced mito... ; (*SWP) sp|Q9LV37|MPK9_ARATH (e_value=0) Mitogen-activated protein kinase 9 OS=Arabidopsis thaliana GN=MPK9; Solyc12g040680.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:40280910-40287741 transcript_region:SL2.40ch12:40280910..40287741+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 9 (AHRD V1 **** Q5XU40_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 3 4 19 20 opLeV0100000418 sgn|U233605 ATTTTTTACCTTTTTTCGGCCTACGTGTTACTATTTTGAAAAAAAGTCACCCAGCGTTGGGCCCACAAAA Experimental SGN-U594000 Tomato 200607#2 [1 ESTs aligned] \N \N 3 2 19 20 opLeV0100000419 sgn|U231387 GCCATCTTCGGTCTGCATATTTCCCCCATGAGTCCTATTGGCACTGTTGCTGCCAGTTCTGGCCCTATCA Experimental SGN-U563896 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157340064|emb|CAO45741.1| (e_value=0) unnamed; (*ATH) AT1G51760.1 (e_value=5e-169) | Symbol: None | IAA-amino acid hydrolase 3 / IAA-Ala hydrolase 3 (IAR3), identical to IAA-Ala hydrolase (IAR3) (Arabidopsis thaliana) GI:3421384 | chr1:19203137-19205311 FORWARD | Aliases: F19C24.4, F19C24_4; (*SWP) sp|O04373|ILL4_ARATH (e_value=5e-168) IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsis thaliana GN=ILL4; Solyc12g008690.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2064426-2068579 transcript_region:SL2.40ch12:2064426..2068579+ go_terms:GO:0016787,GO:0008152 functional_description:"Iaa-amino acid hydrolase 11 (AHRD V1 ***- B9GVN2_POPTR); contains Interpro domain(s) IPR017439 Peptidase M20D, mername-AA028/carboxypeptidase Ss1 " 3 8 3 19 opLeV0100000420 sgn|U215477 GAAGCAGTTATACTTGGTGCCGGCGCCTTTGAAGTTGCGGCTCGACAACACCTTATTAACGAAGTGAAAA Experimental SGN-U576925 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|157341397|emb|CAO49304.1| (e_value=0) unnamed; (*ATH) AT3G02530.1 (e_value=0) | Symbol: None | chaperonin, putative, similar to SWISS-PROT:P80317- T-complex protein 1, zeta subunit (TCP-1-zeta) (Mus musculus); contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family | chr3:528581-532589 REVERSE | Aliases: F16B3.16, F16B3_16; (*SWP) sp|P80317|TCPZ_MOUSE (e_value=1e-176) T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a; Solyc02g063090.2.1 genomic_reference:SL2.40ch02 gene_region:29734340-29741232 transcript_region:SL2.40ch02:29734340..29741232+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit zeta (AHRD V1 ***- B6T8Q5_MAIZE); contains Interpro domain(s) IPR012722 T-complex protein 1, zeta subunit " 3 6 3 19 opLeV0100000421 sgn|U219806 TATTGAAACATTAGAAGCCATTCAACCATTAAGAGACATGGCTGTGGCTTGTGGACAATGGCCACCTTCA Experimental SGN-U576867 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|147772215|emb|CAN69043.1| (e_value=2e-180) hypothetical; (*ATH) AT1G61590.1 (e_value=5e-170) | Symbol: None | protein kinase, putative, contains protein kinase domain, Pfam:PF00069; similar to serine/threonine protein kinase gi:1066501:gb:AAA81538 | chr1:22727166-22729739 REVERSE | Aliases: T25B24.6, T25B24_6; (*SWP) sp|P43293|NAK_ARATH (e_value=2e-100) Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK; Solyc08g074980.2.1 genomic_reference:SL2.40ch08 gene_region:56273456-56276440 transcript_region:SL2.40ch08:56273456..56276440- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 3 4 3 19 opLeV0100000422 sgn|U222007 GAGTGGTAATCCGGCCGGTCGGGAATTTTAAGAACAGCAACGATTACCATTACCAAACGCTCAAGGATAA Experimental SGN-U589952 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157353519|emb|CAO45475.1| (e_value=6e-93) unnamed; (*ATH) AT2G32070.1 (e_value=4e-83) Symbol: None | CCR4-NOT transcription complex protein, putative, similar to SWISS-PROT:Q60809 CCR4-NOT transcription complex, subunit 7 (CCR4-associated factor 1, (CAF1) (Mus musculus) | chr2:13647745-13649013 REVERSE | Aliases: F22D22.18, F22D22_18... ; (*SWP) sp|Q9D8X5|CNOT8_MOUSE (e_value=2e-52) CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8; Solyc03g117030.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60347167-60347991 transcript_region:SL2.40ch03:60347167..60347991+ go_terms:GO:0000175 functional_description:"CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 " 3 2 3 19 opLeV0100000423 sgn|U216182 CACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAA Experimental SGN-U568650 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|157330963|emb|CAO62420.1| (e_value=1e-141) unnamed; (*ATH) AT1G61620.1 (e_value=3e-129) | Symbol: None | expressed protein, contains Pfam profile: PF01363 FYVE zinc finger | chr1:22741208-22743095 FORWARD | Aliases: T25B24.3, T25B24_3; (*SWP) sp|Q5U3S7|NOSIP_DANRE (e_value=5e-35) Nitric oxide synthase-interacting protein OS=Danio rerio GN=nosip; Solyc02g079400.2.1 genomic_reference:SL2.40ch02 gene_region:38554066-38556783 transcript_region:SL2.40ch02:38554066..38556783- go_terms:GO:0005515 functional_description:"Nitric oxide synthase interacting protein (AHRD V1 ***- B6TCA5_MAIZE); contains Interpro domain(s) IPR016818 Nitric oxide synthase-interacting " 1 8 16 20 opLeV0100000424 sgn|U220112 AAACAGCCTCTATACCGTCACCCATGGGAAGACGTCCTCTACACGAAGTGAAAACGCTTTCGATAGCAAC Experimental SGN-U566946 Tomato 200607#2 [46 ESTs aligned] (*GB) gi|13160653|gb|AAK13318.1|AF290958_1 (e_value=0) ATP:citrate; (*ATH) AT3G06650.1 (e_value=0) Symbol: None | ATP-citrate synthase, putative / ATP-citrate (pro-S-)-lyase, putative / citrate cleavage enzyme, putative, strong similarity to ATP:citrate lyase (Capsicum annuum) GI:13160653; contains Pfam profiles PF00549: CoA-ligase, PF02629: CoA ... ; (*SWP) sp|Q54YA0|ACLY_DICDI (e_value=0) Probable ATP-citrate synthase OS=Dictyostelium discoideum GN=acly; Solyc12g099260.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64799719-64804216 transcript_region:SL2.40ch12:64799719..64804216- go_terms:GO:0005515,GO:0003878 functional_description:"ATP citrate lyase a-subunit (AHRD V1 **** Q93YH4_LUPAL); contains Interpro domain(s) IPR016141 Citrate synthase-like, core " 1 6 16 20 opLeV0100000425 sgn|U230816 TGGGAAGAAGAAAGGCGCTGCTCAACTGCGGGTGTTCAATTTAGGCAACACATCTCCTGTGCCAGTTTCA Experimental SGN-U577876 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|15236712|ref|NP_191922.1| (e_value=2e-45) nucleotide sugar epimerase family [Arabidopsis thaliana]; (*ATH) AT4G00110.1 (e_value=2e-47) Symbol: None | NAD-dependent epimerase/dehydratase family protein, similar to nucleotide sugar epimerase from Vibrio vulnificus GI:3093975 (PID:g3093975), WbnF (Escherichia coli) GI:5739472, CAPI protein {Staphylococcus aureus} SP:P39858; contains P... ; (*SWP) sp|O81312|GAE3_ARATH (e_value=2e-46) UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3; Solyc01g091200.2.1 genomic_reference:SL2.40ch01 gene_region:76648646-76650521 transcript_region:SL2.40ch01:76648646..76650521+ go_terms:GO:0044237,GO:0008152,GO:0005975 functional_description:"NAD dependent epimerase/dehydratase family protein expressed (AHRD V1 ***- Q2MJA7_ORYSJ); contains Interpro domain(s) IPR016040 NAD(P)-binding domain " 1 4 16 20 opLeV0100000426 sgn|U240826 TTCCATACTAGGAACTGCAACAAGAGGAACAGCCTTCCTCAAACTTACTCCAAATTGTTCCTCCATGTTC Experimental SGN-U602550 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157359135|emb|CAO67055.1| (e_value=6e-60) unnamed; (*ATH) AT2G45570.1 (e_value=7e-56) Symbol: None | cytochrome P450 76C2, putative (CYP76C2) (YLS6), identical to SP:O64637 Cytochrome P450 76C2 (EC 1.14.-.-) {Arabidopsis thaliana}, cDNA YLS6 mRNA for cytochrome P450 (CYP76C2), partial cds GI:13122289 | chr2:18786867-18789032 REVERSE ... ; (*SWP) sp|O64637|C76C2_ARATH (e_value=6e-55) Cytochrome P450 76C2 OS=Arabidopsis thaliana GN=CYP76C2; Solyc06g084820.1.1 genomic_reference:SL2.40ch06 gene_region:37961026-37963705 transcript_region:SL2.40ch06:37961026..37963705+ go_terms:GO:0019825 functional_description:"cytochrome P450" 1 2 16 20 opLeV0100000427 sgn|U241158 CCTTTTTTGGCCCCCAAGTTACTAAAATTTTTCGGGTCAAAAAAAGCAAATGTGGGATTTGGGGAAGCAA Experimental SGN-U591614 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157355450|emb|CAO48840.1| (e_value=4e-19) unnamed; (*ATH) AT5G05340.1 (e_value=4e-13) | Symbol: None | peroxidase, putative, similar to peroxidase (Nicotiana tabacum) gi:5381253:dbj:BAA82306; similar to Peroxidase P7 (Brassica rapa (Turnip)) SWISS-PROT:P00434 | chr5:1578952-1580876 REVERSE | Aliases: K18I23.14, K18I23_14; (*SWP) sp|Q0D3N0|PER2_ORYSJ (e_value=6e-13) Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PRX112; \N \N 1 8 20 20 opLeV0100000428 sgn|U223429 AAGCTTACACTGCTCTTTTGTCCGCCTATAGCCGTAGTGGTCGCTTTCACGAAGCTTTTTCTATCCTGGA Experimental SGN-U584678 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157353616|emb|CAO46133.1| (e_value=0) unnamed; (*ATH) AT5G48730.1 (e_value=2e-171) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr5:19780378-19782362 FORWARD | Aliases: K24G6.6, K24G6_6; (*SWP) sp|Q9S7Q2|PP124_ARATH (e_value=6e-41) Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2; Solyc01g006500.2.1 genomic_reference:SL2.40ch01 gene_region:1089833-1093094 transcript_region:SL2.40ch01:1089833..1093094- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMK8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat " 1 6 20 20 opLeV0100000429 M84800 TGCTGTTCAATCAAAACCTCCATCAAAGCGTGATCCTCCCAAAATGCAAACAGACAATAATAAACTCTAG Experimental SGN-U595532 Tomato 200607#2 [1 ESTs aligned] Solyc05g051750.2.1 genomic_reference:SL2.40ch05 gene_region:61277162-61281598 transcript_region:SL2.40ch05:61277162..61281598- functional_description:"Prosystemin (AHRD V1 ***- Q5MBK9_BETVU); contains Interpro domain(s) IPR009966 Prosystemin " 1 2 20 20 opLeV0100000430 sgn|U216537 GCAGCAACCAATGGTTGGAACAGGGATGAACCAAACCTACATGCAAGGTCCTGCAAGGTCACAGCTAATG Experimental SGN-U567359 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|157338753|emb|CAO42104.1| (e_value=2e-89) unnamed; (*ATH) AT1G25540.1 (e_value=2e-84) | Symbol: None | phytochrome and flowering time regulatory protein (PFT1), PMID: 12815435 | chr1:8969052-8974647 REVERSE | Aliases: F2J7.4, F2J7_4; Solyc12g070100.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:54648529-54669876 transcript_region:SL2.40ch12:54648529..54669876- go_terms:GO:0003713 functional_description:"Mediator of RNA polymerase II transcription subunit 25 (AHRD V1 *-** MED25_XENTR)" 1 8 4 19 opLeV0100000431 sgn|U240933 GAACTAGGCATGTAAAAAGTATCAGGTCGTAGCAAATGTAAGGAATAAATTAACAATAATAGGTCCAATG Experimental SGN-U583522 Tomato 200607#2 [2 ESTs aligned] \N \N 1 6 4 19 opLeV0100000432 sgn|U218863 CCCAATTCTTATATAGTGAGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGT Experimental SGN-U584884 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|118481123|gb|ABK92515.1| (e_value=7e-110) unknown; (*ATH) AT4G38660.1 (e_value=2e-100) Symbol: None | thaumatin, putative, similar to thaumatin-like protein (Arabidopsis thaliana) GI:2435406, thaumatin-like protein precursor (Pyrus pyrifolia) GI:3241854; contains Pfam profile PF00314: Thaumatin family | chr4:18066171-18068095 REVERSE ... ; (*SWP) sp|P83332|TLP1_PRUPE (e_value=1e-69) Thaumatin-like protein 1 OS=Prunus persica; Solyc02g083760.2.1 genomic_reference:SL2.40ch02 gene_region:41620182-41622029 transcript_region:SL2.40ch02:41620182..41622029- go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- Q9STX6_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related " 1 4 4 19 opLeV0100000433 sgn|U213358 GGATGAGCTTAACCCTACTGGGGACAACTTGGCTAAGCTGTCCATCGCCGATGGTCCAGCAAAGACTAAA Experimental SGN-U577151 Tomato 200607#2 [62 ESTs aligned] (*GB) gi|48478827|gb|AAT44738.1| (e_value=0) UDP-glucose:protein transglucosylase-like protein SlUPTG1 [Lycopersicon esculentum]; (*ATH) AT3G02230.1 (e_value=0) | Symbol: None | reversibly glycosylated polypeptide-1 (RGP1), identical to reversibly glycosylated polypeptide-1 (AtRGP) (Arabidopsis thaliana) GI:2317729 | chr3:415402-417554 FORWARD | Aliases: F14P3.12, F14P3_12; (*SWP) sp|Q9SC19|UPTG1_SOLTU (e_value=0) Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1; Solyc05g012070.2.1 genomic_reference:SL2.40ch05 gene_region:5295089-5298245 transcript_region:SL2.40ch05:5295089..5298245- go_terms:GO:0016760 functional_description:"Alpha-1 4-glucan-protein synthase (AHRD V1 **-* B9RLK7_RICCO); contains Interpro domain(s) IPR004901 Alpha-1,4-glucan-protein synthase, UDP-forming " 1 2 4 19 opLeV0100000434 sgn|U214716 CGGGCCCCAACTCATATCATTTCCACAATATCTGACGATAGAGGTGAAGAGCCTTGCTATGCTGGCGTAC Experimental SGN-U566947 Tomato 200607#2 [31 ESTs aligned] (*GB) gi|13160653|gb|AAK13318.1|AF290958_1 (e_value=0) ATP:citrate; (*ATH) AT5G49460.1 (e_value=0) Symbol: None | ATP-citrate synthase, putative / ATP-citrate (pro-S-)-lyase, putative / citrate cleavage enzyme, putative, strong similarity to ATP:citrate lyase (Capsicum annuum) GI:13160653; contains Pfam profiles PF00549: CoA-ligase, PF02629: CoA ... ; (*SWP) sp|Q54YA0|ACLY_DICDI (e_value=0) Probable ATP-citrate synthase OS=Dictyostelium discoideum GN=acly; Solyc01g059880.2.1 genomic_reference:SL2.40ch01 gene_region:61770639-61776611 transcript_region:SL2.40ch01:61770639..61776611- go_terms:GO:0005515,GO:0003878 functional_description:"ATP citrate lyase a-subunit (AHRD V1 **** Q93YH4_LUPAL); contains Interpro domain(s) IPR016141 Citrate synthase-like, core " 3 8 16 20 opLeV0100000435 sgn|U228329 ACCATTTGCAGCAAGGAACACGTCTATTAGGATAATGGTATGTCTTTCTAGAACGTTGTGTCTTTTGGAA Experimental SGN-U570090 Tomato 200607#2 [2 ESTs aligned] \N \N 3 6 16 20 opLeV0100000436 AJ001914 TCATTATATCCGTTGAACTCGCAGTGGCTACCAACTCAAGCTGATGATTTTCAGTACCCTCTTAAGGTCC Experimental SGN-U594815 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|3492795|emb|CAA05086.1| (e_value=0) phyA [Lycopersicon esculentum]; (*ATH) AT1G09570.1 (e_value=0) | Symbol: None | phytochrome A (PHYA), identical to SP:P14712 Phytochrome A {Arabidopsis thaliana} | chr1:3095258-3100327 REVERSE | Aliases: F14J9.23, F14J9_23; (*SWP) sp|P30733|PHYA_SOLTU (e_value=0) Phytochrome A OS=Solanum tuberosum GN=PHYA; \N \N 3 4 16 20 opLeV0100000437 sgn|U218342 TCAAGGACTTGACCATGGAAAATGGGACTTGTCCTGGGCAAAGTGGACATATCAGGTTGGGCTTAAAGGG Experimental SGN-U581494 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|7939625|gb|AAF70825.1|AF154424_1 (e_value=0) putative; (*ATH) AT4G36360.1 (e_value=0) | Symbol: None | beta-galactosidase, putative / lactase, putative, similar to beta-galactosidase precursor SP:P48980 from (Lycopersicon esculentum) | chr4:17176345-17181245 REVERSE | Aliases: F23E13.200, F23E13_200; (*SWP) sp|Q9SCV9|BGAL3_ARATH (e_value=0) Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3; Solyc02g084720.2.1 genomic_reference:SL2.40ch02 gene_region:42396478-42402602 transcript_region:SL2.40ch02:42396478..42402602- go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- Q9LLS9_SOLLC); contains Interpro domain(s) IPR019801 Glycoside hydrolase, family 35, conserved site IPR001944 Glycoside hydrolase, family 35 IPR000922 D-galactoside/L-rhamnose binding SUEL lectin " 3 2 16 20 opLeV0100000438 sgn|U223392 CCTCTGGTCTAGAAGTGATAACAAAAGGCCTCGACTCTAGACCATCAGGGAGGATCGAGAATCCCGAAGG Experimental SGN-U575946 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|13346176|gb|AAK19610.1|AF336277_1 (e_value=3e-168) BNLGHi8377; (*ATH) AT1G79840.1 (e_value=2e-143) Symbol: None | homeobox-leucine zipper protein 10 (HB-10) / HD-ZIP transcription factor 10 / homeobox protein (GLABRA2), identical to homeobox protein (GLABRA2) (homeobox-leucine zipper protein ATHB-10) (HD-ZIP protein ATHB-10) GB:P46607 (Arabidopsi... ; (*SWP) sp|P46607|HGL2_ARATH (e_value=2e-142) Homeobox-leucine zipper protein GLABRA 2 OS=Arabidopsis thaliana GN=GL2; Solyc03g120620.2.1 genomic_reference:SL2.40ch03 gene_region:63020513-63026632 transcript_region:SL2.40ch03:63020513..63026632+ go_terms:GO:0003677 functional_description:"Homeobox-leucine zipper protein ATHB-15 (AHRD V1 *-*- ATB15_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START " 3 8 20 20 opLeV0100000439 sgn|U231593 TAACGAAGCCATTGACAGCGATTTTTACCTGCTCGCTAAGTCCTACTTCGATTGTCGGGAGTACCGGCGG Experimental SGN-U570232 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157359152|emb|CAO67074.1| (e_value=2e-73) unnamed; (*ATH) AT3G48150.1 (e_value=4e-66) Symbol: None | cell division cycle family protein / CDC family protein, similar to cell division cycle protein 23 (Homo sapiens) GI:3283051, anaphase-promoting complex subunit 8 (Homo sapiens) GI:6180017; contains Pfam profile PF00515: TPR Domain | ... ; (*SWP) sp|Q9UJX2|CDC23_HUMAN (e_value=6e-13) Cell division cycle protein 23 homolog OS=Homo sapiens GN=CDC23; Solyc03g113740.2.1 genomic_reference:SL2.40ch03 gene_region:57845637-57851848 transcript_region:SL2.40ch03:57845637..57851848- go_terms:GO:0005515,GO:0004842 functional_description:"Anaphase promoting complex subunit 8/cell division cycle protein 23-like protein (Fragment) (AHRD V1 **-- Q5SC97_OSTTA); contains Interpro domain(s) IPR007192 Cdc23 " 3 6 20 20 opLeV0100000440 sgn|U239371 GTCTAGCTCGTATGGAAGGAATTCATTGGTCTGTTCTGGTTCAGACGAAAGCAATTCACTGTTCTGTTCT Experimental SGN-U577019 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|147855764|emb|CAN83444.1| (e_value=9e-25) hypothetical; \N \N 3 4 20 20 opLeV0100000441 sgn|U218154 CTACTTAGCAGATGACAAGACTAATCCAATACCACTTCCTACAAAATCAAGCACAAAGGAATTGGCTGCT Experimental SGN-U581373 Tomato 200607#2 [30 ESTs aligned] (*GB) gi|157340207|emb|CAO45884.1| (e_value=0) unnamed; (*ATH) AT3G16110.1 (e_value=2e-177) | Symbol: ATPDIL1-6 | Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. | chr3:5460847-5463742 REVERSE | Aliases: MSL1.15, ATPDIL1-6, PDI-LIKE 1-6; (*SWP) sp|P05307|PDIA1_BOVIN (e_value=2e-56) Protein disulfide-isomerase OS=Bos taurus GN=P4HB; Solyc03g120720.2.1 genomic_reference:SL2.40ch03 gene_region:63066502-63072695 transcript_region:SL2.40ch03:63066502..63072695+ go_terms:GO:0003756 functional_description:"Protein disulfide isomerase L-3b (AHRD V1 **** C6KXH6_SOYBN); contains Interpro domain(s) IPR013766 Thioredoxin domain " 3 2 20 20 opLeV0100000442 sgn|U221953 AAATCACCTCCGCAATCCATCAGATTATTGTCAACGGCGCCGCTCTACTCTCATCTGCCCAGTTGACAAA Experimental SGN-U585826 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157331583|emb|CAO66002.1| (e_value=3e-72) unnamed; (*ATH) AT1G34370.1 (e_value=2e-42) | Symbol: None | zinc finger (C2H2 type) family protein, contains Pfam domain, PF00096: Zinc finger, C2H2 type | chr1:12550465-12552607 FORWARD | Aliases: F7P12.7, F7P12_7; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=1e-11) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP; Solyc04g056320.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:53214442-53215563 transcript_region:SL2.40ch04:53214442..53215563+ go_terms:GO:0003700,GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 *-** D7KK61_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type " 3 8 4 19 opLeV0100000443 sgn|U218906 TCTTCACCTTCATCTTCTCCGGCAAGTGAGCAAAAGGTAAAACTCTCAAGGATGAGCAGGTCGGGTCAAC Experimental SGN-U578332 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|15224075|ref|NP_179971.1| (e_value=7e-34) small nuclear ribonucleo protein E -related [Arabidopsis thaliana]; (*ATH) AT2G23930.1 (e_value=6e-36) Symbol: None | small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative, similar to small nuclear ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG) (Homo sapiens) SWISS-PROT:Q15357 | chr2:10189345-10190320 FORWAR... ; (*SWP) sp|O82221|RUXG_ARATH (e_value=5e-35) Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana GN=At2g23930; \N \N 3 6 4 19 opLeV0100000444 sgn|U221418 ATTTGTGAAGTCGTGATTTAATATGTCTGGAAAGAACAGTTACACCGCGTATAACTCGAACGAGACATCA Experimental SGN-U564368 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|111073735|dbj|BAF02556.1| (e_value=1e-30) hypothetical; (*ATH) AT3G48180.1 (e_value=1e-10) | Symbol: None | expressed protein | chr3:17801556-17801789 REVERSE | Aliases: T24C20.60; \N \N 3 4 4 19 opLeV0100000445 sgn|U215505 GATGAAGAAGTACACTGCCATTGATAAATGGAACACACAGCTAAGGTCTCTCTACCAAACTGTTGGCAAC Experimental SGN-U578817 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|118481037|gb|ABK92472.1| (e_value=0) unknown; (*ATH) AT2G26990.1 (e_value=0) Symbol: None | COP9 signalosome complex subunit 2 / CSN complex subunit 2 (CSN2), proteasome, COP9-complex and eIF3-domain protein; identical to CSN complex subunit 2 (Arabidopsis thaliana) GI:18056655; identical to cDNA CSN complex subunit 2 (CSN2)... ; (*SWP) sp|Q8W207|CSN2_ARATH (e_value=0) COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2; Solyc01g008840.2.1 genomic_reference:SL2.40ch01 gene_region:2864398-2872190 transcript_region:SL2.40ch01:2864398..2872190+ go_terms:GO:0003714 functional_description:"COP9 signalosome complex subunit 2 (AHRD V1 ***- B6TIW9_MAIZE); contains Interpro domain(s) IPR013143 PCI/PINT associated module " 3 2 4 19 opLeV0100000446 sgn|U227476 GATACTGCAGAGTCTGCAGAGAATAAAGGAAAGAAACGCCCGGTGGGTAATAAGGAAGCTGTTCGCAAGT Experimental SGN-U567970 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147768431|emb|CAN73631.1| (e_value=3e-72) hypothetical; (*ATH) AT4G35040.1 (e_value=2e-57) | Symbol: None | bZIP transcription factor family protein, contains Pfam profile: PF00170 bZIP transcription factor | chr4:16680419-16682098 FORWARD | Aliases: M4E13.100, M4E13_100; Solyc01g111580.2.1 genomic_reference:SL2.40ch01 gene_region:89568634-89573278 transcript_region:SL2.40ch01:89568634..89573278+ go_terms:GO:0005634,GO:0006355 functional_description:"BZIP family transcription factor (Fragment) (AHRD V1 *-*- D7LU06_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper " 1 5 13 20 opLeV0100000447 sgn|U222857 GATTATGGAGTCCGCCTAAAACCGAACGTCAAGGATTTTGGGAAGGTGTTACAGGGACCAGAATGGATGT Experimental SGN-U574684 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157353906|emb|CAO46441.1| (e_value=1e-60) unnamed; (*ATH) AT5G09760.1 (e_value=2e-58) | Symbol: None | pectinesterase family protein, contains Pfam profile: PF01095 pectinesterase | chr5:3032376-3034544 FORWARD | Aliases: F17I14.50, F17I14_50; (*SWP) sp|Q43143|PMEU1_SOLLC (e_value=1e-14) Pectinesterase U1 OS=Solanum lycopersicum GN=PMEU1; Solyc03g078090.2.1 genomic_reference:SL2.40ch03 gene_region:43597039-43600438 transcript_region:SL2.40ch03:43597039..43600438+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase family protein (AHRD V1 ***- D7MRW1_ARALY); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic " 1 3 13 20 opLeV0100000448 sgn|U232997 CATACTTGCTCCCACATTAAACAGGGTGTTGATTGCTGAATTGTCTCTATGTGAAGACCCTTCAACTTCA Experimental SGN-U590800 Tomato 200607#2 [1 ESTs aligned] (*SWP) sp|P22180|PMA1_SOLLC (e_value=1e-11) Plasma membrane ATPase 1 OS=Solanum lycopersicum GN=LHA1; Solyc06g071100.2.1 genomic_reference:SL2.40ch06 gene_region:40059389-40066822 transcript_region:SL2.40ch06:40059389..40066822- go_terms:GO:0016020,GO:0008152,GO:0016021 functional_description:"H-ATPase (AHRD V1 ***- Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux " 1 1 13 20 opLeV0100000449 sgn|U215714 AAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACT Experimental SGN-U590652 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118481645|gb|ABK92764.1| (e_value=2e-12) unknown; (*ATH) AT1G26880.2 (e_value=1e-14) |; (*SWP) sp|Q42351|RL341_ARATH (e_value=3e-13) 60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A; Solyc05g007560.2.1 genomic_reference:SL2.40ch05 gene_region:2100690-2103376 transcript_region:SL2.40ch05:2100690..2103376- go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L34 (AHRD V1 ***- B6UH15_MAIZE); contains Interpro domain(s) IPR008195 Ribosomal protein L34e " 1 7 17 20 opLeV0100000450 sgn|U242818 TTGTATCATATGTGACTCCATACTCTTCTCGATATTGTCACTCGAATGTTTGAGCCAGACAAGACTCATG Experimental SGN-U602184 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147819593|emb|CAN59821.1| (e_value=2e-28) hypothetical; (*ATH) AT2G30240.1 (e_value=7e-29) | Symbol: None | cation/hydrogen exchanger, putative (CHX13), monovalent cation:proton antiporter family 2 (CPA2) member, PMID:11500563 | chr2:12906984-12909856 REVERSE | Aliases: T9D9.5, T9D9_5; Solyc06g082230.2.1 genomic_reference:SL2.40ch06 gene_region:44432943-44435972 transcript_region:SL2.40ch06:44432943..44435972+ go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 14 (AHRD V1 **** CHX14_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger " 1 5 17 20 opLeV0100000451 sgn|U237718 AAGCTGTCATTGCTAATTGAATCTCCCCTTCTGTAATTGGCAAGAACCCTACACGTTTCTCTCGAGATCT Experimental SGN-U566367 Tomato 200607#2 [2 ESTs aligned] Solyc05g008210.2.1 genomic_reference:SL2.40ch05 gene_region:2600547-2603074 transcript_region:SL2.40ch05:2600547..2603074- functional_description:"Unknown Protein (AHRD V1)" 1 3 17 20 opLeV0100000452 sgn|U219502 AAGCAAACGAGCTATGCTGACATGCTGGATCTAGCAGTGCAGCATATTCGAACCCTTCAAGATCAGGTTC Experimental SGN-U574134 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157359556|emb|CAO67768.1| (e_value=1e-82) unnamed; (*ATH) AT1G05805.1 (e_value=9e-60) | Symbol: None | basic helix-loop-helix (bHLH) family protein | chr1:1744773-1747692 FORWARD | Aliases: None; Solyc09g098110.2.1 genomic_reference:SL2.40ch09 gene_region:67276888-67284715 transcript_region:SL2.40ch09:67276888..67284715- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6SY24_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH " 1 1 17 20 opLeV0100000453 sgn|U241272 TTAATGACACATTTCCTCTCCCCCCATCCCAATGACAAATACCCGGTCTTCCCCAATCGTACAAGTTCCC Experimental SGN-U598977 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|116560876|gb|ABJ99601.1| (e_value=1e-35) NBS-LRR; (*SWP) sp|Q60CZ8|R1A10_SOLDE (e_value=6e-11) Putative late blight resistance protein homolog R1A-10 OS=Solanum demissum GN=R1A-10; Solyc10g008220.2.1 genomic_reference:SL2.40ch10 gene_region:2335367-2338246 transcript_region:SL2.40ch10:2335367..2338246+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein" 1 7 1 19 opLeV0100000454 sgn|U234568 TCCGGGATTCTGAGGAGATTTTGTTCCTGGAATTCCAATGAATTGCGCTCCGACCGGAACTTCGACAAAG Experimental SGN-U589547 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157356372|emb|CAO62524.1| (e_value=2e-24) unnamed; (*ATH) AT3G47730.1 (e_value=7e-23) | Symbol: None | ABC transporter family protein, AbcA, Dictyostelium discoideum, DDU66526 | chr3:17605045-17609881 REVERSE | Aliases: T23J7.60; (*SWP) sp|Q84K47|ATHI_ARATH (e_value=5e-22) ABC2 homolog 1 OS=Arabidopsis thaliana GN=ATH1; Solyc06g070940.2.1 genomic_reference:SL2.40ch06 gene_region:39950899-39956171 transcript_region:SL2.40ch06:39950899..39956171+ go_terms:GO:0017111,GO:0016887 functional_description:"ATP-binding cassette transporter sub-family A member 14 (AHRD V1 ***- Q6XBG3_MOUSE); contains Interpro domain(s) IPR003439 ABC transporter-like " 1 5 1 19 opLeV0100000455 sgn|U213193 CCTACGACACCAACTGCTCTTAGAAGCTTGATGAATAGCTTCAGAAGAAGCGCCACTTTAGTGGACGTTT Experimental SGN-U583216 Tomato 200607#2 [165 ESTs aligned] (*GB) gi|1619300|emb|CAA64565.1| (e_value=9e-118) LRR protein [Lycopersicon esculentum]; (*ATH) AT5G21090.1 (e_value=4e-96) Symbol: None | leucine-rich repeat protein, putative, similar to leucine rich repeat protein (LRP) GI:1619300 from (Lycopersicon esculentum); contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611 | chr5:7164614-7167257 FORWARD ... ; (*SWP) sp|Q94F62|BAK1_ARATH (e_value=4e-59) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1; \N \N 1 3 1 19 opLeV0100000456 sgn|U217737 GTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAG Experimental SGN-U564990 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|6688535|emb|CAB65172.1| (e_value=8e-119) Rab11 GTPase [Lycopersicon esculentum]; (*ATH) AT1G06400.1 (e_value=2e-98) | Symbol: None | Ras-related GTP-binding protein (ARA-2), identical to Ras-related protein ARA-2 SP:P28185 from (Arabidopsis thaliana) | chr1:1950843-1952726 REVERSE | Aliases: T2D23.10, T2D23_10; (*SWP) sp|Q01111|YPT3_NICPL (e_value=1e-115) Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3; Solyc07g055290.2.1 genomic_reference:SL2.40ch07 gene_region:60697004-60702293 transcript_region:SL2.40ch07:60697004..60702293- go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related " 1 1 1 19 opLeV0100000457 sgn|U232864 AAGGGTTGGTTCGTAGCTGCTGGGCCATTTGAATAACCAATGCCAGTTTTTATCCCATTACCTATCCCAC Experimental SGN-U594215 Tomato 200607#2 [1 ESTs aligned] (*ATH) AT4G19420.2 (e_value=4e-11) | Symbol: None | pectinacetylesterase family protein, contains Pfam profile: PF03283 pectinacetylesterase | chr4:10587177-10590560 REVERSE | Aliases: None; \N \N 3 7 13 20 opLeV0100000458 sgn|U242186 TGCCATCCCCCTCCCAGACCCCAAACTTGTGGGGCCCATTCCCTTTCCAGCCCCGGACCAATTCCCACAT Experimental SGN-U601712 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157346182|emb|CAO15879.1| (e_value=2e-20) unnamed; (*ATH) AT5G06130.1 (e_value=2e-20) | Symbol: None | chaperone protein dnaJ-related, similar to unknown protein (pir::T00468); contains Pfam PF00684 : DnaJ central domain (4 repeats) | chr5:1853450-1855873 REVERSE | Aliases: K16F4.10, K16F4_10; \N \N 3 3 13 20 opLeV0100000459 sgn|U215178 CCTCGTATCGTTCTCTACACCTAAGCAACTCAAATCCACCGTCTCAGTAACCCGACCTATCCGTGCCATG Experimental SGN-U593162 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|131166|sp|P12372|PSAD_SOLLC (e_value=4e-53) RecName:; (*ATH) AT1G03130.1 (e_value=7e-39) Symbol: None | photosystem I reaction center subunit II, chloroplast, putative / photosystem I 20 kDa subunit, putative / PSI-D, putative (PSAD2), similar to SP:P12353 Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20... ; (*SWP) sp|P12372|PSAD_SOLLC (e_value=3e-54) Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD; Solyc06g054260.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:33565231-33565857 transcript_region:SL2.40ch06:33565231..33565857- go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit II (AHRD V1 ***- B4FAW3_MAIZE); contains Interpro domain(s) IPR003685 Photosystem I protein PsaD " 3 1 13 20 opLeV0100000460 sgn|U221880 GGGTTTTAGAGATGTTATATTAAAGGATCCTTATTACGTAGAGGCGTATCGCGGGCTGGTTGTGGCTGCA Experimental SGN-U582893 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|18404409|ref|NP_565860.1| (e_value=5e-57) chloroplast lumen common protein family [Arabidopsis thaliana]; (*ATH) AT2G37400.1 (e_value=3e-59) | Symbol: None | chloroplast lumen common family protein, very similar to GI:6729507 (At5g02590) and GI:7413648 (At3g53560) (Arabidopsis thaliana) | chr2:15703234-15704481 REVERSE | Aliases: F3G5.19, F3G5_19; Solyc10g085900.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64252187-64253107 transcript_region:SL2.40ch10:64252187..64253107+ go_terms:GO:0005488 functional_description:"Tetratricopeptide TPR_2 repeat protein (AHRD V1 **-- B4B1G0_9CHRO); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical " 3 7 17 20 opLeV0100000461 sgn|U216268 CGTGTCGGTTCAGTTCATTCACACCCAAAACCACACTTGTTCCCTTCCTTATGCTCCAAGGGCTCTCACT Experimental SGN-U579801 Tomato 200607#2 [36 ESTs aligned] (*GB) gi|15223354|ref|NP_174575.1| (e_value=1e-72) ribosomal protein L11p family [Arabidopsis thaliana]; (*ATH) AT1G32990.1 (e_value=9e-75) | Symbol: None | ribosomal protein L11 family protein, similar to chloroplast ribosomal protein L11 GI:21312 from (Spinacia oleracea) | chr1:11955768-11957264 FORWARD | Aliases: F9L11.15, F9L11_15; (*SWP) sp|Q9MAP3|RK11_ARATH (e_value=8e-74) 50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana GN=RPL11; Solyc08g083350.2.1 genomic_reference:SL2.40ch08 gene_region:62993669-62996264 transcript_region:SL2.40ch08:62993669..62996264+ go_terms:GO:0003735,GO:0005515 functional_description:"50S ribosomal protein L11 (AHRD V1 ***- B6U1J2_MAIZE); contains Interpro domain(s) IPR006519 Ribosomal protein L11, bacterial-type " 3 5 17 20 opLeV0100000462 sgn|U232989 ATAGCCTCCAATTCGAACCCAGCCTTGTATATTTGGCTCAAATACCTTGCGTTCACCGGTTGATCTGCTA Experimental SGN-U588731 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|629669|pir||S39507 (e_value=7e-81) glucuronosyl transferase homolog, ripening-related - tomato (fragment); (*ATH) AT3G46660.1 (e_value=7e-39) | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr3:17200249-17202152 REVERSE | Aliases: F12A12.180; (*SWP) sp|Q9FI99|CNGT1_ARATH (e_value=2e-29) Cytokinin-N-glucosyltransferase 1 OS=Arabidopsis thaliana GN=UGT76C1; Solyc10g085280.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63836072-63837576 transcript_region:SL2.40ch10:63836072..63837576+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- C0LNQ9_MAIZE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase " 3 3 17 20 opLeV0100000463 sgn|U214821 CAAGAGGATGTCAGCAGTTTCAAAAAAGTGATCAGGTCCTATTAACGTGTCACAAATCTGTATCAGATCA Experimental SGN-U564947 Tomato 200607#2 [31 ESTs aligned] (*GB) gi|157359153|emb|CAO67075.1| (e_value=1e-83) unnamed; (*ATH) AT2G26210.1 (e_value=3e-39) | Symbol: None | ankyrin repeat family protein, contains ankyrin repeats, Pfam:PF00023 | chr2:11164230-11166369 FORWARD | Aliases: T1D16.15, T1D16_15; Solyc06g031690.2.1 genomic_reference:SL2.40ch06 gene_region:17332143-17333738 transcript_region:SL2.40ch06:17332143..17333738+ functional_description:"Ankyrin repeat family protein (AHRD V1 ***- D7LCV0_ARALY); contains Interpro domain(s) IPR002110 Ankyrin " 3 1 17 20 opLeV0100000464 sgn|U216569 TGGAAGAATATGGCTTATGCTCCATGTCTTTATTTTCAAAGCACTTCTCTAGTTGTTTTCCTGGAGCATC Experimental SGN-U574932 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|17976705|emb|CAC80839.2| (e_value=4e-18) dihydrofolate synthetase /folylpolyglutamate synthetase [Arabidopsis thaliana]; (*ATH) AT5G05980.2 (e_value=3e-20) Symbol: None | similar to dihydrofolate synthetase/folylpolyglutamate synthetase (DHFS/FPGS4) [Arabidopsis thaliana] (TAIR:At3g55630.3); similar to folylpoly-gammaglutamate synthetase precursor [Cricetulus griseus] (GB:AAK69546.1); contains InterPro... ; \N \N 3 7 1 19 opLeV0100000465 sgn|U218829 GCTGCTCTTGACTTTTGGGTGGTTAAGAACGTCAGTGGACGTATTCTTGTGGGTTTAAGGTGGTGGAATG Experimental SGN-U583453 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157347017|emb|CAO17399.1| (e_value=5e-89) unnamed; (*ATH) AT1G09330.1 (e_value=2e-82) | Symbol: None | expressed protein, contains 3 transmembrane domains; contains Pfam profile PF05832: Eukaryotic protein of unknown function | chr1:3012764-3015093 REVERSE | Aliases: T31J12.5, T31J12_5; (*SWP) sp|Q8LEK2|FA18_ARATH (e_value=2e-81) Uncharacterized FAM18-like protein At1g09330 OS=Arabidopsis thaliana GN=At1g09330; Solyc06g073270.2.1 genomic_reference:SL2.40ch06 gene_region:41534966-41538784 transcript_region:SL2.40ch06:41534966..41538784- go_terms:GO:0005515 functional_description:"Golgi apparatus membrane protein tvp23 (AHRD V1 **-- C5JI99_AJEDS); contains Interpro domain(s) IPR008564 Protein of unknown function DUF846, eukaryotic " 3 5 1 19 opLeV0100000466 sgn|U223158 ATGAGCGAGATATACAAGGACCTGCCAAAGACTCCGAAGATGTCCTTCTACGCCATCTTCGACGGTCACG Experimental SGN-U573715 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|66819213|ref|XP_643266.1| (e_value=6e-41) protein; (*ATH) AT2G25070.1 (e_value=8e-31) | Symbol: None | protein phosphatase 2C, putative / PP2C, putative | chr2:10670319-10673043 REVERSE | Aliases: F13D4.1; (*SWP) sp|Q09172|PP2C2_SCHPO (e_value=5e-33) Protein phosphatase 2C homolog 2 OS=Schizosaccharomyces pombe GN=ptc2; \N \N 3 3 1 19 opLeV0100000467 sgn|U225151 GTGAACCAGGTGAAGACGCTGCATTCGAAGTGTTAATGGGAAGTAAAAAAGGGTTCCTGACTACCAGGTT Experimental SGN-U582993 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|147862663|emb|CAN79335.1| (e_value=3e-143) hypothetical; (*ATH) AT1G12370.2 (e_value=3e-138) Symbol: None | type II CPD photolyase PHR1 (PHR1), nearly identical to type II CPD photolyase PHR1 (Arabidopsis thaliana) GI:2984707; similar to class II DNA photolyase (GI:5081541) (Chlamydomonas reinhardtii); supporting cDNA gi:2984706:gb:AF053365... ; (*SWP) sp|P34205|PHR_CARAU (e_value=2e-86) Deoxyribodipyrimidine photo-lyase OS=Carassius auratus GN=phr; Solyc08g079530.2.1 genomic_reference:SL2.40ch08 gene_region:60206477-60209995 transcript_region:SL2.40ch08:60206477..60209995- go_terms:GO:0003913 functional_description:"Deoxyribodipyrimidine photolyase (AHRD V1 **** D6SS50_9DELT); contains Interpro domain(s) IPR008148 DNA photolyase, class 2 " 3 1 1 19 opLeV0100000468 sgn|U226303 GCACTTCCTTGCTATTCAAAATGACCTGAATTCGGATGATTGTGTTGGATTCTGGCTTTTGTTAAACCTG Experimental SGN-U575557 Tomato 200607#2 [26 ESTs aligned] (*GB) gi|157350727|emb|CAO40818.1| (e_value=6e-132) unnamed; (*ATH) AT3G08010.1 (e_value=7e-127) | Symbol: None | expressed protein | chr3:2555988-2557511 FORWARD | Aliases: F17A17.35; Solyc02g005200.2.1 genomic_reference:SL2.40ch02 gene_region:1511547-1515429 transcript_region:SL2.40ch02:1511547..1515429- go_terms:GO:0003723 functional_description:"PsaB translation factor (Fragment) (AHRD V1 ***- A4S2E4_OSTLU); contains Interpro domain(s) IPR009472 Protein of unknown function DUF1092 " 1 7 14 20 opLeV0100000469 sgn|U219905 GCATTTTGATACCCCTGTTGTTCGGAACAGCCCGATTGTTGACGCCAATGGGCCTTTCGGCTCGCTACTA Experimental SGN-U583873 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157340052|emb|CAO45729.1| (e_value=1e-38) unnamed; (*ATH) AT3G21270.1 (e_value=6e-28) Symbol: None | Dof-type zinc finger domain-containing protein (ADOF2), identical to Dof zinc finger protein ADOF2 GI:3608263 from (Arabidopsis thaliana); identical to cDNA adof2 mRNA for Dof zinc finger protein GI:3608262; contains Pfam profile PF02... ; (*SWP) sp|Q94AR6|DOF31_ARATH (e_value=6e-27) Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana GN=DOF3.1; Solyc06g062520.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:35829288-35829866 transcript_region:SL2.40ch06:35829288..35829866- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 4 (AHRD V1 *-*- A5HWF3_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type " 1 5 14 20 opLeV0100000470 sgn|U214227 GGTCTGGAGTAAGAGTGTCTATTATTGGTTGTAAAACCGACCTCCCAATGACATTACAAAAATGCATAGC Experimental SGN-U583641 Tomato 200607#2 [82 ESTs aligned] (*GB) gi|212727255|gb|ACJ38408.1| (e_value=4e-160) Z,Z-farnesyl; (*ATH) AT5G58770.1 (e_value=2e-65) | Symbol: None | dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative, similar to GI:796076 | chr5:23751602-23752860 FORWARD | Aliases: MZN1.21, MZN1_21; (*SWP) sp|Q56Y11|DDPS2_ARATH (e_value=2e-64) Dehydrodolichyl diphosphate synthase 2 OS=Arabidopsis thaliana GN=At5g58770; Solyc08g005680.2.1 genomic_reference:SL2.40ch08 gene_region:530818-557653 transcript_region:SL2.40ch08:530818..557653+ go_terms:GO:0045547 functional_description:"Undecaprenyl pyrophosphate synthase (AHRD V1 **** B7GG85_ANOFW); contains Interpro domain(s) IPR001441 Di-trans-poly-cis-decaprenylcistransferase-like " 1 3 14 20 opLeV0100000471 sgn|U215391 ACAGACCTTGGATCTGGTCCAAGTGTTCCTGGTGATCCTGCTGGAGCAAGGCTAAAACCTGGAAGTGGAT Experimental SGN-U584275 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|18419973|ref|NP_568378.1| (e_value=0) expressed protein [Arabidopsis thaliana]; (*ATH) AT5G19620.1 (e_value=0) Symbol: None | outer membrane OMP85 family protein, weak similarity to chloroplastic outer envelope membrane protein (OEP75) (Pisum sativum) GI:633607; contains Pfam profile PF01103: outer membrane protein, OMP85 family | chr5:6623206-6627811 FORWAR... ; (*SWP) sp|Q43715|TOC75_PEA (e_value=3e-32) Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75; Solyc11g062070.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46004281-46018463 transcript_region:SL2.40ch11:46004281..46018463- go_terms:GO:0019867 functional_description:"Outer envelope membrane protein (AHRD V1 **-- Q31PR1_SYNE7); contains Interpro domain(s) IPR000184 Bacterial surface antigen (D15) " 1 1 14 20 opLeV0100000472 sgn|U220825 TAACAATGAGAATGAGGAGAGACTTGGTGATGACGTAGCACAAGTGAAGTTGCAGCCCTTTCAAACACCG Experimental SGN-U581475 Tomato 200607#2 [31 ESTs aligned] (*GB) gi|1619602|emb|CAA69976.1| (e_value=2e-71) MtN3 [Medicago truncatula]; (*ATH) AT5G23660.1 (e_value=2e-68) | Symbol: None | nodulin MtN3 family protein, similar to MtN3 GI:1619602 (root nodule development) from (Medicago truncatula) | chr5:7971654-7973928 REVERSE | Aliases: MQM1.8, MQM1_8; (*SWP) sp|Q8LFH5|RPG1_ARATH (e_value=5e-30) Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1; Solyc05g024260.2.1 genomic_reference:SL2.40ch05 gene_region:30963570-30966033 transcript_region:SL2.40ch05:30963570..30966033+ go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_DANRE); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue " 1 7 18 20 opLeV0100000473 sgn|U221854 TCAATTCACCTACACAAGAGTCGGTCATGAAAGTGGAAGGCTCTTTGGAACCAGCTCGTCAGACCACAGG Experimental SGN-U566256 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|28973727|gb|AAO64180.1| (e_value=0) unknown protein [Arabidopsis thaliana]; (*ATH) AT4G24020.1 (e_value=0) | Symbol: None | RWP-RK domain-containing protein, similar to nodule inception protein (Lotus japonicus) GI:6448579; contains Pfam profile: PF02042 RWP-RK domain | chr4:12479796-12484002 FORWARD | Aliases: T19F6.10, T19F6_10; Solyc08g082750.2.1 genomic_reference:SL2.40ch08 gene_region:62610961-62620087 transcript_region:SL2.40ch08:62610961..62620087+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- A9DM78_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK " 1 5 18 20 opLeV0100000474 sgn|U223256 GCTCTGTACTGTGCCTTACAAAGCAGGGACTGTGGGAACTATATCTCTATACTCCTTTTAACTCTTCGTA Experimental SGN-U571407 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157344167|emb|CAO69100.1| (e_value=5e-12) unnamed; (*ATH) AT5G59080.1 (e_value=8e-12) | Symbol: None | expressed protein | chr5:23864634-23865721 REVERSE | Aliases: K18B18.8, K18B18_8; \N \N 1 3 18 20 opLeV0100000475 sgn|U233362 ATTTACTGGGAGCAGTGCAGTTCAGAGGATTGGGAGGCGAATGGTCGCCGAGAGCCCATTCCATTTATTA Experimental SGN-U588629 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118483703|gb|ABK93745.1| (e_value=1e-28) unknown; (*ATH) AT1G76400.1 (e_value=1e-26) | Symbol: None | ribophorin I family protein, similar to ribophorin I (Sus scrofa) GI:9857227; contains Pfam profile PF04597: Ribophorin I | chr1:28663126-28666604 REVERSE | Aliases: F15M4.10, F15M4_10; \N \N 1 1 18 20 opLeV0100000476 sgn|U239677 TCAGGGCATCCTGCTCCATTGGGTATTTCCTTTCAGCCAGATGGATACGTGAATTTCGCTCTCTACTCAC Experimental SGN-U586477 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|27728147|gb|AAN15318.1| (e_value=6e-158) isoamylase isoform 2 [Solanum tuberosum]; (*ATH) AT1G03310.1 (e_value=3e-54) Symbol: DBE1 | Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene c... ; Solyc09g064800.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:57806545-57809145 transcript_region:SL2.40ch09:57806545..57809145- go_terms:GO:0004556,GO:0019156 functional_description:"Glycogen debranching enzyme (AHRD V1 ***- B1R1G0_CLOBU); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region " 1 7 2 19 opLeV0100000477 sgn|U228287 TCTAACCCAACTCGAGCTTGGCGCGCTATTGAGGTCTCTTGGTTTAAAACCAGTCCTGATCAGCTCGAAA Experimental SGN-U571145 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147779752|emb|CAN60669.1| (e_value=4e-17) hypothetical; (*ATH) AT3G03000.1 (e_value=1e-17) | Symbol: None | calmodulin, putative, similar to calmodulin SP:P04352 from (Chlamydomonas reinhardtii); contains Pfam profile: PF00036 EF hand (4 copies) | chr3:677247-678091 FORWARD | Aliases: F13E7.5, F13E7_5; (*SWP) sp|Q9M8U1|CML18_ARATH (e_value=1e-16) Probable calcium-binding protein CML18 OS=Arabidopsis thaliana GN=CML18; Solyc08g076490.2.1 genomic_reference:SL2.40ch08 gene_region:57660690-57663299 transcript_region:SL2.40ch08:57660690..57663299- go_terms:GO:0042803 functional_description:"Protein kinase-like protein (AHRD V1 ***- Q9SND6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 1 5 2 19 opLeV0100000478 sgn|U217324 CTTCTCTCTCGCTTGATCTTCTCTAAGTTCCGTAACAATGTCGGATGGTCAGGAGAGCGATAAGAATATT Experimental SGN-U584404 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|195647508|gb|ACG43222.1| (e_value=0) eukaryotic; (*ATH) AT3G26618.1 (e_value=0) | Symbol: None | eukaryotic release factor 1 family protein / eRF1 family protein, contains Pfam profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1 domain 3 | chr3:9789842-9791588 FORWARD | Aliases: MLJ15.16; (*SWP) sp|P35614|ERF1Z_ARATH (e_value=0) Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3; \N \N 1 3 2 19 opLeV0100000479 sgn|U220334 GAGGCTGTTGCAGCTGGTACACTAGGAGAAGGAGTTATCCTTCCACAGATGACTGCTACCATTGAGAAGT Experimental SGN-U570983 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|14600166|gb|AAK71287.1|AF387785_1 (e_value=0) leucine-zipper; (*ATH) AT5G65210.2 (e_value=8e-108) | Symbol: None | bZIP family transcription factor (TGA1), identical to transcription factor (TGA1) GI:16550 from (Arabidopsis thaliana) | chr5:26075771-26078278 FORWARD | Aliases: None; (*SWP) sp|P14232|TGA1A_TOBAC (e_value=3e-137) TGACG-sequence-specific DNA-binding protein TGA-1A OS=Nicotiana tabacum GN=TGA1A; Solyc04g054320.2.1 genomic_reference:SL2.40ch04 gene_region:51444423-51451664 transcript_region:SL2.40ch04:51444423..51451664- go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** A7Y1S1_BRAJU); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 " 1 1 2 19 opLeV0100000480 sgn|U214220 GTTCAGATGCCATTGGCCTGGCCCCAAGGGCTATGGAAAAGTGTCGGAGCAGAAATTAGCCTATCTACAC Experimental SGN-U568849 Tomato 200607#2 [104 ESTs aligned] (*GB) gi|71040802|gb|AAZ20313.1| (e_value=0) AUX/IAA protein [Lycopersicon esculentum]; (*ATH) AT5G65670.2 (e_value=2e-104) | Symbol: None | auxin-responsive protein / indoleacetic acid-induced protein 9 (IAA9), identical to SP:Q38827 Auxin-responsive protein IAA9 (Indoleacetic acid-induced protein 9) {Arabidopsis thaliana} | chr5:26270884-26273607 FORWARD | Aliases: None; (*SWP) sp|Q38827|IAA9_ARATH (e_value=5e-102) Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9; Solyc04g076850.2.1 genomic_reference:SL2.40ch04 gene_region:59354651-59358834 transcript_region:SL2.40ch04:59354651..59358834+ go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 *-*- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein " 3 7 14 20 opLeV0100000481 sgn|U214391 ATGAAGTGCCTTACTGCGCTGTCTGCTTTGGAAGGGGAATGCGGGTTTCTCGCTGCTAACTTGTATGCAA Experimental SGN-U572670 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|147845891|emb|CAN82167.1| (e_value=0) hypothetical; (*ATH) AT4G31480.1 (e_value=0) Symbol: None | coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative, similar to Coatomer beta subunit (Beta-coat protein) (Beta-COP) from {Rattus norvegicus} SP:P23514, {Mus musculus} SP:Q9JIF7, {Homo sapiens} SP:P53618... ; (*SWP) sp|Q53PC7|COPB1_ORYSJ (e_value=0) Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica GN=Os11g0174000; Solyc10g081920.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62184972-62189867 transcript_region:SL2.40ch10:62184972..62189867- go_terms:GO:0005515 functional_description:"Coatomer subunit beta-1 (AHRD V1 ***- D7MB61_ARALY); contains Interpro domain(s) IPR016460 Coatomer, beta subunit " 3 5 14 20 opLeV0100000482 sgn|U221916 AATGTCAAATGCCTTAGTAGCTTTGACTTCAGAAGCTGCATCAATTCCCACGCCTAAACTTAAGAATGTT Experimental SGN-U576158 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|138996985|dbj|BAF52855.1| (e_value=0) repressor; (*ATH) AT5G04560.2 (e_value=0) |; (*SWP) sp|Q8LK56|DME_ARATH (e_value=1e-180) Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME; Solyc10g083630.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62731863-62741419 transcript_region:SL2.40ch10:62731863..62741419- go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"Repressor of silencing 2b (AHRD V1 **-- A4PF90_TOBAC); contains Interpro domain(s) IPR003265 HhH-GPD domain " 3 3 14 20 opLeV0100000483 sgn|U219736 ATACACCTCGGGCCTCAGCCATCGGTTGACGGTGGAGGAAGCCATGGGAAGGAGGAGCAGAATCGGAAAA Experimental SGN-U588724 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157342294|emb|CAO64407.1| (e_value=8e-16) unnamed; (*ATH) AT3G48140.1 (e_value=9e-12) | Symbol: None | senescence-associated protein, putative, similar to B12D protein (Ipomoea batatas) GB:AAD22104 | chr3:17789385-17790534 FORWARD | Aliases: T24C20.20; Solyc02g067580.2.1 genomic_reference:SL2.40ch02 gene_region:32316480-32318685 transcript_region:SL2.40ch02:32316480..32318685+ functional_description:"B12D-like protein (AHRD V1 ***- D2XQY6_WOLAR); contains Interpro domain(s) IPR010530 B12D " 3 1 14 20 opLeV0100000484 sgn|U217000 AGGTAATTGAGAAGCCAAGGCTAGTGCTAAAATTCATATGGATGGAGAAAAATATTGGACTTGGCCTTGA Experimental SGN-U575228 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|147784271|emb|CAN68341.1| (e_value=9e-41) hypothetical; (*ATH) AT1G68590.1 (e_value=2e-40) Symbol: None | plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative, similar to SP:P82412 Plastid-specific 30S ribosomal protein 3, chloroplast precursor (PSRP-3) {Spinacia oleracea}; contains Pfam profile PF04839: Plastid and cyano... ; (*SWP) sp|P82412|RRP3_SPIOL (e_value=2e-40) 30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea GN=PSRP3; Solyc05g009570.2.1 genomic_reference:SL2.40ch05 gene_region:3767465-3769326 transcript_region:SL2.40ch05:3767465..3769326- go_terms:GO:0009536 functional_description:"Ribosomal protein PSRP-3/Ycf65 (AHRD V1 *-*- B5W261_SPIMA); contains Interpro domain(s) IPR006924 Ribosomal protein, PSRP-3/Ycf65 " 3 7 18 20 opLeV0100000485 sgn|U220416 GGACAATATGGTGATGCCATAAAATGGTTGTCGTGGGCTGTCATTCTTCTCGAGAAGGCTGGTGATGAAG Experimental SGN-U582708 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|147819173|emb|CAN69220.1| (e_value=2e-84) hypothetical; (*ATH) AT3G16760.1 (e_value=1e-70) Symbol: None | tetratricopeptide repeat (TPR)-containing protein, low similarity to TPR-containing protein involved in spermatogenesis TPIS (Mus musculus) GI:6272682; contains Pfam profile PF00515: tetratricopeptide repeat (TPR) domain | chr3:570301... ; (*SWP) sp|Q07617|SPAG1_HUMAN (e_value=9e-13) Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG1; Solyc01g066050.2.1 genomic_reference:SL2.40ch01 gene_region:65381118-65385261 transcript_region:SL2.40ch01:65381118..65385261- go_terms:GO:0005488 functional_description:"Peptidyl-prolyl cis-trans isomerase FKBP5 (AHRD V1 *--- FKBP5_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical " 3 5 18 20 opLeV0100000486 sgn|U236673 AGGTCAAGGTTCTCACAGGGGGCGGGGGAAGACGGTACCTATAACACGACCTTGAACGTGAGAGCACTGA Experimental SGN-U574128 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157342499|emb|CAO65211.1| (e_value=0) unnamed; (*ATH) AT3G42950.1 (e_value=0) Symbol: None | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein, weak similarity to polygalacturonase precursor (Cucumis melo) GI:3320460; contains PF00295: Glycosyl hydrolases family 28 | chr3:15026128-15029059 F... ; (*SWP) sp|Q9LW07|PGLRL_ARATH (e_value=1e-25) Putative polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720; Solyc07g042160.2.1 genomic_reference:SL2.40ch07 gene_region:52473909-52486990 transcript_region:SL2.40ch07:52473909..52486990+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 **-- B6SZN5_MAIZE); contains Interpro domain(s) IPR012334 Pectin lyase fold " 3 3 18 20 opLeV0100000487 sgn|U228295 GACTGTCTTTTACCAACACCATAACTGCCAACATAACTAGCAGAATTTTTAGGTGGCATGTCTGAGGGTG Experimental SGN-U563976 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157351050|emb|CAO41207.1| (e_value=2e-26) unnamed; (*ATH) AT3G07810.1 (e_value=3e-11) | Symbol: None | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | chr3:2492279-2495756 FORWARD | Aliases: F17A17.15; Solyc07g048030.2.1 genomic_reference:SL2.40ch07 gene_region:56541879-56545444 transcript_region:SL2.40ch07:56541879..56545444+ go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 " 3 1 18 20 opLeV0100000488 sgn|U233484 CACGAGTCCGCCTGTTGAATGGCACACTAAAAACTTATGATCCAAAATTCATTCCAGCCTGTCCAAGCAG Experimental SGN-U582643 Tomato 200607#2 [37 ESTs aligned] (*GB) gi|48428165|sp|Q9LZQ0|CX5C2_ARATH (e_value=7e-23) Cytochrome; (*ATH) AT2G47380.1 (e_value=7e-25) | Symbol: None | cytochrome c oxidase subunit Vc family protein / COX5C family protein, contains Pfam profile: PF05799 cytochrome c oxidase subunit Vc (COX5C) | chr2:19448025-19449123 FORWARD | Aliases: T8I13.22; (*SWP) sp|Q9LZQ0|CX5C2_ARATH (e_value=5e-24) Cytochrome c oxidase polypeptide Vc-2 OS=Arabidopsis thaliana GN=At3g62400; Solyc01g079420.2.1 genomic_reference:SL2.40ch01 gene_region:71005941-71009193 transcript_region:SL2.40ch01:71005941..71009193+ go_terms:GO:0005746 functional_description:"Cytochrome c oxidase subunit VC family protein (AHRD V1 *-*- D7LT63_ARALY); contains Interpro domain(s) IPR008432 Cytochrome c oxidase subunit Vc " 3 7 2 19 opLeV0100000489 sgn|U217446 AGGGAGGCAGTAGTACAAGCTCTCAAGTTTTTTGATGGTAACGAAGAACAAGCTGCCGGATATCTATTTG Experimental SGN-U572588 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|118486011|gb|ABK94849.1| (e_value=1e-151) unknown; (*ATH) AT3G13235.1 (e_value=2e-146) | Symbol: None | ubiquitin family protein, contains INTERPRO:IPR000626 ubiquitin domain | chr3:4271343-4274436 REVERSE | Aliases: None; (*SWP) sp|A1CDT9|DDI1_ASPCL (e_value=3e-60) DNA damage-inducible protein 1 OS=Aspergillus clavatus GN=ddi1; Solyc10g005890.2.1 genomic_reference:SL2.40ch10 gene_region:683370-690823 transcript_region:SL2.40ch10:683370..690823- go_terms:GO:0031593,GO:0000149 functional_description:"DNA-damage inducible protein DDI1-like (AHRD V1 ***- Q8LF25_ARATH); contains Interpro domain(s) IPR019103 Peptidase aspartic, eukaryotic predicted " 3 5 2 19 opLeV0100000490 sgn|U217538 CAATGGAACCATTCTTCACCGTGCTTCTTTCCGCGCTGTTTCTTGCAGAGCGGCCATCTCCTTGGATTGT Experimental SGN-U566605 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|18395855|ref|NP_566142.1| (e_value=8e-119) triose/phosphate translocator, putative [Arabidopsis thaliana]; (*ATH) AT3G01550.1 (e_value=5e-121) | Symbol: None | triose phosphate/phosphate translocator, putative, similar to SWISS-PROT:P52178 triose phosphate/phosphate translocator (Cauliflower){Brassica oleracea} | chr3:216820-219016 REVERSE | Aliases: F4P13.10, F4P13_10; (*SWP) sp|P52178|TPT2_BRAOB (e_value=6e-107) Triose phosphate/phosphate translocator, non-green plastid, chloroplastic OS=Brassica oleracea var. botrytis GN=NGTPT; Solyc02g086650.2.1 genomic_reference:SL2.40ch02 gene_region:43880802-43884639 transcript_region:SL2.40ch02:43880802..43884639+ go_terms:GO:0008524 functional_description:"Glucose-6-phosphate/phosphate translocator 2 (AHRD V1 **** B6TIJ4_MAIZE); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator " 3 3 2 19 opLeV0100000491 sgn|U223566 CATGACATTAGGAATCCTTGGACTTAAGGATTTCTTTCCTTGAGCTTGGGAATCATATATCAAGCTCTTC Experimental SGN-U572246 Tomato 200607#2 [4 ESTs aligned] \N \N 3 1 2 19 opLeV0100000492 sgn|U242845 CCAAGAATCCACAGAGGGGTCAATTCTTTAGATACTTCCGCTCCATATACTAAAGTAACAGCAAGATACA Experimental SGN-U569475 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157333360|emb|CAO16992.1| (e_value=9e-99) unnamed; (*ATH) AT5G63050.1 (e_value=2e-77) | Symbol: EMB2759 | expressed protein | chr5:25309661-25312221 FORWARD | Aliases: MDC12.1, MDC12_1, EMB2759, EMBRYO DEFECTIVE 2759; Solyc03g112670.2.1 genomic_reference:SL2.40ch03 gene_region:57094988-57100243 transcript_region:SL2.40ch03:57094988..57100243+ functional_description:"Genomic DNA chromosome 5 P1 clone MDC12 (AHRD V1 **-- Q9FML8_ARATH)" 1 7 15 20 opLeV0100000493 sgn|U231714 AGAGCAAGTTATCAGGGAGTTCCATACTATATAGCTACAAAAAGTAGCAACACAGCAGAGCAGCTTGGTA Experimental SGN-U586263 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157353826|emb|CAO46358.1| (e_value=3e-70) unnamed; (*ATH) AT2G31820.1 (e_value=2e-67) | Symbol: None | ankyrin repeat family protein, contains ankyrin repeat domains, Pfam:PF00023 | chr2:13537427-13539639 FORWARD | Aliases: F20M17.14, F20M17_14; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=3e-39) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620; \N \N 1 3 15 20 opLeV0100000494 sgn|U225410 TCCAACTCAAACATCCTCAGACTCAATGCAGGACTTACATGGGTTGAAGCTCAGGAACCACTTCACCAAG Experimental SGN-U586499 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157341056|emb|CAO47861.1| (e_value=4e-66) unnamed; (*ATH) AT4G34215.2 (e_value=2e-64) | Symbol: None | expressed protein | chr4:16379607-16381230 REVERSE | Aliases: None; (*SWP) sp|Q8L9J9|CAES_ARATH (e_value=2e-63) Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215; Solyc04g074110.2.1 genomic_reference:SL2.40ch04 gene_region:57711282-57714900 transcript_region:SL2.40ch04:57711282..57714900+ functional_description:"Acetyl xylan esterase A (AHRD V1 **-- D7JXX9_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative " 1 5 19 20 opLeV0100000495 sgn|U219161 TGCTGGGGACTATGTAGAAGCAATGTGGATGATGCTGCAGCAAGAGAAGCCGGATGATTATGTGGTAGCA Experimental SGN-U574104 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|118486218|gb|ABK94951.1| (e_value=0) unknown; (*ATH) AT5G66280.1 (e_value=0) | Symbol: None | GDP-D-mannose 4,6-dehydratase, putative, strong similarity to GDP-D-mannose-4,6-dehydratase (Arabidopsis thaliana) GI:1764100 | chr5:26493392-26495344 FORWARD | Aliases: K1L20.6, K1L20_6; (*SWP) sp|Q9SNY3|GMD1_ARATH (e_value=0) GDP-mannose 4,6 dehydratase 1 OS=Arabidopsis thaliana GN=GMD1; Solyc03g118270.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61240383-61241474 transcript_region:SL2.40ch03:61240383..61241474+ go_terms:GO:0008446 functional_description:"GDP-mannose 4 6-dehydratase (AHRD V1 **** B7XH28_NICBE); contains Interpro domain(s) IPR006368 GDP-mannose 4,6-dehydratase " 1 3 19 20 opLeV0100000496 sgn|U218212 GGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACC Experimental SGN-U585120 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|15238151|ref|NP_198982.1| (e_value=0) 6-phosphogluconate dehydrogenase [Arabidopsis thaliana]; (*ATH) AT5G41670.1 (e_value=0) Symbol: None | 6-phosphogluconate dehydrogenase family protein, contains Pfam profiles: PF00393 6-phosphogluconate dehydrogenase C-terminal domain, PF03446 NAD binding domain of 6-phosphogluconate | chr5:16682612-16684399 REVERSE | Aliases: MBK23.20... ; (*SWP) sp|P21577|6PGD_SYNE7 (e_value=7e-155) 6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd; Solyc12g056120.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47444899-47446389 transcript_region:SL2.40ch12:47444899..47446389+ go_terms:GO:0050662,GO:0008152,GO:0016491,GO:0055114 functional_description:"6-phosphogluconate dehydrogenase decarboxylating (AHRD V1 ***- Q9FFR3_ARATH); contains Interpro domain(s) IPR006113 6-phosphogluconate dehydrogenase, decarboxylating " 1 1 19 20 opLeV0100000497 sgn|U234579 GAGTCATGGTCTGCGAACACCTCATTGACCTGAAAGTATGTACCATTGAGCGGAAAGCTTCCTCTTGTAG Experimental SGN-U588330 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|138996985|dbj|BAF52855.1| (e_value=4e-67) repressor; (*ATH) AT5G04560.2 (e_value=6e-61) |; (*SWP) sp|Q8LK56|DME_ARATH (e_value=5e-60) Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME; Solyc10g083630.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62731863-62741419 transcript_region:SL2.40ch10:62731863..62741419- go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"Repressor of silencing 2b (AHRD V1 **-- A4PF90_TOBAC); contains Interpro domain(s) IPR003265 HhH-GPD domain " 1 7 3 19 opLeV0100000498 sgn|U212574 CATGACATTGTTCTCAGCCAAGTAGAAGAAGACTTCAGCCCAGACCTTCTGTGCTACCTCAAAAGTCCTG Experimental SGN-U593458 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|164470331|gb|ABY58016.1| (e_value=3e-136) plastidic; (*ATH) AT4G38970.1 (e_value=9e-120) Symbol: None | fructose-bisphosphate aldolase, putative, strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) (GI:4827251), Oryza sativa, PIR2:T02057 (SP:Q40677) | chr4:18163490-18165734 REV... ; (*SWP) sp|Q944G9|ALFC2_ARATH (e_value=8e-119) Probable fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=FBA2; Solyc01g110360.2.1 genomic_reference:SL2.40ch01 gene_region:88844597-88847246 transcript_region:SL2.40ch01:88844597..88847246+ go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- B0FPD8_SOLTU); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I " 1 5 3 19 opLeV0100000499 sgn|U212696 CAACTCTTGCTCTAAGGAGGGCCACCGCCTCATCACTATTCAACAGGCTCGTCAATCCTGTTCGTTCTGC Experimental SGN-U578546 Tomato 200607#2 [85 ESTs aligned] (*GB) gi|3492854|dbj|BAA32547.1| (e_value=1e-76) mitochondrial small heat shock protein [Lycopersicon esculentum]; (*ATH) AT4G25200.1 (e_value=2e-33) | Symbol: None | 23.6 kDa mitochondrial small heat shock protein (HSP23.6-M), contains Pfam profile PF00011: Hsp20/alpha crystallin family | chr4:12917027-12918063 FORWARD | Aliases: F24A6.40, F24A6_40; (*SWP) sp|P11890|HS23C_CHERU (e_value=2e-38) Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23; Solyc08g078700.2.1 genomic_reference:SL2.40ch08 gene_region:59635844-59637072 transcript_region:SL2.40ch08:59635844..59637072+ functional_description:"Heat shock protein 22 (AHRD V1 ***- Q27JQ0_METAN); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 " 1 3 3 19 opLeV0100000500 sgn|U219496 TATTCGGGTTGCAGATGGCGGTGTTGCCGCGTTCCTCAACTGTTTCAGCGACCGGATTCACCGGCGGAGC Experimental SGN-U579329 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|18418457|ref|NP_568358.1| (e_value=2e-21) plastid-specific ribosomal protein 6 precursor (Psrp-6) - like [Arabidopsis thaliana]; (*ATH) AT5G17870.1 (e_value=1e-23) | Symbol: None | plastid-specific ribosomal protein-related, contains similarity to plastid-specific ribosomal protein 6 precursor GI:7578927 from (Spinacia oleracea) | chr5:5907777-5908337 FORWARD | Aliases: MPI7.3, MPI7_3; (*SWP) sp|Q9FKP0|PSRP6_ARATH (e_value=1e-22) 50S ribosomal protein 6, chloroplastic OS=Arabidopsis thaliana GN=PSRP6; Solyc04g077130.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:59671130-59671465 transcript_region:SL2.40ch04:59671130..59671465- functional_description:"50S ribosomal protein 6, chloroplastic (AHRD V1 ***- PSRP6_ARATH)" 1 1 3 19 opLeV0100000501 sgn|U220354 CTGTTGCACGAATTAGAATAGGTCTTGCCCATTCAACTAAGGTATCGTCGTCACCGTCCATGTCAATTGG Experimental SGN-U574017 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|218196301|gb|EEC78728.1| (e_value=2e-96) hypothetical; (*ATH) AT3G18810.1 (e_value=1e-96) | Symbol: None | protein kinase family protein, contains Pfam PF00069: Protein kinase domain | chr3:6480707-6483599 REVERSE | Aliases: MVE11.19; (*SWP) sp|Q94F62|BAK1_ARATH (e_value=3e-49) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1; Solyc01g109530.2.1 genomic_reference:SL2.40ch01 gene_region:88214662-88219013 transcript_region:SL2.40ch01:88214662..88219013+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK" 3 7 15 20 opLeV0100000502 sgn|U213469 ATTTGCGTCTCGTTTTGAGTACACAGACAATGTCCAACCCACAGAGACGAGTTCTGGAGGCTCTCGCGTT Experimental SGN-U582608 Tomato 200607#2 [47 ESTs aligned] (*GB) gi|157341951|emb|CAO63407.1| (e_value=2e-138) unnamed; (*ATH) AT5G46750.1 (e_value=8e-127) | Symbol: None | human Rev interacting-like family protein / hRIP family protein, contains Pfam profile PF01412: Putative GTP-ase activating protein for Arf | chr5:18987005-18989136 REVERSE | Aliases: MZA15.17, MZA15_17; (*SWP) sp|Q8H100|AGD8_ARATH (e_value=4e-125) Probable GTPase-activating protein 8 OS=Arabidopsis thaliana GN=AGD8; Solyc08g076920.2.1 genomic_reference:SL2.40ch08 gene_region:58003389-58009953 transcript_region:SL2.40ch08:58003389..58009953- go_terms:GO:0008060,GO:0003677 functional_description:"ADP-ribosylation factor GTPase-activating protein 3 (AHRD V1 **** B6TII3_MAIZE); contains Interpro domain(s) IPR001164 Arf GTPase activating protein " 3 5 15 20 opLeV0100000503 sgn|U230854 CTAAAAGATGGGTCTCTGCACATCTATTATCCACGGTGCTGACAGAGGAGGCAGTTGAACTATTGGTTTC Experimental SGN-U573389 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157348130|emb|CAO22840.1| (e_value=9e-73) unnamed; (*ATH) AT1G63810.1 (e_value=8e-66) Symbol: None | nucleolar RNA-associated family protein / Nrap family protein, contains Pfam profile PF03813: Nrap protein; similar to nucleolar RNA-associated protein alpha (GI:18539461) (Mus musculus) | chr1:23673215-23679223 REVERSE | Aliases: T12... ; (*SWP) sp|Q8R5K4|NOL6_MOUSE (e_value=8e-26) Nucleolar protein 6 OS=Mus musculus GN=Nol6; Solyc02g085230.2.1 genomic_reference:SL2.40ch02 gene_region:42772382-42784801 transcript_region:SL2.40ch02:42772382..42784801- functional_description:"Nucleolar protein 6 (AHRD V1 ***- B0WP83_CULQU); contains Interpro domain(s) IPR005554 Nrap protein " 3 3 15 20 opLeV0100000504 sgn|U235141 TATACTGGGCGCTGTATTGAGAACGTTTGATATGCTACCACCACTAGCAC Experimental SGN-U588807 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157355654|emb|CAO49471.1| (e_value=7e-48) unnamed; (*ATH) AT5G52540.1 (e_value=9e-47) | Symbol: None | expressed protein, contains PF05684: Protein of unknown function (DUF819) | chr5:21338654-21341006 REVERSE | Aliases: F6N7.1, F6N7_1; Solyc07g007970.2.1 genomic_reference:SL2.40ch07 gene_region:2660220-2667792 transcript_region:SL2.40ch07:2660220..2667792+ functional_description:"Conserved membrane protein YjcL (AHRD V1 **-- D1Y6F9_9BACT); contains Interpro domain(s) IPR008537 Protein of unknown function DUF819 " 3 1 15 20 opLeV0100000505 sgn|U214371 TGTTGGACTCGCTGCAAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGGAAGAGATATAGCTTG Experimental SGN-U594382 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15485610|emb|CAC67407.1| (e_value=2e-44) Clp protease 2 proteolytic subunit [Lycopersicon esculentum]; (*ATH) AT1G02560.1 (e_value=4e-43) Symbol: None | ATP-dependent Clp protease proteolytic subunit (ClpP1), identical to nClpP1 GB:BAA82065 GI:5360579 from (Arabidopsis thaliana); contains Pfam profile PF00574: Clp protease; contains TIGRfam profile TIGR00493: ATP-dependent Clp proteas... ; (*SWP) sp|Q9S834|CLPP5_ARATH (e_value=4e-42) ATP-dependent Clp protease proteolytic subunit 5, chloroplastic OS=Arabidopsis thaliana GN=CLPP5; Solyc01g100520.2.1 genomic_reference:SL2.40ch01 gene_region:82287668-82292399 transcript_region:SL2.40ch01:82287668..82292399- go_terms:GO:0006508 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 ***- Q93YH0_SOLLC); contains Interpro domain(s) IPR018215 Peptidase S14, ClpP, active site " 3 7 19 20 opLeV0100000506 sgn|U219820 AATTGGGGATCTACAAGGTTTTGGCTATTCCAACAGCGATGTTCGCGCATATCTTGGGGCTCTATCCATT Experimental SGN-U584213 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|118482491|gb|ABK93168.1| (e_value=1e-88) unknown; (*ATH) AT1G01630.1 (e_value=2e-90) Symbol: None | SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative, contains Pfam PF00650 : CRAL/TRIO domain and PF03765 : CRAL/TRIO, N-terminus; similar to polyphosphoinositide binding protein Ssh2p GB:AAB94599 GI:2739046... ; (*SWP) sp|Q9UU99|YJX4_SCHPO (e_value=5e-16) Uncharacterized protein C23B6.04c OS=Schizosaccharomyces pombe GN=SPCC23B6.04c; Solyc03g118150.2.1 genomic_reference:SL2.40ch03 gene_region:61156088-61158567 transcript_region:SL2.40ch03:61156088..61158567+ go_terms:GO:0008526 functional_description:"Sec14-like (Fragment) (AHRD V1 **-- Q6R655_MELLI); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal " 3 1 19 20 opLeV0100000507 sgn|U216186 CAGTGTCAGAGGGTATAGAGGTCATAAGTCTGAGCAGATCAGGGCGTCCCTCTAAATCAGACTCATGGGT Experimental SGN-U581717 Tomato 200607#2 [38 ESTs aligned] (*GB) gi|115458198|ref|NP_001052699.1| (e_value=5e-98) Os04g0403500; (*ATH) AT1G32220.1 (e_value=5e-95) | Symbol: None | expressed protein | chr1:11607881-11609713 FORWARD | Aliases: F3C3.2, F3C3_2; (*SWP) sp|Q9FVR6|Y1222_ARATH (e_value=4e-94) Uncharacterized protein At1g32220, chloroplastic OS=Arabidopsis thaliana GN=At1g32220; Solyc08g076450.2.1 genomic_reference:SL2.40ch08 gene_region:57621720-57626642 transcript_region:SL2.40ch08:57621720..57626642- go_terms:GO:0044237,GO:0008152 functional_description:"3-beta hydroxysteroid dehydrogenase/isomerase family protein (AHRD V1 **-- B6TV09_MAIZE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain " 3 7 3 19 opLeV0100000508 sgn|U221405 AGCTGAAGAAGCAGCCGAACAAGCAACTCTGGCCCCTCTAATTGGGTCGTCAATTCAATCTGCAACTGGG Experimental SGN-U566680 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|47156057|gb|AAT11924.1| (e_value=5e-173) plastid-dividing ring protein [Solanum tuberosum]; (*ATH) AT5G55280.1 (e_value=3e-142) Symbol: None | cell division protein FtsZ, chloroplast, putative (FTSZ), identical to SP:Q42545 Cell division protein ftsZ homolog, chloroplast precursor {Arabidopsis thaliana}; similar to FtsZ1 (Tagetes erecta) GI:8896066; contains Pfam profiles PF... ; (*SWP) sp|Q42545|FTSZ_ARATH (e_value=2e-141) Cell division protein ftsZ homolog, chloroplastic OS=Arabidopsis thaliana GN=FTSZ; Solyc07g065050.2.1 genomic_reference:SL2.40ch07 gene_region:64198682-64205046 transcript_region:SL2.40ch07:64198682..64205046- go_terms:GO:0042802 functional_description:"Cell division protein ftsZ (AHRD V1 ***- B6TH29_MAIZE); contains Interpro domain(s) IPR000158 Cell division protein FtsZ, N-terminal " 3 5 3 19 opLeV0100000509 sgn|U212677 AGACCCTTACCGGGAAAACCATCACCCTGGAGGTTGAGAGCTCCGACACC Experimental SGN-U591127 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|110736490|dbj|BAF00213.1| (e_value=6e-88) polyubiquitin; (*ATH) AT5G03240.3 (e_value=7e-90) Symbol: None | similar to polyubiquitin (UBQ10) (SEN3) [Arabidopsis thaliana] (TAIR:At4g05320.2); similar to polyubiquitin (UBQ10) (SEN3) [Arabidopsis thaliana] (TAIR:At4g05320.4); similar to polyubiquitin (UBQ10) (SEN3) [Arabidopsis thaliana] (TAIR... ; (*SWP) sp|P69318|UBIQ_SOLLC (e_value=4e-36) Ubiquitin OS=Solanum lycopersicum GN=UBI3; Solyc07g064130.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:63629717-63631090 transcript_region:SL2.40ch07:63629717..63631090+ go_terms:GO:0031386,GO:0043008 functional_description:"Ubiquitin (AHRD V1 ***- Q39257_PEA); contains Interpro domain(s) IPR019956 Ubiquitin subgroup " 3 3 3 19 opLeV0100000510 sgn|U221638 TCAGAATATCATGCAGTGCTTGGTCATCTTGCAATAAATAGTTTGACGCTGAATTCCGGCTTCCCACCAT Experimental SGN-U583307 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|157351244|emb|CAO41431.1| (e_value=0) unnamed; (*ATH) AT5G05460.1 (e_value=0) Symbol: None | similar to glycosyl hydrolase family 85 protein [Arabidopsis thaliana] (TAIR:At3g11040.1); similar to PREDICTED: similar to RIKEN cDNA D230014K01 [Rattus norvegicus] (GB:XP_221141.2); contains InterPro domain Glycoside hydrolase, fami... ; (*SWP) sp|Q8BX80|ENASE_MOUSE (e_value=4e-83) Cytosolic endo-beta-N-acetylglucosaminidase OS=Mus musculus; Solyc06g050930.2.1 genomic_reference:SL2.40ch06 gene_region:30372371-30381431 transcript_region:SL2.40ch06:30372371..30381431+ go_terms:GO:0005737 functional_description:"Endo beta n-acetylglucosaminidase (AHRD V1 *-*- Q16SQ0_AEDAE); contains Interpro domain(s) IPR005201 Glycoside hydrolase, family 85 " 3 1 3 19 opLeV0100000511 sgn|U224792 GCACATAAGTGGTTCCTGACAAACTTTGACTGTTCCGCTCTCTGGGTCAAGACACAAGAGCTGACCTGAA Experimental SGN-U569134 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|30680963|ref|NP_849999.1| (e_value=0) tyrosine decarboxylase -related [Arabidopsis thaliana]; (*ATH) AT2G20340.1 (e_value=0) Symbol: None | tyrosine decarboxylase, putative, similar to tyrosine/dopa decarboxylase (Papaver somniferum) GI:3282527, SP:Q06087 Tyrosine decarboxylase 3 (EC 4.1.1.25) {Petroselinum crispum}; contains Pfam profile PF00282: Pyridoxal-dependent deca... ; (*SWP) sp|Q8RY79|TYDC1_ARATH (e_value=0) Tyrosine decarboxylase 1 OS=Arabidopsis thaliana GN=ELI5; Solyc09g064430.2.1 genomic_reference:SL2.40ch09 gene_region:57250250-57257828 transcript_region:SL2.40ch09:57250250..57257828+ go_terms:GO:0004058,GO:0004398 functional_description:"Aromatic L-amino acid decarboxylase (AHRD V1 **** A6BM84_ROSDA); contains Interpro domain(s) IPR010977 Aromatic-L-amino-acid decarboxylase " 1 7 16 20 opLeV0100000512 sgn|U227129 CATCCTCTCCAGAGCTAGACAGCGCTGGAGCTCTTAGTTATGGACTGGGGAGTGCAGACTCCCTCAGCTA Experimental SGN-U572254 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147783406|emb|CAN75218.1| (e_value=2e-16) hypothetical; Solyc04g014820.2.1 genomic_reference:SL2.40ch04 gene_region:5055498-5059899 transcript_region:SL2.40ch04:5055498..5059899- go_terms:GO:0008266 functional_description:"RNA-binding protein (AHRD V1 **-* B6TAS3_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 " 1 3 16 20 opLeV0100000513 sgn|U216107 TTCACCTGCTCCAATTCAAACCCCTGCACCGTCTCCAGCTGCAGCAAAGTCAGCTGATTCATCTCTTCCT Experimental SGN-U567948 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|29169309|gb|AAO66472.1| (e_value=1e-88) biotin carboxylase carrier protein [Lycopersicon esculentum]; (*ATH) AT5G16390.1 (e_value=3e-39) | Symbol: None | biotin carboxyl carrier protein 1 (BCCP1), identical to biotin carboxyl carrier protein of acetyl-CoA carboxylase precursor (Arabidopsis thaliana) gi:9759121:dbj:BAB09606 | chr5:5360812-5363129 REVERSE | Aliases: MQK4.12, MQK4_12; (*SWP) sp|Q42533|BCCP1_ARATH (e_value=3e-38) Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=BCCP1; Solyc05g056290.2.1 genomic_reference:SL2.40ch05 gene_region:64781643-64787587 transcript_region:SL2.40ch05:64781643..64787587+ go_terms:GO:0003989 functional_description:"Acetyl-CoA carboxylase biotin carboxyl carrier protein (AHRD V1 *-** B9Z6D8_9NEIS); contains Interpro domain(s) IPR000089 Biotin/lipoyl attachment IPR001882 Biotin-binding site " 1 1 16 20 opLeV0100000514 sgn|U213556 ACAAAGCCTCCATTTTTGCAGAGAAAAGAGCAAGGTCTCTGAAGAAGAGTGTGAATTCAGAGCGGAGGCG Experimental SGN-U580487 Tomato 200607#2 [48 ESTs aligned] (*GB) gi|445612|prf||1909359A (e_value=2e-61) ribosomal protein S19; (*ATH) AT3G04920.1 (e_value=4e-61) | Symbol: None | 40S ribosomal protein S24 (RPS24A), similar to ribosomal protein S19 GB:445612 (Solanum tuberosum) and similar to ribosomal protein S24 GB:4506703 (Homo sapiens) | chr3:1360888-1362301 FORWARD | Aliases: T9J14.13, T9J14_13; (*SWP) sp|Q9SS17|RS241_ARATH (e_value=4e-60) 40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A; Solyc06g084230.2.1 genomic_reference:SL2.40ch06 gene_region:45701450-45704382 transcript_region:SL2.40ch06:45701450..45704382- go_terms:GO:0031369 functional_description:"40S ribosomal protein S24 (AHRD V1 ***- C6TAW2_SOYBN); contains Interpro domain(s) IPR001976 Ribosomal protein S24e " 1 7 20 20 opLeV0100000515 sgn|U214603 CCTAGCCACATGGTCCTCAAGGGTATAACAATGAAGCTACAATCTGGTTCAAAGGTTGCACTGGTTGGTC Experimental SGN-U571503 Tomato 200607#2 [50 ESTs aligned] (*GB) gi|157356297|emb|CAO62449.1| (e_value=0) unnamed; (*ATH) AT5G39040.1 (e_value=0) Symbol: None | ABC transporter (TAP2), TAP-like ABC transporter, Rattus norvegicus, EMBL:AB027520; identical to cDNA transporter associated with antigen processing-like protein (TAP2); GI:19335723 | chr5:15642889-15647031 FORWARD | Aliases: MXF12.50... ; (*SWP) sp|Q0WML0|TAP2_ARATH (e_value=0) Antigen peptide transporter-like 2 OS=Arabidopsis thaliana GN=TAP2; Solyc03g114950.2.1 genomic_reference:SL2.40ch03 gene_region:58864908-58870209 transcript_region:SL2.40ch03:58864908..58870209+ go_terms:GO:0042803 functional_description:"Lipid a export ATP-binding/permease protein msba (AHRD V1 ***- Q17P67_AEDAE); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region " 1 5 20 20 opLeV0100000516 sgn|U220490 TCCAACAGATGCAACATGTTTGTCCTGAATGCCGAGGCTCAGGAGAGGTTATCAGCGACAGAGACAGGTG Experimental SGN-U583295 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157344819|emb|CAO70574.1| (e_value=2e-166) unnamed; (*ATH) AT3G44110.1 (e_value=3e-148) Symbol: None | DNAJ heat shock protein, putative (J3), identical to AtJ3 (Arabidopsis thaliana) GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats... ; (*SWP) sp|P42824|DNJH2_ALLPO (e_value=5e-154) DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2; Solyc01g090550.2.1 genomic_reference:SL2.40ch01 gene_region:75967817-75971749 transcript_region:SL2.40ch01:75967817..75971749+ go_terms:GO:0006457,GO:0031072 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ " 1 3 20 20 opLeV0100000517 sgn|U229327 AAAATAATAACCATGAAATGACAGGATCCTCGCCTGTAACCGGCAGTTCAAGGATCAGGGCAGGAGAGAC Experimental SGN-U589282 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|1432058|gb|AAC49529.1| (e_value=1e-73) WRKY2; (*ATH) AT4G26640.2 (e_value=9e-60) | Symbol: None | WRKY family transcription factor, contains Pfam profile: PF03106 WRKY DNA -binding domain | chr4:13437077-13440804 REVERSE | Aliases: None; (*SWP) sp|Q93WV0|WRK20_ARATH (e_value=8e-59) Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20; Solyc07g065260.2.1 genomic_reference:SL2.40ch07 gene_region:64315902-64321013 transcript_region:SL2.40ch07:64315902..64321013+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 78 (AHRD V1 ***- Q5HZ67_ORYSA); contains Interpro domain(s) IPR003657 DNA-binding WRKY " 1 1 20 20 opLeV0100000518 sgn|U220101 GTGATGACATGAAGAAGGATGGGAATAACCAGCAAGCAGTTTGTCCTGGGTACAGCCTGACTAAAGCAAA Experimental SGN-U582431 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|147772680|emb|CAN64936.1| (e_value=2e-30) hypothetical; Solyc01g105330.2.1 genomic_reference:SL2.40ch01 gene_region:85291500-85296505 transcript_region:SL2.40ch01:85291500..85296505- go_terms:GO:0003677,GO:0005622 functional_description:"Methyl binding domain protein (AHRD V1 *-*- B9GUW9_POPTR); contains Interpro domain(s) IPR016177 DNA-binding, integrase-type " 1 7 4 19 opLeV0100000519 sgn|U215629 AGCTACTATATTCGACTGTTGGCTGTACCTGTAATTCTGCTCAAACACTCATGAATGATGCTGTTTAGCC Experimental SGN-U579485 Tomato 200607#2 [53 ESTs aligned] (*GB) gi|132104|sp|P07180|RBS3A_SOLLC (e_value=1e-52) RecName:; (*ATH) AT3G49910.1 (e_value=4e-45) | Symbol: None | 60S ribosomal protein L26 (RPL26A), 60S RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495 | chr3:18515241-18515952 FORWARD | Aliases: F3A4.4; (*SWP) sp|P07180|RBS3A_SOLLC (e_value=9e-54) Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C; \N \N 1 5 4 19 opLeV0100000520 sgn|U240222 GGCTGGGGTAGGCCTATTGTCGAGGCAATGGCAATGACTCTGCCAGTGATTGCTACGAATTGGTCAGGAC Experimental SGN-U603231 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157356251|emb|CAO62386.1| (e_value=3e-56) unnamed; (*ATH) AT3G10630.1 (e_value=2e-55) Symbol: None | glycosyl transferase family 1 protein, contains Pfam glycosyl transferase, group 1 family protein domain PF00534; C-terminal portion similar to mannosyltransferase GB:BAA28328 (Escherichia coli) | chr3:3321468-3323216 REVERSE | Aliase... ; Solyc11g006560.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1204280-1205734 transcript_region:SL2.40ch11:1204280..1205734+ go_terms:GO:0009058 functional_description:"Glycosyl transferase group 1 (AHRD V1 ***- B6T775_MAIZE); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 " 1 3 4 19 opLeV0100000521 sgn|U229754 CTGGACCATCCCAATGTCATCAAACTTGAAGGTTTGGTGACTTCGAGAATGTCGTCTAGTTTGTACCTTG Experimental SGN-U584598 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|118483184|gb|ABK93496.1| (e_value=6e-58) unknown; (*ATH) AT1G54610.1 (e_value=7e-56) | Symbol: None | protein kinase family protein, contains Pfam domain, PF00069: Protein kinase domain | chr1:20397429-20400853 REVERSE | Aliases: T22H22.5, T22H22_5; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=5e-55) Putative serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610; Solyc03g097690.2.1 genomic_reference:SL2.40ch03 gene_region:53463305-53469205 transcript_region:SL2.40ch03:53463305..53469205- go_terms:GO:0004693 functional_description:"Cell division protein kinase 12 (AHRD V1 *-** CDK12_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 1 1 4 19 opLeV0100000522 sgn|U226706 GCACAAGCATTTGACGCATCCTTCCATCACAATCTTCAGCTAGTTTCTCCTGCAGAAGAGTTTAGTAACA Experimental SGN-U569291 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157355889|emb|CAO49746.1| (e_value=5e-71) unnamed; (*ATH) AT4G25370.1 (e_value=2e-59) | Symbol: None | Clp amino terminal domain-containing protein, contains Pfam profile: PF02861 Clp amino terminal domain | chr4:12972718-12974880 FORWARD | Aliases: T30C3.40, T30C3_40; (*SWP) sp|P31541|CLPAA_SOLLC (e_value=2e-12) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A; Solyc03g007110.2.1 genomic_reference:SL2.40ch03 gene_region:1704206-1709141 transcript_region:SL2.40ch03:1704206..1709141- go_terms:GO:0019538 functional_description:"ATP-dependent Clp protease ATP-binding subunit ClpC (AHRD V1 *-*- D6KVC7_SCAIO); contains Interpro domain(s) IPR004176 Clp, N-terminal " 3 7 16 20 opLeV0100000523 sgn|U214557 ATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTATGGATCAGGGAAGAAAACTGC Experimental SGN-U593200 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15231733|ref|NP_191528.1| (e_value=8e-33) expressed protein [Arabidopsis thaliana]; (*ATH) AT3G59690.1 (e_value=6e-35) | Symbol: None | calmodulin-binding family protein, similar to SF16 protein (Helianthus annuus) GI:560150; contains Pfam profile PF00612: IQ calmodulin-binding motif | chr3:22059731-22062650 FORWARD | Aliases: T16L24.240; (*SWP) sp|Q8LPG9|IQD14_ARATH (e_value=1e-25) Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14; Solyc06g053450.2.1 genomic_reference:SL2.40ch06 gene_region:32744659-32751251 transcript_region:SL2.40ch06:32744659..32751251+ go_terms:GO:0005516 functional_description:"IQ-domain 10 (Fragment) (AHRD V1 *--- D7L3Y4_ARALY); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region " 3 5 16 20 opLeV0100000524 sgn|U222044 AGCATCAGCATCGAGGAAGGCATCGACTGGTACATCCATATTTCCTTCTGAGTATGGTGTCTGATAGAAC Experimental SGN-U577407 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|30961941|gb|AAP40022.1| (e_value=1e-106) C-repeat/DRE-binding factor [Nicotiana tabacum]; (*ATH) AT1G53910.1 (e_value=5e-53) Symbol: RAP2.12 | encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.12). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. | chr1:... ; (*SWP) sp|Q9SSA8|RA212_ARATH (e_value=5e-52) Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12; Solyc12g049560.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46647808-46650026 transcript_region:SL2.40ch12:46647808..46650026- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 ***- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding " 3 3 16 20 opLeV0100000525 sgn|U222678 GGGGTTTCCAAAAAATGGAGCCTGCAAATTTGGGTAATTTGAGAGGTAGTAGTTTAAGAGGAAGTATAAG Experimental SGN-U583818 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|20522008|dbj|BAB92011.1| (e_value=2e-43) pleiotropic drug resistance like protein [Nicotiana tabacum]; (*ATH) AT1G15520.1 (e_value=4e-27) Symbol: PDR12 | ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots. | chr1:5331988-5338170 REVERSE | Aliases: T16N11.3, T16N11_3, PDR12, PLEIO... ; (*SWP) sp|Q76CU2|PDR1_TOBAC (e_value=1e-44) Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1; Solyc09g091660.2.1 genomic_reference:SL2.40ch09 gene_region:66255162-66263653 transcript_region:SL2.40ch09:66255162..66263653+ go_terms:GO:0042626 functional_description:"ABC transporter G family member 40 (AHRD V1 ***- AB40G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter " 3 1 16 20 opLeV0100000526 sgn|U213015 TGGAAGGCCTTGAACCAGGGCTTATACTCCTACTAAGCATAGCCAGACATTGACATTTAGCAGGTATCCA Experimental SGN-U579368 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157335508|emb|CAO61338.1| (e_value=8e-58) unnamed; (*ATH) AT1G45474.2 (e_value=7e-54) Symbol: None | chlorophyll A-B binding protein, putative (LHCA5), identical to Lhca5 protein (Arabidopsis thaliana) GI:4741942; contains Pfam profile: PF00504 chlorophyll A-B binding protein; similar to light-harvesting complex protein GI:22752 from... ; (*SWP) sp|P10708|CB12_SOLLC (e_value=1e-18) Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7; \N \N 3 7 20 20 opLeV0100000527 sgn|U217183 TCGTAGGAACCGACCGAGTCCTGATTATGGCCGACCTCGGAGTCCTGTTCATAATGGTCCATCATATGAC Experimental SGN-U568642 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|157327144|emb|CAO14416.1| (e_value=2e-80) unnamed; (*ATH) AT3G61860.1 (e_value=8e-79) | Symbol: None | arginine/serine-rich splicing factor RSP31 (RSP31), identical to SP:P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} | chr3:22911047-22913309 REVERSE | Aliases: F21F14.30; (*SWP) sp|P92964|RSP31_ARATH (e_value=7e-78) Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana GN=RSP31; Solyc10g009330.2.1 genomic_reference:SL2.40ch10 gene_region:3406871-3409405 transcript_region:SL2.40ch10:3406871..3409405+ go_terms:GO:0005515 functional_description:"Arginine/serine-rich splicing factor 31 (AHRD V1 ***- D7LSQ1_ARALY); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 " 3 5 20 20 opLeV0100000528 sgn|U217945 GGCTCCAGCTAAAGTGGACTTAACAAAAAAGAAAGACCCCAAAGCCCAGGCTGTCAAGGCTGCCAAGGCT Experimental SGN-U577327 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|585876|sp|Q07761|RL23A_TOBAC (e_value=3e-46) 60S ribosomal protein L23a (L25); (*ATH) AT3G55280.2 (e_value=3e-44) |; (*SWP) sp|Q07761|RL23A_TOBAC (e_value=2e-47) 60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A; Solyc10g086330.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64518706-64520781 transcript_region:SL2.40ch10:64518706..64520781+ go_terms:GO:0005840,GO:0000166 functional_description:"60S ribosomal protein L23a (AHRD V1 ***- B6TN30_MAIZE); contains Interpro domain(s) IPR019985 Ribosomal protein L23 " 3 3 20 20 opLeV0100000529 sgn|U236353 TGTCAGGAGTGGTTCCACCTCCAGTTTGTAGAAATTTTCAGCAAAATGGAACTAATGCATCTGTGGCTGG Experimental SGN-U595863 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|149941647|dbj|BAF64845.1| (e_value=9e-65) Cdc27B; (*ATH) AT2G20000.1 (e_value=9e-37) Symbol: None | cell division cycle family protein / CDC family protein, low similarity to SP:P30260:CC27_HUMAN Protein CDC27Hs (Cell division cycle protein 27 homolog) Homo sapiens; contains Pfam profile PF00515: TPR Domain | chr2:8639162-8644381 RE... ; Solyc03g061600.2.1 genomic_reference:SL2.40ch03 gene_region:27838220-27847083 transcript_region:SL2.40ch03:27838220..27847083+ go_terms:GO:0005515 functional_description:"Cell division cycle protein 27/anaphase promoting complex subunit 3 (AHRD V1 *--- A8NH71_COPC7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical " 3 1 20 20 opLeV0100000530 sgn|U213898 GGGAGTCAAAAGAAGGGTGGATGGAACTCGGGTAAATGGATTGATACGGG Experimental SGN-U580291 Tomato 200607#2 [12 ESTs aligned] \N \N 3 7 4 19 opLeV0100000531 sgn|U217142 CCAAGCAGTAGCATTTCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAA Experimental SGN-U564773 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|118481033|gb|ABK92470.1| (e_value=0) unknown; (*ATH) AT3G43270.1 (e_value=4e-170) | Symbol: None | pectinesterase family protein, contains Pfam profile: PF01095 pectinesterase | chr3:15233113-15236448 REVERSE | Aliases: F7K15.120; (*SWP) sp|Q43062|PME_PRUPE (e_value=2e-177) Pectinesterase PPE8B OS=Prunus persica; Solyc07g017600.2.1 genomic_reference:SL2.40ch07 gene_region:7622116-7627390 transcript_region:SL2.40ch07:7622116..7627390+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- A9P7W7_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic " 3 5 4 19 opLeV0100000532 sgn|U221518 GTCATAACCCTTCTTATTGCCGTCTTTTGGCCCACGAGTGGGGTGCTCTTTCCAAACTATCTTGATGGAT Experimental SGN-U581096 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|157359763|emb|CAO68485.1| (e_value=5e-161) unnamed; (*ATH) AT1G53710.1 (e_value=2e-153) Symbol: None | similar to putative cell division control protein [Oryza sativa (japonica cultivar-group)] (GB:XP_470871.1); contains InterPro domain Metallo-phosphoesterase (InterPro:IPR004843) | chr1:20056829-20060064 REVERSE | Aliases: F22G10.25, ... ; (*SWP) sp|Q9UUH0|YKIC_SCHPO (e_value=6e-33) Uncharacterized protein C630.12 OS=Schizosaccharomyces pombe GN=SPAC630.12; Solyc12g055740.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47085573-47090460 transcript_region:SL2.40ch12:47085573..47090460- go_terms:GO:0016787 functional_description:"Serine/threonine phosphatase-like protein (Fragment) (AHRD V1 *--- B2ZLM8_HELPE); contains Interpro domain(s) IPR004843 Metallophosphoesterase " 3 3 4 19 opLeV0100000533 sgn|U240362 GGTGGTGCTCCGATGTACCATCCACGTACTTCTATAGTCCCTGCATCTGGATCGATCATAGCGTTTCCAC Experimental SGN-U591289 Tomato 200607#2 [1 ESTs aligned] Solyc11g012870.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5656257-5659159 transcript_region:SL2.40ch11:5656257..5659159- go_terms:GO:0006508,GO:0016998 functional_description:"LysM domain containing protein (AHRD V1 *-*- Q2R2V0_ORYSJ); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup " 3 1 4 19 opLeV0100000534 sgn|U213788 ACGAAGTGAAGCTTCACAGGGCGGTATGCAGAAGTATGCTACTAATAGTACTCAGGGCCCTGATTTTCAG Experimental SGN-U563386 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|18076583|emb|CAC84552.1| (e_value=4e-97) putative receptor-like serine-threonine protein kinase [Solanum tuberosum]; (*ATH) AT4G38830.1 (e_value=2e-57) | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:18122320-18124937 FORWARD | Aliases: T9A14.110, T9A14_110; (*SWP) sp|Q9T0J1|CRK26_ARATH (e_value=2e-56) Cysteine-rich receptor-like protein kinase 26 OS=Arabidopsis thaliana GN=CRK26; Solyc02g080050.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:38954378-38954839 transcript_region:SL2.40ch02:38954378..38954839- functional_description:"Cysteine-rich receptor-like protein kinase (AHRD V1 ***- C6ZRS1_SOYBN); contains Interpro domain(s) IPR002902 Protein of unknown function DUF26 " 2 5 13 20 opLeV0100000535 sgn|U218430 CTTGTTACGAAGAAGTCTTTAAGATTGCCGGTCTCAGATGGTCGAATGGACTATCGCACTTCTGCTGGTC Experimental SGN-U567420 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|124359198|gb|ABD32200.2| (e_value=2e-112) hypothetical; (*ATH) AT5G51200.1 (e_value=1e-107) | Symbol: None | expressed protein | chr5:20822152-20836818 FORWARD | Aliases: MWD22.15, MWD22_15; Solyc12g006480.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:969890-999838 transcript_region:SL2.40ch12:969890..999838- functional_description:"Nup205 protein (Fragment) (AHRD V1 ***- Q6PDG0_MOUSE)" 2 3 13 20 opLeV0100000536 sgn|U223156 TCAAGGCCTTGACTGGCCTTCCACCGTACATGGGTATGCTGCTTGGACTGGGAGTTCTTTGGATAATCAC Experimental SGN-U565758 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|38145480|emb|CAD91128.1| (e_value=2e-90) Na+/H+ antiporter precursor [Populus euphratica]; (*ATH) AT3G19490.1 (e_value=2e-91) | Symbol: None | sodium hydrogen antiporter, putative, similar to NhaD (Vibrio parahaemolyticus) gi:3123728:dbj:BAA25994; Na+/H+ aniporter (NhaD) family member, PMID:11500563 | chr3:6754122-6758267 REVERSE | Aliases: MLD14.23; Solyc11g044540.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35907027-35917923 transcript_region:SL2.40ch11:35907027..35917923- go_terms:GO:0016021 functional_description:"Na+/H+ antiporter NhaD (AHRD V1 ***- A4VP01_PSEU5); contains Interpro domain(s) IPR018390 Na+/H+ antiporter NhaD-like " 2 1 13 20 opLeV0100000537 sgn|U223442 ATCGATCAGTGCACTAAATATCTCGCTATATGCACGGAATTCGAGAAGGGAAGAGAAGATCTAGCAAATC Experimental SGN-U569018 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|20149050|gb|AAM12780.1| (e_value=6e-35) auxin-induced SAUR-like protein [Capsicum annuum]; (*ATH) AT4G34760.1 (e_value=2e-26) | Symbol: None | auxin-responsive family protein, auxin-induced protein X15, Glycine max, PIR2:JQ1097 | chr4:16582188-16582884 REVERSE | Aliases: F11I11.11; (*SWP) sp|P33080|AX10A_SOYBN (e_value=5e-15) Auxin-induced protein X10A OS=Glycine max; \N \N 2 7 17 20 opLeV0100000538 sgn|U220172 GATATAGCAATTCAGAAGAGGAGCCAAGAGCACCTCTCTTGGACTCTTATGCATGAAACACAAAACTCTC Experimental SGN-U568580 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157360660|emb|CAO70253.1| (e_value=3e-79) unnamed; (*ATH) AT3G14770.1 (e_value=8e-67) | Symbol: None | nodulin MtN3 family protein, similar to MtN3 GI:1619602 (root nodule development) from (Medicago truncatula) | chr3:4957363-4959709 REVERSE | Aliases: T21E2.6; (*SWP) sp|Q8LFH5|RPG1_ARATH (e_value=8e-33) Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1; Solyc02g071520.2.1 genomic_reference:SL2.40ch02 gene_region:35495695-35498922 transcript_region:SL2.40ch02:35495695..35498922- go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_DICDI); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue " 2 5 17 20 opLeV0100000539 sgn|U221247 ATCTTCACATGCAGATGATCAGTACTTGCAAGCCTCCACTGGTGTACAGCATTGGCATGGTTCTCCAAGG Experimental SGN-U583340 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157347542|emb|CAO18179.1| (e_value=5e-97) unnamed; (*ATH) AT5G04250.1 (e_value=8e-73) | Symbol: None | OTU-like cysteine protease family protein, contains Pfam profile PF02338: OTU-like cysteine protease | chr5:1176014-1178919 FORWARD | Aliases: T19N18.9; Solyc09g008020.2.1 genomic_reference:SL2.40ch09 gene_region:1499865-1504313 transcript_region:SL2.40ch09:1499865..1504313+ go_terms:GO:0008234 functional_description:"Cysteine-type peptidase (AHRD V1 **** B6T6Y3_MAIZE); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain " 2 3 17 20 opLeV0100000540 sgn|U217428 TAGCAAGGAACATCACGTTTTAGAGATTGGATTTGGTTGGGGAGGTTTTGCTGTGGAAGTTGTCAACCAA Experimental SGN-U580854 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157336772|emb|CAO71457.1| (e_value=1e-65) unnamed; (*ATH) AT3G23510.1 (e_value=2e-65) Symbol: None | cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative, similar to cyclopropane synthase (Sterculia foetida) GI:21069167; contains Pfam profile PF02353: Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8427667-8433... ; (*SWP) sp|P31049|YLP3_PSEPU (e_value=1e-12) Uncharacterized methyltransferase in lpd-3 5'region OS=Pseudomonas putida; Solyc04g056450.2.1 genomic_reference:SL2.40ch04 gene_region:53362710-53369742 transcript_region:SL2.40ch04:53362710..53369742+ go_terms:GO:0008610 functional_description:"Cyclopropane-fatty-acyl-phospholipid synthase (AHRD V1 ***- C7LRK7_DESBD); contains Interpro domain(s) IPR003333 Cyclopropane-fatty-acyl-phospholipid synthase " 2 1 17 20 opLeV0100000541 sgn|U233559 TAAATATGTAATGAAAGGAGGTAGGGCAGATACCCTAAGAGCAGGAACCTGTGCCGTCTCCTTTCTGATT Experimental SGN-U594254 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157354129|emb|CAO46696.1| (e_value=7e-20) unnamed; (*ATH) AT5G14310.1 (e_value=2e-20) | Symbol: None | expressed protein, low similarity to PrMC3 (Pinus radiata) GI:5487873 | chr5:4615321-4617618 FORWARD | Aliases: F18O22.100, F18O22_100; Solyc05g014320.2.1 genomic_reference:SL2.40ch05 gene_region:8154699-8157508 transcript_region:SL2.40ch05:8154699..8157508- go_terms:GO:0008152 functional_description:"Acetyl esterase (AHRD V1 *--- AES_SHIFL); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 " 2 7 1 19 opLeV0100000542 sgn|U212773 GAGGGGCTTGACTGGCTCTCAAACAACATTGCAAACAAGGGTTGAACACGAGATCCATGATTTTTGCAGC Experimental SGN-U593633 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|76160984|gb|ABA40455.1| (e_value=9e-88) ARF-like small GTPase-like protein [Solanum tuberosum]; (*ATH) AT3G62290.1 (e_value=7e-89) Symbol: None | Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role i... ; (*SWP) sp|P36397|ARF1_ARATH (e_value=1e-87) ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1; Solyc01g100870.2.1 genomic_reference:SL2.40ch01 gene_region:82530325-82533925 transcript_region:SL2.40ch01:82530325..82533925- go_terms:GO:0005525 functional_description:"ADP-ribosylation factor (AHRD V1 ***- Q9M7P4_CAPAN); contains Interpro domain(s) IPR006688 ADP-ribosylation factor " 2 5 1 19 opLeV0100000543 sgn|U217073 CACACAGCCCATAATCAGTCCTACAAAGCACACAGGAATGGAATCAAGAAACCCAGGAAGCATCGTCACA Experimental SGN-U578260 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|12231298|gb|AAG49033.1| (e_value=3e-24) ripening regulated protein DDTFR19 [Lycopersicon esculentum]; (*ATH) AT3G06680.1 (e_value=1e-23) | Symbol: None | 60S ribosomal protein L29 (RPL29B), similar to 60S ribosomal protein L29 GB:P25886 from (Rattus norvegicus) | chr3:2114408-2114885 REVERSE | Aliases: T8E24.9; (*SWP) sp|Q84WM0|RL292_ARATH (e_value=3e-22) 60S ribosomal protein L29-2 OS=Arabidopsis thaliana GN=RPL29B; \N \N 2 3 1 19 opLeV0100000544 sgn|U224532 ACCAAATGAACCTCCCGTTACGAGAATGTTCACTAGTGCAGATGGGAAATGGTTAGGTGCTGTAAACTGC Experimental SGN-U576904 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|157335658|emb|CAO61488.1| (e_value=0) unnamed; (*ATH) AT4G07410.1 (e_value=0) Symbol: None | transducin family protein / WD-40 repeat family protein, contains 7 WD-40 repeats (PF00400) (2 weak); similar to Vegetatible incompatibility protein HET-E-1 (SP:Q00808) {Podospora anserina} | chr4:4201246-4205221 REVERSE | Aliases: F2... ; (*SWP) sp|Q969X6|CIR1A_HUMAN (e_value=2e-48) Cirhin OS=Homo sapiens GN=CIRH1A; Solyc12g088290.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62172387-62180578 transcript_region:SL2.40ch12:62172387..62180578+ functional_description:"U3 small nucleolar RNA-associated protein (AHRD V1 **-- B6JWV4_SCHJY); contains Interpro domain(s) IPR017986 WD40 repeat, region " 2 1 1 19 opLeV0100000545 sgn|U213120 AGCAATGGAAAGCTAACTAGTGTTGCACATCGTGTGGTGACAAACACAACTGAGTCACGAACCTCCATTG Experimental SGN-U581131 Tomato 200607#2 [214 ESTs aligned] (*GB) gi|924634|gb|AAA80501.1| (e_value=0) unknown; (*ATH) AT4G39730.1 (e_value=3e-53) | Symbol: None | lipid-associated family protein, contains PLAT/LH2 (Polycystin-1, Lipoxygenase, Alpha-Toxin/Lipoxygenase homology) domain Pfam:PF01477 | chr4:18432893-18433689 FORWARD | Aliases: T19P19.120, T19P19_120; (*SWP) sp|P24397|HY6H_HYONI (e_value=1e-72) Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H; Solyc07g043420.2.1 genomic_reference:SL2.40ch07 gene_region:54503345-54505070 transcript_region:SL2.40ch07:54503345..54505070+ go_terms:GO:0010302,GO:0045431 functional_description:"2-oxoglutarate-dependent dioxygenase (AHRD V1 **-* Q9ZSH4_SOLCH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase " 4 7 13 20 opLeV0100000546 sgn|U240527 TCCTATCTTCTGGACATATAGCAGTTTCATTCGTCACTCCTCCAATGCTGCTGTGTTCCCATTTGTGATC Experimental SGN-U563439 Tomato 200607#2 [4 ESTs aligned] Solyc06g083250.2.1 genomic_reference:SL2.40ch06 gene_region:45034667-45036788 transcript_region:SL2.40ch06:45034667..45036788+ functional_description:"Unknown Protein (AHRD V1)" 4 5 13 20 opLeV0100000547 sgn|U218629 TTGAGCTTGTAAAACTTGAGCAAAGTTTACCGGGAATGGTTCGGTTCACCGCGGATCTTCCTTGGTCTAA Experimental SGN-U568161 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|157340639|emb|CAO47444.1| (e_value=0) unnamed; (*ATH) AT4G38470.1 (e_value=0) | Symbol: None | protein kinase family protein, similar to protein kinase (gi:170047) from Glycine max; contains Pfam protein kinase domain PF00069 | chr4:17999426-18003675 FORWARD | Aliases: F20M13.30, F20M13_30; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=1e-65) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1; \N \N 4 3 13 20 opLeV0100000548 sgn|U218886 GTGCACTTGATGATGCTGCAGTGACTGAGGCCTTAGAGCTGCACAAGATTAAAAGTAGGCAGTGGGCTAT Experimental SGN-U583369 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157352289|emb|CAO43317.1| (e_value=1e-88) unnamed; (*ATH) AT2G24765.1 (e_value=1e-88) | Symbol: None | ADP-ribosylation factor 3 (ARF3), identical to GP:453191 ADP-ribosylation factor 3 {Arabidopsis thaliana}; contains domain PF00025: ADP-ribosylation factor family | chr2:10569805-10572274 FORWARD | Aliases: F27A10.8; (*SWP) sp|Q96361|ARF1_BRARP (e_value=9e-88) ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1; Solyc07g006640.2.1 genomic_reference:SL2.40ch07 gene_region:1506417-1517122 transcript_region:SL2.40ch07:1506417..1517122+ go_terms:GO:0005525,GO:0005622 functional_description:"ADP-ribosylation factor 3 (AHRD V1 ***- B4FM64_MAIZE); contains Interpro domain(s) IPR006688 ADP-ribosylation factor " 4 1 13 20 opLeV0100000549 sgn|U226837 AACTCTCGTAAGATAAATAATAATCGCCATCGCGTTCGTGACAACTCTACCGTGGATTTTAACATGGAGG Experimental SGN-U575918 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|56694219|gb|AAW22881.1| (e_value=4e-32) putative EARLY flowering 4 protein [Lycopersicon esculentum]; (*ATH) AT2G40080.1 (e_value=1e-25) | Symbol: None | expressed protein | chr2:16741372-16741990 REVERSE | Aliases: T28M21.24, T28M21_24; Solyc06g051680.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:31701425-31701796 transcript_region:SL2.40ch06:31701425..31701796- functional_description:"ELF4-like protein (AHRD V1 ***- C6ZKH9_IPONI); contains Interpro domain(s) IPR009741 Protein of unknown function DUF1313 " 4 7 17 20 opLeV0100000550 sgn|U231488 GGCTCTGAGGTGTTCTATGTTCCTCGACGTTTCGTTCAGGACTTTGTTGATCTAGTAGACTTAGTCGGTG Experimental SGN-U563963 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157350697|emb|CAO40788.1| (e_value=4e-109) unnamed; (*ATH) AT3G57420.1 (e_value=2e-103) | Symbol: None | expressed protein, contains Pfam domain PF03385: Protein of unknown function, DUF288 | chr3:21263396-21266253 REVERSE | Aliases: T8H10.20; Solyc01g087600.2.1 genomic_reference:SL2.40ch01 gene_region:74313470-74318705 transcript_region:SL2.40ch01:74313470..74318705+ functional_description:"Protein E03H4.4 partially confirmed by transcript evidence (AHRD V1 *-*- O17744_CAEEL)" 4 5 17 20 opLeV0100000551 sgn|U212723 CTGTTAGGGTTGGAGAGACCGTTGATATTGTAGGATTAAGAGACACCAGGTCTACTACCGTGACCGGGGT Experimental SGN-U578104 Tomato 200607#2 [50 ESTs aligned] (*GB) gi|68566313|sp|Q40450|EFTUA_NICSY (e_value=0) Elongation; (*ATH) AT4G20360.1 (e_value=0) | Symbol: None | elongation factor Tu / EF-Tu (TUFA), identical to SWISS-PROT:P17745 elongation factor Tu, chloroplast precursor (EF-Tu) (Arabidopsis thaliana) | chr4:10989963-10991720 FORWARD | Aliases: F9F13.10, F9F13_10; (*SWP) sp|P68158|EFTU_TOBAC (e_value=0) Elongation factor Tu, chloroplastic OS=Nicotiana tabacum GN=TUFA; Solyc03g112150.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:56698575-56700008 transcript_region:SL2.40ch03:56698575..56700008+ go_terms:GO:0003746 functional_description:"Elongation factor Tu (AHRD V1 **** D7MFK2_ARALY); contains Interpro domain(s) IPR004541 Translation elongation factor EFTu/EF1A, bacterial and organelle " 4 3 17 20 opLeV0100000552 sgn|U215319 CATGTTTCTCACTTAATTGTGCAGTTCAAGTTGTGGGGTTGGCTCCTGGT Experimental SGN-U568912 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|45544873|gb|AAS67372.1| (e_value=7e-35) CONSTANS; \N \N 4 1 17 20 opLeV0100000553 sgn|U222655 AGGAAAAAAGGTTAGTGACATTCAAGGCATTTGAAGGTCATTTGATAGAGGAATACAAGGCCTTCAAAGC Experimental SGN-U572546 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|197725474|gb|ACH72969.1| (e_value=5e-39) major; (*ATH) AT1G70850.3 (e_value=1e-32) Symbol: None | similar to Bet v I allergen family protein [Arabidopsis thaliana] (TAIR:At1g70830.1); similar to Bet v I allergen family protein [Arabidopsis thaliana] (TAIR:At1g70830.2); similar to Csf-2 [Cucumis sativus] (GB:BAA83470.1); contains I... ; (*SWP) sp|Q9SSK7|MLP34_ARATH (e_value=1e-31) MLP-like protein 34 OS=Arabidopsis thaliana GN=MLP34; Solyc09g005500.2.1 genomic_reference:SL2.40ch09 gene_region:339412-340474 transcript_region:SL2.40ch09:339412..340474+ go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen " 4 7 1 19 opLeV0100000554 sgn|U234306 GCACCGGTGGTGGAGCTGTCGGTGCCTCACCACTTGTAACCTCCTTGAATCTCGCTAACGCCTTCTCTGA Experimental SGN-U562820 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|1087073|gb|AAB34987.1| (e_value=0) calmodulin-binding heat-shock protein; CaMBP [Nicotiana tabacum]; (*ATH) AT5G37710.1 (e_value=7e-149) Symbol: None | lipase class 3 family protein / calmodulin-binding heat-shock protein, putative, similar to almodulin-binding heat-shock protein, common tobacco, PIR:T04107; contains Pfam profilesPF03893: Lipase 3 N-terminal region, PF01764: Lipase |... ; Solyc11g011120.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4202087-4208795 transcript_region:SL2.40ch11:4202087..4208795+ go_terms:GO:0006629,GO:0016042 functional_description:"Calmodulin-binding heat-shock protein (AHRD V1 **-- Q41251_TOBAC); contains Interpro domain(s) IPR002921 Lipase, class 3 " 4 5 1 19 opLeV0100000555 sgn|U217443 CTGTTGGAAATATAGTTGTTGGAAAGTTAGTTTTGAACCCTGGGCTGACATGTGTCGGACAGGTGTCATG Experimental SGN-U571246 Tomato 200607#2 [16 ESTs aligned] \N \N 4 3 1 19 opLeV0100000556 sgn|U232774 TTGGCTGAGAATATATCAGTGAGGTCTGATTCCGAACGGTGCAAGTTATGAAACATTCCGTAACCATTCA Experimental SGN-U595181 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|209978913|gb|ACJ04728.1| (e_value=5e-26) WRKY; Solyc08g008280.2.1 genomic_reference:SL2.40ch08 gene_region:2704613-2706561 transcript_region:SL2.40ch08:2704613..2706561- go_terms:GO:0003700,GO:0019900 functional_description:"WRKY transcription factor-30 (AHRD V1 **** B6VB04_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY " 4 1 1 19 opLeV0100000557 sgn|U221474 ATTCAAATGGCGCTGAGGGCAATACTCAACCAAAACTTTTTTTCGTATCCAGGACTCGAACCCGAGTTAC Experimental SGN-U564225 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157344530|emb|CAO69913.1| (e_value=7e-33) unnamed; (*ATH) AT2G42760.1 (e_value=5e-17) | Symbol: None | expressed protein | chr2:17803061-17804308 REVERSE | Aliases: F7D19.24, F7D19_24; \N \N 2 7 14 20 opLeV0100000558 sgn|U220195 CCTCAGTATGTCAGCTTGCCAGTAGTAAATGGATCAGGGGGTAACAAACAAGTGGCTGGGTTCGGTCTCA Experimental SGN-U578216 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|41059804|gb|AAR99376.1| (e_value=2e-105) ring domain containing protein [Capsicum annuum]; (*ATH) AT2G39780.1 (e_value=3e-77) | Symbol: None | ribonuclease 2 (RNS2), identical to ribonuclease 2 precursor SP:P42814, GI:289210; contains a ribonuclease T2 family histidine active site signature (PDOC00459) | chr2:16598319-16600825 FORWARD | Aliases: T5I7.8, T5I7_8; (*SWP) sp|P42814|RNS2_ARATH (e_value=3e-76) Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2; \N \N 2 5 14 20 opLeV0100000559 sgn|U241238 GATGAAGAACAGTTAGCCTAAGACTTTCAAGCCCTGAAATAATTGTAGGAAGCAATCTTGGCCTCTTTTT Experimental SGN-U604517 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118481610|gb|ABK92747.1| (e_value=1e-25) unknown; (*ATH) AT1G72210.1 (e_value=6e-24) Symbol: None | basic helix-loop-helix (bHLH) family protein (bHLH096), identical to basic-helix-loop-helix transcription factor (Arabidopsis thaliana) GI:20520637; contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain; PMID: 12679534 | ... ; Solyc01g098720.2.1 genomic_reference:SL2.40ch01 gene_region:80910735-80912501 transcript_region:SL2.40ch01:80910735..80912501+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *-** D6MJZ9_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding " 2 3 14 20 opLeV0100000560 sgn|U240012 TAGACTAGTTGTGCCAAGGACCACTTCCCTCCTTAGCTTTGCTGTAAGCTTATGACAAACCCTAAGCTCA Experimental SGN-U602613 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349331|emb|CAO24477.1| (e_value=5e-37) unnamed; (*ATH) AT1G02010.1 (e_value=5e-38) Symbol: None | similar to cytokinesis-related Sec1 protein (KEULE) [Arabidopsis thaliana] (TAIR:At1g12360.1); similar to cytokinesis-related Sec1 protein, putative [Arabidopsis thaliana] (TAIR:At4g12120.1); similar to putative SNARE-interacting prot... ; (*SWP) sp|Q9C5X3|KEULE_ARATH (e_value=2e-34) SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU; Solyc01g091300.2.1 genomic_reference:SL2.40ch01 gene_region:76703040-76708743 transcript_region:SL2.40ch01:76703040..76708743+ go_terms:GO:0008565,GO:0005515 functional_description:"Sec1-4 syntaxin-binding protein (AHRD V1 **-* Q3SEP7_PARTE); contains Interpro domain(s) IPR001619 Sec1-like protein " 2 1 14 20 opLeV0100000561 sgn|U218667 ACTGTGCCACAATATAGAGTTGCAATGCAAAATTGTATATGATTTACGCAGTCAGCCCCTCTCCCCGGTG Experimental SGN-U574043 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147818682|emb|CAN76185.1| (e_value=4e-36) hypothetical; (*ATH) AT1G68020.2 (e_value=3e-37) Symbol: None | glycosyl transferase family 20 protein / trehalose-phosphatase family protein, similar to SP:Q00764 Alpha,alpha-trehalose-phosphate synthase (UDP-forming) 56 kDa subunit (EC 2.4.1.15) (Trehalose-6-phosphate synthase) {Saccharomyces ce... ; (*SWP) sp|Q94AH8|TPS6_ARATH (e_value=2e-36) Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 OS=Arabidopsis thaliana GN=TPS6; \N \N 2 7 18 20 opLeV0100000562 sgn|U214931 AAGCCTACCATCACTTCTCGTGAAATTCAAACTGCCGTTCGTCTTGTTCTTCCTGGTGAATTAGCTAAAC Experimental SGN-U581577 Tomato 200607#2 [47 ESTs aligned] (*GB) gi|157337363|emb|CAO21709.1| (e_value=8e-43) unnamed; (*ATH) AT1G07790.1 (e_value=1e-44) Symbol: None | histone H2B, putative, strong similarity to histone H2B Arabidopsis thaliana GI:2407802, Gossypium hirsutum SP:O22582, Lycopersicon esculentum GI:3021489, Capsicum annuum SP:O49118; contains Pfam profile PF00125 Core histone H2A/H2B/H... ; (*SWP) sp|Q1S9I9|H2B1_MEDTR (e_value=6e-44) Probable histone H2B.1 OS=Medicago truncatula; Solyc05g055440.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:64237122-64237565 transcript_region:SL2.40ch05:64237122..64237565- go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- Q2XPW1_SOLTU); contains Interpro domain(s) IPR000558 Histone H2B " 2 5 18 20 opLeV0100000563 sgn|U221390 AGGTCTTGGGCTCAAACCTGACCAGTTGAAAGCTACAGAATGTGCCAAAGAACAAGGGATGGCATGCCAT Experimental SGN-U579343 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157336681|emb|CAO71366.1| (e_value=3e-106) unnamed; (*ATH) AT1G06620.1 (e_value=6e-87) Symbol: None | 2-oxoglutarate-dependent dioxygenase, putative, similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP:P10967); contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family | chr1:2025600-2027270 FOR... ; (*SWP) sp|O04847|DV4H_CATRO (e_value=2e-89) Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H; Solyc09g089830.2.1 genomic_reference:SL2.40ch09 gene_region:64822817-64824349 transcript_region:SL2.40ch09:64822817..64824349+ go_terms:GO:0010302,GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH7_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase " 2 1 18 20 opLeV0100000564 sgn|U223312 GGAGGATAATGACCACACTCAAGAAAGGACTGTGGATGATAAAGTTTCTTCAGCACTTATTAATAGGGTT Experimental SGN-U573453 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|42562974|ref|NP_176732.2| (e_value=2e-59) calcium-binding EF hand family protein [Arabidopsis thaliana]; (*ATH) AT1G65540.1 (e_value=2e-61) Symbol: None | calcium-binding EF hand family protein, similar to leucine zipper-EF-hand containing transmembrane protein 1 (Homo sapiens) GI:4235226; contains Pfam profile PF00036: EF hand | chr1:24366045-24369674 REVERSE | Aliases: F5I14.7, F5I14_... ; Solyc11g008770.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2938533-2950401 transcript_region:SL2.40ch11:2938533..2950401- go_terms:GO:0005509 functional_description:"LETM1 and EF-hand domain-containing protein 1, mitochondrial (AHRD V1 *--- LETM1_CHICK); contains Interpro domain(s) IPR011685 LETM1-like " 2 7 2 19 opLeV0100000565 sgn|U227378 CGAATGTTCGGGTCATTCAACGTAAAATGGCATATGTGATTGGCCTGCCTCTAAGTCTTGCAGATGAAGA Experimental SGN-U562716 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157337426|emb|CAO21772.1| (e_value=2e-109) unnamed; (*ATH) AT3G45630.1 (e_value=4e-107) Symbol: None | RNA recognition motif (RRM)-containing protein, similar to SP:P34909 General negative regulator of transcription subunit 4 {Saccharomyces cerevisiae}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif)... ; (*SWP) sp|Q09818|YAC4_SCHPO (e_value=1e-53) Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharomyces pombe GN=SPAC16C9.04c; Solyc04g009510.2.1 genomic_reference:SL2.40ch04 gene_region:2930038-2938296 transcript_region:SL2.40ch04:2930038..2938296+ go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT); contains Interpro domain(s) IPR003954 RNA recognition, region 1 " 2 5 2 19 opLeV0100000566 sgn|U216936 CGATGCGTGCATTGGTCTAACAAACGCAAGGATCGAAGGGAAGCTCTGAATCTCAACATGTGTTTACCAG Experimental SGN-U563936 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157340547|emb|CAO47352.1| (e_value=2e-115) unnamed; (*ATH) AT4G34920.1 (e_value=1e-113) Symbol: None | 1-phosphatidylinositol phosphodiesterase-related, contains weak similarity to 1-phosphatidylinositol phosphodiesterase precursor (EC 3.1.4.10) (Phosphatidylinositol-specific phospholipase C) (PI-PLC). (Swiss-Prot:P34024) (Listeria mon... ; \N \N 2 3 2 19 opLeV0100000567 sgn|U217577 ACACTACAAGCAGTGGCTCAACTGGTTCACATACCAGTTCTCCAAAGAGCTCTAGATTGCGCAATGCATC Experimental SGN-U579246 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157357748|emb|CAO64742.1| (e_value=6e-114) unnamed; (*ATH) AT4G33650.1 (e_value=2e-85) | Symbol: None | dynamin-like protein 2a (ADL2a), identical to dynamin like protein 2a (ADL2a) (Arabidopsis thaliana) GI:19032337; supported by cDNA gi:19032336 | chr4:16160938-16166932 FORWARD | Aliases: T16L1.140, T16L1_140; (*SWP) sp|Q8S944|DRP3A_ARATH (e_value=2e-84) Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A; Solyc01g106050.2.1 genomic_reference:SL2.40ch01 gene_region:85782931-85793738 transcript_region:SL2.40ch01:85782931..85793738- go_terms:GO:0042803 functional_description:"Dynamin-2 (AHRD V1 ***- D0MQ53_PHYIN); contains Interpro domain(s) IPR000375 Dynamin central region " 2 1 2 19 opLeV0100000568 sgn|U238930 TCCCTATGTCTCTCAGTCCTAGAATCCGATCCACGTAGCTACAAGGCTGAGGGTAGTGATGATATAACCA Experimental SGN-U567308 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|2765242|emb|CAA73334.1| (e_value=3e-42) invertase; (*ATH) AT1G47960.1 (e_value=4e-21) Symbol: None | invertase/pectin methylesterase inhibitor family protein, low similarity to SP:P83326 Pectinesterase inhibitor (Pectin methylesterase inhibitor) (PMEI) {Actinidia chinensis}; contains Pfam profile PF04043: Plant invertase/pectin methy... ; Solyc12g099190.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64769687-64770214 transcript_region:SL2.40ch12:64769687..64770214+ go_terms:GO:0030599 functional_description:"Invertase inhibitor (AHRD V1 ***- C1KBP2_SOLTU); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor " 4 7 14 20 opLeV0100000569 sgn|U218673 TTAAGCCATGTGAAGACTCCTGCGTTTGCAGTGCTGTGCATGGCGTGCAGTCAGGGATCGGATGCCTTCT Experimental SGN-U585668 Tomato 200607#2 [31 ESTs aligned] (*GB) gi|157349773|emb|CAO39629.1| (e_value=0) unnamed; (*ATH) AT4G00370.1 (e_value=0) | Symbol: None | sugar transporter family protein, contains Pfam profile PF00083: major facilitator superfamily protein | chr4:161539-166357 REVERSE | Aliases: A_IG005I10.NN, A_IG005I10_NN, F5I10.7, F5I10_7; (*SWP) sp|Q8GX78|ANTR2_ARATH (e_value=0) Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2; Solyc01g094720.2.1 genomic_reference:SL2.40ch01 gene_region:77913332-77919557 transcript_region:SL2.40ch01:77913332..77919557+ go_terms:GO:0005315 functional_description:"Vesicular glutamate transporter (AHRD V1 **-* B3A011_9PULM); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter " 4 5 14 20 opLeV0100000570 sgn|U223357 CTGATTCAGATTAAGAACCCGGAGCAACGCGGAAGTGGATCGCAGTTTAGAGGGCTTCAGAAAAAGAGGA Experimental SGN-U585436 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157351482|emb|CAO41707.1| (e_value=3e-102) unnamed; (*ATH) AT1G16770.1 (e_value=5e-91) | Symbol: None | expressed protein | chr1:5737893-5739103 FORWARD | Aliases: F17F16.12, F17F16_12; Solyc03g113510.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57687718-57688765 transcript_region:SL2.40ch03:57687718..57688765- functional_description:"Contig An16c0080 complete genome (AHRD V1 ***- A2R766_ASPNC)" 4 3 14 20 opLeV0100000571 sgn|U215976 TTGCCAACTGTTGCAGGGCCTAATGGGATTGATCCCATGTCAGTGTACACCGCCGGAGCTGAGATTAATC Experimental SGN-U570986 Tomato 200607#2 [35 ESTs aligned] (*GB) gi|2290532|gb|AAC18914.1| (e_value=1e-175) AN11 [Petunia x hybrida]; (*ATH) AT5G24520.3 (e_value=1e-158) Symbol: None | transparent testa glabra 1 protein (TTG1), identical to transparent testa glabra 1 (Ttg1) protein (GI:10177852) {Arabidopsis thaliana}; contains Pfam PF00400: WD domain, G-beta repeat (4 copies,1 weak); | chr5:8370709-8372850 REVERSE ... ; (*SWP) sp|Q9XGN1|TTG1_ARATH (e_value=1e-157) Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana GN=TTG1; Solyc03g097340.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:53095076-53096104 transcript_region:SL2.40ch03:53095076..53096104+ functional_description:"WD-repeat protein (AHRD V1 **-- C7EAF4_TOBAC); contains Interpro domain(s) IPR017986 WD40 repeat, region " 4 1 14 20 opLeV0100000572 sgn|U215222 ACTTTCATTTCTGAACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGG Experimental SGN-U573999 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|37962661|gb|AAR05647.1| (e_value=0) alpha-DOX2 [Lycopersicon esculentum]; (*ATH) AT3G01420.1 (e_value=0) Symbol: None | pathogen-responsive alpha-dioxygenase, putative, similar to pathogen-inducible alpha-dioxygenase (Nicotiana attenuata) GI:12539609; contains Pfam profile PF03098: Animal haem peroxidase | chr3:159473-162844 REVERSE | Aliases: T13O15.6... ; Solyc02g087090.2.1 genomic_reference:SL2.40ch02 gene_region:44190237-44193102 transcript_region:SL2.40ch02:44190237..44193102+ go_terms:GO:0016165 functional_description:"Prostaglandin G/H synthase 2 (AHRD V1 **-- PGH2_CHICK); contains Interpro domain(s) IPR002007 Haem peroxidase, animal " 4 7 18 20 opLeV0100000573 sgn|U218724 TGAGCTGATCCCCAATACAACTAGCTTGCTGTCAGAACCTAACAAGTGCAAACTTCCTTGTTCGGTGTCG Experimental SGN-U588018 Tomato 200607#2 [1 ESTs aligned] Solyc07g040990.2.1 genomic_reference:SL2.40ch07 gene_region:48808707-48811933 transcript_region:SL2.40ch07:48808707..48811933+ go_terms:GO:0005515 functional_description:"Protein phosphatase 2C (AHRD V1 ***- A5A6P8_WHEAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C " 4 5 18 20 opLeV0100000574 sgn|U214265 AGGTGGTGAAGATGATACTCATGAATTGGAATTAACATTAGGGCTATCAAGTTACAACGTTCGTCGAAGG Experimental SGN-U567766 Tomato 200607#2 [31 ESTs aligned] (*GB) gi|82623371|gb|ABB87100.1| (e_value=5e-87) unknown; (*ATH) AT5G67390.2 (e_value=8e-17) Symbol: None | expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At5g57340.2); similar to expressed protein [Arabidopsis thaliana] (TAIR:At5g57340.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)... ; Solyc02g092590.2.1 genomic_reference:SL2.40ch02 gene_region:48222953-48223908 transcript_region:SL2.40ch02:48222953..48223908+ functional_description:"Os03g0604500 protein (Fragment) (AHRD V1 *-*- C7J083_ORYSJ)" 4 3 18 20 opLeV0100000575 sgn|U213514 GTTCACCCTGACAGTCTTCTTGTCATCACCATTAACGGATTTGGTCTTGC Experimental SGN-U589398 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|37050896|emb|CAE47557.1| (e_value=5e-49) seven-transmembrane-domain protein 1 [Lycopersicon esculentum]; (*ATH) AT3G28007.1 (e_value=6e-33) | Symbol: None | nodulin MtN3 family protein, contains Pfam PF03083 MtN3/saliva family; similar to LIM7 GI:431154 (induced in meiotic prophase in lily microsporocytes) from (Lilium longiflorum) | chr3:10409336-10410956 REVERSE | Aliases: None; (*SWP) sp|Q8LFH5|RPG1_ARATH (e_value=4e-27) Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1; Solyc06g071400.2.1 genomic_reference:SL2.40ch06 gene_region:40318689-40320251 transcript_region:SL2.40ch06:40318689..40320251+ go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_CAEBR); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue " 4 1 18 20 opLeV0100000576 sgn|U217528 ATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGC Experimental SGN-U572555 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157360858|emb|CAO70673.1| (e_value=2e-166) unnamed; (*ATH) AT2G27210.1 (e_value=5e-166) Symbol: None | kelch repeat-containing serine/threonine phosphoesterase family protein, similar to SP:P48482 Serine/threonine protein phosphatase PP1 isozyme 2 (EC 3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile PF00149: Calcineurin-like pho... ; (*SWP) sp|Q9SHS7|BSL3_ARATH (e_value=5e-165) Serine/threonine-protein phosphatase BSL3 OS=Arabidopsis thaliana GN=BSL3; Solyc11g071920.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52324269-52333682 transcript_region:SL2.40ch11:52324269..52333682+ go_terms:GO:0030145,GO:0006265,GO:0005515,GO:0016787 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 ***- D7LGU6_ARALY); contains Interpro domain(s) IPR012391 Serine/threonine protein phosphatase, BSU1 " 4 7 2 19 opLeV0100000577 sgn|U217817 CTTGTCAAAAATTTGCGCTCAGCTCTCAAAGTGTTTATGTGAAGGGGTGTGATCGTTGACCAACTTATCG Experimental SGN-U572160 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|147839680|emb|CAN75020.1| (e_value=8e-78) hypothetical; (*ATH) AT4G37850.1 (e_value=3e-47) | Symbol: None | basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain | chr4:17796087-17797894 REVERSE | Aliases: T28I19.130, T28I19_130; (*SWP) sp|P13027|ARRS_MAIZE (e_value=4e-15) Anthocyanin regulatory R-S protein OS=Zea mays GN=R-S; Solyc01g106460.2.1 genomic_reference:SL2.40ch01 gene_region:86111229-86112985 transcript_region:SL2.40ch01:86111229..86112985+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 **** Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding " 4 5 2 19 opLeV0100000578 sgn|U239648 AACTCGAACTTCTGTGTACCTGATAAATGATACACTTTGTTGGCATTTGGGCATATCTGTCGCACCATTT Experimental SGN-U598076 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157356374|emb|CAO62526.1| (e_value=3e-69) unnamed; (*ATH) AT3G47740.1 (e_value=8e-69) | Symbol: None | ABC transporter family protein, ATP binding cassette transporter ABC1, Homo sapiens, PIR2:A54774 | chr3:17611636-17615950 FORWARD | Aliases: T23J7.70; (*SWP) sp|Q1PEH6|ATH2_ARATH (e_value=7e-68) ABC2 homolog 2 OS=Arabidopsis thaliana GN=ATH2; Solyc06g070920.2.1 genomic_reference:SL2.40ch06 gene_region:39944737-39948701 transcript_region:SL2.40ch06:39944737..39948701- go_terms:GO:0005975,GO:0017111,GO:0016887 functional_description:"ATP-binding cassette (ABC) transporter 17 (AHRD V1 ***- Q4H493_RAT); contains Interpro domain(s) IPR003439 ABC transporter-like " 4 3 2 19 opLeV0100000579 sgn|U218468 ACCTTATGTTGAAGGTCTAGGAATATACTCCGTTTCCAACACATACATCTGAGCTTTGCCGTTTCTTTAT Experimental SGN-U567721 Tomato 200607#2 [10 ESTs aligned] \N \N 4 1 2 19 opLeV0100000580 sgn|U235082 TTGGTGCCCCGGTTCGAGGAACACCTCAAATTCGGACACCAACGATCCGTGCACGTGCCAGGGATTGACG Experimental SGN-U578674 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|20127012|gb|AAM10933.1|AF488561_1 (e_value=5e-38) putative; (*ATH) AT4G00050.1 (e_value=4e-40) | Symbol: None | basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain | chr4:17792-20066 FORWARD | Aliases: F6N15.11, F6N15_11; Solyc01g090790.2.1 genomic_reference:SL2.40ch01 gene_region:76228389-76233064 transcript_region:SL2.40ch01:76228389..76233064- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH " 2 5 20 5 opLeV0100000581 sgn|U220379 AGGGGTTTATTGTTGGATGGATTTGCGGTCATTGTTGAAAGAAGCAACACTAGATGCTGAGATGTCACTT Control control_biosequence SGN-U583839 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|231357|sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate; (*ATH) AT3G61510.1 (e_value=2e-168) Symbol: None | 1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative, similar to ACC synthases from Citrus sinensis (GI:6434142), Cucumis melo (GI:695402), Cucumis sativus (GI:3641645) | chr3:22774470-22776705 REVERSE | Alias... ; (*SWP) sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum lycopersicum GN=ACS4; Solyc05g050010.2.1 genomic_reference:SL2.40ch05 gene_region:59035052-59037966 transcript_region:SL2.40ch05:59035052..59037966+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q659H5_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site " 4 1 14 8 opLeV0100000581 sgn|U220379 AGGGGTTTATTGTTGGATGGATTTGCGGTCATTGTTGAAAGAAGCAACACTAGATGCTGAGATGTCACTT Control control_biosequence SGN-U583839 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|231357|sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate; (*ATH) AT3G61510.1 (e_value=2e-168) Symbol: None | 1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative, similar to ACC synthases from Citrus sinensis (GI:6434142), Cucumis melo (GI:695402), Cucumis sativus (GI:3641645) | chr3:22774470-22776705 REVERSE | Alias... ; (*SWP) sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum lycopersicum GN=ACS4; Solyc05g050010.2.1 genomic_reference:SL2.40ch05 gene_region:59035052-59037966 transcript_region:SL2.40ch05:59035052..59037966+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q659H5_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site " 3 1 3 4 opLeV0100000581 sgn|U220379 AGGGGTTTATTGTTGGATGGATTTGCGGTCATTGTTGAAAGAAGCAACACTAGATGCTGAGATGTCACTT Control control_biosequence SGN-U583839 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|231357|sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate; (*ATH) AT3G61510.1 (e_value=2e-168) Symbol: None | 1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative, similar to ACC synthases from Citrus sinensis (GI:6434142), Cucumis melo (GI:695402), Cucumis sativus (GI:3641645) | chr3:22774470-22776705 REVERSE | Alias... ; (*SWP) sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum lycopersicum GN=ACS4; Solyc05g050010.2.1 genomic_reference:SL2.40ch05 gene_region:59035052-59037966 transcript_region:SL2.40ch05:59035052..59037966+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q659H5_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site " 3 3 1 14 opLeV0100000581 sgn|U220379 AGGGGTTTATTGTTGGATGGATTTGCGGTCATTGTTGAAAGAAGCAACACTAGATGCTGAGATGTCACTT Control control_biosequence SGN-U583839 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|231357|sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate; (*ATH) AT3G61510.1 (e_value=2e-168) Symbol: None | 1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative, similar to ACC synthases from Citrus sinensis (GI:6434142), Cucumis melo (GI:695402), Cucumis sativus (GI:3641645) | chr3:22774470-22776705 REVERSE | Alias... ; (*SWP) sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum lycopersicum GN=ACS4; Solyc05g050010.2.1 genomic_reference:SL2.40ch05 gene_region:59035052-59037966 transcript_region:SL2.40ch05:59035052..59037966+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q659H5_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site " 4 2 8 12 opLeV0100000581 sgn|U220379 AGGGGTTTATTGTTGGATGGATTTGCGGTCATTGTTGAAAGAAGCAACACTAGATGCTGAGATGTCACTT Control control_biosequence SGN-U583839 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|231357|sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate; (*ATH) AT3G61510.1 (e_value=2e-168) Symbol: None | 1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative, similar to ACC synthases from Citrus sinensis (GI:6434142), Cucumis melo (GI:695402), Cucumis sativus (GI:3641645) | chr3:22774470-22776705 REVERSE | Alias... ; (*SWP) sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum lycopersicum GN=ACS4; Solyc05g050010.2.1 genomic_reference:SL2.40ch05 gene_region:59035052-59037966 transcript_region:SL2.40ch05:59035052..59037966+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q659H5_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site " 1 1 19 6 opLeV0100000581 sgn|U220379 AGGGGTTTATTGTTGGATGGATTTGCGGTCATTGTTGAAAGAAGCAACACTAGATGCTGAGATGTCACTT Control control_biosequence SGN-U583839 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|231357|sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate; (*ATH) AT3G61510.1 (e_value=2e-168) Symbol: None | 1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative, similar to ACC synthases from Citrus sinensis (GI:6434142), Cucumis melo (GI:695402), Cucumis sativus (GI:3641645) | chr3:22774470-22776705 REVERSE | Alias... ; (*SWP) sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum lycopersicum GN=ACS4; Solyc05g050010.2.1 genomic_reference:SL2.40ch05 gene_region:59035052-59037966 transcript_region:SL2.40ch05:59035052..59037966+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q659H5_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site " 3 2 4 16 opLeV0100000581 sgn|U220379 AGGGGTTTATTGTTGGATGGATTTGCGGTCATTGTTGAAAGAAGCAACACTAGATGCTGAGATGTCACTT Control control_biosequence SGN-U583839 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|231357|sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate; (*ATH) AT3G61510.1 (e_value=2e-168) Symbol: None | 1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative, similar to ACC synthases from Citrus sinensis (GI:6434142), Cucumis melo (GI:695402), Cucumis sativus (GI:3641645) | chr3:22774470-22776705 REVERSE | Alias... ; (*SWP) sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum lycopersicum GN=ACS4; Solyc05g050010.2.1 genomic_reference:SL2.40ch05 gene_region:59035052-59037966 transcript_region:SL2.40ch05:59035052..59037966+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q659H5_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site " 4 4 6 20 opLeV0100000581 sgn|U220379 AGGGGTTTATTGTTGGATGGATTTGCGGTCATTGTTGAAAGAAGCAACACTAGATGCTGAGATGTCACTT Control control_biosequence SGN-U583839 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|231357|sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate; (*ATH) AT3G61510.1 (e_value=2e-168) Symbol: None | 1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative, similar to ACC synthases from Citrus sinensis (GI:6434142), Cucumis melo (GI:695402), Cucumis sativus (GI:3641645) | chr3:22774470-22776705 REVERSE | Alias... ; (*SWP) sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum lycopersicum GN=ACS4; Solyc05g050010.2.1 genomic_reference:SL2.40ch05 gene_region:59035052-59037966 transcript_region:SL2.40ch05:59035052..59037966+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q659H5_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site " 2 8 3 5 opLeV0100000581 sgn|U220379 AGGGGTTTATTGTTGGATGGATTTGCGGTCATTGTTGAAAGAAGCAACACTAGATGCTGAGATGTCACTT Control control_biosequence SGN-U583839 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|231357|sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate; (*ATH) AT3G61510.1 (e_value=2e-168) Symbol: None | 1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative, similar to ACC synthases from Citrus sinensis (GI:6434142), Cucumis melo (GI:695402), Cucumis sativus (GI:3641645) | chr3:22774470-22776705 REVERSE | Alias... ; (*SWP) sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum lycopersicum GN=ACS4; Solyc05g050010.2.1 genomic_reference:SL2.40ch05 gene_region:59035052-59037966 transcript_region:SL2.40ch05:59035052..59037966+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q659H5_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site " 2 7 15 20 opLeV0100000581 sgn|U220379 AGGGGTTTATTGTTGGATGGATTTGCGGTCATTGTTGAAAGAAGCAACACTAGATGCTGAGATGTCACTT Control control_biosequence SGN-U583839 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|231357|sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate; (*ATH) AT3G61510.1 (e_value=2e-168) Symbol: None | 1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative, similar to ACC synthases from Citrus sinensis (GI:6434142), Cucumis melo (GI:695402), Cucumis sativus (GI:3641645) | chr3:22774470-22776705 REVERSE | Alias... ; (*SWP) sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum lycopersicum GN=ACS4; Solyc05g050010.2.1 genomic_reference:SL2.40ch05 gene_region:59035052-59037966 transcript_region:SL2.40ch05:59035052..59037966+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q659H5_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site " 4 7 3 18 opLeV0100000581 sgn|U220379 AGGGGTTTATTGTTGGATGGATTTGCGGTCATTGTTGAAAGAAGCAACACTAGATGCTGAGATGTCACTT Control control_biosequence SGN-U583839 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|231357|sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate; (*ATH) AT3G61510.1 (e_value=2e-168) Symbol: None | 1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative, similar to ACC synthases from Citrus sinensis (GI:6434142), Cucumis melo (GI:695402), Cucumis sativus (GI:3641645) | chr3:22774470-22776705 REVERSE | Alias... ; (*SWP) sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum lycopersicum GN=ACS4; Solyc05g050010.2.1 genomic_reference:SL2.40ch05 gene_region:59035052-59037966 transcript_region:SL2.40ch05:59035052..59037966+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q659H5_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site " 2 5 15 20 opLeV0100000582 sgn|U227286 TCTGGAGTGTGAGTTAGTTAAGGTTCTTCATGTGTTCTTGGTGTTCTTAAAGAAGAAGGAAAAATAGTAC Experimental SGN-U586208 Tomato 200607#2 [2 ESTs aligned] \N \N 2 3 15 20 opLeV0100000583 sgn|U233180 TCATTCTTATGACACTTAGCAAGCCAAGCATACCAAACGGGTCAGGAGCGGTTTGAGCCTGCATGGATTT Experimental SGN-U564749 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|62824286|gb|AAY15746.1| (e_value=9e-49) VIP2 [Nicotiana benthamiana]; (*ATH) AT1G07705.2 (e_value=2e-40) |; (*SWP) sp|Q9NZN8|CNOT2_HUMAN (e_value=2e-11) CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2; Solyc06g075590.2.1 genomic_reference:SL2.40ch06 gene_region:43370736-43379277 transcript_region:SL2.40ch06:43370736..43379277+ go_terms:GO:0005634 functional_description:"CCR4-NOT transcription complex subunit 2 (AHRD V1 **-- B6SVB8_MAIZE); contains Interpro domain(s) IPR007282 NOT2/NOT3/NOT5 " 2 1 15 20 opLeV0100000584 sgn|U212556 GATGATGGCACAGGTCGCACTTTTATTGTTGGTGGCCGTGGTGCCACGGGTTTGGTACTGACAGTTGGAA Experimental SGN-U577923 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157347882|emb|CAO22469.1| (e_value=7e-123) unnamed; (*ATH) AT1G63900.1 (e_value=1e-109) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr1:23720382-23722923 FORWARD | Aliases: T12P18.8, T12P18_8, AT1G63890; (*SWP) sp|Q5M7X9|MUL1_DANRE (e_value=9e-21) Mitochondrial ubiquitin ligase activator of nfkb 1 OS=Danio rerio GN=mul1; Solyc06g084360.2.1 genomic_reference:SL2.40ch06 gene_region:45789645-45797146 transcript_region:SL2.40ch06:45789645..45797146+ go_terms:GO:0008270 functional_description:"Baculoviral IAP repeat-containing protein 3 (AHRD V1 *--- B0XJ37_CULQU); contains Interpro domain(s) IPR001841 Zinc finger, RING-type " 2 7 19 20 opLeV0100000585 sgn|U214743 CTGCTTACTGTAGAAAGATTGCAAGGAATGTGGCCGCAATGGCTACATCAACTGGAGAAGTTGCCACTGC Experimental SGN-U581101 Tomato 200607#2 [61 ESTs aligned] (*GB) gi|157349186|emb|CAO24332.1| (e_value=1e-49) unnamed; (*ATH) AT2G46820.2 (e_value=5e-45) | Symbol: None | expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g52220.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP54812.1) | chr2:19250565-19252206 FORWARD | Aliases: None; (*SWP) sp|Q8LCA1|TMP14_ARATH (e_value=5e-44) Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14; Solyc10g005050.2.1 genomic_reference:SL2.40ch10 gene_region:50241-52495 transcript_region:SL2.40ch10:50241..52495+ go_terms:GO:0003677 functional_description:"Thylakoid membrane phosphoprotein 14 kDa, chloroplastic (AHRD V1 **-- TMP14_ARATH)" 2 5 19 20 opLeV0100000586 sgn|U214609 GTTGAAGCTGATGAATCTTGGGTGCCGATGCCAGAAAAGCTATACAAGGAGTTGGATTATGCAACAAAGC Experimental SGN-U575508 Tomato 200607#2 [56 ESTs aligned] (*GB) gi|160334210|gb|ABX24525.1| (e_value=0) omega-3; (*ATH) AT2G29980.1 (e_value=1e-171) | Symbol: None | omega-3 fatty acid desaturase, endoplasmic reticulum (FAD3), identical to SP:48623 | chr2:12788668-12792129 REVERSE | Aliases: F23F1.10, F23F1_10; (*SWP) sp|P48626|FAD3E_TOBAC (e_value=0) Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3; Solyc06g007130.2.1 genomic_reference:SL2.40ch06 gene_region:1182184-1184241 transcript_region:SL2.40ch06:1182184..1184241- go_terms:GO:0042389 functional_description:"Omega-3 fatty acid desaturase (AHRD V1 **** A9LNM9_SOLLC); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 " 2 3 19 20 opLeV0100000587 sgn|U218545 ATTACACCCTTAACACCTCCATTCCTTATGTTTATACGGGTCTAGGGACAATCAGGTAGATATGCGTCTC Experimental SGN-U572907 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157341667|emb|CAO62222.1| (e_value=8e-75) unnamed; (*ATH) AT5G17210.1 (e_value=5e-68) | Symbol: None | expressed protein | chr5:5656435-5658149 FORWARD | Aliases: MKP11.6, MKP11_6; Solyc03g096860.2.1 genomic_reference:SL2.40ch03 gene_region:52681721-52685333 transcript_region:SL2.40ch03:52681721..52685333+ functional_description:"Fiber protein Fb34 (AHRD V1 ***- Q6T7D3_GOSBA); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 " 2 1 19 20 opLeV0100000588 sgn|U229966 ACTTGACTTGACATGAGAAGTTTCACTCACATCTTGCACTCCATTCTCCTTAGACGGTCCTTCAATCTCA Experimental SGN-U566799 Tomato 200607#2 [2 ESTs aligned] Solyc12g036870.1.1 evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:33008773-33009822 transcript_region:SL2.40ch12:33008773..33009822+ functional_description:"Genomic DNA chromosome 5 P1 clone MJJ3 (AHRD V1 *-*- Q9FFJ8_ARATH)" 2 7 3 19 opLeV0100000589 sgn|U241789 TTGTCTAGTCCTTGCTACTCCAACTCTTGGCCAAACTAGACAAGCTTTGGAGATAATTATCGGCGGAGGT Experimental SGN-U579193 Tomato 200607#2 [2 ESTs aligned] Solyc10g050110.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:43292520-43293848 transcript_region:SL2.40ch10:43292520..43293848+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP" 2 5 3 19 opLeV0100000590 sgn|U221607 GGGTTGGAGAATCTGGTGGGGCCTTCAATAACGGAGGTCCTAATGTGTCTAACACCTTTGTGAACAGTTT Experimental SGN-U574619 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|195650897|gb|ACG44916.1| (e_value=0) heparanase-like; (*ATH) AT5G61250.2 (e_value=0) | Symbol: None | glycosyl hydrolase family 79 N-terminal domain-containing protein, similar to beta-glucuronidase GI:8918740 from (Scutellaria baicalensis) | chr5:24649210-24652505 REVERSE | Aliases: None; (*SWP) sp|Q8L608|HPSE2_ARATH (e_value=0) Heparanase-like protein 2 OS=Arabidopsis thaliana GN=At5g61250; Solyc06g069580.2.1 genomic_reference:SL2.40ch06 gene_region:39722232-39727584 transcript_region:SL2.40ch06:39722232..39727584- go_terms:GO:0030305,GO:0004566 functional_description:"Heparanase-like protein 2 (AHRD V1 **** B6U6D3_MAIZE); contains Interpro domain(s) IPR005199 Glycoside hydrolase family 79, N-terminal " 2 3 3 19 opLeV0100000591 sgn|U218755 CCTTACCTTCTCCTGATCAGGGCCTCAAGGGGAGTACTACATCTCAGCACTGTTTAGTAGTGGTGGCGGC Experimental SGN-U579451 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|189032255|gb|ACD75053.1| (e_value=1e-90) Ser/Thr; (*ATH) AT1G69220.1 (e_value=4e-60) | Symbol: None | serine/threonine protein kinase, putative, identical to serine/threonine kinase (Arabidopsis thaliana) gi:2352084:gb:AAB68776 | chr1:26023776-26029834 REVERSE | Aliases: F4N2.24; Solyc05g012130.2.1 genomic_reference:SL2.40ch05 gene_region:5333154-5343576 transcript_region:SL2.40ch05:5333154..5343576- go_terms:GO:0006468 functional_description:"Serine/threonine kinase 25 (AHRD V1 *-*- Q6V9V7_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 2 1 3 19 opLeV0100000592 sgn|U216111 CCCAGACAGGTATCTCCAGCCAGAGCAAGAAACTCCGGTCATTTCCGCCGGAGCGGAGGTTCCAGTTATC Experimental SGN-U565165 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157358971|emb|CAO66873.1| (e_value=2e-72) unnamed; (*ATH) AT4G25310.1 (e_value=6e-62) Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase (Petunia x hybrida)(GI:311658), (Solanum tuberosum)(GI:1039356); contains PF03171 2OG-Fe(II) oxygenase superfamily domain | chr4:12949763-12951148 FORWA... ; (*SWP) sp|Q96323|LDOX_ARATH (e_value=9e-26) Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX; Solyc02g071450.2.1 genomic_reference:SL2.40ch02 gene_region:35468992-35471461 transcript_region:SL2.40ch02:35468992..35471461- go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-- ACCO1_MALDO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase " 4 7 15 20 opLeV0100000593 sgn|U228248 CGAGTCGAAAATCATGGGATATCGATGATTTTGCTTCTCAAAATGTTGACAGAGTAGAGGAAACAGATGT Experimental SGN-U565523 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205251|gb|AAT39968.2| (e_value=7e-102) hypothetical; Solyc05g007570.2.1 genomic_reference:SL2.40ch05 gene_region:2106441-2110793 transcript_region:SL2.40ch05:2106441..2110793- go_terms:GO:0005840 functional_description:"cDNA clone J023065D24 full insert sequence (AHRD V1 *-*- B7EKP5_ORYSJ); contains Interpro domain(s) IPR012870 Protein of unknown function DUF1666 " 4 3 15 20 opLeV0100000594 sgn|U221653 CCTTGTTACAATAATTGGAAGACTAAGAGAGGAGGCCCAAAATGCCCTTAATCATATATGCACTGACGAT Experimental SGN-U582359 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157348448|emb|CAO23340.1| (e_value=2e-37) unnamed; (*ATH) AT1G74670.1 (e_value=1e-31) Symbol: None | gibberellin-responsive protein, putative, similar to SP:P46690 Gibberellin-regulated protein 4 precursor {Arabidopsis thaliana} GASA4; contains Pfam profile PF02704: Gibberellin regulated protein | chr1:28056960-28057810 FORWARD | Ali... ; (*SWP) sp|P27057|GAST1_SOLLC (e_value=5e-37) Protein GAST1 OS=Solanum lycopersicum GN=GAST1; Solyc04g017720.2.1 genomic_reference:SL2.40ch04 gene_region:7793774-7795011 transcript_region:SL2.40ch04:7793774..7795011+ functional_description:"Gibberellin regulated protein (AHRD V1 **-- Q2HRH3_MEDTR); contains Interpro domain(s) IPR003854 Gibberellin regulated protein " 4 1 15 20 opLeV0100000595 sgn|U220018 CTGCTCCTTCAGCCAGAGAGCTTTTAAGCAAGATGGAGCAATATACTCCTTCACATGACCATGTTGCTCC Experimental SGN-U564210 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|147857102|emb|CAN81797.1| (e_value=2e-95) hypothetical; (*ATH) AT5G11950.1 (e_value=9e-96) | Symbol: None | expressed protein, contains Pfam profile PF03641: decarboxylase family protein | chr5:3854969-3856945 FORWARD | Aliases: F14F18.120, F14F18_120; (*SWP) sp|Q84MC2|Y5195_ARATH (e_value=9e-95) Lysine decarboxylase-like protein At5g11950 OS=Arabidopsis thaliana GN=At5g11950; Solyc08g062820.2.1 genomic_reference:SL2.40ch08 gene_region:49347014-49349711 transcript_region:SL2.40ch08:49347014..49349711- go_terms:GO:0016831,GO:0042803 functional_description:"Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (AHRD V1 **-- LOG_ORYSJ); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 " 4 7 19 20 opLeV0100000596 sgn|U225548 ATTAGAGGGGTATTTGTTAGATGAGGCACTTCTATAGACTGACAGAATGCATAAAGTCTCGGACAATCCT Experimental SGN-U580176 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|157329961|emb|CAO43158.1| (e_value=1e-115) unnamed; (*ATH) AT1G34750.1 (e_value=8e-116) | Symbol: None | protein phosphatase 2C, putative / PP2C, putative, similar to GB:AAD17805 from (Lotus japonicus) (Proc. Natl. Acad. Sci. U.S.A. 96 (4), 1738-1743 (1999)) | chr1:12736073-12737705 REVERSE | Aliases: F11O6.14; (*SWP) sp|P40371|PP2C1_SCHPO (e_value=8e-29) Protein phosphatase 2C homolog 1 OS=Schizosaccharomyces pombe GN=ptc1; Solyc01g105280.2.1 genomic_reference:SL2.40ch01 gene_region:85268417-85273043 transcript_region:SL2.40ch01:85268417..85273043+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2C-like (AHRD V1 ***- A2Q6E4_MEDTR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C " 4 5 19 20 opLeV0100000597 sgn|U217874 CATTGCCTGAGATTTTCGCATGCTTTTCTTACTGTAACTCCTCCTACAGCCCCCAACCACTTTACCATCA Experimental SGN-U574866 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|21553676|gb|AAM62769.1| (e_value=3e-32) 50S ribosomal protein L4 [Arabidopsis thaliana]; (*ATH) AT2G20060.1 (e_value=2e-34) | Symbol: None | ribosomal protein L4 family protein, contains Pfam profile PF00573: ribosomal protein L4/L1 family | chr2:8666124-8668562 FORWARD | Aliases: T2G17.14, T2G17_14; (*SWP) sp|A5V601|RL4_SPHWW (e_value=4e-12) 50S ribosomal protein L4 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplD; \N \N 4 3 19 20 opLeV0100000598 sgn|U225636 TTGTTTTTTTGCTGATATCAAGCTGTACTCTAACATCGGCCAGTGACGGATCCACTCCCACAGATGCTAG Experimental SGN-U574061 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|147818235|emb|CAN73549.1| (e_value=1e-49) hypothetical; (*ATH) AT1G69010.1 (e_value=1e-39) | Symbol: None | basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain | chr1:25945374-25947495 FORWARD | Aliases: T6L1.19, T6L1_19; (*SWP) sp|Q9CAA4|BIM2_ARATH (e_value=1e-38) Putative transcription factor BIM2 OS=Arabidopsis thaliana GN=BIM2; Solyc03g046570.2.1 genomic_reference:SL2.40ch03 gene_region:17150323-17152819 transcript_region:SL2.40ch03:17150323..17152819+ functional_description:"BHLH domain class transcription factor (AHRD V1 ***- D9ZIP3_MALDO)" 4 1 19 20 opLeV0100000599 sgn|U236710 CCAGTGAGAAACACAGTTGCCGTATAGCCTCCCTTTTCTCCTCAGCTCTATCTGAGATTACCAACGTTTG Experimental SGN-U566985 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157351345|emb|CAO41532.1| (e_value=9e-79) unnamed; (*ATH) AT5G05180.2 (e_value=1e-29) | Symbol: None | expressed protein | chr5:1536227-1538493 FORWARD | Aliases: None; (*SWP) sp|Q9Y623|MYH4_HUMAN (e_value=1e-13) Myosin-4 OS=Homo sapiens GN=MYH4; Solyc03g095600.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:50224682-50226334 transcript_region:SL2.40ch03:50224682..50226334+ functional_description:"CENP-E like kinetochore protein (AHRD V1 *-*- B6SHI8_MAIZE)" 4 7 3 19 opLeV0100000600 sgn|U214316 CATCTGGTGTTGCGTTTGAGAGGAGGGATGCAGATCTTTGTGAAGACTCTTACTGGGAAGACAATCACAT Experimental SGN-U578847 Tomato 200607#2 [67 ESTs aligned] (*GB) gi|312160|emb|CAA51679.1| (e_value=0) ubiquitin [Lycopersicon esculentum]; (*ATH) AT4G05320.2 (e_value=0) | Symbol: None | polyubiquitin (UBQ10) (SEN3), senescence-associated protein; identical to GI:870791 | chr4:2718168-2720305 FORWARD | Aliases: None; (*SWP) sp|P69318|UBIQ_SOLLC (e_value=3e-35) Ubiquitin OS=Solanum lycopersicum GN=UBI3; Solyc11g005670.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:496333-497937 transcript_region:SL2.40ch11:496333..497937+ functional_description:"Ubiquitin (AHRD V1 ***- Q2UZT4_MUSAC); contains Interpro domain(s) IPR019956 Ubiquitin subgroup " 4 3 3 19 opLeV0100000601 sgn|U224507 ACGATTTTGACCTATGTATAGAGTGCTTCTCTGTTGGTGCTGAGGTGCATCCCCACAAAAGCCATCACCA Experimental SGN-U564205 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157332190|emb|CAO69390.1| (e_value=2e-164) unnamed; (*ATH) AT4G16420.1 (e_value=4e-152) | Symbol: None | transcriptional adaptor (ADA2b), identical to transcriptional adaptor ADA2b (Arabidopsis thaliana) gi:13591700:gb:AAK31320 | chr4:9262690-9266078 REVERSE | Aliases: DL4235C, FCAALL.57; (*SWP) sp|Q9ATB4|TAD2B_ARATH (e_value=4e-151) Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B; Solyc05g054200.2.1 genomic_reference:SL2.40ch05 gene_region:63300322-63307891 transcript_region:SL2.40ch05:63300322..63307891+ go_terms:GO:0003713 functional_description:"Transcriptional adapter 2 (AHRD V1 *-*- B3LFL4_YEAS1); contains Interpro domain(s) IPR016827 Transcriptional adaptor 2 " 2 7 16 20 opLeV0100000602 sgn|U214510 GTTCCTCTCAACCCCAAACGAGCTCGACCCTCTACAGGTACTAGTTAATC Experimental SGN-U589209 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|40557189|gb|AAR87866.1| (e_value=4e-113) ethylene-binding protein [Lycopersicon esculentum]; (*ATH) AT2G47520.1 (e_value=7e-24) Symbol: None | encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. | chr2:19509917-1951... ; (*SWP) sp|O22259|ERF71_ARATH (e_value=6e-23) Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071; \N \N 2 5 16 20 opLeV0100000603 sgn|U217194 GGTTGGGGTTCAATCCTCACTGATCTATACTCATGCAAGGCAGATATAGTGCTTCGTGGATATGGTGGTT Experimental SGN-U587865 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157346121|emb|CAO15818.1| (e_value=1e-36) unnamed; (*ATH) AT2G38180.1 (e_value=5e-55) Symbol: None | GDSL-motif lipase/hydrolase family protein, similar to SP:P41734 Isoamyl acetate-hydrolyzing esterase (EC 3.1.-.-) {Saccharomyces cerevisiae}; contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif | chr2:16004221-16... ; (*SWP) sp|Q711G3|IAH1_RAT (e_value=5e-11) Isoamyl acetate-hydrolyzing esterase 1 homolog OS=Rattus norvegicus GN=Iah1; \N \N 2 3 16 20 opLeV0100000604 sgn|U217920 CACACCAAAAATAGCTTCTGCTAGTGTATCCCCCAGACGATGTTCTGCTGCAGTATCTCCTCGGAGGATA Experimental SGN-U581355 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|118488461|gb|ABK96045.1| (e_value=1e-45) unknown; (*ATH) AT1G16520.1 (e_value=6e-43) | Symbol: None | expressed protein | chr1:5648763-5651160 FORWARD | Aliases: F3O9.32; Solyc07g066520.2.1 genomic_reference:SL2.40ch07 gene_region:65149420-65152954 transcript_region:SL2.40ch07:65149420..65152954- functional_description:"Os03g0659800 protein (Fragment) (AHRD V1 *-*- Q0DPV3_ORYSJ)" 2 1 16 20 opLeV0100000605 sgn|U223040 TTGAAACTGTTGCTGCCAAGTTAGCTGTGCCCATGTCTGATGTGCATACACCCGAGGAACCTGTGGCTGA Experimental SGN-U569079 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157352169|emb|CAO43197.1| (e_value=1e-82) unnamed; (*ATH) AT3G55600.1 (e_value=9e-77) | Symbol: None | expressed protein, predicted proteins, Arabidopsis thaliana | chr3:20631661-20633449 FORWARD | Aliases: F1I16.10; Solyc02g069380.2.1 genomic_reference:SL2.40ch02 gene_region:33867909-33875948 transcript_region:SL2.40ch02:33867909..33875948- go_terms:GO:0015491 functional_description:"Cation cation antiporter (AHRD V1 **** B6T2U8_MAIZE); contains Interpro domain(s) IPR019150 Vesicle transport protein, Use1 " 2 7 20 20 opLeV0100000606 sgn|U226660 ATTCTTGGACTAACAAAGCTGACACTATGGCCCGTAACGTCTGGCGTAACTTGAAAACTGGTCCATCAGT Experimental SGN-U569382 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157329674|emb|CAO41288.1| (e_value=3e-84) unnamed; (*ATH) AT5G13200.1 (e_value=2e-77) | Symbol: None | GRAM domain-containing protein / ABA-responsive protein-related, similar to ABA-responsive protein (Hordeum vulgare) GI:4103635; contains Pfam profile PF02893: GRAM domain | chr5:4207007-4208292 FORWARD | Aliases: T19L5.4; (*SWP) sp|Q9LYV6|GEML5_ARATH (e_value=1e-76) GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200; Solyc01g009760.2.1 genomic_reference:SL2.40ch01 gene_region:4138755-4141165 transcript_region:SL2.40ch01:4138755..4141165+ functional_description:"GRAM-containing/ABA-responsive protein (Fragment) (AHRD V1 *--- C6FBQ3_PSEMZ); contains Interpro domain(s) IPR004182 GRAM " 2 5 20 20 opLeV0100000607 sgn|U219302 AAGTCGGTTCCGGGTCTTGTTCTCGCTCTCTGAGTTCCGCCAGGATGTAAGTTTTTAACGGTTGATTTGG Experimental SGN-U578458 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|6016696|gb|AAF01523.1|AC009991_19 (e_value=3e-40) unknown; (*ATH) AT3G10985.1 (e_value=7e-24) | Symbol: None | wound-responsive protein-related, similar to SP:P20144 Wound-induced protein 1 {Solanum tuberosum} | chr3:3442534-3443451 FORWARD | Aliases: None; (*SWP) sp|P20144|WUN1_SOLTU (e_value=2e-31) Wound-induced protein 1 OS=Solanum tuberosum GN=WUN1; \N \N 2 3 20 20 opLeV0100000608 sgn|U219801 ATGGGAAAGGAAGGCTTCATCTGAAGGTAGTCATGGTCTGGCTCCTTCTACACCTGGAAGATCCCGTTTG Experimental SGN-U574184 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|157352416|emb|CAO43496.1| (e_value=1e-45) unnamed; (*ATH) AT3G25070.1 (e_value=4e-13) | Symbol: None | RPM1-interacting protein 4 (RIN4), identical to SP:Q8GYN5 RPM1-interacting protein 4 {Arabidopsis thaliana} | chr3:9132317-9134037 FORWARD | Aliases: MJL12.1; (*SWP) sp|Q8GYN5|RIN4_ARATH (e_value=3e-12) RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4; Solyc12g098440.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:64280961-64285394 transcript_region:SL2.40ch12:64280961..64285394+ functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0X0_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 " 2 1 20 20 opLeV0100000609 sgn|U232126 CCTAATGTCCTTATTGGGCTGAGATAGCCCAGGTGCTGCAATCCGTTGATGCTGATGCTGCTTTACAGGT Experimental SGN-U590764 Tomato 200607#2 [1 ESTs aligned] \N \N 2 3 4 19 opLeV0100000610 sgn|U237799 CATGTCAACAATGATTTCAACACCCTCTTTCGATCACTCCCTATTGATCGATCCTACTATGCATGTGGAG Experimental SGN-U574697 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157339023|emb|CAO42374.1| (e_value=1e-57) unnamed; (*ATH) AT5G37970.1 (e_value=1e-43) Symbol: None | S-adenosyl-L-methionine:carboxyl methyltransferase family protein, similar to defense-related protein cjs1 (Brassica carinata)(GI:14009292), theobromine synthase (Coffea arabica)(GI:13365751), SAM:jasmonic acid carboxyl methyltransfer... ; (*SWP) sp|Q9FKD0|MT797_ARATH (e_value=8e-43) Putative S-adenosylmethionine-dependent methyltransferase At5g37970 OS=Arabidopsis thaliana GN=At5g37970; Solyc01g005350.2.1 genomic_reference:SL2.40ch01 gene_region:248118-249519 transcript_region:SL2.40ch01:248118..249519- go_terms:GO:0008757 functional_description:"S-adenosyl-L-methionine salicylic acid carboxyl methyltransferase (AHRD V1 **** A7XZE9_9MAGN); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase " 2 1 4 19 opLeV0100000611 sgn|U213642 AGATGGCTACTCTTGGTGGAGTTCATGATTCTCATGGTTCCTCGCAGAACAGTGACGAGATCCATAGCCT Experimental SGN-U589743 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|6671192|gb|AAF23126.1|AF198388_1 (e_value=7e-28) cystatin; Solyc03g097270.2.1 genomic_reference:SL2.40ch03 gene_region:53034151-53040369 transcript_region:SL2.40ch03:53034151..53040369+ go_terms:GO:0004869,GO:0050897 functional_description:"Cysteine proteinase inhibitor (AHRD V1 **** Q5Y7Z8_PETHY); contains Interpro domain(s) IPR000010 Proteinase inhibitor I25, cystatin " 4 7 16 20 opLeV0100000612 sgn|U221427 TCCTCTAAATCTGAGAGTCCACTATCCTCGCTAAAAGCTCGTAAGGGGAAGTCACAGGTACAACTAATCA Experimental SGN-U564491 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157345458|emb|CAO14756.1| (e_value=6e-130) unnamed; (*ATH) AT5G40340.1 (e_value=2e-65) | Symbol: None | PWWP domain-containing protein, KED, Nicotiana tabacum, EMBL:AB009883 | chr5:16148882-16151908 REVERSE | Aliases: MPO12.6, MPO12_6; (*SWP) sp|Q9M3G7|ATM_ARATH (e_value=3e-12) Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM; Solyc02g086750.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:43944874-43947381 transcript_region:SL2.40ch02:43944874..43947381+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP " 4 5 16 20 opLeV0100000613 sgn|U229914 TCGTGTTCAAGATTGGTCTCGGAAGCAAGGGAGCTGCTTTGGCTAATGCCATTTCATATTGGATTAACGT Experimental SGN-U572373 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157338874|emb|CAO42225.1| (e_value=0) unnamed; (*ATH) AT5G52450.1 (e_value=1e-154) | Symbol: None | MATE efflux protein-related, strong similarity to unknown protein (pir::T02324); contains Pfam profile PF01554 Uncharacterized membrane protein family | chr5:21306125-21309088 REVERSE | Aliases: K24M7.20, K24M7_20; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=3e-84) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12; Solyc04g007540.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:1232799-1236007 transcript_region:SL2.40ch04:1232799..1236007- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ENT38); contains Interpro domain(s) IPR015521 MATE family transporter related protein " 4 1 16 20 opLeV0100000614 sgn|U218740 TCGTAGTCATATCGAGTGTAATAGTGACGTCCATAGGTTGCCCAGTGTTGGCGAACAATATCTTCAACAG Experimental SGN-U580653 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|12585316|sp|Q9M4G4|PGMC_SOLTU (e_value=0) Phosphoglucomutase,; (*ATH) AT1G23190.1 (e_value=0) Symbol: None | phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative, strong similarity to SP:P93805 Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2) (Glucose phosphomutase 2) (PGM 2) {Zea mays}; contains InterPro accession IPR00... ; (*SWP) sp|Q9M4G4|PGMC_SOLTU (e_value=0) Phosphoglucomutase, cytoplasmic OS=Solanum tuberosum GN=PGM1; Solyc04g045340.2.1 genomic_reference:SL2.40ch04 gene_region:31642460-31657602 transcript_region:SL2.40ch04:31642460..31657602+ go_terms:GO:0004614 functional_description:"Phosphoglucomutase (AHRD V1 **** Q9AUQ4_ORYSA); contains Interpro domain(s) IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III " 4 7 20 20 opLeV0100000615 sgn|U238398 GTTGCCTGGGGCGAGGGGCATAACTCCTGGGTCAGTGGTGTGGCATTTGATTCATATTGGTCAGCACCAA Experimental SGN-U584713 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147770083|emb|CAN69884.1| (e_value=7e-59) hypothetical; (*ATH) AT2G37160.2 (e_value=4e-60) Symbol: None | similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:At3g53390.1); similar to CreC [Emericella nidulans] (GB:AAF63188.1); contains InterPro domain G-protein beta WD-40 repeat (InterPro:IPR001... ; (*SWP) sp|Q08274|DMWD_MOUSE (e_value=1e-15) Dystrophia myotonica WD repeat-containing protein OS=Mus musculus GN=Dmwd; Solyc10g086070.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64360537-64366949 transcript_region:SL2.40ch10:64360537..64366949+ go_terms:GO:0000166 functional_description:"Wd-repeat protein (AHRD V1 **-- Q179V3_AEDAE); contains Interpro domain(s) IPR017986 WD40 repeat, region " 4 5 20 20 opLeV0100000616 sgn|U242049 GAAACTCAAAGCACAACCCTTTGGTATTTGTTTCCAATGTTAGAATCATCAAAAAGAACACCACTACCCC Experimental SGN-U567561 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157346681|emb|CAO16750.1| (e_value=2e-26) unnamed; Solyc11g066360.1.1 evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:49204723-49205974 transcript_region:SL2.40ch11:49204723..49205974+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012862 Protein of unknown function DUF1635 " 4 3 20 20 opLeV0100000617 sgn|U214535 TCACTTGCAGGTGTAATGAGGAATTTTGCTACGCATGTGGAGCAACTTGGAGCAAAAGGCATTGGAATTG Experimental SGN-U576932 Tomato 200607#2 [26 ESTs aligned] (*GB) gi|157348350|emb|CAO23137.1| (e_value=6e-34) unnamed; (*ATH) AT3G14250.1 (e_value=2e-29) | Symbol: None | zinc finger protein-related, contains weak similarity to zinc finger proteins and Pfam:PF01485 IBR domain | chr3:4745933-4746965 REVERSE | Aliases: MLN21.3; Solyc03g117860.2.1 genomic_reference:SL2.40ch03 gene_region:60930998-60932206 transcript_region:SL2.40ch03:60930998..60932206- go_terms:GO:0008270 functional_description:"IBR finger domain protein (AHRD V1 **-- Q4WL53_ASPFU); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type " 4 1 20 20 opLeV0100000618 sgn|U218516 AGCAAAGAGGGCTGGTGAAGATTCATTAAGAAGGTCCGGCCTTGGATACACAATAATTCGCCCAGGACCC Experimental SGN-U571487 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|157351554|emb|CAO41779.1| (e_value=0) unnamed; (*ATH) AT1G16720.1 (e_value=0) | Symbol: None | expressed protein | chr1:5723081-5726471 FORWARD | Aliases: F19K19.14; Solyc08g016080.2.1 genomic_reference:SL2.40ch08 gene_region:6589899-6596942 transcript_region:SL2.40ch08:6589899..6596942+ go_terms:GO:0008152 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 *--- B3ECK3_CHLL2); contains Interpro domain(s) IPR016040 NAD(P)-binding domain " 4 7 4 19 opLeV0100000619 sgn|U242452 TCTTAATCACAGGCTTGAACTTACCATGTCTCCTTTCGACATCCATCAAAGATGTTAGTGCTGTTCCACC Experimental SGN-U600383 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157348972|emb|CAO24050.1| (e_value=2e-45) unnamed; (*ATH) AT4G04040.1 (e_value=4e-45) Symbol: None | pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative, strong similarity to SP:Q41141 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase be... ; (*SWP) sp|Q41141|PFPB_RICCO (e_value=8e-43) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Ricinus communis GN=PFP-BETA; Solyc07g049280.2.1 genomic_reference:SL2.40ch07 gene_region:56858846-56866428 transcript_region:SL2.40ch07:56858846..56866428- go_terms:GO:0005945 functional_description:"Diphosphate-fructose-6-phosphate 1-phosphotransferase (AHRD V1 ***- D0TAW1_9BACE); contains Interpro domain(s) IPR011183 Pyrophosphate-dependent phosphofructokinase PfpB " 4 5 4 19 opLeV0100000620 sgn|U219381 CATCATTAGCCAGGGTAACCGTTTCAAGGCTGCCGACAATCCCAACACTAAAGAGGTGACAAACCGGAAT Experimental SGN-U571265 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|147774622|emb|CAN69904.1| (e_value=1e-94) hypothetical; (*ATH) AT1G14420.1 (e_value=1e-89) | Symbol: None | pectate lyase family protein, similar to pectate lyase P59 SP:P15722 from (Lycopersicon esculentum) | chr1:4931774-4933400 REVERSE | Aliases: F14L17.19, F14L17_19; (*SWP) sp|Q9M9S2|PEL3_ARATH (e_value=1e-88) Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59; Solyc05g007080.2.1 genomic_reference:SL2.40ch05 gene_region:1665367-1668386 transcript_region:SL2.40ch05:1665367..1668386+ go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7M6R5_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen " 4 1 4 19 opLeV0100000621 sgn|U223679 TTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAACCCTCACAGG Experimental SGN-U566189 Tomato 200607#2 [4 ESTs aligned] \N \N 2 6 13 20 opLeV0100000622 sgn|U226055 CACCGAGTTTTGTTCTTGTTTGTCGAGCCATAACAAACACGTGTGGCTTTTGGTATAGGGGCCGTTCTTG Experimental SGN-U569275 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|20067056|gb|AAM09517.1|AF489877_1 (e_value=5e-83) putative; (*ATH) AT4G34135.1 (e_value=2e-42) | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr4:16345285-16347137 REVERSE | Aliases: None; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=9e-82) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1; Solyc10g079980.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60739796-60741211 transcript_region:SL2.40ch10:60739796..60741211+ go_terms:GO:0008152 functional_description:"UDP-glucose glucosyltransferase (AHRD V1 ***- B6EWX3_LYCBA); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase " 2 4 13 20 opLeV0100000623 sgn|U224075 TGTAGTCATGGAGGCTGTGTAATTAGCCCATCCAACTATATTGCTCACGAGGGGCGCCCTCTATTGCAAG Experimental SGN-U577046 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|147785329|emb|CAN72849.1| (e_value=6e-49) hypothetical; (*ATH) AT1G10200.1 (e_value=5e-72) Symbol: None | transcription factor LIM, putative, strong similarity to transcription factor Ntlim1 (Nicotiana tabacum) GI:5689136, LIM domain protein WLIM-1 (Helianthus annuus) GI:5070280; contains Pfam profile PF00412: LIM domain | chr1:3346392-33... ; (*SWP) sp|P29675|SF3_HELAN (e_value=7e-37) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3; Solyc12g088320.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62198526-62200434 transcript_region:SL2.40ch12:62198526..62200434- go_terms:GO:0042802 functional_description:"LIM domain protein (AHRD V1 **-- Q306K1_BRANA); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type " 2 2 13 20 opLeV0100000624 sgn|U236499 TTTTTTTGGAAAAGACCAACCCTTGCCCTATGAAAAAAATGTCCCCCAAAGGGGATCCCCTCCCTTTTTT Experimental SGN-U604575 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|37050896|emb|CAE47557.1| (e_value=1e-14) seven-transmembrane-domain protein 1 [Lycopersicon esculentum]; \N \N 2 8 17 20 opLeV0100000625 sgn|U218584 GGCTGGCTGAAAGCTTTGTACTGTCGATGATTTAGAATGAGTCCCCTCGTCAACATTCTAGCGTCTCTGT Experimental SGN-U575214 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|209171772|dbj|BAG74565.1| (e_value=0) alkaline; (*ATH) AT3G57520.1 (e_value=0) Symbol: None | alkaline alpha galactosidase, putative, similar to alkaline alpha galactosidase II (Cucumis melo) GI:29838631; contains Pfam profile PF05691: Raffinose synthase or seed imbibition protein Sip1 | chr3:21299742-21304135 REVERSE | Aliase... ; (*SWP) sp|Q84VX0|Y5740_ARATH (e_value=2e-176) Uncharacterized glycosyltransferase At1g55740 OS=Arabidopsis thaliana GN=At1g55740; Solyc03g058970.2.1 genomic_reference:SL2.40ch03 gene_region:24607756-24618336 transcript_region:SL2.40ch03:24607756..24618336- functional_description:"Alkaline alpha galactosidase (AHRD V1 **-- B5UAS6_TETTT); contains Interpro domain(s) IPR008811 Raffinose synthase " 2 6 17 20 opLeV0100000626 sgn|U216220 GCTGCAACATCAATAAATCCCCAGCTCCGGGTTGAAGCTTTGCAGAACCGTGTGGGTCCTGAAACTGAAA Experimental SGN-U573894 Tomato 200607#2 [68 ESTs aligned] (*GB) gi|157337063|emb|CAO21409.1| (e_value=0) unnamed; (*ATH) AT2G30110.1 (e_value=0) | Symbol: None | ubiquitin activating enzyme 1 (UBA1), E1; identical to GB:U80808 | chr2:12859449-12864694 REVERSE | Aliases: T27E13.15, T27E13_15; (*SWP) sp|P31251|UBE12_WHEAT (e_value=0) Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2; Solyc06g007320.2.1 genomic_reference:SL2.40ch06 gene_region:1338607-1348621 transcript_region:SL2.40ch06:1338607..1348621- go_terms:GO:0006464,GO:0008152,GO:0003824 functional_description:"Ubiquitin-activating enzyme E1 (AHRD V1 ***- B9SKU8_RICCO); contains Interpro domain(s) IPR018075 Ubiquitin-activating enzyme, E1 " 2 4 17 20 opLeV0100000627 sgn|U223399 GGTCACTCAGTTAGGGCATCGACGATTGTGGATTCAAACGAGACTCCGGTAGCAGCACGCGTATCAGAAA Experimental SGN-U563287 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|157357278|emb|CAO63786.1| (e_value=7e-70) unnamed; (*ATH) AT2G20180.2 (e_value=9e-53) | Symbol: None | basic helix-loop-helix (bHLH) family protein, contains Pfam domain, PF00010: Helix-loop-helix DNA-binding domain | chr2:8711112-8713628 REVERSE | Aliases: None; (*SWP) sp|O80536|PIF3_ARATH (e_value=3e-24) Phytochrome-interacting factor 3 OS=Arabidopsis thaliana GN=BHLH8; Solyc06g008030.2.1 genomic_reference:SL2.40ch06 gene_region:1865425-1869982 transcript_region:SL2.40ch06:1865425..1869982- go_terms:GO:0003700,GO:0010313 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding " 2 2 17 20 opLeV0100000628 sgn|U225472 GTGTAAATTTGCGGAGTCATGACCACAATCCATTCCCTCCCTCCCCCATCATCCCACGTCTTGAGTTTTG Experimental SGN-U583242 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|14279184|gb|AAK58522.1|AF263100_1 (e_value=9e-89) putative; (*ATH) AT2G21050.1 (e_value=7e-88) | Symbol: None | amino acid permease, putative, similar to AUX1 (Arabidopsis thaliana) GI:1531758; contains Pfam profile PF01490: Transmembrane amino acid transporter protein | chr2:9041171-9043717 FORWARD | Aliases: F26H11.19, F26H11_19; (*SWP) sp|Q8L883|LAX5_MEDTR (e_value=8e-90) Auxin transporter-like protein 5 OS=Medicago truncatula GN=LAX5; Solyc01g111310.2.1 genomic_reference:SL2.40ch01 gene_region:89353214-89356755 transcript_region:SL2.40ch01:89353214..89356755- go_terms:GO:0015171 functional_description:"Transmembrane amino acid transporter protein (AHRD V1 **** A8NP23_BRUMA); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane " 2 8 1 19 opLeV0100000629 sgn|U227132 ATGCAACTCTGATAAACAGACCTACCGACTCTTCTGCAGAGTCAGGAGTTTGGTGGAACCGTCGGCGTAA Experimental SGN-U566829 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157349828|emb|CAO39684.1| (e_value=5e-60) unnamed; (*ATH) AT4G11400.1 (e_value=2e-42) Symbol: None | ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing protein, similar to BRG1-binding protein ELD/OSA1 (Homo sapiens) GI:18568414; contains Pfam profiles PF01388: ... ; Solyc01g094820.2.1 genomic_reference:SL2.40ch01 gene_region:77988011-77992084 transcript_region:SL2.40ch01:77988011..77992084- go_terms:GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 **-- Q1PEA0_ARATH); contains Interpro domain(s) IPR001606 AT-rich interaction region " 2 6 1 19 opLeV0100000630 sgn|U219856 GAAACCGCAGCCACTTACAATTTGCAAATGGATATTCTTCGCCTAGACTTCAAATCAGGGCTCGAGGCTC Experimental SGN-U565112 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|14423558|gb|AAK62461.1|AF387016_1 (e_value=2e-176) putative; (*ATH) AT5G03430.1 (e_value=2e-178) Symbol: None | phosphoadenosine phosphosulfate (PAPS) reductase family protein, low similarity to SP:P38913 FAD synthetase (EC 2.7.7.2) {Saccharomyces cerevisiae}; contains Pfam profiles PF01507: Phosphoadenosine phosphosulfate reductase family, PF0... ; (*SWP) sp|Q8NFF5|FAD1_HUMAN (e_value=3e-39) FAD synthetase OS=Homo sapiens GN=FLAD1; Solyc10g083960.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62978820-62988839 transcript_region:SL2.40ch10:62978820..62988839+ go_terms:GO:0008152,GO:0006777 functional_description:"Phosphoadenosine phosphosulfate reductase domain containing protein (AHRD V1 *--- C5PEQ4_COCP7); contains Interpro domain(s) IPR002500 Phosphoadenosine phosphosulphate reductase " 2 4 1 19 opLeV0100000631 sgn|U233480 GGTGAGAACAAATCAATGATGTATTGTGAATCAGATCAAGCTAACCTTTGCTGGGATTGCCATTCGAAAG Experimental SGN-U572381 Tomato 200607#2 [42 ESTs aligned] (*GB) gi|157328537|emb|CAO21248.1| (e_value=3e-27) unnamed; (*ATH) AT4G27310.1 (e_value=3e-26) | Symbol: None | zinc finger (B-box type) family protein, zinc-finger protein S3574, Oryza sativa, PIR3:JE0113 | chr4:13675644-13676916 FORWARD | Aliases: M4I22.120, M4I22_120; (*SWP) sp|Q9SSE5|COL9_ARATH (e_value=3e-11) Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9; Solyc10g006750.2.1 genomic_reference:SL2.40ch10 gene_region:1205986-1206786 transcript_region:SL2.40ch10:1205986..1206786- go_terms:GO:0005622 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *--- D0EP04_SOYBN); contains Interpro domain(s) IPR000315 Zinc finger, B-box " 4 8 13 20 opLeV0100000632 sgn|U225856 GTTCTTGTTTATTTTCAAAGCTCATTAGTCGTGTTTCGGGTAGCTTTCAAGTTGCTCTTTTCGTGGTTGT Experimental SGN-U571225 Tomato 200607#2 [3 ESTs aligned] Solyc04g025550.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:21513335-21513490 transcript_region:SL2.40ch04:21513335..21513490+ functional_description:"Unknown Protein (AHRD V1)" 4 6 13 20 opLeV0100000633 sgn|U242038 AACACTAGACACATCTGATGAGCGTCAGCTGTAGCATTAGCGATCATCGCTTTTGCAATCAGGGGAAATT Experimental SGN-U581868 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157341599|emb|CAO62154.1| (e_value=2e-85) unnamed; (*ATH) AT5G16760.1 (e_value=9e-72) | Symbol: None | Encodes a inositol 1,3,4-trisphosphate 5/6-kinase. | chr5:5509677-5511235 FORWARD | Aliases: F5E19.100, F5E19_100, INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE; (*SWP) sp|Q84Y01|ITPK1_MAIZE (e_value=2e-74) Inositol-tetrakisphosphate 1-kinase 1 OS=Zea mays GN=ITPK1; Solyc03g097410.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:53185449-53186414 transcript_region:SL2.40ch03:53185449..53186414+ go_terms:GO:0004428 functional_description:"Inositol-tetrakisphosphate 1-kinase 1 (AHRD V1 **** B6TJ44_MAIZE); contains Interpro domain(s) IPR008656 Inositol 1, 3, 4-trisphosphate 56-kinase " 4 4 13 20 opLeV0100000634 sgn|U226089 TCTTAGCACAACGCCACGAAGGAGGACGGGGAAGAAGGATAGACATAGCAAGATTTGCACTGCTCAAGGT Experimental SGN-U583072 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|37726688|gb|AAO45726.1| (e_value=2e-34) TCP protein [Lycopersicon esculentum]; (*ATH) AT1G68800.1 (e_value=2e-25) Symbol: None | TCP family transcription factor, putative, similar to cyc2 protein (Misopates orontium); residues 80 to 140 nearly identical to cyc1a protein (nuclear flower development gene cycloidea) GB:AAF07239 (Antirrhinum siculum) | chr1:2585111... ; (*SWP) sp|A0AQW4|TCP12_ARATH (e_value=1e-24) Transcription factor TCP12 OS=Arabidopsis thaliana GN=TCP12; Solyc04g006980.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:687298-688425 transcript_region:SL2.40ch04:687298..688425- functional_description:"CYCLOIDEA-like group 1B protein (Fragment) (AHRD V1 *-*- Q6VM90_LUPAG); contains Interpro domain(s) IPR005333 Transcription factor, TCP " 4 2 13 20 opLeV0100000635 sgn|U230718 GAGCAAGGAGCTAAGAGAGGTAGGTTATGTTCCAAGAACAGAATACGTTCTATTTGACATCGAAGAGGAG Experimental SGN-U572790 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157355422|emb|CAO48812.1| (e_value=1e-61) unnamed; (*ATH) AT3G08820.1 (e_value=6e-54) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr3:2677124-2679185 REVERSE | Aliases: T16O11.25; (*SWP) sp|Q9FRI5|PPR57_ARATH (e_value=7e-40) Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74; Solyc09g009790.2.1 genomic_reference:SL2.40ch09 gene_region:3264032-3266983 transcript_region:SL2.40ch09:3264032..3266983- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L781_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat " 4 6 17 20 opLeV0100000636 sgn|U217909 CTCTTCCTATTGTACTCAATTTCCTAGCAAAAAAGGATAGGAAAAATGTTATGCCACCTGGTCCTTTAGG Experimental SGN-U577528 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|85068658|gb|ABC69409.1| (e_value=2e-89) CYP71AT2v2; (*ATH) AT4G31500.1 (e_value=4e-54) | Symbol: None | cytochrome P450 83B1 (CYP83B1), Identical to Cytochrome P450 (SP:O65782 )(Arabidopsis thaliana) | chr4:15273477-15275316 REVERSE | Aliases: F3L17.70, F3L17_70; (*SWP) sp|O65782|C83B1_ARATH (e_value=4e-53) Cytochrome P450 83B1 OS=Arabidopsis thaliana GN=CYP83B1; Solyc09g092600.2.1 genomic_reference:SL2.40ch09 gene_region:66968741-66970627 transcript_region:SL2.40ch09:66968741..66970627+ go_terms:GO:0019825 functional_description:"Cytochrome P450" 4 4 17 20 opLeV0100000637 sgn|U215864 GTTGCGGAAAGTGTTAAAGAAGCTGAAGAAACTTGTGCGGAGGATCCGGTGAGCGGCGAGTGTAAGGCGG Experimental SGN-U565998 Tomato 200607#2 [50 ESTs aligned] (*GB) gi|1617197|emb|CAA96569.1| (e_value=3e-34) CP12; (*ATH) AT3G62410.1 (e_value=3e-26) | Symbol: None | CP12 domain-containing protein, contains Pfam domain PF02672: CP12 domain | chr3:23101920-23102538 FORWARD | Aliases: T12C14.110; (*SWP) sp|A6Q0K5|CP12_CHLRE (e_value=6e-12) Calvin cycle protein CP12 OS=Chlamydomonas reinhardtii GN=cp12; Solyc06g009630.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:3584164-3584547 transcript_region:SL2.40ch06:3584164..3584547+ go_terms:GO:0005515 functional_description:"CP12 (AHRD V1 ***- O24136_TOBAC); contains Interpro domain(s) IPR003823 Protein of unknown function CP12 " 4 2 17 20 opLeV0100000638 sgn|U225741 TTTCAGTATCGTCCATGTATCTTTCGAGGCTTGACTGAGCTGTACAGATTTTGGTCAATATGTACAAGTT Experimental SGN-U564543 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157345957|emb|CAO15654.1| (e_value=1e-165) unnamed; (*ATH) AT5G02250.1 (e_value=2e-160) | Symbol: EMB2730 | ribonuclease II family protein, contains Pfam profile PF00773: RNB-like protein | chr5:454783-459525 FORWARD | Aliases: T1E22.10, T1E22_10, EMB2730, EMBRYO DEFECTIVE 2730; (*SWP) sp|P73177|RN2H_SYNY3 (e_value=7e-64) Uncharacterized ribonuclease sll1290 OS=Synechocystis sp. (strain PCC 6803) GN=sll1290; \N \N 4 8 1 19 opLeV0100000639 sgn|U215244 TTGTGTCAATAGAGACGTCTATAGCGCCCCAATCAGCTCCGTAGAGGACGGATGTAGGGCGGACGTGGAG Experimental SGN-U572385 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|157351117|emb|CAO41274.1| (e_value=3e-87) unnamed; (*ATH) AT1G11360.2 (e_value=6e-80) Symbol: None | universal stress protein (USP) family protein, contains Pfam PF00582: universal stress protein family domain; similar to ethylene-responsive ER6 protein (GI:5669654) (Lycopersicon esculentum) | chr1:3821529-3823053 REVERSE | Aliases: ... ; Solyc03g006680.2.1 genomic_reference:SL2.40ch03 gene_region:1252982-1257852 transcript_region:SL2.40ch03:1252982..1257852+ go_terms:GO:0006950 functional_description:"Universal stress protein (AHRD V1 **-- D6BRD7_9ROSI); contains Interpro domain(s) IPR006016 UspA " 4 6 1 19 opLeV0100000640 sgn|U226447 GAGTGGGTGCAACAATCATGGACGAGTGAGGAATGCAGGCTTCATTGAACAATTATCCTTGCCAAGCTAG Experimental SGN-U571940 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157335212|emb|CAO61042.1| (e_value=2e-36) unnamed; Solyc04g081100.2.1 genomic_reference:SL2.40ch04 gene_region:62733558-62743254 transcript_region:SL2.40ch04:62733558..62743254- functional_description:"Amine oxidase (AHRD V1 *-*- A4RUP0_OSTLU); contains Interpro domain(s) IPR002937 Amine oxidase " 4 2 1 19 opLeV0100000641 sgn|U221750 GGATCATGATCATCGTACTAAGGATGGTGAGGTTGGTGGCAAGCCGGCCTGGCTTCGACCAAATATCCTG Experimental SGN-U585013 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|157356520|emb|CAO62707.1| (e_value=0) unnamed; (*ATH) AT4G32250.1 (e_value=0) | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr4:15570050-15572613 REVERSE | Aliases: F10M6.110, F10M6_110; (*SWP) sp|O14299|WIS4_SCHPO (e_value=4e-15) MAP kinase kinase kinase wis4 OS=Schizosaccharomyces pombe GN=wis4; Solyc01g005030.2.1 genomic_reference:SL2.40ch01 gene_region:47011-54276 transcript_region:SL2.40ch01:47011..54276+ go_terms:GO:0006468,GO:0016021 functional_description:"Serine/threonine-protein kinase 36 (AHRD V1 *-*- STK36_HUMAN); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) " 2 8 14 20 opLeV0100000642 sgn|U219533 GTAAAGGTACAAACGCTGCACACATTCTGTGGAGGATGGTCGGCATTTGTCCGGGAGAATGACATCCAGA Experimental SGN-U582715 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157335438|emb|CAO61268.1| (e_value=7e-152) unnamed; (*ATH) AT5G66980.1 (e_value=4e-13) | Symbol: None | transcriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain | chr5:26758789-26760052 FORWARD | Aliases: K8A10.5, K8A10_5; Solyc04g079590.2.1 genomic_reference:SL2.40ch04 gene_region:61597480-61603476 transcript_region:SL2.40ch04:61597480..61603476+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os03g0619600 (AHRD V1 ***- Y3196_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 " 2 6 14 20 opLeV0100000643 sgn|U239016 CAAACGGTCTTTTCTTGCCCCCAATTGCCACCCCCGCAAAGGCTTTACCAGGAGGAAATCCTTGAAACCT Experimental SGN-U598699 Tomato 200607#2 [1 ESTs aligned] \N \N 2 4 14 20 opLeV0100000644 sgn|U216771 GTTTCACTCAGATCTATCCGTGAAGGCAGACATCAGACTCTAGACCAGTGCCTAAGGCGTGAGTATCGAA Experimental SGN-U583097 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|157344831|emb|CAO70586.1| (e_value=2e-154) unnamed; (*ATH) AT3G60510.1 (e_value=2e-142) Symbol: None | enoyl-CoA hydratase/isomerase family protein, similar to enoyl-CoA-hydratase, Avicennia marina, EMBL:AF190450 (GI:6014701), CoA-thioester hydrolase CHY1 from Arabidopsis thaliana (GI:8572760); contains Pfam profile PF00378 enoyl-CoA h... ; (*SWP) sp|Q58EB4|HIBCH_DANRE (e_value=1e-64) 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio GN=hibch; Solyc01g090700.2.1 genomic_reference:SL2.40ch01 gene_region:76099361-76107876 transcript_region:SL2.40ch01:76099361..76107876- go_terms:GO:0008152 functional_description:"Enoyl-CoA-hydratase (AHRD V1 ***- Q9SE41_AVIMR); contains Interpro domain(s) IPR001753 Crotonase, core " 2 2 14 20 opLeV0100000645 sgn|U226529 TCAAACAACTCGACTGCCTCATTTATTGCATACCGCTGTACACAAGCAAGCCCCATTTGGTTAAGGGCGA Experimental SGN-U566387 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157342226|emb|CAO64339.1| (e_value=0) unnamed; (*ATH) AT1G27500.1 (e_value=0) | Symbol: None | kinesin light chain-related, low similarity to kinesin light chain (Plectonema boryanum) GI:2645229; contains Pfam profile PF00515 TPR Domain | chr1:9551438-9554126 REVERSE | Aliases: F17L21.29, F17L21_29; (*SWP) sp|Q7Z494|NPHP3_HUMAN (e_value=3e-12) Nephrocystin-3 OS=Homo sapiens GN=NPHP3; Solyc03g114320.2.1 genomic_reference:SL2.40ch03 gene_region:58383943-58387290 transcript_region:SL2.40ch03:58383943..58387290+ go_terms:GO:0005488 functional_description:"Kinesin light chain (AHRD V1 ***- B6SPN7_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical " 2 8 18 20 opLeV0100000646 sgn|U226537 GTGAGAATCTGTTGGTAAATATGCGGGATCCACATCGACCTGTCTGCAAGATTGGTGATCTTGGCCTATC Experimental SGN-U577114 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157352265|emb|CAO43293.1| (e_value=1e-136) unnamed; (*ATH) AT5G57610.1 (e_value=2e-136) Symbol: None | protein kinase family protein, similar to protein kinase (Glycine max) GI:170047, MAP3K delta-1 protein kinase (Arabidopsis thaliana) GI:2253010; contains Pfam profile: PF00069 Eukaryotic protein kinase domain | chr5:23342533-23346573... ; (*SWP) sp|Q05609|CTR1_ARATH (e_value=1e-39) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1; Solyc07g006760.2.1 genomic_reference:SL2.40ch07 gene_region:1599263-1605156 transcript_region:SL2.40ch07:1599263..1605156- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR001245 Tyrosine protein kinase " 2 6 18 20 opLeV0100000647 sgn|U219894 TGGAATATTATTTGCCCTCAACGCTCTATAACCGATGTGATCGCGCTCATCGAGTGTTCTACGGGCTGAT Experimental SGN-U584374 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157358740|emb|CAO66425.1| (e_value=5e-16) unnamed; (*ATH) AT3G05490.1 (e_value=6e-16) | Symbol: None | rapid alkalinization factor (RALF) family protein, similar to RALF precursor (Nicotiana tabacum) GI:16566316 | chr3:1591283-1591989 FORWARD | Aliases: F22F7.6, F22F7_6; \N \N 2 4 18 20 opLeV0100000648 sgn|U217302 GTGGAGGTTATGGAGGTGGATATTGCTCCTATGGTTGTTGTGAAAGGAATTACTATGGTAATGGTTGCAA Experimental SGN-U584514 Tomato 200607#2 [28 ESTs aligned] Solyc09g092720.2.1 genomic_reference:SL2.40ch09 gene_region:67012178-67019762 transcript_region:SL2.40ch09:67012178..67019762+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010800 Glycine rich " 2 2 18 20 opLeV0100000649 sgn|U226360 CAAAACAAACTCGAAACCATCCTACCTCCGAGCTATTGAACGAAGATCCAGGGGAGACGTTGAGCTTAAC Experimental SGN-U583839 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|231357|sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate; (*ATH) AT3G61510.1 (e_value=2e-168) Symbol: None | 1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative, similar to ACC synthases from Citrus sinensis (GI:6434142), Cucumis melo (GI:695402), Cucumis sativus (GI:3641645) | chr3:22774470-22776705 REVERSE | Alias... ; (*SWP) sp|P29535|1A14_SOLLC (e_value=0) 1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum lycopersicum GN=ACS4; Solyc05g050010.2.1 genomic_reference:SL2.40ch05 gene_region:59035052-59037966 transcript_region:SL2.40ch05:59035052..59037966+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q659H5_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site " 2 6 2 19 opLeV0100000650 sgn|U212930 TAAGTTCGCCGGAGAAAGAGAGTCGAAGCTACAGAATTTCAGTTCGCCGC Experimental SGN-U592552 Tomato 200607#2 [1 ESTs aligned] Solyc09g075210.2.1 genomic_reference:SL2.40ch09 gene_region:62481770-62483310 transcript_region:SL2.40ch09:62481770..62483310+ go_terms:GO:0006950 functional_description:"Late embryogenesis abundant protein 5 (AHRD V1 ***- Q1HGG0_9ROSI); contains Interpro domain(s) IPR004926 Late embryogenesis abundant protein 3 " 2 4 2 19 opLeV0100000651 sgn|U228031 GGCAAATCAATGGCAGCAACTTCAGTACACAAGTTTGCTCAGTGCATTTCTTGCCATGCTTGGAGTCCCG Experimental SGN-U564443 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157344561|emb|CAO69944.1| (e_value=7e-111) unnamed; (*ATH) AT2G30910.1 (e_value=1e-110) Symbol: ARPC1A | transducin family protein / WD-40 repeat family protein, contains 6 WD-40 repeats (PF00400) (1 weak); similar to ARP2/3 complex 41 kDa subunit (P41-ARC) (Actin-related protein 2/3 complex subunit 1B) (SP:O88656) (Rattus norvegicus) ... ; (*SWP) sp|O96622|ARPC1_DICDI (e_value=7e-62) Actin-related protein 2/3 complex subunit 1 OS=Dictyostelium discoideum GN=arcA; Solyc05g006470.2.1 genomic_reference:SL2.40ch05 gene_region:1097268-1107650 transcript_region:SL2.40ch05:1097268..1107650+ go_terms:GO:0000166,GO:0051015 functional_description:"Actin-related protein 2/3 complex subunit 1B (AHRD V1 **** B6TA39_MAIZE); contains Interpro domain(s) IPR017383 Actin-related protein 2/3 complex, subunit 1 " 2 2 2 19 opLeV0100000652 sgn|U214750 CCCAGAAATCACTATGACCAAGTGCAGTCGAGAAAGCTTCAGCTGTTCACCCACACACTTTCCCTTCTTT Experimental SGN-U567267 Tomato 200607#2 [42 ESTs aligned] (*GB) gi|157336452|emb|CAO71137.1| (e_value=0) unnamed; (*ATH) AT3G05970.1 (e_value=0) Symbol: None | long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase (LACS6), strong similarity to AMP-binding protein (MF39P) gi:1617274 from Brassica napus, similar to putative long-chain-fatty-acid--CoA ligase (brain isozyme) GB:P331... ; (*SWP) sp|P33121|ACSL1_HUMAN (e_value=3e-137) Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1; Solyc01g099100.2.1 genomic_reference:SL2.40ch01 gene_region:81175913-81191684 transcript_region:SL2.40ch01:81175913..81191684+ go_terms:GO:0008152 functional_description:"Long-chain-fatty-acid coa ligase (AHRD V1 ***- Q16WF9_AEDAE); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase " 4 8 14 20 opLeV0100000653 sgn|U215017 TCAGGTTAAACGAGCCAGGATGCACAACAAAAAAGCAGGGCTTGATTCACTTTGCGAAGTTGTTTGCGGG Experimental SGN-U581138 Tomato 200607#2 [59 ESTs aligned] (*GB) gi|2246454|gb|AAB62808.1| (e_value=0) S-adenosyl-methionine-sterol-C- methyltransferase [Nicotiana tabacum]; (*ATH) AT1G20330.1 (e_value=2e-178) | Symbol: None | S-adenosyl-methionine-sterol-C-methyltransferase, identical to sterol-C-methyltransferase GI:1061040 from (Arabidopsis thaliana) | chr1:7038680-7040149 REVERSE | Aliases: F14O10.7, F14O10_7; (*SWP) sp|Q39227|SMT2_ARATH (e_value=2e-177) 24-methylenesterol C-methyltransferase 2 OS=Arabidopsis thaliana GN=SMT2; Solyc01g111830.2.1 genomic_reference:SL2.40ch01 gene_region:89755518-89756913 transcript_region:SL2.40ch01:89755518..89756913- go_terms:GO:0003838 functional_description:"24-sterol C-methyltransferase (AHRD V1 **** B0FDL7_GOSHI); contains Interpro domain(s) IPR013705 Sterol methyltransferase C-terminal " 4 6 14 20 opLeV0100000654 sgn|U216170 ATTCACCGATGAACACAAGGCATGGCAACAGTTACGGAGGGGGCGCTATGTGGAATTCAACTTGGTTTAT Experimental SGN-U579744 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|2493810|sp|Q42946|HEM6_TOBAC (e_value=1e-176) Coproporphyrinogen III oxidase, chloroplast precursor (Coproporphyrinogenase) (Coprogen oxidase); (*ATH) AT1G03475.1 (e_value=2e-157) Symbol: None | coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative, similar to coproporphyrinogen III oxidase, chloroplast (precursor) from Glycine max (SP:P35055), Nicotiana tabacum (SP:Q42946), H... ; (*SWP) sp|Q42946|HEM6_TOBAC (e_value=7e-178) Coproporphyrinogen III oxidase, chloroplastic OS=Nicotiana tabacum GN=CPX; Solyc10g005110.2.1 genomic_reference:SL2.40ch10 gene_region:96242-103626 transcript_region:SL2.40ch10:96242..103626- go_terms:GO:0042803 functional_description:"Coproporphyrinogen III oxidase aerobic (AHRD V1 ***- A9DTF4_9FLAO); contains Interpro domain(s) IPR001260 Coproporphyrinogen III oxidase " 4 4 14 20 opLeV0100000655 sgn|U220461 AGACATCTAAGGCTATGACATGGATCTCCTTTCCAAATCTTTTGCCCTATTGTGTAAGGAATCCTGATTT Experimental SGN-U574445 Tomato 200607#2 [5 ESTs aligned] \N \N 4 2 14 20 opLeV0100000656 sgn|U214207 GACCTGCAGGCTCTCAAAGGTGCTGGTCAAATATGGCTGCTGTCAAATTTTGACTCCCAGGAAGACATCG Experimental SGN-U578059 Tomato 200607#2 [47 ESTs aligned] (*GB) gi|157357217|emb|CAO63711.1| (e_value=2e-103) unnamed; (*ATH) AT4G20330.1 (e_value=6e-77) | Symbol: None | transcription initiation factor-related, contains weak similarity to Transcription initiation factor IIE, beta subunit (TFIIE-beta) (Swiss-Prot:P29084) (Homo sapiens) | chr4:10982528-10984526 REVERSE | Aliases: F9F13.2, F9F13_2; (*SWP) sp|Q54KJ8|T2EB_DICDI (e_value=1e-13) General transcription factor IIE subunit 2 OS=Dictyostelium discoideum GN=gtf2e2; Solyc06g064890.2.1 genomic_reference:SL2.40ch06 gene_region:36836320-36839870 transcript_region:SL2.40ch06:36836320..36839870- functional_description:"Transcription initiation factor IIE subunit beta (AHRD V1 ***- B6JXL9_SCHJY); contains Interpro domain(s) IPR017935 Transcription factor TFIIE beta subunit-like, DNA-binding " 4 8 18 20 opLeV0100000657 sgn|U240889 ATCTGACAGGGGATAGGGAATTGCTGGAACTTCCTTGCTGTTTCCAATCTTAAAAATAGCAGCGACTCCT Experimental SGN-U600553 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157355631|emb|CAO49448.1| (e_value=4e-46) unnamed; (*ATH) AT1G63700.1 (e_value=2e-43) | Symbol: None | protein kinase, putative, contains protein kinase domain, Pfam:PF00069; similar to MEK kinase (MAP3Ka) (Arabidopsis thaliana) gi:4204912:gb:AAD10848 | chr1:23628871-23632694 REVERSE | Aliases: F24D7.11, F24D7_11; (*SWP) sp|O22040|ANP1_ARATH (e_value=3e-22) Mitogen-activated protein kinase kinase kinase ANP1 OS=Arabidopsis thaliana GN=ANP1; Solyc08g081210.2.1 genomic_reference:SL2.40ch08 gene_region:61435787-61442377 transcript_region:SL2.40ch08:61435787..61442377- go_terms:GO:0016301 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 4 6 18 20 opLeV0100000658 sgn|U241993 CATGGGGCCCAAAAGGGGGGCTTTTAACATTGTTGATTCTGACCCCCTCTTGGACAAATGAGTTTACAAA Experimental SGN-U584993 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157341250|emb|CAO49157.1| (e_value=4e-96) unnamed; (*ATH) AT3G02100.1 (e_value=2e-70) | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr3:368847-370491 REVERSE | Aliases: F1C9.11, F1C9_11; (*SWP) sp|P0C7P7|Y1567_ARATH (e_value=2e-38) Probable UDP-glucosyl transferase At1g05670 OS=Arabidopsis thaliana GN=At1g05670; \N \N 4 4 18 20 opLeV0100000659 sgn|U218895 GGAGTTTAACATCTGGGTGGTTTTGCCTGGAATCGACACTTCTTGCTCTGGCAATCAGCGGTACAGCAAT Experimental SGN-U575161 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|157344688|emb|CAO70443.1| (e_value=8e-151) unnamed; (*ATH) AT2G44520.1 (e_value=2e-138) Symbol: None | UbiA prenyltransferase family protein, similar to SP:Q12887 Protoheme IX farnesyltransferase, mitochondrial precursor (EC 2.5.1.-) (Heme O synthase) {Homo sapiens}, SP:P21592 COX10 {Saccharomyces cerevisiae} | chr2:18386651-18389018 F... ; (*SWP) sp|Q8CFY5|COX10_MOUSE (e_value=8e-49) Protoheme IX farnesyltransferase, mitochondrial OS=Mus musculus GN=Cox10; Solyc01g080860.2.1 genomic_reference:SL2.40ch01 gene_region:72686531-72695319 transcript_region:SL2.40ch01:72686531..72695319- go_terms:GO:0016021 functional_description:"Protoheme IX farnesyltransferase (AHRD V1 ***- B6TRR8_MAIZE); contains Interpro domain(s) IPR006369 Protohaem IX farnesyltransferase " 4 2 18 20 opLeV0100000660 sgn|U215827 GGTGTGTCCTTCTTGTGTTGGTAGCAAGTATAGCATGTGTAATATTGTGTTGTTGCAACTTGTAAGAGAG Experimental SGN-U578306 Tomato 200607#2 [35 ESTs aligned] (*GB) gi|77744859|gb|ABB02383.1| (e_value=2e-100) temperature-induced; (*ATH) AT5G58070.1 (e_value=2e-77) | Symbol: None | lipocalin, putative, similar to temperature stress-induced lipocalin (Triticum aestivum) GI:18650668 | chr5:23517287-23518435 REVERSE | Aliases: K21L19.9, K21L19_9; (*SWP) sp|Q46036|BLC_CITFR (e_value=1e-17) Outer membrane lipoprotein blc OS=Citrobacter freundii; Solyc07g005210.2.1 genomic_reference:SL2.40ch07 gene_region:202269-203546 transcript_region:SL2.40ch07:202269..203546- go_terms:GO:0005515,GO:0005319 functional_description:"Outer membrane lipoprotein blc (AHRD V1 **-- D0RZG9_ACICA); contains Interpro domain(s) IPR002345 Lipocalin " 4 8 2 19 opLeV0100000661 sgn|U226657 GCTGAACTTGATTATCTGACGGGGAGTCCAACTAAGGCCGATGTTCTGGAGAGGGCTGAAGGGATCAAGA Experimental SGN-U576415 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|157345305|emb|CAO14603.1| (e_value=0) unnamed; (*ATH) AT5G14260.3 (e_value=0) Symbol: None | SET domain-containing protein, low similarity to ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I (Spinacia oleracea) GI:3403236; contains Pfam profile PF00856: SET domain | chr5:4600999-4604450 FORW... ; (*SWP) sp|Q86TU7|SETD3_HUMAN (e_value=6e-19) SET domain-containing protein 3 OS=Homo sapiens GN=SETD3; Solyc02g068050.2.1 genomic_reference:SL2.40ch02 gene_region:32674393-32677699 transcript_region:SL2.40ch02:32674393..32677699- functional_description:"SET domain-containing protein (AHRD V1 ***- D7M620_ARALY); contains Interpro domain(s) IPR001214 SET " 4 6 2 19 opLeV0100000662 sgn|U218276 CTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATG Experimental SGN-U577268 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157342708|emb|CAO65420.1| (e_value=1e-158) unnamed; (*ATH) AT4G26270.1 (e_value=2e-156) | Symbol: None | phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: Phosphofructokinase | chr4:13300804-13304356 REVERSE | Aliases: T25K17.80, T25K17_80; (*SWP) sp|Q94AA4|K6PF3_ARATH (e_value=2e-155) 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3; Solyc12g095880.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63327094-63335562 transcript_region:SL2.40ch12:63327094..63335562- go_terms:GO:0006096,GO:0005945 functional_description:"Phosphofructokinase family protein (AHRD V1 ***- D7MLU4_ARALY); contains Interpro domain(s) IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108 " 4 4 2 19 opLeV0100000663 sgn|U242624 ATAACCCCAGGGCGATCAAGGGGGTGGTCTCTTGGCTCTGGGGCAAGAAGGGCACTTGTAATGCTTGATA Experimental SGN-U587937 Tomato 200607#2 [1 ESTs aligned] \N \N 4 2 2 19 opLeV0100000664 sgn|U213104 TGGGGGACTTGGAGCTGTTGCTGCTGGTGCCTTTGCTTTGCATGAGAAGC Experimental SGN-U580787 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|68500726|gb|AAY98032.1| (e_value=4e-84) ASR4; (*SWP) sp|P18899|DDR48_YEAST (e_value=1e-17) Stress protein DDR48 OS=Saccharomyces cerevisiae GN=DDR48; Solyc04g071620.2.1 genomic_reference:SL2.40ch04 gene_region:56178656-56180338 transcript_region:SL2.40ch04:56178656..56180338+ go_terms:GO:0006950 functional_description:"ASR4 (Fragment) (AHRD V1 *-*- Q2QJU1_SOLLC); contains Interpro domain(s) IPR003496 ABA/WDS induced protein " 2 8 15 20 opLeV0100000665 Z24742 ACTTATGGAGTCTATTTCCATGGTCATTTCCGTTGTTCGAATTGGTTTTTGGTTACTGATATGATGCGCT Experimental \N \N \N \N 2 6 15 20 opLeV0100000666 sgn|U222316 CAGCACCTGCTAGCTGGGTTAAGCGACAAGCTCTGGATAAGGAAACTGATTTCAGCTTACTGGGAAAACA Experimental SGN-U579438 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|85069279|gb|ABC69711.1| (e_value=0) auxin; (*ATH) AT5G62000.2 (e_value=0) Symbol: None | transcriptional factor B3 family protein / auxin-responsive factor, putative (ARF1), contains Pfam profile: PF02362 B3 DNA binding domain; identical to cDNA ARF1 (auxin response factor) binding protein GI:2245393 | chr5:24927608-24932... ; (*SWP) sp|Q94JM3|ARFB_ARATH (e_value=0) Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2; Solyc12g042070.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42539933-42544628 transcript_region:SL2.40ch12:42539933..42544628- go_terms:GO:0005634,GO:0006355,GO:0046983 functional_description:"Auxin response factor 2 (AHRD V1 ***- Q2LAJ3_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor " 2 4 15 20 opLeV0100000667 sgn|U214034 CCAAGCATCCGAGCCAGAGCAGCATGAACCGCAATAGTAACTTGAGCTTCCATATATTCCCGAATATCCA Experimental SGN-U577567 Tomato 200607#2 [68 ESTs aligned] (*GB) gi|40287500|gb|AAR83864.1| (e_value=8e-19) 28 kDa small subunit ribosomal protein [Capsicum annuum]; (*ATH) AT5G64140.1 (e_value=3e-16) | Symbol: None | 40S ribosomal protein S28 (RPS28C) | chr5:25684550-25685518 REVERSE | Aliases: MHJ24.12, MHJ24_12; (*SWP) sp|P46302|RS28_MAIZE (e_value=4e-16) 40S ribosomal protein S28 OS=Zea mays GN=RPS28; Solyc07g021650.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:20540534-20540692 transcript_region:SL2.40ch07:20540534..20540692+ functional_description:"Unknown Protein (AHRD V1)" 2 2 15 20 opLeV0100000668 sgn|U226373 GGACCGGTAGCTGGCCGAGCAGCAGAGCTCGAGGGTGAACAGTCTCGGCTGCAGCATGATCTCATAACTT Experimental SGN-U570690 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|147816954|emb|CAN71058.1| (e_value=1e-23) hypothetical; (*ATH) AT1G06530.1 (e_value=1e-21) Symbol: None | myosin heavy chain-related, similar to myosin heavy chain (GI:1408194) {Placopecten magellanicus}; similar to Myosin heavy chain, clone 203 (Fragment) (SP:P39922){Hydra attenuata}; contains one transmembrane domain | chr1:2001593-2002... ; Solyc10g007780.1.1 evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:2014736-2015443 transcript_region:SL2.40ch10:2014736..2015443+ functional_description:"Unknown Protein (AHRD V1)" 2 8 19 20 opLeV0100000669 sgn|U227588 ATCGCCGTACACTTGGTCTTCTTCTTCTCAGAGGTGAAGAAGTTATTTCCATGACTGTTGAAGGTCCTCC Experimental SGN-U588696 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15241519|ref|NP_199263.1| (e_value=3e-27) small nuclear ribonucleoprotein, putative (snRNP) [Arabidopsis thaliana]; (*ATH) AT4G20440.1 (e_value=4e-29) Symbol: SMB | small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative, similar to SP:Q05856 Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) {Drosophila me... ; (*SWP) sp|P91918|RSMB_CAEEL (e_value=2e-16) Probable small nuclear ribonucleoprotein-associated protein B OS=Caenorhabditis elegans GN=snr-2; Solyc05g049950.2.1 genomic_reference:SL2.40ch05 gene_region:58942079-58944803 transcript_region:SL2.40ch05:58942079..58944803+ functional_description:"Small nuclear ribonucleoprotein-associated protein B (AHRD V1 *-*- B6T3Z9_MAIZE); contains Interpro domain(s) IPR017131 Small ribonucleoprotein associated, SmB/SmN " 2 6 19 20 opLeV0100000670 sgn|U213000 TGGAATGGGTGCTGCTGCAGTCTTTGAAAGAGGAGACTCCTGCGATGAGCTACGCAACGCCCGTAAAATT Experimental SGN-U579889 Tomato 200607#2 [203 ESTs aligned] (*GB) gi|147866537|emb|CAN81585.1| (e_value=0) hypothetical; (*ATH) AT2G33150.1 (e_value=0) Symbol: None | acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative, similar to 3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from (Arabidopsis thaliana) GI:2981616, (Cucumis sativus) GI:393707, (Cucurbita cv. Kurokawa Amakuri) GI:16... ; (*SWP) sp|Q56WD9|THIK2_ARATH (e_value=0) 3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1; Solyc09g091470.2.1 genomic_reference:SL2.40ch09 gene_region:66090647-66095664 transcript_region:SL2.40ch09:66090647..66095664+ go_terms:GO:0003985 functional_description:"3-ketoacyl CoA thiolase 2 (AHRD V1 **** C8YNG7_PETHY); contains Interpro domain(s) IPR002155 Thiolase " 2 4 19 20 opLeV0100000671 sgn|U213739 TGATCATGGTTTTCGCCCGTTAACATTAGTGGCTACTTCTACGGGATCATCCAGAACTAGAAGTATAGAT Experimental SGN-U577979 Tomato 200607#2 [58 ESTs aligned] (*GB) gi|157328180|emb|CAO17291.1| (e_value=0) unnamed; (*ATH) AT1G02205.2 (e_value=0) | Symbol: None | CER1 protein, identical to maize gl1 homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467 from (Arabidopsis thaliana) | chr1:418778-422438 FORWARD | Aliases: None; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=3e-100) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2; Solyc01g088400.2.1 genomic_reference:SL2.40ch01 gene_region:74964023-74968482 transcript_region:SL2.40ch01:74964023..74968482+ go_terms:GO:0009924 functional_description:"CER1 (AHRD V1 **-- B6TFH3_MAIZE); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase " 2 2 19 20 opLeV0100000672 sgn|U238045 AAACGGGGATGGGTATAAATGCTGTTGCATCACCGGCCCATGCTTTTTGGGGGGCAAATAGGGGGGAAAA Experimental SGN-U600397 Tomato 200607#2 [1 ESTs aligned] \N \N 2 8 3 19 opLeV0100000673 sgn|U216894 AGGCGGCCTAGCGTGACAATTTTCGTTAGCACACATCATAGCGATCCTAAAATACTCAACCACTGCACTT Experimental SGN-U576606 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|147842499|emb|CAN65219.1| (e_value=8e-107) hypothetical; (*ATH) AT5G42440.1 (e_value=4e-96) | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr5:16990532-16991802 REVERSE | Aliases: MDH9.13, MDH9_13; (*SWP) sp|Q9LYN8|EXS_ARATH (e_value=2e-67) Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS; Solyc04g071870.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:56476110-56477255 transcript_region:SL2.40ch04:56476110..56477255+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding/protein serine/threonine kinase (AHRD V1 **** C6FF68_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 2 6 3 19 opLeV0100000674 sgn|U219176 GCACCGTGAGTGACTCTGCCGTTGAGAGTATTGGGATCTATCTCAAGCCATTCGTCATCAACTTGAAAGA Experimental SGN-U566224 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|76161006|gb|ABA40466.1| (e_value=4e-60) unknown [Solanum tuberosum]; (*ATH) AT1G05760.1 (e_value=6e-23) Symbol: None | jacalin lectin family protein (RTM1), identical to gi:6503088 (GB:AAF14583) from (Arabidopsis thaliana) (Proc. Natl. Acad. Sci. U.S.A. 97 (1), 489-494 (2000)); contains Pfam profile PF01419 jacalin-like lectin domain | chr1:1723733-17... ; Solyc09g083020.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:64102512-64102985 transcript_region:SL2.40ch09:64102512..64102985- go_terms:GO:0005529 functional_description:"Myrosinase-binding protein-like protein (AHRD V1 **-* Q9M5W9_ARATH); contains Interpro domain(s) IPR001229 Mannose-binding lectin " 2 4 3 19 opLeV0100000675 sgn|U212626 GAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCC Experimental SGN-U578456 Tomato 200607#2 [466 ESTs aligned] Solyc04g080280.2.1 genomic_reference:SL2.40ch04 gene_region:62108191-62110645 transcript_region:SL2.40ch04:62108191..62110645+ functional_description:"Unknown Protein (AHRD V1)" 2 2 3 19 opLeV0100000676 sgn|U214430 TTGCTGGAAATAAAGGACTTTGTGGTTCACCGTTGCCCCCTTGCAGAAAGTTTTAGTGTTATCAATGATT Experimental SGN-U594439 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157352765|emb|CAO44580.1| (e_value=4e-40) unnamed; (*ATH) AT1G33590.1 (e_value=4e-38) Symbol: None | disease resistance protein-related / LRR protein-related, contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D (Lycopersicon esculentum) gi:3894393:gb:AAC78596 | chr1:12177757-12179393 FORWARD | Al... ; Solyc10g052880.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:49565421-49566857 transcript_region:SL2.40ch10:49565421..49566857+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP" 4 8 15 20 opLeV0100000677 sgn|U217558 CAATTCATCACCACGCTCCCTCCGTAGAGCTTCACAGTTTCGAGTTGTGAAAGCTGTTGCAACTCCAAAT Experimental SGN-U576528 Tomato 200607#2 [36 ESTs aligned] (*GB) gi|157354370|emb|CAO46985.1| (e_value=1e-79) unnamed; (*ATH) AT5G49940.1 (e_value=2e-76) | Symbol: None | nitrogen fixation NifU-like family protein, similar to Nitrogen fixation protein nifU (SP:Q43885) {Anabaena azollae}; contains Pfam profile: PF01106 NifU-like domain | chr5:20332639-20334626 FORWARD | Aliases: K9P8.16; (*SWP) sp|Q93W20|NIFU2_ARATH (e_value=1e-75) NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2; Solyc01g103710.2.1 genomic_reference:SL2.40ch01 gene_region:84025720-84029325 transcript_region:SL2.40ch01:84025720..84029325+ go_terms:GO:0005198 functional_description:"Fe/S biogenesis protein nfuA (AHRD V1 *--- NFUA_BUCCC); contains Interpro domain(s) IPR001075 NIF system FeS cluster assembly, NifU, C-terminal " 4 6 15 20 opLeV0100000678 sgn|U233470 CTCAAATCCTCATAATAATCAGGTATAAATTCCTGTTTCGTTTCATCTTTGAAGGCTTCCTCTGCCTCTG Experimental SGN-U592885 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|108937128|gb|ABG23376.1| (e_value=8e-36) phytophthora-inhibited; (*ATH) AT2G27420.1 (e_value=3e-11) | Symbol: None | cysteine proteinase, putative, contains similarity to cysteine protease SPCP1 GI:13491750 from (Ipomoea batatas) | chr2:11733222-11734692 REVERSE | Aliases: F10A12.10, F10A12_10; Solyc10g007280.2.1 genomic_reference:SL2.40ch10 gene_region:1683212-1684934 transcript_region:SL2.40ch10:1683212..1684934- go_terms:GO:0016887 functional_description:"AAA-ATPase (AHRD V1 **-* C3TX92_BRASY); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core " 4 4 15 20 opLeV0100000679 sgn|U218373 GATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACC Experimental SGN-U563614 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|157337673|emb|CAO22019.1| (e_value=6e-58) unnamed; (*ATH) AT2G34860.2 (e_value=9e-53) |; Solyc01g006130.2.1 genomic_reference:SL2.40ch01 gene_region:785470-789814 transcript_region:SL2.40ch01:785470..789814+ go_terms:GO:0006457 functional_description:"Homology to unknown gene (AHRD V1 *-*- Q010T6_OSTTA); contains Interpro domain(s) IPR001305 Heat shock protein DnaJ, cysteine-rich region " 4 2 15 20 opLeV0100000680 sgn|U212598 TCGACCTTAACGCCAACCACAATTCAACAATCGAACCATCGTCGTTGTCA Experimental SGN-U580579 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|62733650|gb|AAX95766.1| (e_value=2e-50) putative DNA binding protein [Lycopersicon esculentum]; Solyc06g071230.2.1 genomic_reference:SL2.40ch06 gene_region:40203584-40206006 transcript_region:SL2.40ch06:40203584..40206006- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** A1DR86_CATRO); contains Interpro domain(s) IPR017930 Myb-type HTH DNA-binding domain " 4 8 19 20 opLeV0100000681 sgn|U219178 CTCCCGGTAGTAGCTCCAATGTAAAGTCAGAACAACCTGGATTAGCAAATTTACCTCCCTTAGGACCTGG Experimental SGN-U584071 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157327974|emb|CAO16940.1| (e_value=6e-114) unnamed; (*ATH) AT1G06070.1 (e_value=3e-102) Symbol: None | bZIP transcription factor, putative (bZIP69), similar to transcriptional activator RF2a GB:AF005492 GI:2253277 from (Oryza sativa); contains Pfam profile PF00170: bZIP transcription factor | chr1:1834828-1837647 REVERSE | Aliases: T21... ; (*SWP) sp|Q04088|POF21_ARATH (e_value=2e-88) Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21; Solyc06g053350.2.1 genomic_reference:SL2.40ch06 gene_region:32588534-32595646 transcript_region:SL2.40ch06:32588534..32595646+ go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 *-*- D7LF63_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper " 4 6 19 20 opLeV0100000682 sgn|U225682 CACGTGCTCGTTATGGAATCGTTATCCTAGGAAATCCTAAAGTGTTGAGCAAGCAGCCTCTCTGGAATGG Experimental SGN-U577375 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157342013|emb|CAO63469.1| (e_value=0) unnamed; (*ATH) AT5G47010.1 (e_value=0) | Symbol: None | RNA helicase, putative, similar to type 1 RNA helicase pNORF1 (Homo sapiens) GI:1885356 | chr5:19089236-19096561 FORWARD | Aliases: MQD22.15, MQD22_15; (*SWP) sp|Q9FJR0|RENT1_ARATH (e_value=0) Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1; Solyc08g077420.2.1 genomic_reference:SL2.40ch08 gene_region:58442784-58455874 transcript_region:SL2.40ch08:58442784..58455874+ go_terms:GO:0004004 functional_description:"ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain " 4 4 19 20 opLeV0100000683 sgn|U213784 CAGCTTTGCCTACTGCATCTGAAGCCCTCACTTTGCTCAAGGGAGGAGCATAGAAACATCGTGTTATCTT Experimental SGN-U586194 Tomato 200607#2 [86 ESTs aligned] (*GB) gi|75221385|sp|Q42896|SCRK2_SOLLC (e_value=0) Fructokinase-2; (*ATH) AT3G59480.1 (e_value=1e-153) | Symbol: None | pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase | chr3:21993998-21995572 FORWARD | Aliases: T16L24.30; (*SWP) sp|Q42896|SCRK2_SOLLC (e_value=0) Fructokinase-2 OS=Solanum lycopersicum GN=FRK2; Solyc06g073190.2.1 genomic_reference:SL2.40ch06 gene_region:41483219-41485991 transcript_region:SL2.40ch06:41483219..41485991- go_terms:GO:0008865,GO:0008959 functional_description:"Fructokinase-like (AHRD V1 **-* Q307Z3_SOLTU); contains Interpro domain(s) IPR002173 Carbohydrate/puine kinase, PfkB, conserved site " 4 2 19 20 opLeV0100000684 sgn|U214036 GGAGATGATGATACCACTTGCTTTCATTGCTGCCACCGGGTAATATCTCT Experimental SGN-U570361 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|12231296|gb|AAG49032.1|AF204785_1 (e_value=3e-21) ripening; (*ATH) AT5G65380.1 (e_value=2e-29) Symbol: None | ripening-responsive protein, putative, similar to ripening regulated protein DDTFR18 (Lycopersicon esculentum) GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family | chr5:26140215-26143665 REVERSE | Alia... ; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=4e-13) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12; \N \N 4 8 3 19 opLeV0100000685 sgn|U221820 CAAGATGGTCCATGCTCAGATGGAGATGAGAAATCTGTCGAGTCCAACCATGAGGAGAAGGGGAATTCTA Experimental SGN-U574408 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|147769001|emb|CAN66734.1| (e_value=8e-40) hypothetical; (*ATH) AT3G06670.1 (e_value=1e-24) | Symbol: None | expressed protein | chr3:2105465-2113421 REVERSE | Aliases: T8E24.10; Solyc12g099320.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64843563-64859274 transcript_region:SL2.40ch12:64843563..64859274- go_terms:GO:0005488 functional_description:"Serine/threonine-protein phosphatase 4 regulatory subunit 3 (AHRD V1 **-- PP4R3_DANRE); contains Interpro domain(s) IPR006887 Protein of unknown function DUF625 " 4 6 3 19 opLeV0100000686 sgn|U226839 TGGCCTTAAGATACTTTCAAGCCGATAACAGGAAGTATTGCTATACACTTGATGTGATTCCGCGAAACAG Experimental SGN-U583556 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157347416|emb|CAO18053.1| (e_value=1e-37) unnamed; (*ATH) AT2G37050.3 (e_value=3e-43) Symbol: None | similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:At1g67720.1); similar to putative light repressible receptor protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD870... ; Solyc12g039080.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:37670840-37672032 transcript_region:SL2.40ch12:37670840..37672032- functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM37_MARPO)" 4 4 3 19 opLeV0100000687 sgn|U227311 TGAATAATTGTCCTTTCCTCGTACGCATTTGAGTACTCAAGGCCCCCTTTCTTTTGGCGGGTATCGCCAC Experimental SGN-U575090 Tomato 200607#2 [5 ESTs aligned] \N \N 4 2 3 19 opLeV0100000688 sgn|U213327 TGATATTGTTGCCTTAGTTGCTAGAGACTCTATTGTCGTCACAGGAGGTCCTTCATGGAGTGTACCAACA Experimental SGN-U571837 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|678547|gb|AAA65637.1| (e_value=1e-130) peroxidase; (*ATH) AT1G05260.1 (e_value=6e-113) Symbol: None | peroxidase 3 (PER3) (P3) / rare cold-inducible protein (RCI3A) (PRC), identical to SP:O23044 Peroxidase 3 precursor (EC 1.11.1.7) (Atperox P3) (Rare cold inducible protein) (RCI3A) (ATPRC) {Arabidopsis thalliana} | chr1:1529767-153143... ; (*SWP) sp|O23044|PER3_ARATH (e_value=5e-112) Peroxidase 3 OS=Arabidopsis thaliana GN=PER3; Solyc05g046030.2.1 genomic_reference:SL2.40ch05 gene_region:57274702-57276304 transcript_region:SL2.40ch05:57274702..57276304+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07446_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial " 2 8 16 20 opLeV0100000689 sgn|U214513 CAGGTGAGGAAGGTCTGAAGCTATCCCCTTGGTTCAGACTTGTCGTTGACAACTTTTTGTTCAAGTGGTG Experimental SGN-U577516 Tomato 200607#2 [95 ESTs aligned] (*GB) gi|13603406|dbj|BAB40973.1| (e_value=3e-134) isopentenyl diphosphate isomerase 1 [Nicotiana tabacum]; (*ATH) AT3G02780.1 (e_value=3e-119) Symbol: None | isopentenyl-diphosphate delta-isomerase II / isopentenyl diphosphate:dimethylallyl diphosphate isomerase II (IPP2), identical to isopentenyl diphosphate:dimethylallyl diphosphate isomerase (IPP2) GB:U49259 (Arabidopsis thaliana) | chr... ; (*SWP) sp|O48965|IDI2_CAMAC (e_value=2e-124) Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2; Solyc04g056390.2.1 genomic_reference:SL2.40ch04 gene_region:53311908-53315677 transcript_region:SL2.40ch04:53311908..53315677- go_terms:GO:0004452,GO:0042802 functional_description:"Isopentenyl-diphosphate delta-isomerase (AHRD V1 **** Q84RZ8_9GENT); contains Interpro domain(s) IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 " 2 6 16 20 opLeV0100000690 sgn|U231963 CGTCCGGGCAGGTACATCTTTTTCACCCTTTTCGTTCGTTTGCTCTCTGCTCACAGCAAAGTCCAATCTG Experimental SGN-U581081 Tomato 200607#2 [156 ESTs aligned] (*GB) gi|3913651|sp|O04977|FENR1_TOBAC (e_value=0) Ferredoxin--NADP; (*ATH) AT5G66190.1 (e_value=2e-163) Symbol: None | ferredoxin--NADP(+) reductase, putative / adrenodoxin reductase, putative, strong similarity to Ferredoxin--NADP reductase, chloroplast precursor (EC 1.18.1.2) (FNR) from {Pisum sativum} SP:P10933, {Mesembryanthemum crystallinum} SP:P... ; (*SWP) sp|O04977|FENR1_TOBAC (e_value=0) Ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic OS=Nicotiana tabacum GN=PETH; Solyc02g083810.2.1 genomic_reference:SL2.40ch02 gene_region:41646719-41650004 transcript_region:SL2.40ch02:41646719..41650004- go_terms:GO:0003959 functional_description:"Ferredoxin--NADP reductase (AHRD V1 ***- D7MN04_ARALY); contains Interpro domain(s) IPR012146 Ferredoxin--NADP reductase " 2 4 16 20 opLeV0100000691 sgn|U214877 CATGCAAGAAGAACCAAAGGTGAAACTTCACCATGAGAAGGGAGGAGATG Experimental SGN-U568769 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|135171|sp|P27058|SYST_SOLLC (e_value=4e-46) RecName:; (*SWP) sp|P27058|SYST_SOLLC (e_value=2e-47) Systemin OS=Solanum lycopersicum; Solyc05g051750.2.1 genomic_reference:SL2.40ch05 gene_region:61277162-61281598 transcript_region:SL2.40ch05:61277162..61281598- functional_description:"Prosystemin (AHRD V1 ***- Q5MBK9_BETVU); contains Interpro domain(s) IPR009966 Prosystemin " 2 2 16 20 opLeV0100000692 sgn|U225022 CAAATAGAAACGAAGTGTTCTGGACATTTGCTTCATGAGCACTTCAAATCAAATCCACACAAAACATCCG Experimental SGN-U564604 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|256141|gb|AAB23378.1| (e_value=1e-61) orf [Nicotiana tabacum]; (*ATH) AT1G70840.1 (e_value=5e-20) Symbol: None | Bet v I allergen family protein, similar to Csf-2 (Cucumis sativus)(GI:5762258)(J Am Soc Hortic Sci 124, 136-139 (1999)) ; contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family | chr1:26716644-26717728 REVERSE | A... ; (*SWP) sp|Q941R6|MLP31_ARATH (e_value=4e-19) MLP-like protein 31 OS=Arabidopsis thaliana GN=MLP31; Solyc08g023660.2.1 genomic_reference:SL2.40ch08 gene_region:17737993-17739269 transcript_region:SL2.40ch08:17737993..17739269+ go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen " 2 8 20 20 opLeV0100000693 sgn|U220912 AGTAAATGATCTCAACCCAATTGTATCCTTGCTCCTAAAAACCACAAGGAACTGTGCCGCTGGGTCTCTT Experimental SGN-U567019 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|28804252|dbj|BAC58020.1| (e_value=4e-88) angustifolia [Ipomoea nil]; (*ATH) AT1G01510.1 (e_value=3e-71) Symbol: None | C-terminal binding protein (ANGUSTIFOLIA), nearly identical to C-terminal binding protein ANGUSTIFOLIA (Arabidopsis thaliana) GI:15408535; contains Pfam profile PF02826: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domai... ; Solyc01g095040.2.1 genomic_reference:SL2.40ch01 gene_region:78171634-78177463 transcript_region:SL2.40ch01:78171634..78177463- go_terms:GO:0008152,GO:0048037 functional_description:"Glyoxylate/hydroxypyruvate reductase B (AHRD V1 *--- GHRB_SERP5); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding " 2 6 20 20 opLeV0100000694 sgn|U229284 TCATTTGGTCCTCCACCAGAGGTTGGGGATTGGGGACATGTCCCACAAGTTTCTGAGCTCGGGCTTCAGC Experimental SGN-U563587 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|110825715|sp|Q38JU2|CRYD_SOLLC (e_value=0) RecName:; (*ATH) AT5G24850.1 (e_value=9e-132) Symbol: None | cryptochrome dash (CRYD), nearly identical to cryptochrome dash (Arabidopsis thaliana) GI:28971609; similar to Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme)(SP:Q55081){Synechocystis sp.} | chr5:8535285-8... ; (*SWP) sp|Q38JU2|CRYD_SOLLC (e_value=0) Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum GN=CRYD; Solyc08g074270.2.1 genomic_reference:SL2.40ch08 gene_region:55534991-55540303 transcript_region:SL2.40ch08:55534991..55540303- go_terms:GO:0003684 functional_description:"Cryptochrome 3" 2 4 20 20 opLeV0100000695 sgn|U223052 GTTACTGGAAGCACTGATACATCACTCTGGACAGTCTACAATAAAGGGGTTCGCAATTACTGCGGCAACA Experimental SGN-U564161 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|37983622|gb|AAR06292.1| (e_value=0) SAICAR synthetase [Nicotiana tabacum]; (*ATH) AT3G21110.1 (e_value=6e-139) Symbol: None | phosphoribosylamidoimidazole-succinocarboxamide synthase / SAICAR synthetase (PUR7), identical to phosphoribosylamidoimidazole-succinocarboxamide synthase, chloroplast (precursor) SP:P38025 from (Arabidopsis thaliana) | chr3:7402141-7... ; (*SWP) sp|Q07463|PUR7_VIGAC (e_value=4e-141) Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic (Fragment) OS=Vigna aconitifolia GN=PUR7; Solyc01g081300.2.1 genomic_reference:SL2.40ch01 gene_region:73045038-73052028 transcript_region:SL2.40ch01:73045038..73052028+ go_terms:GO:0004639 functional_description:"Phosphoribosylaminoimidazole-succinocarboxamide synthase (AHRD V1 **** Q6T7F0_TOBAC); contains Interpro domain(s) IPR001636 SAICAR synthetase " 2 2 20 20 opLeV0100000696 sgn|U219145 ACTTCTCCCACATACGGGGGTATTTTTGTTCCTTTGCAACTTGCTAATCAAAGCGACTAAATAGATGTAA Experimental SGN-U581771 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157337222|emb|CAO21568.1| (e_value=2e-121) unnamed; (*ATH) AT2G29410.1 (e_value=6e-101) Symbol: None | zinc transporter, putative, similar to zinc transporter ZAT (Arabidopsis thaliana) gi:4206640:gb:AAD11757; similar to zinc transporter ZnT-2 (Rattus norvegicus) gi:1256378:gb:AAB02775; member of the cation diffusion facilitator (CDF) ... ; (*SWP) sp|Q6DBM8|MTPB_ARATH (e_value=6e-100) Metal tolerance protein B OS=Arabidopsis thaliana GN=MTPB; \N \N 2 8 4 19 opLeV0100000697 sgn|U234797 TCCAAAAACTCGTTCCTGGAACAAGAGCACAGATTGTTGCTCATGGGATG Experimental SGN-U587584 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|4235641|gb|AAD13301.1| (e_value=6e-79) NL0D [Lycopersicon esculentum]; (*ATH) AT3G11080.1 (e_value=2e-28) | Symbol: None | disease resistance family protein, contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2 (Lycopersicon pimpinellifolium) gi:1184077:gb:AAC15780 | chr3:3470446-3473318 FORWARD | Aliases: F11B9.4; Solyc01g005760.2.1 genomic_reference:SL2.40ch01 gene_region:496465-499371 transcript_region:SL2.40ch01:496465..499371+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP" 2 6 4 19 opLeV0100000698 sgn|U212890 TGTCCATTGGAGATGTTGTCCGTGCTGTTGTGGGTGAGCACAGGGAAGAGCTGAAACGGTTGAATGCCTT Experimental SGN-U579506 Tomato 200607#2 [43 ESTs aligned] (*GB) gi|217073214|gb|ACJ84966.1| (e_value=2e-87) unknown; (*ATH) AT5G10860.1 (e_value=1e-83) | Symbol: None | CBS domain-containing protein, contains Pfam profile PF00571: CBS domain | chr5:3428892-3430471 REVERSE | Aliases: T30N20.130, T30N20_130; (*SWP) sp|Q9LEV3|UMP3_ARATH (e_value=1e-82) Uncharacterized protein At5g10860, mitochondrial OS=Arabidopsis thaliana GN=At5g10860; Solyc09g018750.2.1 genomic_reference:SL2.40ch09 gene_region:16842932-16844969 transcript_region:SL2.40ch09:16842932..16844969- go_terms:GO:0008152 functional_description:"Inosine-5&apos-monophosphate dehydrogenase (AHRD V1 ***- Q0KFK7_RALEH); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core " 2 4 4 19 opLeV0100000699 sgn|U222023 TTATTCCAGGTATTACTGCAGCATCTGGGATATCGGCGGAGTTGGGAATTCCATTAACCCATCGGGGTGT Experimental SGN-U572308 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|147765852|emb|CAN62430.1| (e_value=1e-149) hypothetical; (*ATH) AT5G40850.1 (e_value=2e-142) Symbol: None | urophorphyrin III methylase (UPM1), identical to urophorphyrin III methylase (GI:1146165) (Arabidopsis thaliana); similar to s-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase (GI:1490606) (Arabidopsis thaliana);... ; (*SWP) sp|Q02NA3|CYSG_PSEAB (e_value=7e-63) Siroheme synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=cysG; Solyc01g086650.2.1 genomic_reference:SL2.40ch01 gene_region:73383501-73387568 transcript_region:SL2.40ch01:73383501..73387568- go_terms:GO:0008152,GO:0006779,GO:0055114 functional_description:"Siroheme synthase (AHRD V1 ***- A3LD64_PSEAE); contains Interpro domain(s) IPR006366 Uroporphyrin-III C-methyltransferase, C-terminal " 2 2 4 19 opLeV0100000700 sgn|U223092 AAAAAAGCATGCGAGGATGCCACTCCAATTATCAACGGGCGCCGAGCCAACTGTAATCTCGCGTCCCTCG Experimental SGN-U565002 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|118481097|gb|ABK92502.1| (e_value=4e-90) unknown; (*ATH) AT3G54770.1 (e_value=1e-55) Symbol: None | RNA recognition motif (RRM)-containing protein, low similarity to RRM-containing protein SEB-4 (Xenopus laevis) GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) | chr3:20284700-2028... ; (*SWP) sp|Q6GQD3|RB24A_XENLA (e_value=9e-23) RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-A; Solyc04g049920.2.1 genomic_reference:SL2.40ch04 gene_region:43945972-43948617 transcript_region:SL2.40ch04:43945972..43948617+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA binding protein-like (AHRD V1 **-- Q8LFQ5_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 " 4 6 16 20 opLeV0100000701 sgn|U216159 TCCTATATCAACAAGAAAAGGAGAAACATATTGGCATGTCGTTTACCTAACAACAAGAACCACACTGGCA Experimental SGN-U566116 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|147857682|emb|CAN82883.1| (e_value=2e-23) hypothetical; (*ATH) AT3G43850.1 (e_value=7e-18) | Symbol: None | expressed protein, similar to MTD1 (Medicago truncatula) GI:9294810 | chr3:15713072-15715139 REVERSE | Aliases: T28A8.140; Solyc08g061490.2.1 genomic_reference:SL2.40ch08 gene_region:46025993-46027176 transcript_region:SL2.40ch08:46025993..46027176+ functional_description:"MTD1 (AHRD V1 ***- Q9LLM3_MEDTR)" 4 4 16 20 opLeV0100000702 sgn|U216400 CAACTTGGTCTCAATTGGCAACTAAACACTCCAACTTGTCCCCACTGTCTCATGGACACCCTACCTTGAC Experimental SGN-U580649 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|124484399|dbj|BAF46310.1| (e_value=3e-93) SEC14; (*ATH) AT1G14820.3 (e_value=3e-90) Symbol: None | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein, contains Pfam PF00650 : CRAL/TRIO domain; similar to phosphatidylinositol/phosphatidylcholine transfer protein SP:P24280 (Saccharomyces cerevisiae (Bake... ; (*SWP) sp|P24280|SEC14_YEAST (e_value=8e-13) SEC14 cytosolic factor OS=Saccharomyces cerevisiae GN=SEC14; Solyc01g005260.2.1 genomic_reference:SL2.40ch01 gene_region:195721-199105 transcript_region:SL2.40ch01:195721..199105+ go_terms:GO:0005215 functional_description:"SEC14 cytosolic factor family protein (AHRD V1 **-- D7M8H6_ARALY); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal " 4 2 16 20 opLeV0100000703 sgn|U220884 CTGTTGGGCGTCCCTGGATTGACAGCTTTCTATAGATCTTGAGACGGTGATTGAACGGAAACCAAGAGTA Experimental SGN-U563241 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157341854|emb|CAO63310.1| (e_value=2e-15) unnamed; (*ATH) AT1G31930.2 (e_value=5e-14) Symbol: None | extra-large guanine nucleotide binding protein, putative / G-protein, putative, similar to extra-large G-protein (XLG) (Arabidopsis thaliana) GI:3201680; contains Pfam profile PF00503: G-protein alpha subunit | chr1:11464994-11469145 ... ; \N \N 4 8 20 20 opLeV0100000704 sgn|U238961 GGGGGTAAAGAACCCGGGGGGCACCCCCATAACCCCAATTCCCTTTTTTGGCCCTTTCCAACCCAAAATT Experimental SGN-U602902 Tomato 200607#2 [1 ESTs aligned] \N \N 4 6 20 20 opLeV0100000705 sgn|U225287 CCTCTCCATCAATTGAGTTGTAGGTTGAAGGTGAAGAAGCCAATGGAAGTACCTTTACACAAGTAGTAGA Experimental SGN-U574248 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|157337338|emb|CAO21684.1| (e_value=5e-46) unnamed; (*ATH) AT5G59350.1 (e_value=3e-24) |; Solyc11g066080.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:48838045-48838875 transcript_region:SL2.40ch11:48838045..48838875- functional_description:"Genomic DNA chromosome 5 BAC clone F2O15 (AHRD V1 ***- Q9LTJ3_ARATH)" 4 4 20 20 opLeV0100000706 sgn|U219911 TTGTGCCAACAGTGGATGGCTCTCAAGTACCATTACCTGTATGCATCTGTTGCAAATGGTCATGCAGGGC Experimental SGN-U562830 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157342329|emb|CAO64442.1| (e_value=2e-176) unnamed; (*ATH) AT5G61140.1 (e_value=1e-162) | Symbol: None | Encodes a predicted protein with 30% identity with MER3/RCK. | chr5:24607225-24620740 FORWARD | Aliases: MAF19.14, MAF19_14; (*SWP) sp|O75643|U520_HUMAN (e_value=1e-75) U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=ASCC3L1; Solyc06g069480.2.1 genomic_reference:SL2.40ch06 gene_region:39617598-39646906 transcript_region:SL2.40ch06:39617598..39646906+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain " 4 2 20 20 opLeV0100000707 sgn|U223321 AAATTATGCTGTGGTGGCTACGGGTTGAAGCACGAGCAGACAGCAAATTCCCTGCCAGATGGATCATTGA Experimental SGN-U583344 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|63087746|emb|CAI93188.1| (e_value=0) glycosyltransferase; (*ATH) AT5G67230.1 (e_value=1e-146) Symbol: None | glycosyl transferase family 43 protein, low similarity to Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1, Homo sapiens (SP:Q9P2W7), Rattus norvegicus (SP:O35789); contains Pfam domain Glycosyltransferase family 43... ; (*SWP) sp|Q9P2W7|B3GA1_HUMAN (e_value=2e-13) Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 OS=Homo sapiens GN=B3GAT1; Solyc11g011850.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4801869-4806446 transcript_region:SL2.40ch11:4801869..4806446- go_terms:GO:0016020 functional_description:"Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 (AHRD V1 *--- B6U0V3_MAIZE); contains Interpro domain(s) IPR005027 Glycosyl transferase, family 43 " 4 8 4 19 opLeV0100000708 sgn|U220345 TAATGGTGTTGATGAATTGCATCATTCCATGACTGGTCCCAGGAGTAAAGTTCACTGCGGCCGAGAAGTT Experimental SGN-U568480 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|147808145|emb|CAN75263.1| (e_value=1e-51) hypothetical; (*ATH) AT5G54730.1 (e_value=1e-14) | Symbol: None | expressed protein | chr5:22251015-22254030 REVERSE | Aliases: K5F14.9, K5F14_9; Solyc07g064060.2.1 genomic_reference:SL2.40ch07 gene_region:63571448-63578879 transcript_region:SL2.40ch07:63571448..63578879- functional_description:"Breast carcinoma amplified sequence 3 (Fragment) (AHRD V1 *--- B1AR77_MOUSE); contains Interpro domain(s) IPR011046 WD40 repeat-like " 4 6 4 19 opLeV0100000709 sgn|U222387 AATTCCATTACACAACTAGCTTTGACCCGAAGTTTGAGTCATCGTCTACACAAGGACTGACCGCTAACAG Experimental SGN-U578507 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|108710112|gb|ABF97907.1| (e_value=2e-57) expressed; (*ATH) AT3G11760.1 (e_value=2e-50) | Symbol: None | expressed protein | chr3:3718535-3721129 FORWARD | Aliases: F26K24.5; Solyc04g009790.2.1 genomic_reference:SL2.40ch04 gene_region:3090794-3100196 transcript_region:SL2.40ch04:3090794..3100196- go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_ENT38); contains Interpro domain(s) IPR015521 MATE family transporter related protein " 4 4 4 19 opLeV0100000710 sgn|U231605 ATGGAGATTGCTTATGTTGTAAAATGTGGGGGCAGCAGGATAGTAGCTACCGGTACAATTCCAGACCCTG Experimental SGN-U570606 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|23507177|gb|AAN38002.1| (e_value=3e-51) LEA1-like protein [Capsicum annuum]; (*ATH) AT1G01470.1 (e_value=2e-35) Symbol: None | late embryogenesis abundant protein, putative / LEA protein, putative, similar to SP:P46518 Late embryogenesis abundant protein Lea14-A {Gossypium hirsutum}; contains Pfam profile PF03168: Late embryogenesis abundant protein | chr1:17... ; (*SWP) sp|P46519|LEA14_SOYBN (e_value=2e-43) Desiccation protectant protein Lea14 homolog OS=Glycine max; Solyc10g011900.2.1 genomic_reference:SL2.40ch10 gene_region:4183524-4185077 transcript_region:SL2.40ch10:4183524..4185077- go_terms:GO:0009269 functional_description:"Late embryogenesis abundant protein (AHRD V1 **-- B5TV69_CAMSI); contains Interpro domain(s) IPR013990 Water Stress and Hypersensitive response " 1 4 5 19 opLeV0100000711 sgn|U239687 GGCCAAAATCACCTTCTCATCCTCAAAGCCCCCAAAGAAAACTAAAGAAAAGCGGTTCACCGGCTTCTTC Experimental SGN-U601717 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147834194|emb|CAN75307.1| (e_value=2e-33) hypothetical; (*ATH) AT4G23340.1 (e_value=3e-29) Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to gibberellin c20-oxidase (Pisum sativum) GI:6855711; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family | chr4:12195463-12196705 REVERSE | Aliases:... ; Solyc01g094590.2.1 genomic_reference:SL2.40ch01 gene_region:77781063-77782721 transcript_region:SL2.40ch01:77781063..77782721- go_terms:GO:0045544,GO:0010302 functional_description:"Gibberellin 20-oxidase-like protein (AHRD V1 **-* Q9FGV8_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase " 1 8 9 19 opLeV0100000712 U32444 GGTTCAGGTCACATGGGACTCGCCTGTCGAAGTATCACAGTTGTACCTGATTGGTGACAATTTGAGGCTT Experimental \N \N Solyc07g045480.2.1 genomic_reference:SL2.40ch07 gene_region:55934576-55945063 transcript_region:SL2.40ch07:55934576..55945063+ go_terms:GO:0005515,GO:0004673 functional_description:"Phytochrome F" 1 4 9 19 opLeV0100000713 sgn|U217122 AAAAATCTTGCTGCAGATGATTATCCGCCCAATGGGAATCCTGCATCTTTATCTGGGAAGAAGATTCTTG Experimental SGN-U569627 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|3024505|sp|Q40522|RB11D_TOBAC (e_value=2e-113) Ras-related protein Rab11D; (*ATH) AT5G65270.1 (e_value=5e-104) | Symbol: None | Ras-related GTP-binding family protein, similar to GTP-binding protein RAB11A GI:1370142 from (Lotus japonicus); contains Pfam profile: PF00071 Ras family | chr5:26100602-26101940 FORWARD | Aliases: MQN23.22, MQN23_22; (*SWP) sp|Q40522|RB11D_TOBAC (e_value=2e-114) Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D; Solyc04g012180.2.1 genomic_reference:SL2.40ch04 gene_region:4461532-4467418 transcript_region:SL2.40ch04:4461532..4467418- go_terms:GO:0005525 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_RABIT); contains Interpro domain(s) IPR015595 Rab11-related " 1 8 13 19 opLeV0100000714 sgn|U214548 TTGTAATAACTCCTGGGGGTATGATCAGGGATTCAGCAGAGCACGTTGGCATAAGAAGTGAGGATGAAGG Experimental SGN-U581673 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|730291|sp|P40972|PEL_TOBAC (e_value=2e-145) Pectate lyase precursor; (*ATH) AT3G01270.1 (e_value=1e-111) | Symbol: None | pectate lyase family protein, similar to pectate lyase P59 SP:P15722 from (Lycopersicon esculentum) | chr3:82695-84904 REVERSE | Aliases: T22N4.10, T22N4_10, T4P13.4, T4P13_4; (*SWP) sp|P40972|PEL_TOBAC (e_value=1e-146) Pectate lyase OS=Nicotiana tabacum; Solyc02g067450.2.1 genomic_reference:SL2.40ch02 gene_region:32221607-32227249 transcript_region:SL2.40ch02:32221607..32227249- go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7M6R5_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen " 1 4 13 19 opLeV0100000715 sgn|U216599 GTTAAAGGCAGAGGAAAGGCCAACTCAAAGGATGTTGTTACTAACGGGCCTCCTGCTCCAAATCAAACTG Experimental SGN-U562815 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|157344442|emb|CAO69825.1| (e_value=2e-159) unnamed; (*ATH) AT1G28520.2 (e_value=1e-153) |; Solyc02g077450.2.1 genomic_reference:SL2.40ch02 gene_region:36962132-36966974 transcript_region:SL2.40ch02:36962132..36966974- go_terms:GO:0016563 functional_description:"One zinc finger protein (AHRD V1 **-- Q75PR0_PHYPA)" 3 8 5 19 opLeV0100000716 sgn|U215857 ACATCAAGTCGCTTTAAGCTAGCCTCGCATGCTGCCCTTACATAGGCTGGCTCTCCGCGCACTTGCATTT Experimental SGN-U571240 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|728744|sp|P40691|A115_TOBAC (e_value=2e-124) AUXIN-INDUCED PROTEIN PCNT115; (*ATH) AT1G60710.1 (e_value=4e-116) | Symbol: None | aldo/keto reductase family protein, contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family | chr1:22358418-22360407 REVERSE | Aliases: F8A5.23, F8A5_23; (*SWP) sp|P40691|A115_TOBAC (e_value=1e-125) Auxin-induced protein PCNT115 OS=Nicotiana tabacum; Solyc09g097970.2.1 genomic_reference:SL2.40ch09 gene_region:67192761-67196455 transcript_region:SL2.40ch09:67192761..67196455+ go_terms:GO:0055114 functional_description:"Aldo/keto reductase family protein (AHRD V1 ***- D7KWQ9_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase " 3 8 13 19 opLeV0100000717 sgn|U214682 CTCAAAGAAACAACGAGTGGGCAACGTGGCACTTCCACATCAGATATTGGAATCAAGCGTGAGCCCACCA Experimental SGN-U576104 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|77403669|dbj|BAE46413.1| (e_value=1e-104) MYB-CC type transfactor [Solanum tuberosum]; (*ATH) AT2G01060.1 (e_value=4e-75) | Symbol: None | myb family transcription factor, contains Pfam profile: PF00249 myb-like DNA-binding domain | chr2:73258-75386 REVERSE | Aliases: F23H14.3, F23H14_3; (*SWP) sp|Q700D9|MYBF_ARATH (e_value=9e-13) Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600; Solyc11g067280.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50098222-50101730 transcript_region:SL2.40ch11:50098222..50101730- go_terms:GO:0045449 functional_description:"MYB-CC type transfactor (AHRD V1 **-- Q3LHL3_SOLTU); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class " 3 4 13 19 opLeV0100000718 sgn|U212902 GCATTGGTGTCAAGGACTTTAGAGACCCGACTACTGCTTGGACCGGACCACAAAATGGGCAATGGCTGTT Experimental SGN-U578305 Tomato 200607#2 [440 ESTs aligned] (*GB) gi|18542113|gb|AAL75449.1|AF465612_1 (e_value=0) minor; (*ATH) AT1G62660.1 (e_value=0) Symbol: None | beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar, identical to beta-fructosidase GB:CAA67560 GI:1429209 (Arabidopsis thaliana); supported by full-length cDNA GI:14517549; identical to cDNA Beta-fructosidase ... ; (*SWP) sp|P29000|INVA_SOLLC (e_value=0) Acid beta-fructofuranosidase OS=Solanum lycopersicum GN=TIV1; Solyc03g083910.2.1 genomic_reference:SL2.40ch03 gene_region:47397595-47401871 transcript_region:SL2.40ch03:47397595..47401871- go_terms:GO:0004553 functional_description:"Acid beta-fructofuranosidase (AHRD V1 **-- Q575T1_WHEAT); contains Interpro domain(s) IPR001362 Glycoside hydrolase, family 32 " 1 8 7 19 opLeV0100000719 sgn|U242264 TGTAGATAGTCACTCTTTGTTGACTGAGGAAAGAGGCGGGGAAGGTAGTGGGAGTGGTTCATATGTCATC Experimental SGN-U576945 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157336068|emb|CAO61898.1| (e_value=7e-83) unnamed; (*ATH) AT1G21700.1 (e_value=2e-76) Symbol: None | SWIRM domain-containing protein / DNA-binding family protein, contains similarity to SWI/SNF complex 170 KDa subunit (Homo sapiens) gi:1549241:gb:AAC50694; contains Pfam domain PF04433: SWIRM domain, PF00249: Myb-like DNA-binding doma... ; (*SWP) sp|Q9XI07|SWI3C_ARATH (e_value=2e-75) SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C; Solyc06g060120.2.1 genomic_reference:SL2.40ch06 gene_region:34441472-34459907 transcript_region:SL2.40ch06:34441472..34459907- go_terms:GO:0005515 functional_description:"SWI/SNF complex subunit SMARCC1 (AHRD V1 *--- SMRC1_MOUSE); contains Interpro domain(s) IPR007526 SWIRM " 1 4 7 19 opLeV0100000720 sgn|U220995 TTGGTTTACAGGGCGTCGCCTCAGTAACGACTCTATCCCCACGCGCCGAACCGTAGGCACCCACACTACT Experimental SGN-U564496 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|194552824|ref|YP_002087851.1| (e_value=7e-48) NAD; \N \N 1 8 11 19 opLeV0100000721 sgn|U232136 ATACAAACAATGCCTCAGGCACCCCAATGGCATAAAATACCTGCACAATGCATCTACAACCAAGTCCACT Experimental SGN-U593578 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|1170936|sp|P43280|METK1_SOLLC (e_value=6e-50) S-adenosylmethionine; (*ATH) AT4G01850.2 (e_value=1e-46) |; (*SWP) sp|P43280|METK1_SOLLC (e_value=4e-51) S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1; \N \N 1 4 11 19 opLeV0100000722 sgn|U213256 AGGTTCCGGAGTTGGATTTGGATGGGAGGACTGGGACGGTGAAACAGTATGTGGCTGTTCATAAAGGGAA Experimental SGN-U578705 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|14275856|emb|CAC39619.1| (e_value=1e-72) subunit A of ferredoxin-thioredoxin-reductase [Solanum tuberosum]; (*ATH) AT5G23440.1 (e_value=2e-24) Symbol: None | ferredoxin-thioredoxin reductase, putative, similar to ferredoxin-thioredoxin reductase, variable chain (FTR-V, Ferredoxin- thioredoxin reductase subunit A, FTR-A) (Zea mays) SWISS-PROT:P80680 | chr5:7903048-7903826 REVERSE | Aliases:... ; (*SWP) sp|P80680|FTRV_MAIZE (e_value=4e-22) Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays; Solyc01g087520.2.1 genomic_reference:SL2.40ch01 gene_region:74221192-74222066 transcript_region:SL2.40ch01:74221192..74222066+ go_terms:GO:0009536 functional_description:"Ferredoxin-thioredoxin reductase variable chain (AHRD V1 *-*- B6UCW8_MAIZE); contains Interpro domain(s) IPR004207 Ferredoxin thioredoxin reductase, alpha chain " 1 8 15 19 opLeV0100000723 sgn|U224758 TCATGGTCATCTTCATCATGATACTATGACAGCTTCGACTTCTCCAACCAGACATCCAGTTGCTGCCCAC Experimental SGN-U583182 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157336827|emb|CAO71512.1| (e_value=1e-96) unnamed; (*ATH) AT1G04140.1 (e_value=6e-51) Symbol: None | transducin family protein / WD-40 repeat family protein, contains 4 WD-40 repeats (PF00400); similar to neural cell adhesion molecule 2, large isoform precursor gb:M76710 from Xenopus laevis, and beta transducin from S. cerevisiae gb:... ; Solyc05g053130.2.1 genomic_reference:SL2.40ch05 gene_region:62380994-62396966 transcript_region:SL2.40ch05:62380994..62396966+ go_terms:GO:0000166 functional_description:"WD-40 repeat protein (AHRD V1 *--- B7K7B4_CYAP7); contains Interpro domain(s) IPR017986 WD40 repeat, region " 1 4 15 19 opLeV0100000724 sgn|U242749 CACAAGAGGGAGTTCTGCCATATCCTGGCCAAAAATCCGGAGGATCCCTGCTGATATTACTGTTGAGTTT Experimental SGN-U597167 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157356770|emb|CAO62972.1| (e_value=4e-73) unnamed; (*ATH) AT2G36720.1 (e_value=1e-63) | Symbol: None | PHD finger transcription factor, putative | chr2:15400150-15406497 FORWARD | Aliases: F13K3.12, F13K3_12; Solyc10g083800.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62877321-62887944 transcript_region:SL2.40ch10:62877321..62887944+ go_terms:GO:0008270 functional_description:"Chromodomain helicase DNA binding protein 3 (Fragment) (AHRD V1 *--- B1AR16_MOUSE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger " 3 8 7 19 opLeV0100000725 sgn|U213267 TTTGTGTTGACTATCTGCTTGATCTTTGAAATGACTTGGGCCAAGAAATTTGCCCATGTTGCCCGGAAAA Experimental \N \N \N \N 3 4 7 19 opLeV0100000726 sgn|U225603 TAGAGTCTTACTAGCAGTCTTATTTGACACCTTCATATAATCAAGCCTCTACTGGCGAACAAGCTGAGCA Experimental SGN-U574581 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205140|gb|AAT40498.2| (e_value=2e-16) hypothetical; \N \N 3 8 11 19 opLeV0100000727 sgn|U215753 AGTTTCTGAATATCCTGGTGAAGTGTCGATACTTGCACTGGGACCATTGACAAACTTGGCGTTGGCTGTC Experimental SGN-U588410 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157346250|emb|CAO15947.1| (e_value=9e-66) unnamed; (*ATH) AT2G36310.1 (e_value=7e-63) Symbol: None | inosine-uridine preferring nucleoside hydrolase family protein, similar to Chain A, Crystal Structure Of Nucleoside Hydrolase From Leishmania MajorGI:8569431; contains Pfam profile PF01156: Inosine-uridine preferring nucleoside hydrol... ; (*SWP) sp|A0L0Y0|RIHA_SHESA (e_value=7e-21) Pyrimidine-specific ribonucleoside hydrolase rihA OS=Shewanella sp. (strain ANA-3) GN=rihA; Solyc09g009690.2.1 genomic_reference:SL2.40ch09 gene_region:3081754-3086462 transcript_region:SL2.40ch09:3081754..3086462+ functional_description:"Ribonucleoside hydrolase 1 (AHRD V1 ***- D1RWC6_SEROD); contains Interpro domain(s) IPR001910 Inosine/uridine-preferring nucleoside hydrolase " 3 4 11 19 opLeV0100000728 sgn|U213531 TCTCTTTCGTCTCACTCTTTTTTCGCAGCTTCACAGCTCCTTCAGATCAGTAAAAATGCCGTTCAAGAGG Experimental SGN-U580607 Tomato 200607#2 [42 ESTs aligned] (*GB) gi|76161008|gb|ABA40467.1| (e_value=7e-67) glycoprotein-like protein [Solanum tuberosum]; (*ATH) AT2G20450.1 (e_value=2e-60) | Symbol: None | 60S ribosomal protein L14 (RPL14A) | chr2:8820947-8822332 FORWARD | Aliases: T13C7.4, T13C7_4; (*SWP) sp|Q9SIM4|RL141_ARATH (e_value=2e-59) 60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A; \N \N 3 8 15 19 opLeV0100000729 sgn|U221386 TCCCGAAGTAAACGCTGTGCCACAAGAGACGGAGATGGGGCACGAGGCATGCGCCATTGATAGGGGCCCA Experimental SGN-U573432 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|147818808|emb|CAN71799.1| (e_value=1e-129) hypothetical; (*ATH) AT4G11740.1 (e_value=8e-120) Symbol: None | ara4-interacting protein, putative (SAY1), similar to Ara4-interacting protein (Arabidopsis thaliana) GI:13160609; contains Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin interaction motif | chr4:7071854-7075495 FORWARD | Alias... ; Solyc08g080410.2.1 genomic_reference:SL2.40ch08 gene_region:60862050-60868830 transcript_region:SL2.40ch08:60862050..60868830- functional_description:"UBX domain-containing protein (AHRD V1 ***- D7MDX6_ARALY); contains Interpro domain(s) IPR001012 UBX " 3 4 15 19 opLeV0100000730 sgn|U214761 CAGAGGCTACAAGGCTTGAGGAAGTGCTGGTGTTTGAATGCACATTGATA Experimental SGN-U578394 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147839223|emb|CAN65685.1| (e_value=4e-73) hypothetical; (*ATH) AT3G05590.1 (e_value=3e-72) | Symbol: None | 60S ribosomal protein L18 (RPL18B), similar to GB:P42791 | chr3:1621486-1623020 FORWARD | Aliases: F18C1.14, F18C1_14; (*SWP) sp|P42791|RL182_ARATH (e_value=3e-71) 60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B; Solyc09g075290.2.1 genomic_reference:SL2.40ch09 gene_region:62517630-62519911 transcript_region:SL2.40ch09:62517630..62519911+ go_terms:GO:0003735,GO:0003723 functional_description:"Ribosomal protein L18 (AHRD V1 ***- C5X0Q5_SORBI); contains Interpro domain(s) IPR000039 Ribosomal protein L18e " 1 7 5 19 opLeV0100000731 sgn|U219171 GTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGC Experimental SGN-U583184 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157336827|emb|CAO71512.1| (e_value=6e-124) unnamed; (*ATH) AT1G04140.1 (e_value=3e-83) Symbol: None | transducin family protein / WD-40 repeat family protein, contains 4 WD-40 repeats (PF00400); similar to neural cell adhesion molecule 2, large isoform precursor gb:M76710 from Xenopus laevis, and beta transducin from S. cerevisiae gb:... ; Solyc09g091020.2.1 genomic_reference:SL2.40ch09 gene_region:65716313-65723844 transcript_region:SL2.40ch09:65716313..65723844- go_terms:GO:0000166 functional_description:"WD-repeat protein (AHRD V1 *--- Q7ND80_GLOVI); contains Interpro domain(s) IPR017986 WD40 repeat, region " 1 3 5 19 opLeV0100000732 sgn|U216405 CGCGGTAAAATACAAGAAGGCGGTAGAGGCCTTGCCCTATCGCTTGATAAACTTTCTGGCTCTGGCTTTC Experimental SGN-U593086 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|42795468|gb|AAS46244.1| (e_value=6e-89) xyloglucan endotransglucosylase-hydrolase XTH9 [Lycopersicon esculentum]; (*ATH) AT3G23730.1 (e_value=5e-62) Symbol: None | xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative, similar to xyloglucan endotransglycosylase-related protein GI:1244760 from (Arabidopsis thaliana) | chr... ; (*SWP) sp|P35694|BRU1_SOYBN (e_value=1e-62) Brassinosteroid-regulated protein BRU1 OS=Glycine max; Solyc12g011030.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3892612-3893717 transcript_region:SL2.40ch12:3892612..3893717+ go_terms:GO:0005975,GO:0048046 functional_description:"Xyloglucan endotransglucosylase/hydrolase 7 (AHRD V1 ***- C0IRG6_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase " 1 7 9 19 opLeV0100000733 sgn|U215102 AGAGGATTTTATTCGATTGGAGACTCTAGGGCAGTGCTAGGACGCAGAGG Experimental SGN-U579125 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157357410|emb|CAO63944.1| (e_value=4e-87) unnamed; (*ATH) AT4G33920.1 (e_value=2e-77) Symbol: None | protein phosphatase 2C family protein / PP2C family protein, similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI:15020818) (Arabidopsis thaliana); similar to protein phosphatase 2C (GI:3608412) (Mesembryanthemum crystallinum); conta... ; (*SWP) sp|Q9LUS8|P2CH1_ARATH (e_value=2e-12) Probable protein phosphatase 2C homolog 1 OS=Arabidopsis thaliana GN=At3g16560; \N \N 1 3 9 19 opLeV0100000734 sgn|U215309 GAGCTTAAGGAATGGAAGAAAATGGACATGTTACCGGCATCGCCTACTGCCAGCCAAGTATCCTGTGATA Experimental SGN-U586875 Tomato 200607#2 [1 ESTs aligned] Solyc01g095340.2.1 genomic_reference:SL2.40ch01 gene_region:78393629-78394618 transcript_region:SL2.40ch01:78393629..78394618+ functional_description:"Unknown Protein (AHRD V1)" 1 7 13 19 opLeV0100000735 sgn|U220428 GTCCGATGAGTCCTTGTGTGGAAAGAGCAGTTCTTGACCAGCTAAGTGACTATTTTAAGGCAAGACTGGC Experimental SGN-U576415 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|157345305|emb|CAO14603.1| (e_value=0) unnamed; (*ATH) AT5G14260.3 (e_value=0) Symbol: None | SET domain-containing protein, low similarity to ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I (Spinacia oleracea) GI:3403236; contains Pfam profile PF00856: SET domain | chr5:4600999-4604450 FORW... ; (*SWP) sp|Q86TU7|SETD3_HUMAN (e_value=6e-19) SET domain-containing protein 3 OS=Homo sapiens GN=SETD3; \N \N 1 3 13 19 opLeV0100000736 sgn|U219587 GTAAATCTGGATCTCCCGATTACCGACCCGCAAGCGGAATCGTTCAGATCGTGTGGAAATGATGTTGTGG Experimental SGN-U582389 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|15225009|ref|NP_181435.1| (e_value=5e-83) GCN5-related N-acetyltransferase (GNAT) family [Arabidopsis thaliana]; (*ATH) AT2G39020.1 (e_value=4e-85) Symbol: None | GCN5-related N-acetyltransferase (GNAT) family protein, similar to SP:Q9SMB8 Tyramine N-feruloyltransferase 4/11 (EC 2.3.1.110) (Hydroxycinnamoyl- CoA: tyramine N-hydroxycinnamoyltransferase) {Nicotiana tabacum}; contains Pfam profile... ; (*SWP) sp|Q9SMB8|THT11_TOBAC (e_value=2e-40) Tyramine N-feruloyltransferase 4/11 OS=Nicotiana tabacum GN=THT4; Solyc10g084640.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63407161-63407859 transcript_region:SL2.40ch10:63407161..63407859+ go_terms:GO:0008152 functional_description:"N-acetyltransferase (AHRD V1 ***- B6SUK9_MAIZE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase " 3 7 5 19 opLeV0100000737 sgn|U218089 AATGCTCAAACGAGACAGCCATGGATTCAACATCACCATACCAGCCAGGAATTCTTTCGTTGAGGTCCTC Experimental SGN-U582065 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|157337160|emb|CAO21506.1| (e_value=0) unnamed; (*ATH) AT3G47000.1 (e_value=0) | Symbol: None | glycosyl hydrolase family 3 protein, beta-D-glucan exohydrolase, Nicotiana tabacum, TREMBL:AB017502_1 | chr3:17324631-17327547 REVERSE | Aliases: F13I12.50; (*SWP) sp|Q56078|BGLX_SALTY (e_value=1e-65) Periplasmic beta-glucosidase OS=Salmonella typhimurium GN=bglX; Solyc06g076780.2.1 genomic_reference:SL2.40ch06 gene_region:44079224-44083374 transcript_region:SL2.40ch06:44079224..44083374- go_terms:GO:0005515 functional_description:"Beta-D-glucosidase (AHRD V1 ***- Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal " 3 3 5 19 opLeV0100000738 sgn|U220093 CCAGCAGAGCAAAGGGCTGTCTGGGTCATATTTATTTCTTGTTGGTGGGGTGCTGGGTTGAGATTGATTT Experimental SGN-U567553 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|9758258|dbj|BAB08757.1| (e_value=5e-45) unnamed protein product [Arabidopsis thaliana]; (*ATH) AT5G54780.1 (e_value=4e-47) Symbol: None | similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:At4g27100.1); similar to putative GTPase activating protein [Oryza sativa (japonica cultivar-group)] (GB:XP_468334.1); contains InterPro domain RabGAP/TBC do... ; Solyc10g006440.2.1 genomic_reference:SL2.40ch10 gene_region:1046336-1054965 transcript_region:SL2.40ch10:1046336..1054965+ go_terms:GO:0005622 functional_description:"TBC1 domain family member 17 (AHRD V1 *--- Q0V9K4_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBC " 3 7 9 19 opLeV0100000739 sgn|U220688 TCTTCTTACAACTCATAACCGCCACTATTGCTACCACGTCGCCACCGTATAACGCCACAGTCTTCGTCTT Experimental SGN-U566101 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157341279|emb|CAO49186.1| (e_value=5e-51) unnamed; (*ATH) AT3G51550.1 (e_value=6e-48) | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr3:19128563-19131840 REVERSE | Aliases: F26O13.190; (*SWP) sp|Q9LX66|Y3290_ARATH (e_value=4e-19) Probable receptor-like protein kinase At3g46290 OS=Arabidopsis thaliana GN=At3g46290; Solyc02g089090.2.1 genomic_reference:SL2.40ch02 gene_region:45568082-45571263 transcript_region:SL2.40ch02:45568082..45571263+ go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein" 3 3 9 19 opLeV0100000740 sgn|U225815 CGGAGAAGCTGAGAGATTTGAGTCAGCCCATTGATGTTTCGTTGCTTGACGCTACTGTTGCTGCTTTCTA Experimental SGN-U571947 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|147799770|emb|CAN61845.1| (e_value=5e-102) hypothetical; (*ATH) AT5G17020.1 (e_value=7e-99) | Symbol: None | exportin1 (XPO1), nearly identical to Exportin1 (XPO1) protein (Arabidopsis thaliana) GI:7671510 | chr5:5594739-5602958 FORWARD | Aliases: F2K13.170, F2K13_170; (*SWP) sp|Q6P5F9|XPO1_MOUSE (e_value=1e-51) Exportin-1 OS=Mus musculus GN=Xpo1; Solyc03g096920.2.1 genomic_reference:SL2.40ch03 gene_region:52731408-52746719 transcript_region:SL2.40ch03:52731408..52746719- go_terms:GO:0005049 functional_description:"Exportin-1 (AHRD V1 ***- D1MAF2_SOLLC); contains Interpro domain(s) IPR014877 Exportin 1, C-terminal " 3 7 13 19 opLeV0100000741 sgn|U221094 CCTGCTACCGTAATAACTCCAAACAGTGGGTTTCTCTCTGGTGTTGATGAATTTGACTTGGATCATGCCG Experimental SGN-U584725 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157352127|emb|CAO43134.1| (e_value=9e-90) unnamed; (*ATH) AT5G64300.1 (e_value=1e-84) Symbol: None | similar to riboflavin biosynthesis protein, putative [Arabidopsis thaliana] (TAIR:At2g22450.1); similar to GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone-4-phosphate synthase [Lycopersicon esculentum] (GB:CAA05308.1); similar to put... ; (*SWP) sp|P47924|RIBBA_ARATH (e_value=1e-83) Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA; Solyc11g010300.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3380696-3387891 transcript_region:SL2.40ch11:3380696..3387891+ go_terms:GO:0009231 functional_description:"3 4-dihydroxy-2-butanone 4-phosphate synthase (AHRD V1 ***- D1VQB4_9ACTO); contains Interpro domain(s) IPR000422 DHBP synthase RibB " 3 3 13 19 opLeV0100000742 sgn|U227525 TGTATGTAAGTCTGCAGTTGTAAGATACAGGAAGACACTAATTTTTTACCGCGGAAGAACTCCTCTAAGG Experimental SGN-U584359 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|21105751|gb|AAM34774.1|AF509874_1 (e_value=3e-66) nam-like; (*ATH) AT4G17980.1 (e_value=7e-57) | Symbol: ANAC071 | no apical meristem (NAM) family protein, NAM (GI:6066595) (Petunia x hybrida) | chr4:9978862-9980050 REVERSE | Aliases: T6K21.160, T6K21_160, ANAC071; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=4e-40) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC2; Solyc06g061080.2.1 genomic_reference:SL2.40ch06 gene_region:35499147-35501008 transcript_region:SL2.40ch06:35499147..35501008+ go_terms:GO:0003700 functional_description:"NAC-domain transcription factor (AHRD V1 *-** D3WFN5_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein " 1 7 7 19 opLeV0100000743 sgn|U235531 AGAGAAGGTTTGAAAGCATAAGATCCACCGTCGCAACACCAAGTGCAATACCTGGGCAACCTCTTCGTCC Experimental SGN-U582228 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|85068660|gb|ABC69410.1| (e_value=9e-72) CYP71AT2v3; (*ATH) AT5G57260.1 (e_value=1e-48) | Symbol: None | cytochrome P450 71B10, identical to cytochrome P450 71B10 (SP:Q9LVD2) (Arabidopsis thaliana) | chr5:23212835-23217499 REVERSE | Aliases: MJB24.7, MJB24_7, AT5G57250; (*SWP) sp|Q9LVD2|C71BA_ARATH (e_value=1e-47) Cytochrome P450 71B10 OS=Arabidopsis thaliana GN=CYP71B10; Solyc09g092600.2.1 genomic_reference:SL2.40ch09 gene_region:66968741-66970627 transcript_region:SL2.40ch09:66968741..66970627+ go_terms:GO:0019825 functional_description:"Cytochrome P450" 1 3 7 19 opLeV0100000744 sgn|U235625 TTACAGTTCCGGTTCAAACAAAGCCCAGAACTAAACGTCGGAGAATCGGCGGTCGAGTTTGGTCTTTCAC Experimental SGN-U592244 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147783505|emb|CAN64003.1| (e_value=6e-15) hypothetical; (*ATH) AT5G66320.2 (e_value=4e-14) | Symbol: None | zinc finger (GATA type) family protein | chr5:26513181-26514903 REVERSE | Aliases: None; (*SWP) sp|Q9FH57|GAT14_ARATH (e_value=4e-13) GATA transcription factor 14 OS=Arabidopsis thaliana GN=At5g66320; Solyc03g033660.2.1 genomic_reference:SL2.40ch03 gene_region:9529928-9531162 transcript_region:SL2.40ch03:9529928..9531162- go_terms:GO:0005634,GO:0006355 functional_description:"GATA transcription factor 9 (AHRD V1 *-*- B6STZ1_MAIZE); contains Interpro domain(s) IPR016679 Transcription factor, GATA, plant " 1 7 11 19 opLeV0100000745 sgn|U233508 CCACACATGTATGCTCATCTATCTTATCACACAGCTCGATCTCTATTACATATTGAAACCTGAATCTGCT Experimental SGN-U572673 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|118483587|gb|ABK93690.1| (e_value=2e-157) unknown; (*ATH) AT1G31660.1 (e_value=1e-137) | Symbol: None | bystin family, contains Pfam profile: PF05291 Bystin | chr1:11331157-11333519 REVERSE | Aliases: F27M3.14, F27M3_14; (*SWP) sp|Q5E9N0|BYST_BOVIN (e_value=2e-90) Bystin OS=Bos taurus GN=BYSL; Solyc07g056550.2.1 genomic_reference:SL2.40ch07 gene_region:61660092-61665125 transcript_region:SL2.40ch07:61660092..61665125+ go_terms:GO:0030515 functional_description:"Bystin (AHRD V1 ***- B5DGE9_SALSA); contains Interpro domain(s) IPR007955 Bystin " 1 3 11 19 opLeV0100000746 sgn|U212787 GATTGTCACATTGGCAATGTAGGCAGCAGTATCACACCAGGCACTAGGTCTAATGTATCATCTATAGCAG Experimental SGN-U579250 Tomato 200607#2 [30 ESTs aligned] (*GB) gi|398992|sp|P05116|ACCO1_SOLLC (e_value=4e-39) RecName:; (*ATH) AT1G05010.1 (e_value=9e-36) Symbol: None | 1-aminocyclopropane-1-carboxylate oxidase / ACC oxidase / ethylene-forming enzyme (ACO) (EAT1), Identical to 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase) gb:X66719 (EAT1). ESTs gb:T43073, gb:T5714, gb:R90435, gb:R44023, gb:... ; (*SWP) sp|P24157|ACCO4_SOLLC (e_value=2e-40) 1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4; Solyc12g098850.1.1 evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64573773-64575494 transcript_region:SL2.40ch12:64573773..64575494+ functional_description:"Soluble diacylglycerol acyltransferase (AHRD V1 *-*- B9S020_RICCO); contains Interpro domain(s) IPR012336 Thioredoxin-like fold " 1 7 15 19 opLeV0100000747 sgn|U240637 TTTGGCTGCATGTCTCCTTACTCGATTCATGGAAGCTACGTGGGGTTATATGGCAACGAGGACATGACAT Experimental SGN-U604045 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|21105751|gb|AAM34774.1|AF509874_1 (e_value=2e-21) nam-like; Solyc08g077110.2.1 genomic_reference:SL2.40ch08 gene_region:58200673-58202853 transcript_region:SL2.40ch08:58200673..58202853- go_terms:GO:0005515,GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9N2P7_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein " 1 3 15 19 opLeV0100000748 sgn|U227532 TCGGATGGATGGTCCGATACTAAAAGACGACCTTTGATCAATATAATGACATCATCTAGTGGAGGCCCAA Experimental SGN-U583403 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|218200935|gb|EEC83362.1| (e_value=1e-55) hypothetical; (*ATH) AT3G17450.1 (e_value=6e-15) | Symbol: None | hAT dimerisation domain-containing protein, contains Pfam profile PF04937: Protein of unknown function (DUF 659) | chr3:5972708-5976124 REVERSE | Aliases: MTO12.4; \N \N 3 7 7 19 opLeV0100000749 sgn|U214629 TTTAATCGGTGGAATGGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAG Experimental SGN-U570792 Tomato 200607#2 [46 ESTs aligned] (*GB) gi|157344494|emb|CAO69877.1| (e_value=6e-98) unnamed; (*ATH) AT2G31040.1 (e_value=6e-91) | Symbol: None | ATP synthase protein I -related, contains weaks similarity to Swiss-Prot:P08443 ATP synthase protein I (Synechococcus sp.) | chr2:13215983-13218162 REVERSE | Aliases: T16B12.15, T16B12_15; Solyc07g055050.2.1 genomic_reference:SL2.40ch07 gene_region:60505700-60510259 transcript_region:SL2.40ch07:60505700..60510259+ functional_description:"ATP synthase I-like protein (AHRD V1 **-- A8HNA8_CHLRE); contains Interpro domain(s) IPR008413 ATPase, F0 complex, subunit I, bacillus-type " 3 3 7 19 opLeV0100000750 sgn|U220009 GGGAGGGTAGTGTGTACGCAGACGTTTTCTGATAGACCCTCGGCTCAAATAATTAGCCAAATAGTCCAAC Experimental SGN-U583554 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|15242870|ref|NP_198334.1| (e_value=2e-126) calcineurin-like phosphoesterase family [Arabidopsis thaliana]; (*ATH) AT5G34850.1 (e_value=1e-128) | Symbol: None | calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase | chr5:13125384-13128653 REVERSE | Aliases: T5E15.10, T5E15_10; (*SWP) sp|Q949Y3|PPA26_ARATH (e_value=1e-127) Bifunctional purple acid phosphatase 26 OS=Arabidopsis thaliana GN=PAP26; \N \N 3 7 11 19 opLeV0100000751 sgn|U216991 CCAACATCCTAAACAAGGACCTCACTTTCCCTAGTAGCATTCCGGTAAGCCTTGCAGCTAGACAGGTGAT Experimental SGN-U565446 Tomato 200607#2 [43 ESTs aligned] (*GB) gi|113911589|gb|ABI48276.1| (e_value=0) phototropin-2; (*ATH) AT5G58140.1 (e_value=0) Symbol: None | protein kinase family protein / non phototropic hypocotyl 1-like protein (NPL1), contains Pfam domains, PF00069: Protein kinase domain and PF00785: PAC motif; similar to SP:O48963 Nonphototropic hypocotyl protein 1 (Photot... ; (*SWP) sp|P93025|PHOT2_ARATH (e_value=0) Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2; Solyc01g097770.2.1 genomic_reference:SL2.40ch01 gene_region:80240073-80252816 transcript_region:SL2.40ch01:80240073..80252816- go_terms:GO:0010181,GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D2V878_NAEGR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 3 3 11 19 opLeV0100000752 sgn|U237051 TTATACTTCACATCCCACCCCTCCTTAAGGGGCGGGCGGTTCGTTACCTCTCTAAAACCCAAAAAATTCC Experimental SGN-U598096 Tomato 200607#2 [1 ESTs aligned] \N \N 3 7 15 19 opLeV0100000753 sgn|U236750 AAACCCCCACATAATCATTACATGTCGGGCATGAAAAAACCCTTATCACTAATAAAACAAGGGCATACAC Experimental SGN-U580247 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157341431|emb|CAO49338.1| (e_value=4e-116) unnamed; (*ATH) AT1G67060.1 (e_value=6e-114) | Symbol: None | expressed protein | chr1:25040279-25043029 FORWARD | Aliases: F1O19.19, F1O19_19; \N \N 3 3 15 19 opLeV0100000754 sgn|U215243 GAAGGTTTTGAACAATGGCGGCTCTGCAGAGCTCCTTTACTGGTCTCTCCATCTCCTCCACCTCCTTCTT Experimental SGN-U566366 Tomato 200607#2 [61 ESTs aligned] (*GB) gi|400989|sp|Q02764|RK24_TOBAC (e_value=1e-77) 50S RIBOSOMAL PROTEIN L24, CHLOROPLAST PRECURSOR (CL24); (*ATH) AT5G54600.1 (e_value=1e-59) | Symbol: None | 50S ribosomal protein L24, chloroplast (CL24), identical to SP:P92959 50S ribosomal protein L24, chloroplast precursor {Arabidopsis thaliana} | chr5:22200204-22201793 FORWARD | Aliases: MRB17.10, MRB17_10; (*SWP) sp|Q02764|RK24_TOBAC (e_value=7e-79) 50S ribosomal protein L24, chloroplastic OS=Nicotiana tabacum GN=RPL24; Solyc07g063960.2.1 genomic_reference:SL2.40ch07 gene_region:63515688-63518536 transcript_region:SL2.40ch07:63515688..63518536+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L24 (AHRD V1 ***- B4FTJ3_MAIZE); contains Interpro domain(s) IPR003256 Ribosomal protein L24 " 2 8 5 19 opLeV0100000755 sgn|U221826 TTGACCAGGATGAGAACCTACGCCGAGGTCTACGTGGTGAAAGACGTCCACGTGGCAAAAACCAAAATAG Experimental SGN-U563608 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|116782780|gb|ABK22654.1| (e_value=8e-29) unknown; Solyc02g070690.1.1 evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:34932679-34933278 transcript_region:SL2.40ch02:34932679..34933278+ functional_description:"C2 domain-containing protein (AHRD V1 ***- D7LFS6_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein " 2 8 9 19 opLeV0100000756 sgn|U231937 ATACCCATGGCCATTGATTACTCGCGTTAAAAGATGTTGGGACAGGCTAAAAGAGTGGCTAGCCATAAAT Experimental SGN-U567358 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|182407842|gb|ACB87912.1| (e_value=1e-73) F-box-containing; (*ATH) AT1G06110.1 (e_value=9e-63) | Symbol: None | F-box family protein, contains similarity to F-box protein FBX3 GI:6103643 from (Homo sapiens) ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 | chr1:1853076-1855021 REVERSE | Aliases: T21E18.16, T21E18_16; Solyc06g053340.2.1 genomic_reference:SL2.40ch06 gene_region:32579636-32586698 transcript_region:SL2.40ch06:32579636..32586698+ go_terms:GO:0005515 functional_description:"ApaG protein (AHRD V1 *-*- A9F367_SORC5); contains Interpro domain(s) IPR007474 ApaG " 2 4 9 19 opLeV0100000757 sgn|U237423 TGTCCATGCTGCTGTAACCTCCCAATTTCTGTCTATTGATCGATAATAGTTCAATGCTCCAGTGAATCCA Experimental SGN-U566859 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|407944|gb|AAA81892.1| (e_value=2e-120) epoxide hydrolase; (*ATH) AT4G15960.1 (e_value=3e-111) | Symbol: None | epoxide hydrolase, putative, similar to epoxide hydrolase (Solanum tuberosum) GI:407944; contains Pfam profile PF00561: hydrolase, alpha/beta fold family | chr4:9045638-9047463 REVERSE | Aliases: DL4016C, FCAALL.242; (*SWP) sp|P80299|HYES_RAT (e_value=2e-43) Epoxide hydrolase 2 OS=Rattus norvegicus GN=Ephx2; Solyc01g066450.2.1 genomic_reference:SL2.40ch01 gene_region:66811956-66814675 transcript_region:SL2.40ch01:66811956..66814675+ go_terms:GO:0003824 functional_description:"Epoxide hydrolase (AHRD V1 ***- Q41415_SOLTU); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like " 2 8 13 19 opLeV0100000758 sgn|U217457 ACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCA Experimental SGN-U573741 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|195641006|gb|ACG39971.1| (e_value=2e-22) hypothetical; Solyc11g068490.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50278529-50278717 transcript_region:SL2.40ch11:50278529..50278717- functional_description:"cDNA clone J013021P22 full insert sequence (AHRD V1 ***- B7EAV4_ORYSJ)" 2 4 13 19 opLeV0100000759 sgn|U223896 GCTGATAATCAGATTCCTGGGAGAGTTGAGGAATCGAGTGTGATAGTTTCCACTCCCCACACTTTACAGG Experimental SGN-U585764 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|14280044|gb|AAK58859.1|AF328786_1 (e_value=0) EIL3; (*ATH) AT2G27050.1 (e_value=2e-150) | Symbol: None | ethylene-insensitive3-like1 (EIL1), identical to ethylene-insensitive3-like1 GI:2224927 from (Arabidopsis thaliana) | chr2:11552873-11555371 FORWARD | Aliases: T20P8.10, T20P8_10; (*SWP) sp|Q9SLH0|EIL1_ARATH (e_value=2e-149) ETHYLENE INSENSITIVE 3-like 1 protein OS=Arabidopsis thaliana GN=EIL1; Solyc01g096810.2.1 genomic_reference:SL2.40ch01 gene_region:79563681-79566235 transcript_region:SL2.40ch01:79563681..79566235- go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene insensitive 3 class transcription factor (AHRD V1 **** D5L146_MALDO); contains Interpro domain(s) IPR006957 Ethylene insensitive 3 " 4 4 5 19 opLeV0100000760 sgn|U215874 ATCTCTCCACCTATCTGCAACTAGGTTGGGCAAAAGAGCGAATGAAGAAACCATCAGGAATCTTTGCTCG Experimental SGN-U574966 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|116779054|gb|ABK21119.1| (e_value=2e-12) unknown; (*ATH) AT4G22140.2 (e_value=4e-11) Symbol: None | similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:At4g04260.1); similar to receptor like protein [Oryza sativa (japonica cultivar-group)] (GB:XP_482453.1); contains InterPro domain Zn-fing... ; Solyc01g110040.2.1 genomic_reference:SL2.40ch01 gene_region:88591498-88612650 transcript_region:SL2.40ch01:88591498..88612650- functional_description:"Transducin family protein (AHRD V1 ***- D7L1V6_ARALY)" 4 8 9 19 opLeV0100000761 sgn|U223809 CCTCCAGCCCAAGTTTCCAGGCAGAGTTGAAACGCCTGAGGATAGATTATGGTTGAACATTCACATGTGT Experimental SGN-U574236 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157357106|emb|CAO63600.1| (e_value=0) unnamed; (*ATH) AT1G12430.1 (e_value=0) | Symbol: None | armadillo/beta-catenin repeat family protein / kinesin motor family protein | chr1:4233871-4238757 REVERSE | Aliases: None; (*SWP) sp|Q9FZ06|ARK3_ARATH (e_value=0) Armadillo repeat-containing kinesin-like protein 3 OS=Arabidopsis thaliana GN=ARK3; Solyc08g079710.2.1 genomic_reference:SL2.40ch08 gene_region:60352611-60364478 transcript_region:SL2.40ch08:60352611..60364478+ go_terms:GO:0005515,GO:0015271 functional_description:"Kinesin (AHRD V1 *-*- D2W5Y5_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region " 4 4 9 19 opLeV0100000762 sgn|U215138 ATTGGGACGGATCATTCACTCATAACGCGGTGGTTGAGTCACTATATTTGGTACTCCTTGAAAAAGAGGG Experimental SGN-U573906 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|20149064|gb|AAM12787.1| (e_value=0) putative anthocyanidine rhamnosyl-transferase [Capsicum annuum]; (*ATH) AT2G22590.1 (e_value=2e-132) | Symbol: None | glycosyltransferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr2:9600076-9601615 FORWARD | Aliases: T9I22.3, T9I22_3; (*SWP) sp|Q43716|UFOG_PETHY (e_value=1e-55) Anthocyanidin 3-O-glucosyltransferase OS=Petunia hybrida GN=RT; Solyc11g010790.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3804355-3805767 transcript_region:SL2.40ch11:3804355..3805767+ go_terms:GO:0008152 functional_description:"Glucosyltransferase (AHRD V1 ***- A1YM58_IPOBA); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase " 4 8 13 19 opLeV0100000763 sgn|U226644 AAGAAGAGCCGGGGGAATAACGGTGGTTATGCACCGATGCGTGTGGTGGCGGAGAAGGTGGTGGGAATTG Experimental SGN-U564956 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|166919370|gb|ABZ04080.1| (e_value=9e-116) chloroplast; (*ATH) AT4G24280.1 (e_value=2e-106) Symbol: CPHSC70-1 | heat shock protein 70, putative / HSP70, putative, strong similarity to heat shock protein 70 (Arabidopsis thaliana) GI:6746592; similar to heat shock 70 protein - Spinacia oleracea,PID:g2654208 | chr4:12589998-12593640 FORWARD |... ; (*SWP) sp|Q02028|HSP7S_PEA (e_value=1e-105) Stromal 70 kDa heat shock-related protein, chloroplastic OS=Pisum sativum GN=HSP70; Solyc01g103450.2.1 genomic_reference:SL2.40ch01 gene_region:83821528-83826037 transcript_region:SL2.40ch01:83821528..83826037+ go_terms:GO:0005524,GO:0006457 functional_description:"Chaperone DnaK (AHRD V1 ***- Q1SKX2_MEDTR); contains Interpro domain(s) IPR012725 Chaperone DnaK " 4 4 13 19 opLeV0100000764 sgn|U224670 TATGTCGCCGCCCTTGTTTCGCGTACCGGAAGAAACAGAGCGTTGTCAGTACTGCAAAATAAATGGTTGT Experimental SGN-U586437 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|129560507|dbj|BAF48804.1| (e_value=1e-55) wound-responsive; (*ATH) AT4G34410.1 (e_value=2e-25) Symbol: None | encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. | chr4:1... ; (*SWP) sp|Q9SZ06|EF109_ARATH (e_value=2e-24) Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109; Solyc10g050970.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:46749337-46750008 transcript_region:SL2.40ch10:46749337..46750008+ go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding " 2 8 7 19 opLeV0100000765 sgn|U214457 GAAGCAACGATAGTAGCTTGCTGTGGGGAAGATGATCGCCTTGCCTTCTGTATTTGGATTCTGAACTGCA Experimental SGN-U571707 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|147863419|emb|CAN83614.1| (e_value=1e-34) hypothetical; (*ATH) AT4G00585.1 (e_value=3e-34) | Symbol: None | expressed protein | chr4:250955-252532 REVERSE | Aliases: None; Solyc03g025910.2.1 genomic_reference:SL2.40ch03 gene_region:7702186-7707084 transcript_region:SL2.40ch03:7702186..7707084- functional_description:"Unknown Protein (AHRD V1)" 2 4 7 19 opLeV0100000766 sgn|U238326 ATCCCCCTCCCAATCCAATGTGCTTCAAAATTGTTCCACTACCGGAGGAAAAAATTTTCTTTTTAATGGT Experimental SGN-U602896 Tomato 200607#2 [1 ESTs aligned] \N \N 2 8 11 19 opLeV0100000767 sgn|U216003 GGCAAGAGAGATGCGGCCAAGTTTCCGTCCTGAAATTGCTGGAACACACTGCATTGCAAATTTCGACAAG Experimental SGN-U584310 Tomato 200607#2 [29 ESTs aligned] (*GB) gi|15231959|ref|NP_187484.1| (e_value=0) ribosomal-protein S6 kinase (ATPK19) -related [Arabidopsis thaliana]; (*ATH) AT3G08720.2 (e_value=0) | Symbol: None | serine/threonine protein kinase (PK19), identical to serine/threonine-protein kinase AtPK19 (Ribosomal-protein S6 kinase homolog) (Arabidopsis thaliana) SWISS-PROT:Q39030 | chr3:2648518-2650991 REVERSE | Aliases: None; (*SWP) sp|Q39030|KPK19_ARATH (e_value=0) Serine/threonine-protein kinase AtPK19 OS=Arabidopsis thaliana GN=ATPK19; Solyc10g074930.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57961793-57964748 transcript_region:SL2.40ch10:57961793..57964748- go_terms:GO:0006468 functional_description:"Protein kinase 2 (AHRD V1 ***- D3BIR2_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 2 4 11 19 opLeV0100000768 sgn|U232927 AAGGCAAAGGAACTTACGGTTCTTGGGGAGGCAAAAGTTCCAATGGTTATAATTTCAAGAACGGAAAAAC Experimental \N \N \N \N 2 8 15 19 opLeV0100000769 sgn|U225825 TTCTGGGAAGGACGTTTCCCTTCCTGAGACCACTATAAGGAATCCCAGGAGGCCTCTTAGAAACCTCGGT Experimental SGN-U577085 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157327728|emb|CAO16155.1| (e_value=4e-110) unnamed; (*ATH) AT4G16745.1 (e_value=2e-103) | Symbol: None | exostosin family protein, contains Pfam PF03016: Exostosin family | chr4:9411914-9414133 FORWARD | Aliases: None; (*SWP) sp|O01704|EXT1_CAEEL (e_value=5e-12) Multiple exostoses homolog 1 OS=Caenorhabditis elegans GN=rib-1; Solyc08g007310.2.1 genomic_reference:SL2.40ch08 gene_region:1858666-1861740 transcript_region:SL2.40ch08:1858666..1861740- go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 ***- D7MCC1_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like " 2 4 15 19 opLeV0100000770 sgn|U240114 ACTAGCATTTTCGCTGTATTCCTGGACAATGACCGAATCCGCATCCTTTCTGACGTGACAGAAGAAACAA Experimental SGN-U604684 Tomato 200607#2 [1 ESTs aligned] \N \N 4 8 7 19 opLeV0100000771 sgn|U213700 ATTGTTCTACCAAAAGGACAAACCAATCGATGGTTGCGCAAAACTTGTTGAGGAGATGGAGCTTGTTGAT Experimental SGN-U567817 Tomato 200607#2 [58 ESTs aligned] (*GB) gi|125887|sp|P13447|LAT52_SOLLC (e_value=2e-48) RecName:; (*ATH) AT1G29140.1 (e_value=2e-26) | Symbol: None | pollen Ole e 1 allergen and extensin family protein, contains Pfam domain, PF01190: Pollen proteins Ole e I family | chr1:10179015-10180005 FORWARD | Aliases: F28N24.16, F28N24_16; (*SWP) sp|P13447|LAT52_SOLLC (e_value=1e-49) Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52; Solyc07g062560.2.1 genomic_reference:SL2.40ch07 gene_region:62468785-62469715 transcript_region:SL2.40ch07:62468785..62469715+ functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6TNI5_MAIZE); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin " 4 4 7 19 opLeV0100000772 sgn|U227887 GCTTTCAAGAAGTAAAACAATTGGTAGATGTTGGAGGTGCTCTTGGTTCAACTATGGCTTCTATAGTTTC Experimental SGN-U572294 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|154091348|gb|ABS57468.1| (e_value=2e-72) caffeic; (*ATH) AT5G54160.1 (e_value=4e-73) Symbol: None | quercetin 3-O-methyltransferase 1 / flavonol 3-O-methyltransferase 1 / caffeic acid/5-hydroxyferulic acid O-methyltransferase (OMT1), identical to O-methyltransferase 1 (Arabidopsis thaliana)(GI:2781394), SP:Q9FK25 Quercetin 3-O-methy... ; (*SWP) sp|Q9XGV9|COMT2_OCIBA (e_value=2e-72) Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2; Solyc06g007960.2.1 genomic_reference:SL2.40ch06 gene_region:1816553-1820314 transcript_region:SL2.40ch06:1816553..1820314+ go_terms:GO:0033799 functional_description:"O-methyltransferase (AHRD V1 **** Q9LWB8_9ROSI); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota " 4 4 11 19 opLeV0100000773 sgn|U213044 TGTCCCAGGAAATTCTGCTGGCACTGTCACTGCTTACTATTTGTCATCAC Experimental SGN-U593503 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|42795462|gb|AAS46241.1| (e_value=4e-85) xyloglucan endotransglucosylase-hydrolase XTH3 [Lycopersicon esculentum]; (*ATH) AT5G57550.1 (e_value=3e-64) Symbol: None | xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (XTR3), identical to endoxyloglucan transferase GI:5533317 from (Arabidopsis thaliana) | chr5:23322114-23323647 REVERSE | Aliases: MUA... ; (*SWP) sp|Q38907|XTH25_ARATH (e_value=2e-63) Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25; Solyc03g093130.2.1 genomic_reference:SL2.40ch03 gene_region:47752186-47753434 transcript_region:SL2.40ch03:47752186..47753434- go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 9 (AHRD V1 **** C0IRG8_9ERIC); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase IPR008263 Glycoside hydrolase, family 16, active site " 4 8 15 19 opLeV0100000774 sgn|U224843 CAGTCGCAGCAGCCGGCTCAGAGAATGGGGACATCAGTGCATAGTAGTAGTCCTGCGTTGGAATCAGCTA Experimental SGN-U582079 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157347599|emb|CAO18236.1| (e_value=6e-40) unnamed; (*ATH) AT3G10760.1 (e_value=3e-29) | Symbol: None | myb family transcription factor, contains Pfam profile: PF00249 myb-like DNA-binding domain | chr3:3369585-3371232 FORWARD | Aliases: T7M13.16; Solyc10g080960.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61464101-61464901 transcript_region:SL2.40ch10:61464101..61464901+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **-* D6MKQ8_9ASPA); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class " 4 4 15 19 opLeV0100000775 sgn|U213356 CTTCTTCATGTTCTCCATCATGGGTTCCTGAGTTTTCTAGAAGTTCAGTGAGGGATGTGAGGTGGTACCA Experimental SGN-U578087 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157336986|emb|CAO21332.1| (e_value=6e-91) unnamed; (*ATH) AT3G46870.1 (e_value=7e-86) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr3:17273987-17275460 FORWARD | Aliases: T6H20.100; (*SWP) sp|Q1PFH7|PPR89_ARATH (e_value=4e-40) Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350; Solyc09g092360.2.1 genomic_reference:SL2.40ch09 gene_region:66827771-66829521 transcript_region:SL2.40ch09:66827771..66829521- go_terms:GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LN61_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat " 2 7 5 19 opLeV0100000776 sgn|U221523 GACTAGAGATAAAGACAAGAAGACTGTGGAAGGCGCCGATGTTTTCTTAGGAGGCAGAATAGGGAGTGAC Experimental SGN-U585551 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|46367701|dbj|BAD15363.1| (e_value=0) nitrite reductase [Nicotiana tabacum]; (*ATH) AT2G15620.1 (e_value=0) Symbol: None | ferredoxin--nitrite reductase, putative, strong similarity to ferredoxin--nitrite reductase (Nicotiana tabacum) GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulp... ; (*SWP) sp|P38500|NIR_BETVE (e_value=0) Ferredoxin--nitrite reductase, chloroplastic OS=Betula verrucosa GN=NIR1; Solyc01g108630.2.1 genomic_reference:SL2.40ch01 gene_region:87640633-87643378 transcript_region:SL2.40ch01:87640633..87643378+ go_terms:GO:0005515 functional_description:"Nitrite reductase (AHRD V1 ***- Q76KB0_TOBAC); contains Interpro domain(s) IPR006067 Nitrite and sulphite reductase 4Fe-4S region " 2 3 5 19 opLeV0100000777 sgn|U217710 GTGGTAAAGATCAAAGTGTCAGTGGTTTCAGAACGCAGACCCAGCAGAAGAATACCTCTGCAGGCTACAA Experimental SGN-U568407 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157345112|emb|CAO71840.1| (e_value=2e-107) unnamed; (*ATH) AT3G50370.1 (e_value=1e-48) | Symbol: None | expressed protein | chr3:18687041-18694926 REVERSE | Aliases: F11C1.210; Solyc02g090760.2.1 genomic_reference:SL2.40ch02 gene_region:46848209-46856961 transcript_region:SL2.40ch02:46848209..46856961+ functional_description:"Os03g0395600 protein (Fragment) (AHRD V1 *-*- Q0DRD1_ORYSJ)" 2 7 9 19 opLeV0100000778 sgn|U225011 TCTTCCTCAGTTGGCGTCTGCCCAAGCTCTCAAGTTGAAGCAACTTACTGTGCTTACACTAGCTGATACA Experimental SGN-U563070 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147788695|emb|CAN69751.1| (e_value=1e-62) hypothetical; (*ATH) AT1G02090.1 (e_value=3e-56) Symbol: None | COP9 signalosome complex subunit 7ii / CSN complex subunit 7ii (CSN7) (COP15) / FUSCA protein (FUS5), FUSCA5, CSN7, COP15; identical to CSN complex subunit 7ii (Arabidopsis thaliana) GI:18056671, FUS5 protein of the COP9 complex GI:32... ; (*SWP) sp|Q94JU3|CSN7_ARATH (e_value=2e-55) COP9 signalosome complex subunit 7 OS=Arabidopsis thaliana GN=CSN7; Solyc01g090290.2.1 genomic_reference:SL2.40ch01 gene_region:75716147-75725527 transcript_region:SL2.40ch01:75716147..75725527+ go_terms:GO:0005515 functional_description:"COP9 signalosome complex subunit 7 (AHRD V1 ***- B4F8L1_MAIZE); contains Interpro domain(s) IPR000717 Proteasome component region PCI " 2 3 9 19 opLeV0100000779 sgn|U230800 TAGGTTCAAGAACATTGGTTCGTGAACTAGCTCGAGATCTAAAGTTCAAGACCACCGTACCCTATGGGGC Experimental SGN-U570688 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157352382|emb|CAO43445.1| (e_value=0) unnamed; (*ATH) AT5G42240.1 (e_value=0) | Symbol: SCPL42 | serine carboxypeptidase S10 family protein, similar to Serine carboxypeptidase II-3 precursor (SP:P52711) (CP-MII.3. (Hordeum vulgare) | chr5:16905461-16908420 FORWARD | Aliases: K5J14.4, K5J14_4, SCPL42; (*SWP) sp|Q9FH05|SCP42_ARATH (e_value=0) Serine carboxypeptidase-like 42 OS=Arabidopsis thaliana GN=SCPL42; Solyc01g104850.2.1 genomic_reference:SL2.40ch01 gene_region:84939746-84943822 transcript_region:SL2.40ch01:84939746..84943822+ go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase F13S12.6 (AHRD V1 **** B6U5K7_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase " 2 7 13 19 opLeV0100000780 sgn|U218204 TCGGGTGGATGGTCTTGGTTTCTCAAAATTGCCCAAGCCTTGGGAAGAACCAAGTTCACCATCAGCTTTT Experimental SGN-U574055 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|157356274|emb|CAO62409.1| (e_value=2e-58) unnamed; (*ATH) AT3G52220.1 (e_value=3e-56) | Symbol: None | expressed protein | chr3:19380340-19382033 REVERSE | Aliases: T25B15.5; (*SWP) sp|Q99LX5|MMTA2_MOUSE (e_value=4e-19) Multiple myeloma tumor-associated protein 2 homolog OS=Mus musculus GN=Mmtag2; Solyc11g006760.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1352696-1356684 transcript_region:SL2.40ch11:1352696..1356684+ functional_description:"Multiple myeloma tumor-associated protein 2 homolog (AHRD V1 *-*- B5X3A7_SALSA); contains Interpro domain(s) IPR019315 Kinase phosphorylation domain " 2 3 13 19 opLeV0100000781 sgn|U241638 TTTGGTTCTTTCCCTAGCCCTTGCTCTTGCTTTTTCCCTTGATTCCCTTTTATGAGGATTATTTTGCATA Experimental SGN-U602382 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|37726688|gb|AAO45726.1| (e_value=4e-19) TCP protein [Lycopersicon esculentum]; Solyc04g006980.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:687298-688425 transcript_region:SL2.40ch04:687298..688425- functional_description:"CYCLOIDEA-like group 1B protein (Fragment) (AHRD V1 *-*- Q6VM90_LUPAG); contains Interpro domain(s) IPR005333 Transcription factor, TCP " 4 7 5 19 opLeV0100000782 sgn|U218811 ACAAGCTATCTTCTAGAAAGGAATGGTTTAAGTGCTGGTTGGAGAGGATTTTCCATCTCTCACAGACTAC Experimental SGN-U565687 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157340986|emb|CAO47791.1| (e_value=1e-40) unnamed; (*ATH) AT3G19184.1 (e_value=6e-30) Symbol: None | similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:At5g58280.1); similar to Unknown protein [Oryza sativa] (GB:XP_470571.1); contains InterPro domain Transcriptional factor B3 (InterPro:IPR003340) | chr3:... ; Solyc01g108130.2.1 genomic_reference:SL2.40ch01 gene_region:87253005-87257799 transcript_region:SL2.40ch01:87253005..87257799+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At3g19184 (AHRD V1 *-*- Y3918_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 " 4 3 5 19 opLeV0100000783 sgn|U220205 CTCCTTGAGTTTTGCCCTGATCAGATGAGCTTGATGCTTTAGATACAAGAGCATTAGTAGAAGGGCGCTC Experimental SGN-U575026 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157357559|emb|CAO64128.1| (e_value=7e-24) unnamed; (*ATH) AT5G42210.1 (e_value=4e-14) | Symbol: None | expressed protein | chr5:16885004-16886226 FORWARD | Aliases: K5J14.1, K5J14_1; \N \N 4 7 9 19 opLeV0100000784 sgn|U213123 GTTGGCGCAGAATGTGCAATAGGGGAGGAAGAGTTTTGGCCATACTGCGTTGCTTGAAGACTTTTTGTCT Experimental SGN-U578741 Tomato 200607#2 [159 ESTs aligned] (*GB) gi|59668404|emb|CAI39242.1| (e_value=0) arginine decarboxylase [Lycopersicon esculentum]; (*ATH) AT4G34710.2 (e_value=0) | Symbol: None | arginine decarboxylase 2 (SPE2), identical to SP:O23141 Arginine decarboxylase 2 (EC 4.1.1.19) (ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana} | chr4:16560067-16562936 REVERSE | Aliases: None; (*SWP) sp|O23141|SPE2_ARATH (e_value=0) Arginine decarboxylase 2 OS=Arabidopsis thaliana GN=SPE2; Solyc10g054440.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:50892473-50894596 transcript_region:SL2.40ch10:50892473..50894596- go_terms:GO:0008792 functional_description:"Arginine decarboxylase (AHRD V1 **** Q5F307_SOLLC); contains Interpro domain(s) IPR002985 Arginine decarboxylase " 4 3 9 19 opLeV0100000785 sgn|U212812 TGTTGCTTTTCTGTTTCACAATCTTTGCTTTTGTGGTGACTAATAAGGGTGCTGGTGAAACAATTTCTGG Experimental SGN-U577907 Tomato 200607#2 [110 ESTs aligned] (*GB) gi|147858412|emb|CAN83511.1| (e_value=3e-82) hypothetical; (*ATH) AT2G23810.1 (e_value=1e-79) Symbol: None | similar to senescence-associated family protein [Arabidopsis thaliana] (TAIR:At4g30430.1); similar to senescence-associated protein DH [Zea mays] (GB:AAV31120.1); contains InterPro domain CD9/CD37/CD63 antigen (InterPro:IPR000301) | c... ; Solyc07g006280.2.1 genomic_reference:SL2.40ch07 gene_region:1069324-1072745 transcript_region:SL2.40ch07:1069324..1072745+ go_terms:GO:0016021 functional_description:"Senescence-associated protein (AHRD V1 ***- B3TLS7_ELAGV); contains Interpro domain(s) IPR000301 Tetraspanin, subgroup " 4 7 13 19 opLeV0100000786 sgn|U222242 CTTCTTCCTAACACTATCAAAACAGACAAGGCCTCTTTACTAGCAGAGGCAGTAAGGTGTGTAAGGGAAC Experimental SGN-U584664 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|115479113|ref|NP_001063150.1| (e_value=1e-26) Os09g0410700; (*ATH) AT1G68810.1 (e_value=2e-28) | Symbol: None | basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain | chr1:25864786-25866742 FORWARD | Aliases: T6L1.1, T6L1_1; Solyc04g014360.2.1 genomic_reference:SL2.40ch04 gene_region:4614412-4616761 transcript_region:SL2.40ch04:4614412..4616761- go_terms:GO:0003700 functional_description:"Transcription factor SPATULA (AHRD V1 *-** SPT_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH " 4 3 13 19 opLeV0100000787 sgn|U222323 GCTCCAGGCTTAATAGAGTTTTGAGCAAGTTGAAAACCAGAGGGTACTGGGGAAAATAGTCTGCTCATCC Experimental SGN-U570399 Tomato 200607#2 [9 ESTs aligned] \N \N 2 7 7 19 opLeV0100000788 sgn|U215197 CCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACC Experimental SGN-U581130 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|87162706|gb|ABD28501.1| (e_value=2e-99) Zinc; (*ATH) AT3G13810.1 (e_value=7e-96) | Symbol: None | zinc finger (C2H2 type) family protein, similar to finger protein pcp1 GB:S48856 from (Solanum tuberosum) contains Pfam domain, PF00096: Zinc finger, C2H2 type | chr3:4544497-4547417 FORWARD | Aliases: MCP4.2; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=9e-92) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP; Solyc08g063040.2.1 genomic_reference:SL2.40ch08 gene_region:49787174-49790203 transcript_region:SL2.40ch08:49787174..49790203+ go_terms:GO:0005622 functional_description:"Zinc finger protein (AHRD V1 *-*- Q9LVQ7_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type " 2 3 7 19 opLeV0100000789 sgn|U221553 GGCGCTAGAAGCCATCAATGCACTGCAAGAGAGTGAATTAGCTCGAAGCACCAATAATGAAGATTCCCCA Experimental SGN-U562864 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|15225334|ref|NP_180225.1| (e_value=4e-49) expressed protein [Arabidopsis thaliana]; (*ATH) AT2G26570.1 (e_value=4e-51) Symbol: None | expressed protein, contains Pfam profile PF05701: Plant protein of unknown function (DUF827); weak similarity to merozoite surface protein 3 alpha (GI:27596802) (Plasmodium vivax) | chr2:11306222-11309269 FORWARD | Aliases: T9J22.24, ... ; Solyc07g022910.2.1 genomic_reference:SL2.40ch07 gene_region:23226837-23229990 transcript_region:SL2.40ch07:23226837..23229990- functional_description:"Myosin heavy chain-like (AHRD V1 ***- Q8LHQ6_ORYSJ); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant " 2 7 11 19 opLeV0100000790 sgn|U217757 AAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATA Experimental SGN-U582468 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|147818278|emb|CAN64723.1| (e_value=1e-33) hypothetical; (*ATH) AT1G09250.1 (e_value=3e-29) | Symbol: None | expressed protein | chr1:2989380-2990352 FORWARD | Aliases: T12M4.4, T12M4_4; Solyc01g100660.2.1 genomic_reference:SL2.40ch01 gene_region:82403861-82404954 transcript_region:SL2.40ch01:82403861..82404954+ functional_description:"Transcription factor (AHRD V1 ***- D7L4N5_ARALY)" 2 3 11 19 opLeV0100000791 sgn|U222784 TCCGGAGCACGCCATTCAAGTTCTCGTTCAGTTTGACAAGTCAATGACTGAAGCTTTGGAGACTCAAGTA Experimental SGN-U564916 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|147775910|emb|CAN60284.1| (e_value=4e-48) hypothetical; (*ATH) AT4G24440.1 (e_value=2e-48) Symbol: None | transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S), identical to transcription initiation factor IIA gamma chain SP:Q39236 from (Arabidopsis thaliana); | chr4:12633192-12634768 FORWARD | Aliases: T22A6.270, T22A6_... ; (*SWP) sp|Q39236|T2AG_ARATH (e_value=2e-47) Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana GN=TFIIA-S; Solyc12g088030.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:61971197-61976224 transcript_region:SL2.40ch12:61971197..61976224- go_terms:GO:0005672 functional_description:"Transcription initiation factor IIA subunit 2 (AHRD V1 ***- B5X5Y3_SALSA); contains Interpro domain(s) IPR003194 Transcription initiation factor IIA, gamma subunit " 2 7 15 19 opLeV0100000792 sgn|U213128 GTTCACGAGTTCCTTTTTATGTTCTCCTGCTAAAGCTATTATGTTATCGTCCACAGTGAACTCGGGTCTG Experimental SGN-U580876 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|147776496|emb|CAN71887.1| (e_value=2e-66) hypothetical; (*ATH) AT5G09810.1 (e_value=6e-67) | Symbol: None | actin 7 (ACT7) / actin 2, identical to SP:P53492 Actin 7 (Actin-2) {Arabidopsis thaliana} | chr5:3052167-3054615 FORWARD | Aliases: MYH9.2, MYH9_2; (*SWP) sp|P30173|ACT13_SOLTU (e_value=2e-66) Actin-101 OS=Solanum tuberosum GN=AC101; \N \N 2 3 15 19 opLeV0100000793 sgn|U216801 CAATGGAGAAGAAACAAAGAGTTCCCTTATGGCTGGTGGTATGGTGTTGTAGGCCACTTGGAAACGTGTG Experimental SGN-U564242 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|157343214|emb|CAO67265.1| (e_value=9e-144) unnamed; (*ATH) AT2G32560.1 (e_value=2e-122) | Symbol: None | F-box family protein, contains Pfam PF00646: F-box domain; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 | chr2:13831871-13834063 FORWARD | Aliases: T26B15.12, T26B15_12, AT2G32570; (*SWP) sp|Q8RY82|FB121_ARATH (e_value=2e-121) F-box protein At2g32560 OS=Arabidopsis thaliana GN=At2g32560; Solyc11g065000.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47407870-47411425 transcript_region:SL2.40ch11:47407870..47411425+ functional_description:"F-box family protein (AHRD V1 ***- B9GG65_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box " 4 7 7 19 opLeV0100000794 sgn|U217046 GTGAAGTCTTTCTTTGATGCCAACTTGGCCCTCACAAAGCAGCCTCCAAAGTTTGACTTCAATGACCCGA Experimental SGN-U581813 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|1778436|gb|AAB40724.1| (e_value=0) ADP-glucose pyrophosphorylase large subunit [Lycopersicon esculentum]; (*ATH) AT1G27680.1 (e_value=0) | Symbol: None | glucose-1-phosphate adenylyltransferase large subunit 2 (APL2) / ADP-glucose pyrophosphorylase, identical to SP:P55230 | chr1:9631272-9634584 FORWARD | Aliases: T22C5.13, T22C5_13; (*SWP) sp|P55242|GLGL2_SOLTU (e_value=0) Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2; Solyc07g019440.2.1 genomic_reference:SL2.40ch07 gene_region:11193230-11198353 transcript_region:SL2.40ch07:11193230..11198353- go_terms:GO:0008878 functional_description:"Glucose-1-phosphate adenylyltransferase (AHRD V1 **** P93223_SOLLC); contains Interpro domain(s) IPR011831 Glucose-1-phosphate adenylyltransferase " 4 3 7 19 opLeV0100000795 sgn|U225121 GAGGAAACTGAGGCTGTAAAAGCAGAAACTACGAACGTAGAGGAGGAAACTGAGGTTGAGAAGGTTGAGG Experimental SGN-U576328 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|1730557|sp|P53535|PHSL2_SOLTU (e_value=0) Alpha-1,4; (*ATH) AT3G29320.1 (e_value=2e-150) | Symbol: None | glucan phosphorylase, putative, similar to alpha-glucan phosphorylase, L isozyme 1 precursor GB:P04045 from (Solanum tuberosum) (J. Biochem. 106 (4), 691-695 (1989)) | chr3:11254059-11259051 FORWARD | Aliases: MUO10.17; (*SWP) sp|P53535|PHSL2_SOLTU (e_value=0) Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum GN=STP-1; Solyc05g012510.2.1 genomic_reference:SL2.40ch05 gene_region:5760758-5767157 transcript_region:SL2.40ch05:5760758..5767157- go_terms:GO:0008184 functional_description:"Phosphorylase (AHRD V1 **** B9HXL0_POPTR); contains Interpro domain(s) IPR011833 Glycogen/starch/alpha-glucan phosphorylase " 4 7 11 19 opLeV0100000796 sgn|U233053 ATTACAGGATCCTCAGCCCAATAAGGCTCAATTTTGTCACCAATATATTCTTCATCTGGAGCATGATTAG Experimental SGN-U572039 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|1495802|emb|CAA65268.1| (e_value=0) 13-lipoxygenase [Solanum tuberosum]; (*ATH) AT3G45140.1 (e_value=0) | Symbol: None | lipoxygenase (LOX2), identical to SP:P38418 | chr3:16536395-16540337 FORWARD | Aliases: T14D3.80; (*SWP) sp|P38418|LOXC_ARATH (e_value=0) Lipoxygenase, chloroplastic OS=Arabidopsis thaliana GN=LOX2; Solyc12g011040.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3894074-3904280 transcript_region:SL2.40ch12:3894074..3904280- go_terms:GO:0046872,GO:0006096,GO:0055114 functional_description:"Lipoxygenase (AHRD V1 ***- O24370_SOLTU); contains Interpro domain(s) IPR001246 Lipoxygenase, plant " 4 3 11 19 opLeV0100000797 AJ606077 GTTGTCATGTGTGACATTGATAAGGAGGTTGTTGATTTCTGCAAGAAACATCTAACGGCAAACCATGAGG Experimental SGN-U569175 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|40788039|emb|CAE54353.1| (e_value=0) putative spermine synthase [Lycopersicon esculentum]; (*ATH) AT5G19530.2 (e_value=1e-137) |; (*SWP) sp|Q9YE02|SPEE_AERPE (e_value=1e-48) Probable spermidine synthase OS=Aeropyrum pernix GN=speE; Solyc08g061970.2.1 genomic_reference:SL2.40ch08 gene_region:47399954-47404859 transcript_region:SL2.40ch08:47399954..47404859+ go_terms:GO:0004766 functional_description:"Spermidine synthase (AHRD V1 **** A4RYD8_OSTLU); contains Interpro domain(s) IPR001045 Spermine synthase " 4 7 15 19 opLeV0100000798 sgn|U240995 GTGCTAACTGGGCTAAAATATATTCTCAACTTATAGGTGCTAAATCTTTGAAAGGCTAAGCAACTCTTAG Experimental SGN-U604159 Tomato 200607#2 [1 ESTs aligned] \N \N 4 3 15 19 opLeV0100000799 sgn|U222121 CACCAGTTCTAGGTGTGGGTTTTACTGGTGCCTTGGCTAGTGCACAACCAAAACGTGGAGATCATAGGTT Experimental SGN-U583996 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157338845|emb|CAO42196.1| (e_value=9e-161) unnamed; (*ATH) AT2G01220.1 (e_value=4e-150) | Symbol: None | expressed protein | chr2:123275-126406 FORWARD | Aliases: F10A8.10, F10A8_10, AT2G01230; Solyc05g008870.2.1 genomic_reference:SL2.40ch05 gene_region:3092114-3100433 transcript_region:SL2.40ch05:3092114..3100433+ go_terms:GO:0009058 functional_description:"Cytidyltransferase-related (AHRD V1 **-- B4FI85_MAIZE); contains Interpro domain(s) IPR004820 Cytidylyltransferase " 1 2 5 19 opLeV0100000800 sgn|U217019 CACGTTATCCTCTTCAATCTCAAAGGTCCTATGTAGCTTCTGCACATGATGAGGAAGCAGCTGCCAGGGC Experimental SGN-U576613 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|157338618|emb|CAO41969.1| (e_value=3e-52) unnamed; (*ATH) AT1G31160.1 (e_value=2e-51) Symbol: None | zinc-binding protein, putative / protein kinase C inhibitor, putative, similar to 14 kDa zinc-binding protein (Protein kinase C inhibitor, PKCI) (Zea mays) Swiss-Prot:P42856 | chr1:11122640-11124133 REVERSE | Aliases: F28K20.9, F28K20... ; (*SWP) sp|P42856|ZB14_MAIZE (e_value=6e-47) 14 kDa zinc-binding protein OS=Zea mays GN=ZBP14; Solyc02g068700.2.1 genomic_reference:SL2.40ch02 gene_region:33210914-33214494 transcript_region:SL2.40ch02:33210914..33214494- go_terms:GO:0042803 functional_description:"Histidine triad (HIT) protein (AHRD V1 **-- Q2MGQ9_MEDTR); contains Interpro domain(s) IPR001310 Histidine triad (HIT) protein " 1 6 9 19 opLeV0100000801 sgn|U235091 TCTACACCACCAACAACTTCTTTACAAATAGCTCCTACTTCTAGTAGCGATGACGAATCTGCTTATATTG Experimental SGN-U569831 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|14280354|gb|AAK57535.1| (e_value=1e-179) branched-chain amino acid aminotransferase [Capsicum annuum]; (*ATH) AT1G10070.2 (e_value=1e-136) Symbol: None | similar to branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) [Arabidopsis thaliana] (TAIR:At5g65780.1); similar to branched-chain amino acid aminotransferase 3 / branched-chain amino acid ... ; (*SWP) sp|Q9M439|BCAT2_ARATH (e_value=1e-135) Branched-chain-amino-acid aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=BCAT2; Solyc00g178340.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:18235638-18236558 transcript_region:SL2.40ch00:18235638..18236558+ go_terms:GO:0008152,GO:0009081 functional_description:"Branched-chain-amino-acid aminotransferase (AHRD V1 ***- Q94CF8_CAPAN); contains Interpro domain(s) IPR005786 Branched-chain amino acid aminotransferase II " 1 2 9 19 opLeV0100000802 sgn|U222874 GGCATTGGTGTGAGGAACTCGTTGATCGTCCTTGGTTGTGTTAACTTCCTCGGTATGCTGTTCACATTCT Experimental SGN-U578618 Tomato 200607#2 [26 ESTs aligned] (*GB) gi|2570523|gb|AAB82146.1| (e_value=0) inorganic phosphate transporter [Lycopersicon esculentum]; (*ATH) AT2G38940.1 (e_value=0) | Symbol: None | phosphate transporter (PT2), identical to phosphate transporter (AtPT2) (Arabidopsis thaliana) GI:1502430 | chr2:16264318-16267300 FORWARD | Aliases: T7F6.11, T7F6_11; (*SWP) sp|Q96303|PHT14_ARATH (e_value=0) Inorganic phosphate transporter 1-4 OS=Arabidopsis thaliana GN=PHT1-4; Solyc09g090070.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:64973106-64974722 transcript_region:SL2.40ch09:64973106..64974722+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** O22548_SOLLC); contains Interpro domain(s) IPR004738 Phosphate permease " 1 6 13 19 opLeV0100000803 sgn|U222025 GAACCATACTTCTTTCCGAGTACAAGTAATTGGAGTTTGTCGTAGCCAGAGAGGACACCAGCACCAGCGA Experimental SGN-U568647 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|45720467|emb|CAG17934.1| (e_value=2e-43) adenosine nucleotide translocator [Brassica oleracea var. acephala]; (*ATH) AT3G08580.2 (e_value=4e-44) Symbol: None | ADP, ATP carrier protein 1, mitochondrial / ADP/ATP translocase 1 / adenine nucleotide translocator 1 (ANT1), identical to SWISS-PROT:P31167 ADP,ATP carrier protein 1 (Adenine nucleotide translocator 1) (Arabidopsis thaliana) | chr3:2... ; (*SWP) sp|P25083|ADT1_SOLTU (e_value=2e-43) ADP,ATP carrier protein, mitochondrial OS=Solanum tuberosum GN=ANT; Solyc01g087070.2.1 genomic_reference:SL2.40ch01 gene_region:73772134-73774143 transcript_region:SL2.40ch01:73772134..73774143- go_terms:GO:0005471 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 **** Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 " 1 2 13 19 opLeV0100000804 sgn|U234878 ATGACATTCTTTCCACGTTGTTGAACCCTCCCAATAATGGAGCTTTTTTTTGCAGGACCAAAACCCAAAC Experimental SGN-U604184 Tomato 200607#2 [1 ESTs aligned] \N \N 3 6 5 19 opLeV0100000805 sgn|U237088 TGCAAAGTTCAGCTGAGTGGTTCTTCAGTTTTCACTAAAGCAATGTTAAGCGATTTTCTATCTGGTCAAC Experimental SGN-U597601 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157329883|emb|CAO42784.1| (e_value=2e-21) unnamed; (*ATH) AT1G61140.1 (e_value=7e-18) Symbol: None | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related, similar to ATPase (Homo sapiens) GI:531196; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family ... ; Solyc03g006570.2.1 genomic_reference:SL2.40ch03 gene_region:1137306-1149345 transcript_region:SL2.40ch03:1137306..1149345- go_terms:GO:0005524,GO:0008270 functional_description:"DNA repair protein RAD5 (AHRD V1 *--- A8N3A4_COPC7); contains Interpro domain(s) IPR000330 SNF2-related " 3 2 5 19 opLeV0100000806 sgn|U226350 AACAATGAAAAAGCATAGGAAGGTGGGTCCATAATGTGTAGAGGAGTGGGGAAAGAATGGATCTGACATG Experimental SGN-U571612 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|157354310|emb|CAO46911.1| (e_value=0) unnamed; (*ATH) AT1G59750.3 (e_value=0) Symbol: None | similar to transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related [Arabidopsis thaliana] (TAIR:At2g46530.1); similar to OSJNBa0064D20.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE04227.2); contains In... ; (*SWP) sp|Q8L7G0|ARFA_ARATH (e_value=0) Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1; Solyc01g103050.2.1 genomic_reference:SL2.40ch01 gene_region:83494825-83500792 transcript_region:SL2.40ch01:83494825..83500792+ go_terms:GO:0005515,GO:0003700 functional_description:"Auxin response factor 1 (AHRD V1 **** D9I2J0_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor " 3 6 9 19 opLeV0100000807 sgn|U222731 TGAAGGTTTGTTTGAGGAATTGCTGGAGAAGTTGAAGGTGAAGCCGGATG Experimental SGN-U582865 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157331567|emb|CAO65949.1| (e_value=8e-110) unnamed; (*ATH) AT3G13160.1 (e_value=2e-95) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr3:4229978-4231293 REVERSE | Aliases: MJG19.11; (*SWP) sp|Q9LG23|PPR82_ARATH (e_value=1e-93) Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana GN=At1g55890; Solyc03g031460.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:8282974-8284113 transcript_region:SL2.40ch03:8282974..8284113+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KN35_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat " 3 2 9 19 opLeV0100000808 sgn|U238202 AGGAAAAAGTGTGTGAGTGGTTGGCTTCATCCCCTGGCTAGACCATCTGTTCACAAAACCCACCTAAATT Experimental SGN-U601824 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157344646|emb|CAO70029.1| (e_value=4e-18) unnamed; (*ATH) AT3G58830.1 (e_value=4e-18) Symbol: None | haloacid dehalogenase (HAD) superfamily protein, contains TIGRfam TIGR01668: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 and TIGR01662: hydrolase, HAD-superfamily, subfamily IIIA | chr3:21766033-21767615 REVERSE | Aliases:... ; Solyc07g055980.2.1 genomic_reference:SL2.40ch07 gene_region:61203405-61207625 transcript_region:SL2.40ch07:61203405..61207625- go_terms:GO:0003824 functional_description:"HAD superfamily (Subfamily IIIA) phosphatase TIGR01668 (AHRD V1 *-*- B1I3D3_DESAP); contains Interpro domain(s) IPR010021 HAD-superfamily phosphatase, subfamily IIIA " 3 6 13 19 opLeV0100000809 sgn|U220756 TATCTTTTACAGTCAACCGCAAAACTGTAACAGGACGGGTCTGTCCAATCCGATGTGCCCTGTCAATTGC Experimental SGN-U569229 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157330263|emb|CAO44997.1| (e_value=3e-37) unnamed; (*ATH) AT1G61140.1 (e_value=1e-35) Symbol: None | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related, similar to ATPase (Homo sapiens) GI:531196; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family ... ; (*SWP) sp|O60177|YG42_SCHPO (e_value=2e-17) Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe GN=SPBC23E6.02; Solyc03g006570.2.1 genomic_reference:SL2.40ch03 gene_region:1137306-1149345 transcript_region:SL2.40ch03:1137306..1149345- go_terms:GO:0005524,GO:0008270 functional_description:"DNA repair protein RAD5 (AHRD V1 *--- A8N3A4_COPC7); contains Interpro domain(s) IPR000330 SNF2-related " 1 6 7 19 opLeV0100000810 sgn|U216500 AAGGTCCTTAGTCGGTTCATTCGAGGAGTCACTATTATCTGGTCGTTTGACATCCAGTGTAGTCAGCCAG Experimental SGN-U573292 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|157343855|emb|CAO68361.1| (e_value=9e-144) unnamed; (*ATH) AT5G41110.1 (e_value=1e-89) | Symbol: None | expressed protein, ; expression supported by MPSS | chr5:16469826-16472217 FORWARD | Aliases: MEE6.18, MEE6_18; Solyc03g097710.2.1 genomic_reference:SL2.40ch03 gene_region:53499139-53506306 transcript_region:SL2.40ch03:53499139..53506306+ functional_description:"Genomic DNA chromosome 5 P1 clone MEE6 (AHRD V1 *-*- Q9FLL8_ARATH)" 1 2 7 19 opLeV0100000811 sgn|U222730 ATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACG Experimental SGN-U586550 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|118486583|gb|ABK95130.1| (e_value=0) unknown; (*ATH) AT5G66080.1 (e_value=5e-168) Symbol: None | protein phosphatase 2C family protein / PP2C family protein, similar to Ser/Thr protein phosphatase 2C (PP2C6) (GI:15020818) (Arabidopsis thaliana); similar to protein phosphatase 2C (GI:3608412) (Mesembryanthemum crystallinum); conta... ; (*SWP) sp|Q9LUS8|P2CH1_ARATH (e_value=2e-32) Probable protein phosphatase 2C homolog 1 OS=Arabidopsis thaliana GN=At3g16560; Solyc02g083420.2.1 genomic_reference:SL2.40ch02 gene_region:41410375-41413887 transcript_region:SL2.40ch02:41410375..41413887- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- B6SYG9_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C " 1 6 11 19 opLeV0100000812 sgn|U223257 TTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCAC Experimental SGN-U585028 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157338577|emb|CAO41928.1| (e_value=5e-41) unnamed; (*ATH) AT3G47630.2 (e_value=5e-37) | Symbol: None | similar to Hypothetical protein CBG04116 [Caenorhabditis briggsae] (GB:CAE60498.1) | chr3:17574031-17576414 REVERSE | Aliases: None; Solyc02g081840.2.1 genomic_reference:SL2.40ch02 gene_region:40211209-40215580 transcript_region:SL2.40ch02:40211209..40215580+ go_terms:GO:0005515 functional_description:"MMP37-like protein mitochondrial (AHRD V1 ***- C1C198_9MAXI); contains Interpro domain(s) IPR015222 Mitochondrial matrix Mmp37 " 1 2 11 19 opLeV0100000813 sgn|U225250 TCGGGACATTGTATAAGTCAATCATGGACGAGAAGGACGAAGAGGAGGATATGAGAGAAGCGTTCAACGT Experimental SGN-U572481 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|28301674|emb|CAB63264.3| (e_value=1e-49) calcium-binding protein [Lotus corniculatus var. japonicus]; (*ATH) AT3G07490.1 (e_value=5e-49) | Symbol: None | calcium-binding protein, putative, similar to calcium-binding protein GI:6580549 from (Lotus japonicus) | chr3:2391195-2391656 FORWARD | Aliases: F21O3.20; (*SWP) sp|Q9SRR7|CML3_ARATH (e_value=5e-48) Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3; Solyc06g083000.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44867806-44868255 transcript_region:SL2.40ch06:44867806..44868255- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q6RZU7_MUSAC); contains Interpro domain(s) IPR011992 EF-Hand type " 1 6 15 19 opLeV0100000814 sgn|U234643 ATAGTCTCACATCCCCAACGGATTGAATCCTGTTCTTTTTGACCCAACTCAATGTTACCCTGTTCCGAAG Experimental SGN-U603610 Tomato 200607#2 [1 ESTs aligned] Solyc09g057920.2.1 genomic_reference:SL2.40ch09 gene_region:47851951-47865894 transcript_region:SL2.40ch09:47851951..47865894+ functional_description:"N-alpha-acetyltransferase 25, NatB auxiliary subunit (AHRD V1 *--- NAA25_RAT); contains Interpro domain(s) IPR019183 N-acetyltransferase B complex, non-catalytic subunit " 1 2 15 19 opLeV0100000815 sgn|U219522 CGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTA Experimental SGN-U566193 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|118562906|dbj|BAF37796.1| (e_value=4e-94) hypothetical; (*ATH) AT3G22435.1 (e_value=3e-19) | Symbol: None | XS domain-containing protein, contains Pfam profile PF03468: XS domain | chr3:7956255-7957891 FORWARD | Aliases: None; Solyc11g066990.1.1 evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:49847837-49848794 transcript_region:SL2.40ch11:49847837..49848794+ functional_description:"Protein SUPPRESSOR OF GENE SILENCING 3 (AHRD V1 **-- SGS3_ARATH)" 3 6 7 19 opLeV0100000816 sgn|U222430 CTTGCTGAGAGGCTTGGTAAAGATTTTCCTCTGGATTCTAGCTCTGGGCTGTTTAGATGTGCTGTTTGCC Experimental SGN-U585750 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|147791475|emb|CAN74505.1| (e_value=0) hypothetical; (*ATH) AT1G09160.2 (e_value=0) | Symbol: None | protein phosphatase 2C-related / PP2C-related, similar to GB:AAC16260 | chr1:2952773-2955606 REVERSE | Aliases: None; (*SWP) sp|P49597|PP2C1_ARATH (e_value=2e-20) Protein phosphatase 2C ABI1 OS=Arabidopsis thaliana GN=ABI1; Solyc01g100110.2.1 genomic_reference:SL2.40ch01 gene_region:81958432-81962536 transcript_region:SL2.40ch01:81958432..81962536- go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C " 3 2 7 19 opLeV0100000817 sgn|U213979 CGACCCCCCTATAGATTTCTCATGTTTCGTCTTGTGTTGACACCACCTGGTTTCGAATTGAGGAAGAGCT Experimental SGN-U566667 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|118485142|gb|ABK94434.1| (e_value=0) unknown; (*ATH) AT5G46630.1 (e_value=0) Symbol: None | clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family; similar to micro-adaptins of clathrin coated vesicle adaptor complexes | chr5:18937675-18940718 FORWARD ... ; (*SWP) sp|P54672|AP2M_DICDI (e_value=2e-112) AP-2 complex subunit mu OS=Dictyostelium discoideum GN=apm2; Solyc08g006960.2.1 genomic_reference:SL2.40ch08 gene_region:1538603-1546249 transcript_region:SL2.40ch08:1538603..1546249- go_terms:GO:0030276 functional_description:"AP-2 complex subunit mu (AHRD V1 ***- B6TIQ4_MAIZE); contains Interpro domain(s) IPR015629 Clathrin coat associated protein AP-50 " 3 6 11 19 opLeV0100000818 sgn|U219334 GGTCTCAAAGAGGCTTATGCTATCCGAGGTGGGATAAGAGGCAAGAAAGGATGGCAGGAGATCCAAGAAA Experimental SGN-U572583 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157328912|emb|CAO23324.1| (e_value=4e-89) unnamed; (*ATH) AT3G25480.1 (e_value=1e-59) | Symbol: None | rhodanese-like domain-containing protein, contains Rhodanese-like domain PF:00581 | chr3:9236435-9237844 REVERSE | Aliases: MWL2.9; (*SWP) sp|Q9M158|Y4105_ARATH (e_value=2e-23) Uncharacterized protein At4g01050 OS=Arabidopsis thaliana GN=At4g01050; Solyc09g042770.2.1 genomic_reference:SL2.40ch09 gene_region:30120239-30123037 transcript_region:SL2.40ch09:30120239..30123037+ functional_description:"Rhodanese-like (AHRD V1 **-- A2Q5X2_MEDTR); contains Interpro domain(s) IPR001763 Rhodanese-like " 3 2 11 19 opLeV0100000819 sgn|U220066 ATTGTCGCATCATATCGATGGTGATGTCCTCCGGTGTTGGCAAACTTGTTAGAAATTCTTGTGCCTCTAA Experimental SGN-U582481 Tomato 200607#2 [3 ESTs aligned] \N \N 3 6 15 19 opLeV0100000820 sgn|U227392 TTACTCAAACCTATGCGCCAACCTGGTCAGAAACTGCCTTAAGGAGCCTTACAAGTCCGAAGCTTTGAGC Experimental SGN-U579672 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|543868|sp|Q06450|ATP5E_IPOBA (e_value=2e-29) ATP; (*ATH) AT1G51650.1 (e_value=4e-31) | Symbol: None | ATP synthase epsilon chain, mitochondrial, identical to ATP synthase epsilon chain, mitochondrial SP:Q96253 from (Arabidopsis thaliana) | chr1:19156283-19157597 FORWARD | Aliases: F19C24.25, F19C24_25; (*SWP) sp|Q06450|ATP5E_IPOBA (e_value=2e-30) ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas; Solyc06g063220.2.1 genomic_reference:SL2.40ch06 gene_region:36320862-36322674 transcript_region:SL2.40ch06:36320862..36322674- go_terms:GO:0048029,GO:0004331,GO:0003872 functional_description:"ATP synthase subunit epsilon mitochondrial (AHRD V1 ***- C1BV39_9MAXI); contains Interpro domain(s) IPR006721 ATPase, F1 complex, epsilon subunit, mitochondrial " 3 2 15 19 opLeV0100000821 sgn|U238720 AACTGGGAGAGGGTGTAATGCCAGCTAGTTTCAAGGTACTCCATGATCCGGTTAGAAATACCGAGACATT Experimental SGN-U579335 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|163913876|emb|CAP59641.1| (e_value=0) putative; (*ATH) AT4G34860.2 (e_value=0) Symbol: None | similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:At4g09510.1); similar to beta-fructofuranosidase, putative / invertase, putative / sa... ; Solyc01g111100.2.1 genomic_reference:SL2.40ch01 gene_region:89238272-89243370 transcript_region:SL2.40ch01:89238272..89243370- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase " 1 5 5 19 opLeV0100000822 sgn|U216422 TGAAAAAGCCAAGATCCTCCGTGAAAAGCTCCGTTGGTGCTACCGTATCGAAGGTGTTAACCATCTTCAG Experimental SGN-U572400 Tomato 200607#2 [30 ESTs aligned] (*GB) gi|118484036|gb|ABK93904.1| (e_value=2e-46) unknown; (*ATH) AT1G49140.1 (e_value=2e-44) Symbol: None | NADH-ubiquinone oxidoreductase-related, similar to NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-12KD) (CI-12KD). (Swiss-Prot:Q03015) (Neurospora crassa) | chr1:18180440-1... ; (*SWP) sp|Q9M9B4|NDUS6_ARATH (e_value=1e-43) NADH dehydrogenase [ubiquinone] iron-sulfur protein 6 OS=Arabidopsis thaliana GN=At1g49140; Solyc12g036790.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:32765403-32770909 transcript_region:SL2.40ch12:32765403..32770909- functional_description:"NADH-ubiquinone oxidoreductase subunit (AHRD V1 *-*- C1GT14_PARBA)" 1 1 5 19 opLeV0100000823 sgn|U218846 GAGAGAGGGTTAGGTATGTTGTGTTTTCCCAGAGCTCGTTCGAGCTAACCAACGTGTAGTTTAGAGGAAG Experimental SGN-U575252 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157349159|emb|CAO24305.1| (e_value=4e-53) unnamed; (*ATH) AT4G00850.1 (e_value=3e-35) Symbol: None | SSXT family protein, low similarity to synovial sarcoma associated SS18-delta (Mus musculus) GI:17978535; contains Pfam profile PF05030: SSXT protein (N-terminal region) | chr4:357568-359194 FORWARD | Aliases: A_TM018A10.22, A_TM018A1... ; (*SWP) sp|Q62280|SSXT_MOUSE (e_value=3e-11) SSXT protein OS=Mus musculus GN=Ss18; Solyc10g009280.2.1 genomic_reference:SL2.40ch10 gene_region:3267235-3271023 transcript_region:SL2.40ch10:3267235..3271023- go_terms:GO:0003713 functional_description:"Calcium-responsive transcription coactivator (AHRD V1 *--* CREST_RAT); contains Interpro domain(s) IPR007726 SSXT " 1 5 9 19 opLeV0100000824 sgn|U221225 GCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTGTTAATTGCAGGTCAACCAATGGG Experimental \N \N \N \N 1 1 9 19 opLeV0100000825 sgn|U218934 AATTGCTGGGTTTCCCAAGATACAATGGCGAGCCCTTGATGAAATAAATGCTGGTGTTTGTGACGGGATG Experimental SGN-U562989 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|157337076|emb|CAO21422.1| (e_value=0) unnamed; (*ATH) AT1G07110.1 (e_value=0) Symbol: None | fructose-6-phosphate 2-kinase / fructose-2,6-bisphosphatase (F2KP), identical to fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase (F2KP) (Arabidopsis thaliana) GI:13096098 | chr1:2178103-2184135 REVERSE | Aliases: F10K1.19, F... ; (*SWP) sp|P16118|F261_HUMAN (e_value=1e-96) 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 OS=Homo sapiens GN=PFKFB1; Solyc06g082150.2.1 genomic_reference:SL2.40ch06 gene_region:44342666-44357079 transcript_region:SL2.40ch06:44342666..44357079+ go_terms:GO:0030246,GO:0008152,GO:0006000,GO:0006003,GO:0005975 functional_description:"6-phosphofructo-2-kinase/fructose-2 6-biphosphatase 4 (AHRD V1 *-*- Q7T325_DANRE); contains Interpro domain(s) IPR016260 Bifunctional 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphate 2-phosphatase " 1 5 13 19 opLeV0100000826 sgn|U224408 GAGGTGAGGTGGCGAGTTGATGACGTATTATTAGGTGGGGTCCATTGGACCGTCGAAAATATCTTCTTCT Experimental SGN-U583916 Tomato 200607#2 [8 ESTs aligned] \N \N 1 1 13 19 opLeV0100000827 sgn|U227770 GTGCATCAATAAACTCCAGAGTTAGTACAAAAGCAAGAGACATGAGACGTCAACGGAATAGAGGGAAAAT Experimental SGN-U563374 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|147843466|emb|CAN82069.1| (e_value=4e-42) hypothetical; (*ATH) AT5G13680.1 (e_value=3e-38) Symbol: None | IKI3 family protein, weak similarity to SP:O95163 IkappaB kinase complex-associated protein (IKK complex-associated protein) (p150) {Homo sapiens}; contains Pfam profile PF04762: IKI3 family | chr5:4410364-4415474 REVERSE | Aliases: M... ; Solyc05g054630.2.1 genomic_reference:SL2.40ch05 gene_region:63646653-63652887 transcript_region:SL2.40ch05:63646653..63652887+ go_terms:GO:0003711 functional_description:"Elongator complex protein (AHRD V1 ***- C6H856_AJECH); contains Interpro domain(s) IPR006849 IKI3 " 3 5 5 19 opLeV0100000828 sgn|U218355 CTGCTCTTTCATTAGTGATGGATGCCATCTGGGGATGGTCCGATGAAGGTCCACGATCCAGTTACAAGAA Experimental SGN-U578158 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|157349610|emb|CAO38748.1| (e_value=4e-32) unnamed; (*ATH) AT3G04310.1 (e_value=2e-19) | Symbol: None | expressed protein | chr3:1141588-1142535 REVERSE | Aliases: T6K12.7, T6K12_7; Solyc04g050270.1.1 evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:45673983-45674459 transcript_region:SL2.40ch04:45673983..45674459- functional_description:"Unknown Protein (AHRD V1)" 3 1 5 19 opLeV0100000829 sgn|U221333 GGTTATATTCGGGTCGGGTATGTTGTTGAATATTTGGGCCGATGGGGTTTTGTTGGGCCTGAAGAGTCAA Experimental SGN-U575501 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|57335416|emb|CAH05260.1| (e_value=2e-153) steroid 5 alpha reductase DET2 [Lycopersicon esculentum]; (*ATH) AT2G38050.1 (e_value=1e-84) | Symbol: None | 3-oxo-5-alpha-steroid 4-dehydrogenase, putative / steroid 5-alpha-reductase, putative, identical to gi:1280611; contains a steroid 5-alpha reductase, C-terminal domain | chr2:15928019-15929391 REVERSE | Aliases: T8P21.4, T8P21_4; (*SWP) sp|Q38944|DET2_ARATH (e_value=1e-83) Probable steroid reductase DET2 OS=Arabidopsis thaliana GN=DET2; Solyc10g086500.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64629234-64630007 transcript_region:SL2.40ch10:64629234..64630007+ go_terms:GO:0016020,GO:0016021 functional_description:"3-oxo-5-alpha-steroid 4-dehydrogenase family protein expressed (AHRD V1 ***- Q53NE6_ORYSJ); contains Interpro domain(s) IPR016636 3-oxo-5-alpha-steroid 4-dehydrogenase IPR001104 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal " 3 5 9 19 opLeV0100000830 sgn|U228774 GAAGCAGAAGGGAGAGCTGGAGGGAAGTTACGAAGCCTGAGTCAAGATGGCCTAATATGGGATGAAGGCG Experimental SGN-U592555 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|3093412|emb|CAA12401.1| (e_value=6e-51) protoporphyrinogen; (*ATH) AT5G14220.1 (e_value=3e-38) Symbol: None | protoporphyrinogen oxidase, putative, similar to protoporphyrinogen IX oxidase, mitochondrial (PPO II) from Nicotiana tabacum (SP:O24164), Glycine max, AB025102, Spinacia oleracea (GI:14349153); contains Pfam amine oxidase, flavin-con... ; (*SWP) sp|O24164|PPOM_TOBAC (e_value=2e-50) Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum GN=PPXII; Solyc03g005080.2.1 genomic_reference:SL2.40ch03 gene_region:54076-59635 transcript_region:SL2.40ch03:54076..59635- go_terms:GO:0055114 functional_description:"Protoporphyrinogen IX oxidase (AHRD V1 ***- Q9SLW5_SOYBN); contains Interpro domain(s) IPR004572 Protoporphyrinogen oxidase " 3 1 9 19 opLeV0100000831 sgn|U214796 GGACCGGATCATTTTCCGTTCCAGGGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTA Experimental SGN-U590075 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|2494076|sp|P93338|GAPN_NICPL (e_value=1e-104) NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (Non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase) (Glyceraldehyde-3-phosphate dehydrogenase [NADP+]) (Triosephosphate dehydrogenase); (*ATH) AT2G24270.2 (e_value=1e-101) Symbol: None | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative, similar to NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (NON-phosphorylating glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase (NADP+)) (... ; (*SWP) sp|P93338|GAPN_NICPL (e_value=1e-105) NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Nicotiana plumbaginifolia GN=GAPN; Solyc07g005390.2.1 genomic_reference:SL2.40ch07 gene_region:296474-302315 transcript_region:SL2.40ch07:296474..302315+ go_terms:GO:0004028 functional_description:"Aldehyde dehydrogenase (AHRD V1 **** A7GLM2_BACCN); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase " 3 5 13 19 opLeV0100000832 sgn|U233400 CTGATAAAATGACCTCGGCTGCTTGTTTTGTGCAGCTTGCTGGCCAACATCTTCTTTGCTAATAAAAATA Experimental SGN-U596941 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157346034|emb|CAO15731.1| (e_value=1e-13) unnamed; (*ATH) AT5G02020.1 (e_value=1e-11) | Symbol: None | expressed protein | chr5:386079-388120 REVERSE | Aliases: T7H20.70, T7H20_70; Solyc09g011470.2.1 genomic_reference:SL2.40ch09 gene_region:4793545-4796953 transcript_region:SL2.40ch09:4793545..4796953+ functional_description:"Unknown Protein (AHRD V1)" 3 1 13 19 opLeV0100000833 sgn|U219799 AAGTTGCCAAGGAAGGATAACAGCTTCACGGATGGAAGTTCCTCAAGTAAATGTTCATCATCCCATAGTG Experimental SGN-U573885 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|147815026|emb|CAN74571.1| (e_value=7e-78) hypothetical; (*ATH) AT3G19860.2 (e_value=5e-67) Symbol: None | similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:At4g36060.1); similar to putative amelogenin precursor [Oryza sativa] (GB:XP_470739.1); contains InterPro domain Proline-rich region (InterPro:IPR000... ; Solyc01g111130.2.1 genomic_reference:SL2.40ch01 gene_region:89262003-89265946 transcript_region:SL2.40ch01:89262003..89265946- go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *--* D6MK24_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding " 1 5 7 19 opLeV0100000834 sgn|U226866 CCACTGTGTCCCTTCCCTCCCGCCATACTACCATGATCACACCTGCAGTTGCTTAGTATATGGCTCAACG Experimental SGN-U582075 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147806270|emb|CAN59807.1| (e_value=1e-35) hypothetical; (*ATH) AT1G49390.1 (e_value=7e-29) Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase GI:311658 from (Petunia hybrida), leucoanthocyanidin dioxygenase (Malus domestica)(SP:P51091); contains PF03171 2OG-Fe(II) oxygenase superfamily domain ... ; (*SWP) sp|Q07512|FLS_PETHY (e_value=8e-16) Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL; \N \N 1 1 7 19 opLeV0100000835 sgn|U217393 TAGGGCAAATGTTACAAGTATCATTCTGGACAATGGCAAAGCTGTGGGAGTGAAGCTTTCTGACGGGAGG Experimental SGN-U584987 Tomato 200607#2 [31 ESTs aligned] (*GB) gi|75159637|sp|Q8S4R4|CRTSO_SOLLC (e_value=0) RecName:; (*ATH) AT1G06820.1 (e_value=0) Symbol: None | carotenoid isomerase, putative, similar to carotenoid isomerase from Lycopersicon esculentum (gi:19550437); contains Pfam profile: PF02032 Phytoene dehydrogenase related enzyme | chr1:2092996-2096231 REVERSE | Aliases: F4H5.10, F4H5_1... ; (*SWP) sp|Q8S4R4|CRTSO_SOLLC (e_value=0) Carotenoid isomerase, chloroplastic OS=Solanum lycopersicum GN=CRTISO; Solyc10g081650.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62006972-62011520 transcript_region:SL2.40ch10:62006972..62011520- go_terms:GO:0046608 functional_description:"Carotenoid isomerase, chloroplastic" 1 5 11 19 opLeV0100000836 sgn|U214846 GCCCGTTGTTTCAGTCAAAATGAGTTCTCGAGATTCTGAGGCATTGGCTTCCGCGAATAGTGAACTGAAG Experimental SGN-U563196 Tomato 200607#2 [40 ESTs aligned] (*GB) gi|1418990|emb|CAA99760.1| (e_value=2e-132) unknown [Lycopersicon esculentum]; (*ATH) AT5G13180.1 (e_value=4e-63) Symbol: ANAC083 | no apical meristem (NAM) family protein, contains Pfam PF02365: No apical meristem (NAM) domain; hypothetical protein SENU5, senescence up-regulated - Lycopersicon esculentum, EMBL:Z75524 | chr5:4196579-4197851 FORWARD | Aliases: T... ; (*SWP) sp|O49255|NAC29_ARATH (e_value=7e-40) NAC domain-containing protein 29 OS=Arabidopsis thaliana GN=NAP; Solyc01g009860.2.1 genomic_reference:SL2.40ch01 gene_region:4382336-4384348 transcript_region:SL2.40ch01:4382336..4384348- go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 **** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein " 1 1 11 19 opLeV0100000837 sgn|U215206 TCCGTGTGATAGCGCGAAAATCAGTGCACCAAAGCTGCTGACAGAAGATGGATCTCCAGTGATTTATCAA Experimental SGN-U579904 Tomato 200607#2 [38 ESTs aligned] (*GB) gi|157353666|emb|CAO46190.1| (e_value=3e-156) unnamed; (*ATH) AT5G24530.1 (e_value=2e-140) Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavanone 3-hydroxylase (Persea americana)(GI:727410); contains PF03171 2OG-Fe(II) oxygenase superfamily domain | chr5:8378836-8383404 FORWARD | Aliases: K18P6.6, K18P6_6... ; (*SWP) sp|Q06942|FL3H_MALDO (e_value=3e-59) Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica; Solyc03g080190.2.1 genomic_reference:SL2.40ch03 gene_region:45625441-45630380 transcript_region:SL2.40ch03:45625441..45630380- go_terms:GO:0016491 functional_description:"Flavanone 3-hydroxylase-like protein (AHRD V1 **-- Q9FLV0_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase " 1 5 15 19 opLeV0100000838 sgn|U216844 ACTGGCCCAGCGGAAAACAAAGCAGCCAATGATCTTCACACTAGTGGTGGCTCATCAAGATCTGTCATGA Experimental SGN-U569983 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157340162|emb|CAO45839.1| (e_value=0) unnamed; (*ATH) AT1G52150.1 (e_value=0) Symbol: None | homeobox-leucine zipper family protein / lipid-binding START domain-containing protein, similar to to HD-zip transcription factor (athb-8) (GI:7270235) (Arabidopsis thaliana); contains Pfam profiles PF01852: START domain, PF00046: Hom... ; (*SWP) sp|Q9ZU11|ATB15_ARATH (e_value=0) Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15; Solyc03g120910.2.1 genomic_reference:SL2.40ch03 gene_region:63195847-63202781 transcript_region:SL2.40ch03:63195847..63202781+ go_terms:GO:0003700 functional_description:"Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA " 1 1 15 19 opLeV0100000839 sgn|U218504 CCAGCTACTCTTAGAGGAAATGCTGCTGCTGCTTTATTATCTCCATCCTTTTTATCCTCCACACAACAAC Experimental SGN-U596360 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157344625|emb|CAO70008.1| (e_value=8e-39) unnamed; (*ATH) AT1G29860.1 (e_value=1e-37) | Symbol: None | WRKY family transcription factor, similar to DNA-binding protein 2 GI:4322940 from (Nicotiana tabacum) | chr1:10454466-10455769 FORWARD | Aliases: F1N18.10, F1N18_10; (*SWP) sp|Q93WV4|WRK71_ARATH (e_value=1e-36) Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71; Solyc07g056280.2.1 genomic_reference:SL2.40ch07 gene_region:61460392-61463054 transcript_region:SL2.40ch07:61460392..61463054+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 16 (AHRD V1 *-*- Q7X7E3_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY " 3 5 7 19 opLeV0100000840 sgn|U221616 TTGACCACCCCTTGATAATAGATATTGGGTGTAGAAAGTGCATCATCATAAGAGTCGGGAATTGGGCCGT Experimental SGN-U575427 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157337258|emb|CAO21604.1| (e_value=2e-38) unnamed; (*ATH) AT1G07480.2 (e_value=3e-34) | Symbol: None | transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L), identical to transcription factor IIA large subunit GI:2826884 from (Arabidopsis thaliana) | chr1:2296471-2299467 REVERSE | Aliases: None; Solyc06g076390.2.1 genomic_reference:SL2.40ch06 gene_region:43843183-43849644 transcript_region:SL2.40ch06:43843183..43849644- go_terms:GO:0003700 functional_description:"Transcription initiation factor IIA subunit 1 (AHRD V1 *-** TF2AA_DICDI); contains Interpro domain(s) IPR004855 Transcription factor IIA, alpha/beta subunit " 3 5 11 19 opLeV0100000841 sgn|U216316 TATTTCCGAGGAAGTGGTAAAGCCGCGCAGATGAAGCAAGAAGCTGCTAGAGGTGCCCTTAGAGCAGCAA Experimental SGN-U590497 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115472811|ref|NP_001060004.1| (e_value=3e-21) Os07g0564600; (*ATH) AT2G20840.1 (e_value=9e-23) | Symbol: None | secretory carrier membrane protein (SCAMP) family protein, contains Pfam domain, PF04144: SCAMP family | chr2:8978843-8981551 REVERSE | Aliases: F5H14.19, F5H14_19; (*SWP) sp|A2YMP7|SCAM1_ORYSI (e_value=2e-22) Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1; Solyc02g078840.2.1 genomic_reference:SL2.40ch02 gene_region:38066920-38073383 transcript_region:SL2.40ch02:38066920..38073383+ go_terms:GO:0019904 functional_description:"Secretory carrier membrane protein (AHRD V1 ***- B3TLU6_ELAGV); contains Interpro domain(s) IPR007273 SCAMP " 3 1 11 19 opLeV0100000842 sgn|U241868 CCAAACCATACATTTGGGGGGCCTGTTTACTGGACAAATTGTTCATTTACGAGGGGATCGGGTCCAACGC Experimental SGN-U587488 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157342505|emb|CAO65217.1| (e_value=9e-33) unnamed; \N \N 3 5 15 19 opLeV0100000843 sgn|U213013 AGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCA Experimental SGN-U593614 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|20138705|sp|Q9AXQ3|IF5A4_SOLLC (e_value=2e-77) RecName:; (*ATH) AT1G13950.1 (e_value=1e-69) | Symbol: None | eukaryotic translation initiation factor 5A-1 / eIF-5A 1, identical to SP:Q9XI91 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) {Arabidopsis thaliana} | chr1:4773573-4774838 FORWARD | Aliases: F16A14.17; (*SWP) sp|Q9AXQ3|IF5A4_SOLLC (e_value=1e-78) Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum; \N \N 3 1 15 19 opLeV0100000844 sgn|U213671 TAGGTCTGGCAAGTATGCTCCTTCAGCGACAGCCAAGTTGAAGTAAAGGTCACCATTTTTGGGACATTGT Experimental SGN-U585705 Tomato 200607#2 [54 ESTs aligned] (*GB) gi|10798750|dbj|BAB16427.1| (e_value=7e-49) NtEIG-E80 [Nicotiana tabacum]; (*ATH) AT3G54040.1 (e_value=2e-37) Symbol: None | photoassimilate-responsive protein-related, contains weak similarity to mRNA inducible by sucrose and salicylic acid expressed in sugar-accumulating tobacco plants (GI:871487) (Nicotiana tabacum) | chr3:20024739-20026415 REVERSE | Ali... ; Solyc09g011800.2.1 genomic_reference:SL2.40ch09 gene_region:5086358-5087880 transcript_region:SL2.40ch09:5086358..5087880- functional_description:"PAR-1c protein (AHRD V1 ***- Q43589_TOBAC); contains Interpro domain(s) IPR009489 PAR1 " 2 6 5 19 opLeV0100000845 sgn|U214992 ACATGGAGAAGTCTGCTACGTTTAGCATCGTTGAAGGTGTTGCACCCGTCCACAACTATGGAAGGGTTGA Experimental SGN-U577362 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|195636456|gb|ACG37696.1| (e_value=8e-26) catalytic/; (*ATH) AT5G02230.1 (e_value=2e-23) | Symbol: None | haloacid dehalogenase-like hydrolase family protein, contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase | chr5:448132-450651 FORWARD | Aliases: T7H20.280, T7H20_280; (*SWP) sp|Q43512|MT2X_SOLLC (e_value=5e-24) Metallothionein-like protein type 2 OS=Solanum lycopersicum; Solyc04g058100.2.1 genomic_reference:SL2.40ch04 gene_region:54362100-54362884 transcript_region:SL2.40ch04:54362100..54362884+ go_terms:GO:0005507 functional_description:"Type 2 metallothionein (AHRD V1 ***- B3VKV5_SOLNI); contains Interpro domain(s) IPR000347 Plant metallothionein, family 15 " 2 2 5 19 opLeV0100000846 sgn|U227807 TCAATAAGGTTAGGCACAGAAGCAGCCCCCGTGGTGGGAGCTGGTGCAGCAACTCCAGCCACCAAAGGTG Experimental SGN-U563204 Tomato 200607#2 [3 ESTs aligned] Solyc01g097890.2.1 genomic_reference:SL2.40ch01 gene_region:80342215-80343929 transcript_region:SL2.40ch01:80342215..80343929- functional_description:"Os03g0370250 protein (Fragment) (AHRD V1 *--- C7J0C0_ORYSJ); contains Interpro domain(s) IPR007592 Protein of unknown function DUF573 " 2 6 9 19 opLeV0100000847 sgn|U215837 GACCTAACAATCTCAAAGTCCTCTCCTTCTTATCTTGCAAAACTGCAGTGGGATGAGGTGCAGACTGCTC Experimental SGN-U562617 Tomato 200607#2 [35 ESTs aligned] (*GB) gi|118483703|gb|ABK93745.1| (e_value=0) unknown; (*ATH) AT1G76400.1 (e_value=0) | Symbol: None | ribophorin I family protein, similar to ribophorin I (Sus scrofa) GI:9857227; contains Pfam profile PF04597: Ribophorin I | chr1:28663126-28666604 REVERSE | Aliases: F15M4.10, F15M4_10; (*SWP) sp|Q4R4T0|RPN1_MACFA (e_value=1e-77) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Macaca fascicularis GN=RPN1; Solyc04g082670.2.1 genomic_reference:SL2.40ch04 gene_region:63864900-63870443 transcript_region:SL2.40ch04:63864900..63870443+ go_terms:GO:0042802,GO:0004579 functional_description:"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 (AHRD V1 **** C0HAM9_SALSA); contains Interpro domain(s) IPR007676 Ribophorin I " 2 2 9 19 opLeV0100000848 sgn|U219672 CTGTGGTCCAGCTCCAGACGTGTCTTCTAAGTCACGTACATACAGGAACAAATCGAAACCTAACAGTCGT Experimental SGN-U584431 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|147843035|emb|CAN83309.1| (e_value=1e-142) hypothetical; (*ATH) AT1G65430.1 (e_value=3e-134) | Symbol: None | zinc finger protein-related, contains weak similarity to zinc finger proteins and a Pfam:PF01485 IBR domain | chr1:24304561-24309899 REVERSE | Aliases: T8F5.21, T8F5_21; (*SWP) sp|Q6T486|RBRA_DICDI (e_value=7e-38) Probable E3 ubiquitin-protein ligase rbrA OS=Dictyostelium discoideum GN=rbrA; \N \N 2 6 13 19 opLeV0100000849 sgn|U221205 CACTCGTTAGAATTTAGAAGCATCAACCAGGAGAGAGCATTGGCCCTTGCCATTGACACATTAGCTTTGT Experimental SGN-U572044 Tomato 200607#2 [5 ESTs aligned] \N \N 2 2 13 19 opLeV0100000850 sgn|U228897 ACTTGCAATGTATACGCGTATTCGGGTGCAATGTAGCCATAAGATCCAGCAATGACGGACATCGATTCGT Experimental SGN-U568415 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157351821|emb|CAO60856.1| (e_value=4e-96) unnamed; (*ATH) AT5G61480.1 (e_value=1e-82) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative | chr5:24741767-24745068 REVERSE | Aliases: MCI2.4, MCI2_4; (*SWP) sp|Q9LHP4|RCH2_ARATH (e_value=3e-47) Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2; Solyc05g051640.2.1 genomic_reference:SL2.40ch05 gene_region:61175509-61181215 transcript_region:SL2.40ch05:61175509..61181215+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK" 4 6 5 19 opLeV0100000851 sgn|U233866 CATTATTCCTCCTGGCCCTATGATCCTCCCCAAGCAAAAAATCCAATGGGCTGCTAAAATCATTATTAAT Experimental SGN-U588257 Tomato 200607#2 [1 ESTs aligned] Solyc11g011050.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4106566-4108390 transcript_region:SL2.40ch11:4106566..4108390+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q9SPG7_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor " 4 2 5 19 opLeV0100000852 sgn|U221515 TTTCTTTGTGAAAGTCTAGCAGGCTTCTTGGAGTAGCAAGAATTCCACTCCCCACCATCCTGAGCATAAT Experimental SGN-U565254 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|10176920|dbj|BAB10164.1| (e_value=1e-31) gb|AAF50025.1~gene_id:MTG10.5~similar to unknown protein [Arabidopsis thaliana]; (*ATH) AT5G62030.1 (e_value=1e-33) | Symbol: None | diphthamide synthesis DPH2 family protein, contains InterPro accession IPR002728: Diphthamide synthesis DPH2 protein | chr5:24935705-24938102 FORWARD | Aliases: MTG10.5, MTG10_5; (*SWP) sp|Q5ZHX9|DPH1_CHICK (e_value=4e-15) Diphthamide biosynthesis protein 1 OS=Gallus gallus GN=DPH1; Solyc06g066300.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:37979102-37980553 transcript_region:SL2.40ch06:37979102..37980553- go_terms:GO:0005515 functional_description:"Diphthamide biosynthesis protein 1 (AHRD V1 ***- B6TW72_MAIZE); contains Interpro domain(s) IPR016435 Diphthamide synthesis, DHP1 " 4 6 9 19 opLeV0100000853 X51904 GTGTGTATATTGGCGGCCATGCCCTGCCCCTTCTGTATTTTTAAAACAAGAATATTGCTTCCATGCTTGG Experimental SGN-U581493 Tomato 200607#2 [37 ESTs aligned] Solyc02g084850.2.1 genomic_reference:SL2.40ch02 gene_region:42503669-42504804 transcript_region:SL2.40ch02:42503669..42504804- go_terms:GO:0009415 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000167 Dehydrin " 4 2 9 19 opLeV0100000854 sgn|U214364 AGTTGCTCTTCTTGGCCCGCAGTTTTTTCCTTATTGAGAAGGGTTTCCAC Experimental \N \N \N \N 4 6 13 19 opLeV0100000855 sgn|U216491 CAAGTACAGATTATACTGGAACATCTACCACCATGCTGTTGGATACGCGGTAATAAGTCTGAGCATCGCG Experimental SGN-U581877 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|13785207|emb|CAC37355.1| (e_value=0) putative membrane protein [Solanum tuberosum]; (*ATH) AT5G47530.1 (e_value=1e-113) Symbol: None | auxin-responsive protein, putative, similar to auxin-induced protein AIR12 (GI:11357190) (Arabidopsis thaliana); similar to stromal cell derived factor receptor 2 (GI:20381292) (Mus musculus) | chr5:19298601-19300288 FORWARD | Aliases... ; (*SWP) sp|Q94BT2|AIR12_ARATH (e_value=3e-19) Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12; Solyc07g048070.2.1 genomic_reference:SL2.40ch07 gene_region:56576167-56578449 transcript_region:SL2.40ch07:56576167..56578449+ functional_description:"Membrane protein (AHRD V1 **-- B6U5U8_MAIZE); contains Interpro domain(s) IPR017214 Uncharacterised conserved protein UCP037471 " 4 2 13 19 opLeV0100000856 sgn|U212837 GATGATTCCCACCAAGCCCAGAAGAAGGGAAAGTAGAGTGCATTTGATGA Experimental SGN-U577204 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|77745446|gb|ABB02622.1| (e_value=4e-39) elongation factor 1-alpha-like protein [Solanum tuberosum]; (*ATH) AT5G60390.1 (e_value=3e-39) | Symbol: None | elongation factor 1-alpha / EF-1-alpha, identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) (Arabidopsis thaliana) | chr5:24305887-24308246 FORWARD | Aliases: MUF9.8; (*SWP) sp|P17786|EF1A_SOLLC (e_value=3e-40) Elongation factor 1-alpha OS=Solanum lycopersicum; \N \N 2 6 7 19 opLeV0100000857 sgn|U216481 CTAAGAAAGAGCTGGATGCTCTCCTCTCTGACGAGTCCTTGGCCACTGTGCCATTTCTTATATTGGGTAA Experimental SGN-U578379 Tomato 200607#2 [36 ESTs aligned] (*GB) gi|76573331|gb|ABA46770.1| (e_value=8e-98) small GTP-binding protein Sar1BNt-like protein [Solanum tuberosum]; (*ATH) AT4G02080.1 (e_value=5e-96) | Symbol: ATSAR2 | GTP-binding protein (SAR1A), identical to SP:O04834 GTP-binding protein SAR1A. (Arabidopsis thaliana) | chr4:921462-922776 FORWARD | Aliases: T10M13.9, T10M13_9, ATSARA1C, ATSAR2; (*SWP) sp|O04834|SAR1A_ARATH (e_value=5e-95) GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A; Solyc01g100350.2.1 genomic_reference:SL2.40ch01 gene_region:82173471-82176296 transcript_region:SL2.40ch01:82173471..82176296- go_terms:GO:0003924 functional_description:"ADP-ribosylation factor-like protein 3 (AHRD V1 **-- ARL3_CAEEL); contains Interpro domain(s) IPR006687 GTP-binding protein SAR1 " 2 2 7 19 opLeV0100000858 sgn|U225947 TTCGCGGAATTTTTTGGTGGATCGGATGGGTATAGTAGGAGTACTGGTGGTACTGTACGGATTAGGAAAG Experimental SGN-U568089 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|34811736|gb|AAQ82701.1| (e_value=1e-64) potyviral capsid protein interacting protein 1 [Nicotiana tabacum]; (*ATH) AT3G08910.1 (e_value=1e-39) | Symbol: None | DNAJ heat shock protein, putative, similar to SP:P25685 DnaJ homolog subfamily B member 1 (Heat shock 40 kDa protein 1) {Homo sapiens}; contains Pfam profile PF00226: DnaJ domain | chr3:2710160-2711898 REVERSE | Aliases: T16O11.15; (*SWP) sp|Q0III6|DNJB6_BOVIN (e_value=4e-22) DnaJ homolog subfamily B member 6 OS=Bos taurus GN=DNAJB6; Solyc04g005820.2.1 genomic_reference:SL2.40ch04 gene_region:524032-528627 transcript_region:SL2.40ch04:524032..528627- go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ 2 (AHRD V1 ***- DNAJ2_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ " 2 6 11 19 opLeV0100000859 sgn|U227318 TATTGTCACCCAAACGAGTTCTACACAGTCAACCCAAAGAAGCCTTTGTTCAACCGGAATTACACCATAT Experimental SGN-U563321 Tomato 200607#2 [47 ESTs aligned] (*GB) gi|30695366|ref|NP_564615.3| (e_value=3e-131) expressed protein [Arabidopsis thaliana]; (*ATH) AT1G52870.2 (e_value=2e-133) | Symbol: None | peroxisomal membrane protein-related, contains weak similarity to Swiss-Prot:Q07066 22 kDa peroxisomal membrane protein (Rattus norvegicus) | chr1:19689415-19691531 FORWARD | Aliases: None; (*SWP) sp|Q2KIY1|PXMP2_BOVIN (e_value=5e-15) Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2; Solyc07g063430.2.1 genomic_reference:SL2.40ch07 gene_region:63130568-63134669 transcript_region:SL2.40ch07:63130568..63134669- go_terms:GO:0016021 functional_description:"Mpv17 protein (AHRD V1 *--- B0WWR6_CULQU); contains Interpro domain(s) IPR007248 Mpv17/PMP22 " 2 2 11 19 opLeV0100000860 sgn|U213319 CGTTAAAGAAAACGCGACATTCACGTTTGGAACTAACGGAAATCTCGTATTGGCCGATGCTGACGGTCGA Experimental SGN-U569601 Tomato 200607#2 [89 ESTs aligned] (*GB) gi|34921531|sp|Q39688|EP1G_DAUCA (e_value=3e-84) Epidermis-specific secreted glycoprotein EP1 precursor (52/54-kDa medium protein); (*ATH) AT1G78830.1 (e_value=6e-71) Symbol: None | curculin-like (mannose-binding) lectin family protein, similar to S glycoprotein (Brassica rapa) GI:2351186; contains Pfam profile PF01453: Lectin (probable mannose binding) | chr1:29641848-29643445 REVERSE | Aliases: F9K20.12, F9K20_... ; (*SWP) sp|Q39688|EP1G_DAUCA (e_value=2e-85) Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1; Solyc07g062490.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:62431982-62432875 transcript_region:SL2.40ch07:62431982..62432875+ go_terms:GO:0005529 functional_description:"S-locus-specific glycoprotein (AHRD V1 **-- SLSG0_BRAOA); contains Interpro domain(s) IPR001480 Curculin-like (mannose-binding) lectin " 2 6 15 19 opLeV0100000861 sgn|U231733 TCTTCGTGGGCACTAAAATATATGTCAGGTTTGTGCCAAAAGGCAGCCCCGTTGTCAAGTGTCGCACAGC Experimental SGN-U573874 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157356341|emb|CAO62493.1| (e_value=1e-87) unnamed; (*ATH) AT1G18880.1 (e_value=8e-74) | Symbol: None | proton-dependent oligopeptide transport (POT) family protein, contains Pfam profile: PF00854 POT family | chr1:6520744-6523359 FORWARD | Aliases: F6A14.2, F6A14_2; (*SWP) sp|Q9M817|PTR2X_ARATH (e_value=1e-38) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190; Solyc06g071570.2.1 genomic_reference:SL2.40ch06 gene_region:40451690-40454562 transcript_region:SL2.40ch06:40451690..40454562+ go_terms:GO:0080054,GO:0042936 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_BOVIN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region " 2 2 15 19 opLeV0100000862 sgn|U213230 TCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGA Experimental SGN-U580182 Tomato 200607#2 [103 ESTs aligned] (*GB) gi|118481963|gb|ABK92913.1| (e_value=7e-128) unknown; (*ATH) AT3G17790.1 (e_value=4e-116) | Symbol: None | acid phosphatase type 5 (ACP5), contains Pfam profile: PF00149 calcineurin-like phosphoesterase; nearly identical to acid phosphatase type 5 (GI:10278031) (Arabidopsis thaliana) | chr3:6089628-6091999 FORWARD | Aliases: MEB5.10; (*SWP) sp|P13686|PPA5_HUMAN (e_value=3e-30) Tartrate-resistant acid phosphatase type 5 OS=Homo sapiens GN=ACP5; Solyc06g072420.2.1 genomic_reference:SL2.40ch06 gene_region:41069751-41071680 transcript_region:SL2.40ch06:41069751..41071680- go_terms:GO:0016787 functional_description:"Acid phosphatase (AHRD V1 ***- B0SVS7_CAUSK); contains Interpro domain(s) IPR004843 Metallophosphoesterase " 4 6 7 19 opLeV0100000863 sgn|U218027 CGTTTGTTTCTTCAAACCCTGATGACAACAGCCATTTTGCCGAGTTAGGCAGCCATCTTGCCAAGTCAGG Experimental SGN-U569854 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157359609|emb|CAO67826.1| (e_value=3e-72) unnamed; (*ATH) AT5G64420.1 (e_value=2e-58) | Symbol: None | DNA polymerase V family, contains Pfam domain PF04931: DNA polymerase V | chr5:25773558-25778567 FORWARD | Aliases: MSJ1.26, MSJ1_26; Solyc01g106240.2.1 genomic_reference:SL2.40ch01 gene_region:85962270-85971192 transcript_region:SL2.40ch01:85962270..85971192+ go_terms:GO:0006350 functional_description:"DNA polymerase V (AHRD V1 ***- A2Q1A6_MEDTR); contains Interpro domain(s) IPR007015 DNA polymerase V " 4 2 7 19 opLeV0100000864 sgn|U221736 GTTGTTGCTTCTTCACCTGAGAGTAGTTTGGACTCTCCTGACATTCACCCACTCCGGATGTCATCCTCAG Experimental SGN-U563714 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|157359760|emb|CAO68479.1| (e_value=0) unnamed; (*ATH) AT1G69420.1 (e_value=1e-168) | Symbol: None | zinc finger (DHHC type) family protein, contains Pfam profile: PF01529: DHHC zinc finger domain | chr1:26097001-26100570 FORWARD | Aliases: F10D13.9, F10D13_9; (*SWP) sp|Q9LIE4|Y3218_ARATH (e_value=3e-57) Zinc finger DHHC domain-containing protein At3g22180 OS=Arabidopsis thaliana GN=At3g22180; Solyc05g012790.2.1 genomic_reference:SL2.40ch05 gene_region:5958825-5964747 transcript_region:SL2.40ch05:5958825..5964747+ go_terms:GO:0005515 functional_description:"Palmitoyltransferase erf2 (AHRD V1 *-*- C5FZI1_NANOT); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type " 4 6 11 19 opLeV0100000865 sgn|U217391 AGAGGCTGCTCTTCAAGCTAGTTTATGGGGCACTGAGGATGAGAGATTTGGTGACACTGACTATTTTGAT Experimental SGN-U575082 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|157352808|emb|CAO44650.1| (e_value=8e-163) unnamed; (*ATH) AT3G04460.1 (e_value=2e-158) | Symbol: ATPEX12 | RING finger protein involved in peroxisome biogenesis. Mutants plants are embryonic lethal. | chr3:1186500-1189484 FORWARD | Aliases: T27C4.11, T27C4_11, PEX12, ATPEX12, PEROXIN-12; (*SWP) sp|Q9M841|PEX12_ARATH (e_value=3e-147) Putative peroxisome assembly protein 12 OS=Arabidopsis thaliana GN=At3g04460; Solyc05g054950.2.1 genomic_reference:SL2.40ch05 gene_region:63884549-63891458 transcript_region:SL2.40ch05:63884549..63891458+ go_terms:GO:0008022,GO:0008270 functional_description:"Peroxisome assembly protein 12 (AHRD V1 ***- C0HB20_SALSA); contains Interpro domain(s) IPR017375 Peroxisome assembly, p12 " 4 2 11 19 opLeV0100000866 sgn|U236938 ATAGTAACGTCCAATCAGCAGAGGTAACCCCTTAGCAGCCCCAACGCAGAGTTTAGGAACTCGCTCTCAC Experimental SGN-U599371 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157339812|emb|CAO44353.1| (e_value=4e-53) unnamed; (*ATH) AT4G31850.1 (e_value=6e-49) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr4:15403026-15406364 FORWARD | Aliases: F11C18.50, F11C18_50; (*SWP) sp|Q3EDF8|PPR28_ARATH (e_value=6e-20) Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900; \N \N 4 6 15 19 opLeV0100000867 sgn|U233626 ACACGTTGATCCTCCTGCATTATTTTCTGGGATTCCCTGACTAAAGAAGTTGCTAGCAGGTTCTTTGAAC Experimental SGN-U576687 Tomato 200607#2 [2 ESTs aligned] \N \N 4 2 15 19 opLeV0100000868 sgn|U235027 TGACTACTCGTATGAAGCAGGTGGCATCCATAGTAGCTGCAGATCTTCATATGTTGGGGAAATTAGCAGA Experimental SGN-U593934 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157350651|emb|CAO40742.1| (e_value=7e-34) unnamed; (*ATH) AT3G14470.1 (e_value=4e-25) | Symbol: None | disease resistance protein (NBS-LRR class), putative, domain signature NBS-LRR exists, suggestive of a disease resistance protein. | chr3:4857947-4861254 FORWARD | Aliases: MOA2.9; (*SWP) sp|Q7XA40|RGA3_SOLBU (e_value=2e-32) Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3; Solyc10g085460.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63950789-63954634 transcript_region:SL2.40ch10:63950789..63954634- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein" 2 5 5 19 opLeV0100000869 sgn|U214019 GAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGG Experimental SGN-U573154 Tomato 200607#2 [59 ESTs aligned] (*GB) gi|157353384|emb|CAO45310.1| (e_value=7e-179) unnamed; (*ATH) AT2G43180.3 (e_value=3e-158) | Symbol: None | expressed protein | chr2:17960020-17962875 REVERSE | Aliases: None; (*SWP) sp|P11435|CPPM_STRHY (e_value=1e-51) Carboxyvinyl-carboxyphosphonate phosphorylmutase OS=Streptomyces hygroscopicus GN=bcpA; Solyc05g056270.2.1 genomic_reference:SL2.40ch05 gene_region:64763836-64771346 transcript_region:SL2.40ch05:64763836..64771346+ go_terms:GO:0008152,GO:0003824 functional_description:"Isocitrate lyase (AHRD V1 *-*- Q2TWG5_ASPOR); contains Interpro domain(s) IPR000918 Isocitrate lyase and phosphorylmutase " 2 1 5 19 opLeV0100000870 sgn|U216149 GCATCTTCTGTTAGTCAGGTTATTCAGGCTGTTTGGCTCTCTACCTCGTGGAGGTTTAATAGCACTGTGG Experimental SGN-U578644 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|157339322|emb|CAO43863.1| (e_value=6e-83) unnamed; (*ATH) AT3G42790.1 (e_value=3e-79) | Symbol: None | PHD finger family protein, contains PHD-finger domain, INTERPRO:IPR001965 | chr3:14888946-14890755 REVERSE | Aliases: T21C14.10; (*SWP) sp|O81488|Y5621_ARATH (e_value=2e-77) PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210; Solyc06g062850.2.1 genomic_reference:SL2.40ch06 gene_region:36037831-36043258 transcript_region:SL2.40ch06:36037831..36043258- go_terms:GO:0003677,GO:0035064 functional_description:"PHD finger family protein (AHRD V1 **-- D7M017_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger " 2 5 9 19 opLeV0100000871 sgn|U219586 AGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGA Experimental SGN-U564989 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|3024504|sp|Q40521|RB11B_TOBAC (e_value=2e-115) Ras-related protein Rab11B; (*ATH) AT5G60860.1 (e_value=2e-107) | Symbol: None | Ras-related GTP-binding protein, putative, similar to GTP-binding protein GI:303742 from (Pisum sativum) | chr5:24501855-24502931 FORWARD | Aliases: MAE1.9, MAE1_9; (*SWP) sp|Q40521|RB11B_TOBAC (e_value=1e-116) Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B; Solyc12g014080.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4894053-4896737 transcript_region:SL2.40ch12:4894053..4896737- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related " 2 1 9 19 opLeV0100000872 sgn|U230487 TTCCACTTTGCTAAGAGAAACTAGGACTTATGTTGCTTGGACACTTCAAAGCGTGCGTGTCGGATCCTTT Experimental SGN-U572140 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|56555147|gb|AAV98199.1| (e_value=1e-35) phenylalanine ammonialyase 1 [Petunia x hybrida]; (*ATH) AT3G53260.1 (e_value=3e-34) | Symbol: None | phenylalanine ammonia-lyase 2 (PAL2), nearly identical to SP:P45724 | chr3:19755029-19757758 REVERSE | Aliases: T4D2.190; (*SWP) sp|P45724|PAL2_ARATH (e_value=2e-33) Phenylalanine ammonia-lyase 2 OS=Arabidopsis thaliana GN=PAL2; Solyc05g056170.2.1 genomic_reference:SL2.40ch05 gene_region:64706396-64710169 transcript_region:SL2.40ch05:64706396..64710169+ go_terms:GO:0004397,GO:0045548 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 **** Q50EX7_PETHY); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase " 2 5 13 19 opLeV0100000873 sgn|U233187 ATATTCATAAATCATGGGATCCTCCCCAGCCTCCTCCAGTCGCAATGGCA Experimental SGN-U588236 Tomato 200607#2 [1 ESTs aligned] \N \N 2 1 13 19 opLeV0100000874 sgn|U216131 ACAAGCGCAAGGCCTTGAAGACGGTCTCTGCTCTTCCAGGAATTGATGAA Experimental SGN-U586322 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|15223416|ref|NP_171656.1| (e_value=1e-18) heavy-metal-associated domain-containing protein [Arabidopsis thaliana]; (*ATH) AT1G01490.1 (e_value=1e-20) | Symbol: None | heavy-metal-associated domain-containing protein, contains Pfam profile PF00403: Heavy-metal-associated domain | chr1:180120-182318 REVERSE | Aliases: F22L4.5, F22L4_5; Solyc01g095070.2.1 genomic_reference:SL2.40ch01 gene_region:78197040-78199740 transcript_region:SL2.40ch01:78197040..78199740+ go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q8S5W0_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein " 4 5 5 19 opLeV0100000875 sgn|U242430 AACCACCCTCAGGCCTTTTTACAAGTCTGTATGGCCTGTATGTTCCAAGAAGTTTGTCCCAAATGGAAAA Experimental SGN-U599503 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157359389|emb|CAO67550.1| (e_value=1e-27) unnamed; (*ATH) AT1G69640.1 (e_value=2e-22) | Symbol: None | acid phosphatase, putative, similar to GI:5360721 from (Lupinus albus) | chr1:26197322-26199319 REVERSE | Aliases: F24J1.22; Solyc04g072180.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:56782034-56782498 transcript_region:SL2.40ch04:56782034..56782498- go_terms:GO:0000170,GO:0080065 functional_description:"Sphingosine hydroxylase (AHRD V1 **-* A8N9Q2_COPC7); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase " 4 1 5 19 opLeV0100000876 sgn|U212923 GCTGCAGCCTAAAAAACCTACTCATCTTTGAGTCTCTTTTCCACCTCCTCAACGCTCTGAATTTCCCTAA Experimental SGN-U577381 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|548586|sp|Q04108|PR04_SOLLC (e_value=2e-62) RecName:; (*ATH) AT2G14580.1 (e_value=1e-28) Symbol: None | pathogenesis-related protein, putative, similar to SP:P33154 Pathogenesis-related protein 1 precursor (PR-1) {Arabidopsis thaliana}; contains Pfam profile PF00188: SCP-like extracellular protein | chr2:6232617-6233306 REVERSE | Aliase... ; (*SWP) sp|Q04108|PR04_SOLLC (e_value=1e-63) Pathogenesis-related leaf protein 4 OS=Solanum lycopersicum; Solyc03g097970.2.1 genomic_reference:SL2.40ch03 gene_region:53785982-53789328 transcript_region:SL2.40ch03:53785982..53789328+ go_terms:GO:0005515 functional_description:"Erwinia induced protein 2 (AHRD V1 ***- B4FAP8_MAIZE)" 4 5 9 19 opLeV0100000877 sgn|U214772 TGCCTGGGGCTGCACCTGGAGGAATGCCCGGTAACATGGACTACAGCAAAATACTGAATGACCCTGAATT Experimental SGN-U573579 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|166407425|gb|ABY87519.1| (e_value=4e-34) Hsp70-interacting; (*ATH) AT4G22670.1 (e_value=5e-33) Symbol: None | tetratricopeptide repeat (TPR)-containing protein, similar to Hsc70-interacting protein (Hip) from {Homo sapiens} SP:P50502, {Rattus norvegicus} SP:P50503; contains Pfam profile PF00515: tetratricopeptide repeat (TPR) domain | chr4:11... ; (*SWP) sp|Q93YR3|F10AL_ARATH (e_value=4e-32) FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670; Solyc08g079260.2.1 genomic_reference:SL2.40ch08 gene_region:60032686-60038031 transcript_region:SL2.40ch08:60032686..60038031+ go_terms:GO:0030544 functional_description:"Serine/threonine-protein phosphatase (Fragment) (AHRD V1 *--- Q4RFT2_TETNG); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical " 4 1 9 19 opLeV0100000878 sgn|U234097 GTGGAAGGTTTTTCATGGAAAATGGCCCAGCCTGGGGCCTCTGGGATGTGATTTCCCCAACCTTTTGGCC Experimental SGN-U591974 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115825|sp|P07369|CB2G_SOLLC (e_value=9e-45) RecName:; (*ATH) AT1G29930.1 (e_value=8e-39) Symbol: None | chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B), identical to SP:P04778 Chlorophyll A-B binding protein 2, chloroplast precursor (LHCII type I CAB-2) (CAB-140) (LHCP) {Arabidopsis thaliana} | chr1... ; (*SWP) sp|P07369|CB2G_SOLLC (e_value=7e-46) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C; \N \N 4 5 13 19 opLeV0100000879 sgn|U214018 CAATTGGCTCCCAGGAAGACGAAGGCATCTTCTTGATGGAAGGAATGAATTCCTAAATTTTGAAAGTATA Experimental SGN-U577973 Tomato 200607#2 [30 ESTs aligned] (*GB) gi|15824574|gb|AAL09401.1|AF307336_1 (e_value=5e-83) ribosomal; (*ATH) AT1G27400.1 (e_value=4e-78) | Symbol: None | 60S ribosomal protein L17 (RPL17A), similar to GB:P51413 from (Arabidopsis thaliana); similar to ESTs gb:L33542 and gb:AA660016 | chr1:9515122-9516912 FORWARD | Aliases: F17L21.19, F17L21_19; (*SWP) sp|Q93VI3|RL171_ARATH (e_value=3e-77) 60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A; Solyc06g071870.2.1 genomic_reference:SL2.40ch06 gene_region:40668511-40671232 transcript_region:SL2.40ch06:40668511..40671232- go_terms:GO:0003735 functional_description:"60S ribosomal protein L17 (AHRD V1 ***- D7KV33_ARALY); contains Interpro domain(s) IPR005721 Ribosomal protein L22/L17, eukaryotic/archaeal " 4 1 13 19 opLeV0100000880 sgn|U215193 GGGCGCCAGGCTGAATTGTTGAACCAGATAGTGTGTGAATTGCCTCCCGAGCATCCTGTTGCCAATGTTA Experimental SGN-U563901 Tomato 200607#2 [38 ESTs aligned] (*GB) gi|157337866|emb|CAO38910.1| (e_value=1e-60) unnamed; (*ATH) AT3G21610.1 (e_value=5e-59) | Symbol: None | expressed protein, contains Pfam domain, PF02681: Uncharacterized BCR, COG1963 | chr3:7609150-7610718 REVERSE | Aliases: MIL23.18; Solyc10g006140.2.1 genomic_reference:SL2.40ch10 gene_region:871373-877188 transcript_region:SL2.40ch10:871373..877188+ functional_description:"Acid phosphatase/vanadium-dependent haloperoxidase related (AHRD V1 **-- B6SYG4_MAIZE); contains Interpro domain(s) IPR003832 Acid phosphatase/vanadium-dependent haloperoxidase related " 2 5 7 19 opLeV0100000881 sgn|U219719 AAGCTCCTTTTTCGACGAACAAATCCTCGGAGAGACATATCTGGAGCTAATATCTTCGTAATCATCCGGC Experimental SGN-U589248 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|124053384|sp|Q9FV02|SKIP3_ARATH (e_value=4e-19) F-box; (*ATH) AT2G02240.1 (e_value=2e-20) | Symbol: None | F-box family protein / SKP1 interacting partner 3-related | chr2:592358-593601 REVERSE | Aliases: T16F16.3; (*SWP) sp|Q9FV02|SKIP3_ARATH (e_value=3e-20) F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3; Solyc12g044930.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45731804-45733125 transcript_region:SL2.40ch12:45731804..45733125+ functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box " 2 1 7 19 opLeV0100000882 sgn|U241937 AATTTAGCAGTCAGCTGTGCATCTGTCATTTGCTGCCGTGTCTCTCCTAAGCAGAAGGCCTTGGTTACTA Experimental SGN-U599685 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157339988|emb|CAO45665.1| (e_value=1e-71) unnamed; (*ATH) AT1G72700.1 (e_value=9e-71) Symbol: None | haloacid dehalogenase-like hydrolase family protein, similar to Potential phospholipid-transporting ATPase (EC 3.6.3.1) from Homo sapiens (SP:Q9Y2Q0, SP:O43520); contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrol... ; (*SWP) sp|Q9LNQ4|ALA4_ARATH (e_value=3e-69) Putative phospholipid-transporting ATPase 4 OS=Arabidopsis thaliana GN=ALA4; Solyc06g062780.2.1 genomic_reference:SL2.40ch06 gene_region:35995146-36001096 transcript_region:SL2.40ch06:35995146..36001096+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** C1GDL1_PARBD); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase " 2 5 11 19 opLeV0100000883 sgn|U221338 CCAGCACCCTAGCCCCAGCCCTCCTTAGTGCATTGCTGCTCATATCAACTTCAGTCAGATGTTTGTGTCC Experimental SGN-U581945 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|156229388|emb|CAL69642.1| (e_value=0) Ran; (*ATH) AT5G19320.1 (e_value=0) | Symbol: None | RAN GTPase activating protein 2 (RanGAP2), identical to RAN GTPase activating protein 2 GI:6708468 from (Arabidopsis thaliana) | chr5:6505112-6507410 REVERSE | Aliases: None; (*SWP) sp|Q5DU56|NLRC3_MOUSE (e_value=5e-23) Protein NLRC3 OS=Mus musculus GN=Nlrc3; Solyc01g079680.2.1 genomic_reference:SL2.40ch01 gene_region:71306007-71308978 transcript_region:SL2.40ch01:71306007..71308978+ go_terms:GO:0005515,GO:0005098 functional_description:"Ran GTPase activating protein (Fragment) (AHRD V1 **-* A7M8K5_NICBE); contains Interpro domain(s) IPR003590 Leucine-rich repeat, ribonuclease inhibitor subtype " 2 1 11 19 opLeV0100000884 sgn|U231247 GGGAGGAGTGGCAAGCAATCAATAAATTACTTAGTTACCAGCCAGATGAGGAATTGGCACTGCAGCATGG Experimental SGN-U566476 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|30694236|ref|NP_849783.1| (e_value=4e-51) predicted protein [Arabidopsis thaliana]; (*ATH) AT1G48090.1 (e_value=3e-53) | Symbol: None | C2 domain-containing protein, contains Pfam profile: PF00168 C2 domain | chr1:17735679-17761639 REVERSE | Aliases: F21D18.22; Solyc09g009350.2.1 genomic_reference:SL2.40ch09 gene_region:2732772-2762828 transcript_region:SL2.40ch09:2732772..2762828+ functional_description:"Vacuolar sorting-associated protein (AHRD V1 ***- C0NJR3_AJECG)" 2 5 15 19 opLeV0100000885 sgn|U213401 GGGTTTACGGAGAAAATGGGTATTTTGTTGATTCGTTGGGCAAAGTATGGGCCTTTTGATATGATTCGTT Experimental SGN-U579411 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|118430834|gb|AAQ67414.2| (e_value=4e-68) mitochondrial; (*ATH) AT1G32470.1 (e_value=5e-65) Symbol: None | glycine cleavage system H protein, mitochondrial, putative, similar to SP:P25855 Glycine cleavage system H protein 1, mitochondrial precursor {Arabidopsis thaliana}; contains Pfam profile PF01597: Glycine cleavage H-protein | chr1:117... ; (*SWP) sp|P49359|GCSH_FLAPR (e_value=8e-67) Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH; \N \N 2 1 15 19 opLeV0100000886 sgn|U240778 GGAAATTTGGGACCCTTACTTTTCCCCCATAGGACAAGGTAAAGTCCAACAACAATCACAACAGCCCCGA Experimental SGN-U600908 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|153805698|gb|ABS52574.1| (e_value=8e-11) nodulin; (*ATH) AT2G39510.1 (e_value=9e-13) | Symbol: None | nodulin MtN21 family protein, similar to MtN21 GI:2598575 (root nodule development) from (Medicago truncatula) | chr2:16498221-16500210 REVERSE | Aliases: F12L6.17, F12L6_17; Solyc09g010360.2.1 genomic_reference:SL2.40ch09 gene_region:3740101-3743295 transcript_region:SL2.40ch09:3740101..3743295- go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9ZUS1_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane " 4 5 7 19 opLeV0100000887 sgn|U220352 ATGGGACTATCAAAGAAGGGCGATTACAATTAGTGTACCGCTGATATTATTTCATGTTTCCAGTGCAAGC Experimental SGN-U593639 Tomato 200607#2 [1 ESTs aligned] Solyc11g071450.1.1 evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:52000922-52001171 transcript_region:SL2.40ch11:52000922..52001171+ functional_description:"Unknown Protein (AHRD V1)" 4 1 7 19 opLeV0100000888 sgn|U226990 TAGGTAGACAGACACTTGTGTCACGGACTAAGAGTCTCACTGATATCTCATGCGCGGGACTCTGACAGTT Experimental SGN-U566119 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|157358596|emb|CAO66272.1| (e_value=2e-104) unnamed; (*ATH) AT1G20830.1 (e_value=3e-88) | Symbol: None | expressed protein | chr1:7242909-7244893 FORWARD | Aliases: F2D10.35, F2D10_35; Solyc08g042080.2.1 genomic_reference:SL2.40ch08 gene_region:29022159-29030975 transcript_region:SL2.40ch08:29022159..29030975- functional_description:"Unknown Protein (AHRD V1)" 4 5 11 19 opLeV0100000889 sgn|U215382 CCAAGCCCCATTCACAGCCTACTATAGAAACTACATGGCCCAAAGCTTTAGCCCATCACAATTTTCTGAT Experimental SGN-U580011 Tomato 200607#2 [29 ESTs aligned] (*GB) gi|91107165|gb|ABE11608.1| (e_value=8e-163) xyloglucan; (*ATH) AT3G23730.1 (e_value=2e-121) Symbol: None | xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative, similar to xyloglucan endotransglycosylase-related protein GI:1244760 from (Arabidopsis thaliana) | chr... ; (*SWP) sp|P35694|BRU1_SOYBN (e_value=2e-127) Brassinosteroid-regulated protein BRU1 OS=Glycine max; Solyc09g092520.2.1 genomic_reference:SL2.40ch09 gene_region:66925770-66927844 transcript_region:SL2.40ch09:66925770..66927844- go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 8 (AHRD V1 **** C0IRG7_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase " 4 1 11 19 opLeV0100000890 sgn|U222509 CCCTCTGTGATAAGTGCGGGGAGGTTTTTCTTGGCTGAGATCAGGAGCATGGGCTTATGATCTAAGTGAG Experimental SGN-U568223 Tomato 200607#2 [10 ESTs aligned] (*ATH) AT2G30470.1 (e_value=1e-11) Symbol: HSI2 | HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet ... ; \N \N 4 5 15 19 opLeV0100000891 sgn|U225424 GGTTTAAGAATCTCCGGCGTTAAATGATTCGGTCCACGGCTTGAGAACGCCGCCACACGCGGCGCCGCTG Experimental SGN-U583388 Tomato 200607#2 [60 ESTs aligned] (*GB) gi|157339930|emb|CAO45607.1| (e_value=0) unnamed; (*ATH) AT3G14067.1 (e_value=0) | Symbol: None | subtilase family protein, contains similarity to cucumisin-like serine protease GI:3176874 from (Arabidopsis thaliana) | chr3:4658428-4660761 REVERSE | Aliases: MAG2.15; (*SWP) sp|O65351|SUBL_ARATH (e_value=0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12; Solyc06g062950.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36119748-36122078 transcript_region:SL2.40ch06:36119748..36122078- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related " 4 1 15 19 opLeV0100000892 sgn|U231531 GCCACCTACTTTAAAATTATGAAAGATGCTTCTCTAGAGCCAGATGCCGTGACCTATCGCACTCTTTTGT Experimental SGN-U562619 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157336593|emb|CAO71278.1| (e_value=1e-77) unnamed; (*ATH) AT3G23020.1 (e_value=3e-72) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, low similarity to leaf protein (Ipomoea nil) GI:3107905; contains Pfam profile PF01535: PPR repeat | chr3:8177222-8179750 REVERSE | Aliases: MXC7.5; (*SWP) sp|Q9C9U0|PP118_ARATH (e_value=4e-40) Pentatricopeptide repeat-containing protein At1g73710 OS=Arabidopsis thaliana GN=At1g73710; Solyc09g083110.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64190886-64193786 transcript_region:SL2.40ch09:64190886..64193786- go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L2I5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat " 1 2 6 19 opLeV0100000893 sgn|U226845 TTTGGAGCATATGTGTGGCTAGGAGGAGCATCTGGGGATGCTATCCACCACATAAGCCCGCTGGTAACAG Experimental SGN-U574318 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157336816|emb|CAO71501.1| (e_value=7e-28) unnamed; (*ATH) AT2G03880.1 (e_value=2e-18) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains INTERPRO:IPR002885 PPR repeats | chr2:1181534-1183700 FORWARD | Aliases: T18C20.8, T18C20_8; (*SWP) sp|Q9LN01|PPR21_ARATH (e_value=9e-17) Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12; \N \N 1 6 10 19 opLeV0100000894 sgn|U234155 TGTGCAATTTTATTTGTGGGGGTACCAGTTGGGGGTGCGAGTGGTCATGTAAGTACAAGTGCGCCACAAG Experimental SGN-U594348 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157336868|emb|CAO71553.1| (e_value=3e-42) unnamed; (*ATH) AT4G13580.1 (e_value=1e-43) | Symbol: None | disease resistance-responsive family protein, contains similarity to pathogenesis-related protein (Pisum sativum) gi:4585273:gb:AAD25355 | chr4:7900370-7901262 FORWARD | Aliases: T6G15.130, T6G15_130; \N \N 1 2 10 19 opLeV0100000895 sgn|U223127 TTATTTTTGCCTTGTCGTTGTCTTGCCCAGTGCTGTGCTGCAGGTTCCTCAAAGCCAGTAGCGAATCGGT Experimental SGN-U569770 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157339778|emb|CAO44319.1| (e_value=2e-73) unnamed; (*ATH) AT4G32070.1 (e_value=5e-64) Symbol: None | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein, similar to SP:Q99614 Tetratricopeptide repeat protein 1 {Homo sapiens}; contains Pfam profiles PF00564: PB1 domain, PF0051... ; \N \N 1 6 14 19 opLeV0100000896 sgn|U230388 AGACATGTTAAAAAGAGGTAAAATCGCGGGTAAGGCGATAAGCAATCTTATGTTACATCCTCCACATTGT Experimental SGN-U563910 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157342747|emb|CAO65459.1| (e_value=2e-43) unnamed; (*ATH) AT1G52140.1 (e_value=7e-27) | Symbol: None | expressed protein | chr1:19411033-19411923 REVERSE | Aliases: F5F19.20, F5F19_20; Solyc12g008380.1.1 evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:1810753-1811406 transcript_region:SL2.40ch12:1810753..1811406+ functional_description:"Avr9/Cf-9 rapidly elicited protein 146 (AHRD V1 **-- Q9FQZ6_TOBAC)" 1 2 14 19 opLeV0100000897 sgn|U230504 GTAAGAATCAAGACCCCACCCCGCACCCCACAAAGGGAAGGGAGTCAACTGTACATCTCAACGATTAGGA Experimental SGN-U574761 Tomato 200607#2 [2 ESTs aligned] Solyc07g064710.2.1 genomic_reference:SL2.40ch07 gene_region:63967340-63971297 transcript_region:SL2.40ch07:63967340..63971297+ go_terms:GO:0009245 functional_description:"Tetraacyldisaccharide 4&apos-kinase family protein (AHRD V1 ***- D7LB04_ARALY); contains Interpro domain(s) IPR003758 Tetraacyldisaccharide-1-P 4'-kinase " 3 6 6 19 opLeV0100000898 sgn|U235019 TGTGTGTAGCTTGATGTAGATTTGGTCAACAAGTTCAGTGGTACCCTAAGAATCCCCTGTTCTCTAACAA Experimental SGN-U587135 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|10798650|emb|CAC12825.1| (e_value=5e-18) amino acid permease [Nicotiana tabacum]; (*ATH) AT5G40780.2 (e_value=5e-15) Symbol: None | lysine and histidine specific transporter, putative, strong similarity to lysine and histidine specific transporter GI:2576361 from (Arabidopsis thaliana); contains Pfam profile PF01490: Transmembrane amino acid transporter protein | ... ; \N \N 3 2 6 19 opLeV0100000899 sgn|U223719 TGAATACAGATCCTTGGTATTCAGCCTATCATTATTCTCACCCTCCCCTCGTTGAAAGATTGGCTGCCAT Experimental SGN-U578791 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157349804|emb|CAO39660.1| (e_value=0) unnamed; (*ATH) AT4G01320.1 (e_value=0) | Symbol: None | CAAX protease, putative (STE24), contains Pfam domain, PF01435: Peptidase family M48 | chr4:545796-549261 FORWARD | Aliases: F2N1.21, F2N1_21; (*SWP) sp|O75844|FACE1_HUMAN (e_value=5e-96) CAAX prenyl protease 1 homolog OS=Homo sapiens GN=ZMPSTE24; Solyc01g094930.2.1 genomic_reference:SL2.40ch01 gene_region:78090601-78100660 transcript_region:SL2.40ch01:78090601..78100660+ go_terms:GO:0016020 functional_description:"CAAX prenyl protease 1 (AHRD V1 ***- B4FBL0_MAIZE); contains Interpro domain(s) IPR001915 Peptidase M48, Ste24p " 3 6 10 19 opLeV0100000900 sgn|U227014 AGACACATGACACACGTATATTGCCCCTATTCAAGTTTCGAATCAATCAAACCGGACGATCCCGTCACTC Experimental SGN-U570765 Tomato 200607#2 [5 ESTs aligned] (*ATH) AT1G15240.1 (e_value=1e-12) | Symbol: None | phox (PX) domain-containing protein, weak similarity to SP:Q9Y5W8 Sorting nexin 13 {Homo sapiens}; contains Pfam profiles PF00787: PX domain, PF02194: PXA domain | chr1:5243445-5246666 FORWARD | Aliases: F9L1.19, F9L1_19; \N \N 3 2 10 19 opLeV0100000901 sgn|U240906 AACCTCGGATAACTCGGTTTTAACCTTGTCCATTGCCTCTGGATTGCACAGTAGCTCTGTCATCGCCCAT Experimental SGN-U572772 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|27529726|dbj|BAC53892.1| (e_value=2e-85) cytochrome P450 [Petunia x hybrida]; (*ATH) AT2G45560.1 (e_value=9e-59) | Symbol: None | cytochrome P450 family protein | chr2:18783126-18785584 REVERSE | Aliases: F17K2.9; (*SWP) sp|P37121|C76A1_SOLME (e_value=5e-81) Cytochrome P450 76A1 (Fragment) OS=Solanum melongena GN=CYP76A1; Solyc10g085500.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63978572-63980682 transcript_region:SL2.40ch10:63978572..63980682+ go_terms:GO:0019825 functional_description:"Cytochrome P450" 3 6 14 19 opLeV0100000902 sgn|U218412 ACAGCGAGTGATTCTATGTTTACAAGCAGCAATTGAGCGAAGAGCATCTGAGGGAGTGAGGCTGGAGTTA Experimental SGN-U570745 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|147794108|emb|CAN62364.1| (e_value=0) hypothetical; (*ATH) AT1G12420.1 (e_value=3e-162) | Symbol: None | ACT domain-containing protein (ACR8), contains Pfam ACT domain PF01842 | chr1:4226360-4229126 REVERSE | Aliases: F5O11.14, F5O11_14; Solyc08g079650.2.1 genomic_reference:SL2.40ch08 gene_region:60298413-60301319 transcript_region:SL2.40ch08:60298413..60301319- go_terms:GO:0008152 functional_description:"ACT domain containing protein expressed (AHRD V1 **-- Q10P43_ORYSJ); contains Interpro domain(s) IPR002912 Amino acid-binding ACT " 3 2 14 19 opLeV0100000903 sgn|U222307 TCTCTCTTCCGCAACACACTTAGCTCGCTACCTTTCCTCGAATTCTCTGTTTCAGACACTACCTACCCTT Experimental SGN-U574567 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157351481|emb|CAO41706.1| (e_value=5e-54) unnamed; (*ATH) AT1G78930.1 (e_value=1e-47) | Symbol: None | mitochondrial transcription termination factor-related / mTERF-related, contains Pfam profile PF02536: mTERF | chr1:29682994-29685650 REVERSE | Aliases: YUP8H12R.46, YUP8H12R_46; Solyc03g124040.2.1 genomic_reference:SL2.40ch03 gene_region:64802905-64811982 transcript_region:SL2.40ch03:64802905..64811982- functional_description:"Mitochondrial transcription termination factor (Fragment) (AHRD V1 *--- C6FB10_PSEMZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related " 1 6 8 19 opLeV0100000904 sgn|U227173 GGTTTTTGGCCCTTAGCTTGGTGATTGTTGCTGTCTGGTTTACACGTAGGCGAAAGAAAAGAGAGAGTGC Experimental SGN-U583629 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157341364|emb|CAO49271.1| (e_value=2e-39) unnamed; (*ATH) AT5G38560.1 (e_value=2e-28) | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr5:15456479-15460394 FORWARD | Aliases: MBB18.10, MBB18_10; \N \N 1 2 8 19 opLeV0100000905 sgn|U232525 ATTAAGGTTGGAAAAATTCAAATTTTGGAGGGAAAAAAAGCCAAAATTTCTTCCCCGGAGGGGGACCCCC Experimental SGN-U592086 Tomato 200607#2 [1 ESTs aligned] \N \N 1 6 12 19 opLeV0100000906 sgn|U213926 TGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATC Experimental SGN-U591875 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157342232|emb|CAO64345.1| (e_value=1e-53) unnamed; (*ATH) AT3G47990.1 (e_value=3e-52) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr3:17724129-17727293 REVERSE | Aliases: T17F15.140; \N \N 1 2 12 19 opLeV0100000907 sgn|U215158 GTTCCCTCCACAGGGGTTTTAGTGCATGATTGGCATGTAATGCGAAATATGCACGCCTAGATGCTACCAA Experimental SGN-U592395 Tomato 200607#2 [1 ESTs aligned] Solyc08g065610.2.1 genomic_reference:SL2.40ch08 gene_region:50956613-50962513 transcript_region:SL2.40ch08:50956613..50962513- go_terms:GO:0004197 functional_description:"Vacuolar processing enzyme-1b (AHRD V1 **-- Q852T2_TOBAC); contains Interpro domain(s) IPR001096 Peptidase C13, legumain " 1 6 16 19 opLeV0100000908 sgn|U241975 ATTCATTTTCTTTATTGCTAGTGAGGCTGACTCAGGGGTAAAGGTTTGAGCCTTTGTGGCTCAAACATAG Experimental SGN-U598072 Tomato 200607#2 [1 ESTs aligned] \N \N 1 2 16 19 opLeV0100000909 sgn|U224071 CTTTGCAAACTCCATCACCAAATCACCCTGCCCAGCTTGTGTTTTGATTAACATATCTCTTGTACCCGAA Experimental SGN-U569695 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|9755374|gb|AAF98181.1|AC000107_4 (e_value=2e-46) F17F8.5; (*ATH) AT5G52065.1 (e_value=6e-18) | Symbol: None | hypothetical protein | chr5:21174538-21175805 REVERSE | Aliases: None; \N \N 3 6 8 19 opLeV0100000910 sgn|U231795 AATCAGACTCTACTACCTGTGCGCGTCAATCGACTATCTAACGCTGTGTCATGTTGTTTGCAGGTATTGT Experimental SGN-U567449 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|79479039|ref|NP_193764.3| (e_value=3e-19) metalloendopeptidase; (*ATH) AT4G20310.1 (e_value=2e-21) Symbol: None | similar to PREDICTED: similar to Membrane-bound transcription factor site 2 protease (S2P endopeptidase) (Site-2 protease) (Sterol-regulatory element-binding proteins intramembrane protease) [Gallus gallus] (GB:XP_425566.1); similar t... ; Solyc01g049910.2.1 genomic_reference:SL2.40ch01 gene_region:42191012-42191243 transcript_region:SL2.40ch01:42191012..42191243- functional_description:"Unknown Protein (AHRD V1)" 3 2 8 19 opLeV0100000911 sgn|U215188 GTACTTGGCCTGAGGCAACAAGCTGATACTGACTTGTCTTGGCACTGGATGGAAGTGAGTAGAGCTGGAT Experimental SGN-U580054 Tomato 200607#2 [28 ESTs aligned] (*GB) gi|34481799|emb|CAC87835.1| (e_value=0) cullin 1A [Nicotiana tabacum]; (*ATH) AT4G02570.2 (e_value=0) Symbol: None | similar to cullin family protein [Arabidopsis thaliana] (TAIR:At1g02980.1); similar to CUL1 [Oryza sativa (japonica cultivar-group)] (GB:AAQ01196.1); similar to cullin 1A [Nicotiana tabacum] (GB:CAC87835.1); similar to Putative cullin... ; (*SWP) sp|Q94AH6|CUL1_ARATH (e_value=0) Cullin-1 OS=Arabidopsis thaliana GN=CUL1; Solyc06g084520.2.1 genomic_reference:SL2.40ch06 gene_region:45890280-45896870 transcript_region:SL2.40ch06:45890280..45896870- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase Cullin 4 (AHRD V1 **** D8RM97_SELML); contains Interpro domain(s) IPR001373 Cullin, N-terminal " 3 6 12 19 opLeV0100000912 sgn|U216229 CGTGTACCAGCAGCACCTACACTCCTTGGTAAAGGATTGTGTTGTTGCAT Experimental \N \N \N \N 3 6 16 19 opLeV0100000913 sgn|U236037 CCATTTCGACTTTTTGTTCTGTCTACCATCCCGAGTTACAACATCTACAGTGGGCGGTAATGCACCAGCA Experimental SGN-U568156 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|49333396|gb|AAT64035.1| (e_value=6e-51) predicted; (*ATH) AT1G29220.1 (e_value=3e-49) | Symbol: None | transcriptional regulator family protein, similar to Transcriptional regulator protein HCNGP (Swiss-Prot:Q02614) (Mus musculus) | chr1:10210506-10212679 REVERSE | Aliases: F28N24.10, F28N24_10; (*SWP) sp|Q9UHR5|S30BP_HUMAN (e_value=5e-12) SAP30-binding protein OS=Homo sapiens GN=SAP30BP; Solyc02g072510.2.1 genomic_reference:SL2.40ch02 gene_region:36268726-36276453 transcript_region:SL2.40ch02:36268726..36276453- functional_description:"SAP30 binding protein (AHRD V1 *--- Q7ZUQ6_DANRE); contains Interpro domain(s) IPR012479 HCNGP-like " 3 2 16 19 opLeV0100000914 sgn|U217163 AAACGAGCTGACCAGTTGGACTATGTTCTCGTGGACACTCCTGGACAGATTGAGATATTCACTTGGTCTG Experimental SGN-U572310 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|147818685|emb|CAN71805.1| (e_value=3e-129) hypothetical; (*ATH) AT4G21800.1 (e_value=7e-125) | Symbol: None | ATP-binding family protein, contains Pfam domain, PF03029: Conserved hypothetical ATP binding protein | chr4:11572802-11575504 FORWARD | Aliases: F17L22.260, F17L22_260; (*SWP) sp|Q54C25|GPN1_DICDI (e_value=1e-93) GPN-loop GTPase 1 homolog OS=Dictyostelium discoideum GN=xab1; Solyc08g081330.2.1 genomic_reference:SL2.40ch08 gene_region:61560558-61563359 transcript_region:SL2.40ch08:61560558..61563359+ go_terms:GO:0005515 functional_description:"GPN-loop GTPase 1 (AHRD V1 **-- Q4VAB2_MOUSE); contains Interpro domain(s) IPR004130 Protein of unknown function, ATP binding " 1 5 6 19 opLeV0100000915 sgn|U218275 GTTGTGTTCTCTTATTTGCTGGTTCGTGTTCGAGTGTGAGTTGGACCACGGATCCGTGATGACTATAGCC Experimental SGN-U594316 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|6358509|gb|AAF07221.1|AF072519_1 (e_value=5e-45) centrin; (*ATH) AT3G50360.1 (e_value=1e-39) | Symbol: ATCEN2 | caltractin / centrin, identical to caltractin; centrin GI:3688162 from (Arabidopsis thaliana) | chr3:18685337-18686693 FORWARD | Aliases: F11C1.200, ATCEN2; (*SWP) sp|P41210|CATR_ATRNU (e_value=6e-40) Caltractin OS=Atriplex nummularia; Solyc04g026350.2.1 genomic_reference:SL2.40ch04 gene_region:26595840-26604419 transcript_region:SL2.40ch04:26595840..26604419+ go_terms:GO:0031683 functional_description:"Calmodulin (AHRD V1 ***- B0WM51_CULQU); contains Interpro domain(s) IPR011992 EF-Hand type " 1 1 6 19 opLeV0100000916 sgn|U218246 GGCTAGGGGTGAAGTTGGAGTGTACCATGGTGCCATGAGCTATTTATTACAAGACGAGGAAGGCCAAATA Experimental SGN-U585350 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157360455|emb|CAO69678.1| (e_value=2e-109) unnamed; (*ATH) AT5G28237.1 (e_value=8e-102) Symbol: None | tryptophan synthase, beta subunit, putative, similar to SP:P14671 Tryptophan synthase beta chain 1, chloroplast precursor (EC 4.2.1.20) {Arabidopsis thaliana}; contains Pfam profile PF00291: Pyridoxal-phosphate dependent enzyme | chr5... ; (*SWP) sp|O50046|TRPB_CAMAC (e_value=1e-94) Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB; Solyc10g005320.2.1 genomic_reference:SL2.40ch10 gene_region:234474-236768 transcript_region:SL2.40ch10:234474..236768+ go_terms:GO:0004834 functional_description:"Tryptophan synthase beta chain 1 (AHRD V1 **** Q0WUI8_ARATH); contains Interpro domain(s) IPR006654 Tryptophan synthase, beta chain " 1 5 10 19 opLeV0100000917 sgn|U219144 GATGGGCCAGAATTGTTCAAGCCTGAAGATGGATTACCCTCAGCAAGATTTTTCCCTAAGGGGGTTGTTC Experimental SGN-U569100 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|147770641|emb|CAN73407.1| (e_value=1e-62) hypothetical; (*ATH) AT2G37920.1 (e_value=9e-63) | Symbol: EMB1513 | expressed protein | chr2:15876187-15877149 REVERSE | Aliases: T8P21.17, T8P21_17, EMB1513, EMBRYO DEFECTIVE 1513; (*SWP) sp|O80792|RH33_ARATH (e_value=2e-19) Putative DEAD-box ATP-dependent RNA helicase 33 OS=Arabidopsis thaliana GN=RH33; Solyc09g011410.2.1 genomic_reference:SL2.40ch09 gene_region:4748484-4750762 transcript_region:SL2.40ch09:4748484..4750762- go_terms:GO:0006306 functional_description:"Plastid RNA-binding protein 1 (AHRD V1 ***- D9J062_NICBE)" 1 1 10 19 opLeV0100000918 sgn|U223961 GCCCCAAGCAATGTTCATGGCATAATCATCAACTTATGATATCCCAAGGAGCAAAGTTATACATACTTCT Experimental SGN-U584356 Tomato 200607#2 [4 ESTs aligned] \N \N 1 5 14 19 opLeV0100000919 sgn|U214217 CCAATGCAGCACAAAATGCTAGCCCAAATATGGCACAGAAGAGGGGTAAATCAGGTTCAGCAAGTGGAAG Experimental SGN-U579691 Tomato 200607#2 [74 ESTs aligned] (*GB) gi|8131846|gb|AAF73104.1|AF147783_1 (e_value=0) whitefly-induced; (*ATH) AT5G47910.1 (e_value=0) | Symbol: None | respiratory burst oxidase protein D (RbohD) / NADPH oxidase, identical to respiratory burst oxidase protein D from Arabidopsis thaliana (gi:3242789) | chr5:19414669-19419287 FORWARD | Aliases: MCA23.25, MCA23_25; (*SWP) sp|Q2HXL0|RBOHC_SOLTU (e_value=0) Respiratory burst oxidase homolog protein C OS=Solanum tuberosum GN=RBOHC; Solyc03g117980.2.1 genomic_reference:SL2.40ch03 gene_region:61025937-61031702 transcript_region:SL2.40ch03:61025937..61031702+ go_terms:GO:0016174 functional_description:"Respiratory burst oxidase-like protein (AHRD V1 **** C1IHQ9_9ROSI); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding " 1 1 14 19 opLeV0100000920 sgn|U217214 TACTAGTGCATCAGCGAAGAGCGCCAGAAGAGGCACGAGGATTTGTCCTTCATATAGCAAGAGGAGTCCA Experimental SGN-U568043 Tomato 200607#2 [7 ESTs aligned] \N \N 3 5 6 19 opLeV0100000921 sgn|U232115 TGTATTAGCGAATAACTTGTCCGGATCATCCACGGCAGGGGCGTCTAAGCACAGCTCGCTCATGACTGAC Experimental SGN-U591533 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147767730|emb|CAN71853.1| (e_value=7e-12) hypothetical; (*ATH) AT4G24860.1 (e_value=2e-11) | Symbol: None | AAA-type ATPase family protein, contains Pfam profile PF00004: ATPase, AAA family | chr4:12801559-12808200 REVERSE | Aliases: F6I7.70, F6I7_70; Solyc06g071990.2.1 genomic_reference:SL2.40ch06 gene_region:40742300-40744520 transcript_region:SL2.40ch06:40742300..40744520+ functional_description:"AAA-type ATPase family protein (AHRD V1 *-*- D7MGM1_ARALY)" 3 1 6 19 opLeV0100000922 sgn|U233653 AAGGGCAAGCACCGTACTGAGGAAGAATACCGGCAGCTCGGTCGAGCTGC Experimental SGN-U565624 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147799198|emb|CAN65776.1| (e_value=2e-24) hypothetical; (*ATH) AT3G53140.1 (e_value=6e-26) | Symbol: None | O-diphenol-O-methyl transferase, putative, similar to GI:6688808 (Medicago sativa subsp. x varia), caffeic acid O-methyltransferase (homt1), Populus kitakamiensis, EMBL:PKHOMT1A | chr3:19706621-19708520 FORWARD | Aliases: T4D2.70; Solyc10g085830.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64223677-64226056 transcript_region:SL2.40ch10:64223677..64226056+ go_terms:GO:0008171 functional_description:"O-methyltransferase 1 (AHRD V1 ***- D7MTQ7_ARALY); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota " 3 5 10 19 opLeV0100000923 sgn|U218482 AGAGATGGAGCGCTGCGATCGGAAATCTATCGGAGATGACGTCCAATCTGAACTCACTCCAAAAGCTACT Experimental SGN-U594429 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157355851|emb|CAO49698.1| (e_value=6e-17) unnamed; (*ATH) AT5G64180.1 (e_value=3e-14) | Symbol: None | expressed protein | chr5:25694306-25695518 FORWARD | Aliases: MSJ1.2, MSJ1_2; Solyc01g105130.2.1 genomic_reference:SL2.40ch01 gene_region:85162028-85165518 transcript_region:SL2.40ch01:85162028..85165518+ functional_description:"SKIP interacting protein 15 (AHRD V1 ***- B8Q8A1_ORYSI)" 3 1 10 19 opLeV0100000924 sgn|U223238 TGCATTGTTGTGATGGAGATAGATTCAGTCACTCAGACGCATATATGTCAGCCTTCTTCTCGTTCAACTG Experimental SGN-U566886 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157358550|emb|CAO66226.1| (e_value=4e-16) unnamed; (*ATH) AT1G20560.1 (e_value=1e-14) Symbol: None | AMP-dependent synthetase and ligase family protein, similar to AMP-binding protein GI:1903034 from (Brassica napus); contains Pfam AMP-binding domain PF00501; identical to adenosine monophosphate binding protein 1 AMPBP1 (AMPBP1) GI:2... ; \N \N 3 5 14 19 opLeV0100000925 sgn|U217118 GTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCC Experimental SGN-U569579 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|27529728|dbj|BAC53893.1| (e_value=1e-85) cytochrome P450 [Petunia x hybrida]; (*ATH) AT2G45580.1 (e_value=2e-33) | Symbol: None | cytochrome P450 family protein, contains Pfam profile: PF00067 cytochrome p450 | chr2:18789400-18791417 REVERSE | Aliases: F17K2.11; (*SWP) sp|O23976|C76B1_HELTU (e_value=6e-51) 7-ethoxycoumarin O-deethylase OS=Helianthus tuberosus GN=CYP76B1; Solyc09g098030.2.1 genomic_reference:SL2.40ch09 gene_region:67217201-67219299 transcript_region:SL2.40ch09:67217201..67219299+ go_terms:GO:0019825 functional_description:"Cytochrome P450" 3 1 14 19 opLeV0100000926 sgn|U214933 CCTCAGCTGGAGAAATTCCTTATCGTCGACTACAAACCACAGTAACTCAGTCCCTAAACTGAATTCTCAA Experimental SGN-U578281 Tomato 200607#2 [33 ESTs aligned] (*GB) gi|157353071|emb|CAO44961.1| (e_value=1e-40) unnamed; (*ATH) AT3G17210.1 (e_value=6e-40) Symbol: None | stable protein 1-related, similar to stable protein 1 (GI:13445204) (Populus tremula) PMID:12376651; similar to pop3 peptide GB:AAC26526 from (Populus balsamifera subsp. trichocarpa X Populus deltoides) | chr3:5882290-5883206 FORWARD ... ; (*SWP) sp|Q9LUV2|POP3_ARATH (e_value=5e-39) Putative protein Pop3 OS=Arabidopsis thaliana GN=At3g17210; Solyc05g053310.2.1 genomic_reference:SL2.40ch05 gene_region:62578841-62580666 transcript_region:SL2.40ch05:62578841..62580666- functional_description:"Stress responsive A/B barrel domain family protein (AHRD V1 ***- D7HD13_VIBCH); contains Interpro domain(s) IPR013097 Stress responsive alpha-beta barrel " 1 5 8 19 opLeV0100000927 sgn|U215265 GGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTG Experimental SGN-U588233 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147779655|emb|CAN67215.1| (e_value=3e-29) hypothetical; (*ATH) AT5G62810.1 (e_value=1e-20) Symbol: None | peroxisomal protein (PEX14), identical to PEX14 (Arabidopsis thaliana) GI:11094252; contains Pfam profile PF04695: Peroxisomal membrane anchor protein (Pex14p) conserved region; supporting cDNA gi:11094253:dbj:AB037539.1: | chr5:25237... ; Solyc06g071470.2.1 genomic_reference:SL2.40ch06 gene_region:40360357-40367087 transcript_region:SL2.40ch06:40360357..40367087+ go_terms:GO:0008565,GO:0005515 functional_description:"Peroxisomal membrane protein PEX14 (AHRD V1 *-*- PEX14_CRILO); contains Interpro domain(s) IPR006785 Peroxisome membrane anchor protein Pex14p, N-terminal " 1 1 8 19 opLeV0100000928 sgn|U214398 TTGTGATTTATGTGTTAAAGGCCGATATACTAACGGTGTTCATCTGCTTTTCGAATGAAGGGAGGAATTC Experimental SGN-U580763 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|2894109|emb|CAA05365.1| (e_value=1e-11) high mobility group protein [Solanum tuberosum]; \N \N 1 5 12 19 opLeV0100000929 sgn|U223947 CTTGTCATTTTTCGTCCTACAATTGTTACTAGTACTCTCCGAGACCCTTTCCCAGGTTGGGTTGAAGGCA Experimental SGN-U572545 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157328609|emb|CAO22305.1| (e_value=8e-155) unnamed; (*ATH) AT5G22500.1 (e_value=1e-131) Symbol: None | acyl CoA reductase, putative / male-sterility protein, putative, similar to acyl CoA reductase (Simmondsia chinensis) GI:5020215; contains Pfam profile PF03015: Male sterility protein; identical to cDNA male sterility 2-like protein G... ; (*SWP) sp|Q08891|MS2_ARATH (e_value=1e-90) Male sterility protein 2 OS=Arabidopsis thaliana GN=MS2; Solyc06g074390.2.1 genomic_reference:SL2.40ch06 gene_region:42405732-42410059 transcript_region:SL2.40ch06:42405732..42410059+ go_terms:GO:0016627,GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **** Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding " 1 1 12 19 opLeV0100000930 sgn|U219862 GACGAAGTAGTCCAACTCAACAACGGAGATTCACTAATAGTAGCTGTCAAACCAAAGCCACCTCCTAGGC Experimental SGN-U575948 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157341966|emb|CAO63422.1| (e_value=7e-71) unnamed; (*ATH) AT2G35360.1 (e_value=7e-58) | Symbol: None | ubiquitin family protein, contains INTERPRO:IPR000626 ubiquitin domain | chr2:14896128-14897922 REVERSE | Aliases: T32F12.26, T32F12_26; Solyc08g007030.2.1 genomic_reference:SL2.40ch08 gene_region:1596900-1602409 transcript_region:SL2.40ch08:1596900..1602409- functional_description:"Ubiquitin family protein (AHRD V1 ***- D7LHV6_ARALY); contains Interpro domain(s) IPR019387 Domain of unknown function SAYSvFN " 1 5 16 19 opLeV0100000931 sgn|U219093 ATGGTGGGGTGATTGAACATAACCAGGCCAGTTCTTCAGCCATGACAGATTCATCCAACGGGTCCGAGTC Experimental SGN-U567640 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|157353701|emb|CAO46233.1| (e_value=8e-97) unnamed; (*ATH) AT3G59580.2 (e_value=2e-82) Symbol: None | similar to RWP-RK domain-containing protein [Arabidopsis thaliana] (TAIR:At2g43500.1); similar to OSJNBa0067K08.5 [Oryza sativa (japonica cultivar-group)] (GB:XP_473028.1); contains InterPro domain Plant regulator RWP-RK (InterPro:IPR... ; Solyc11g045350.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:37656830-37662843 transcript_region:SL2.40ch11:37656830..37662843+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- B4ER14_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK " 1 1 16 19 opLeV0100000932 sgn|U219261 GTTATCAAGAAGGCAGAGGCTTAGGGAAAGATGGACAGGGTATTTCTGAGCCCATCGAAGCTCGCCAACG Experimental SGN-U584872 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|18398662|ref|NP_566359.1| (e_value=8e-106) expressed protein [Arabidopsis thaliana]; (*ATH) AT3G09850.1 (e_value=6e-108) | Symbol: None | D111/G-patch domain-containing protein, contains Pfam profile PF01585: G-patch domain | chr3:3023216-3025856 REVERSE | Aliases: F8A24.10; (*SWP) sp|A4UMC5|TFP11_RABIT (e_value=2e-11) Tuftelin-interacting protein 11 OS=Oryctolagus cuniculus GN=TFIP11; Solyc07g007040.2.1 genomic_reference:SL2.40ch07 gene_region:1819149-1827662 transcript_region:SL2.40ch07:1819149..1827662- go_terms:GO:0003676,GO:0005622 functional_description:"Zinc finger CCCH-type with G patch domain-containing protein (AHRD V1 *--- ZGPAT_NEMVE); contains Interpro domain(s) IPR000467 D111/G-patch " 3 5 8 19 opLeV0100000933 sgn|U219949 ATGCAAATGCAAATGCAAGCCCAAGACCAGTGTTCCTCTCAGGTGGCTCCAGTAGAAGCATTAGGACATG Experimental SGN-U570041 Tomato 200607#2 [28 ESTs aligned] (*GB) gi|58201894|gb|AAW67002.1| (e_value=9e-158) WRKY transcription factor-c [Capsicum annuum]; (*ATH) AT2G03340.1 (e_value=1e-86) | Symbol: None | WRKY family transcription factor, contains Pfam profile: PF03106 WRKY DNA -binding domain | chr2:1014347-1017012 REVERSE | Aliases: T4M8.23, T4M8_23; (*SWP) sp|Q9ZQ70|WRKY3_ARATH (e_value=1e-85) Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3; Solyc02g088340.2.1 genomic_reference:SL2.40ch02 gene_region:45045827-45048579 transcript_region:SL2.40ch02:45045827..45048579- go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor-c (AHRD V1 **** Q5DJV3_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY " 3 1 8 19 opLeV0100000934 sgn|U227553 GCAGTGCACTGCTGAGTCGAGCAAAGTTTCTTTGGTGCCACAACTTGATGGTCACTTATTAGCGGATATC Experimental SGN-U570335 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157343504|emb|CAO68010.1| (e_value=3e-35) unnamed; (*ATH) AT1G73960.1 (e_value=4e-28) Symbol: None | expressed protein, similar to TATA binding protein associated factor (GI:2827282) (Homo sapiens); similar to Transcription initiation factor TFIID 150 kDa subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325) (Drosophila melanogaster) | ... ; Solyc03g119780.2.1 genomic_reference:SL2.40ch03 gene_region:62396383-62411459 transcript_region:SL2.40ch03:62396383..62411459- go_terms:GO:0008270 functional_description:"Transcription initiation factor TFIID subunit (AHRD V1 *--- C7G081_DICDI); contains Interpro domain(s) IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal " 3 5 12 19 opLeV0100000935 sgn|U216987 ATACCCCATGCAGTAACATGGGCAGCTTCTATTGGCATCCTGGGCACTGGTTTACTGGCTAGCAAGGCTA Experimental SGN-U575161 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|157344688|emb|CAO70443.1| (e_value=8e-151) unnamed; (*ATH) AT2G44520.1 (e_value=2e-138) Symbol: None | UbiA prenyltransferase family protein, similar to SP:Q12887 Protoheme IX farnesyltransferase, mitochondrial precursor (EC 2.5.1.-) (Heme O synthase) {Homo sapiens}, SP:P21592 COX10 {Saccharomyces cerevisiae} | chr2:18386651-18389018 F... ; (*SWP) sp|Q8CFY5|COX10_MOUSE (e_value=8e-49) Protoheme IX farnesyltransferase, mitochondrial OS=Mus musculus GN=Cox10; Solyc01g080860.2.1 genomic_reference:SL2.40ch01 gene_region:72686531-72695319 transcript_region:SL2.40ch01:72686531..72695319- go_terms:GO:0016021 functional_description:"Protoheme IX farnesyltransferase (AHRD V1 ***- B6TRR8_MAIZE); contains Interpro domain(s) IPR006369 Protohaem IX farnesyltransferase " 3 1 12 19 opLeV0100000936 sgn|U222269 TGCCCAACATCAACATTTCTATCCACCGAGTCCATCACTGATTGCTCACTACCCACTCGGAAACTACTGT Experimental SGN-U566234 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157343397|emb|CAO67448.1| (e_value=2e-43) unnamed; (*ATH) AT3G44200.1 (e_value=1e-34) | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069; contains serine/threonine protein kinase domain, INTERPRO:IPR002290 | chr3:15917427-15922475 FORWARD | Aliases: F26G5.150; (*SWP) sp|Q0WPH8|NEK5_ARATH (e_value=1e-33) Serine/threonine-protein kinase Nek5 OS=Arabidopsis thaliana GN=NEK5; Solyc01g009300.2.1 genomic_reference:SL2.40ch01 gene_region:3337312-3344788 transcript_region:SL2.40ch01:3337312..3344788- go_terms:GO:0005515,GO:0016301 functional_description:"Serine/threonine kinase (AHRD V1 *-** C4QNN2_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 3 5 16 19 opLeV0100000937 sgn|U231355 TTCTGCCTTGGATAAATAGGGACAGAGCCATTTCCAATACTGAATGTCAAAAAGCAAACCTCAGATCACA Experimental SGN-U576184 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157336479|emb|CAO71164.1| (e_value=1e-56) unnamed; (*ATH) AT4G14930.1 (e_value=1e-43) Symbol: None | acid phosphatase survival protein SurE, putative, similar to Swiss-Prot:P36664 acid phosphatase surE (EC 3.1.3.2) (Stationary-phase survival protein surE) (Escherichia coli O157:H7); contains Pfam domain PF01975: Survival protein SurE... ; \N \N 3 1 16 19 opLeV0100000938 sgn|U213791 GGTATTGTACGATACTGAATGTTGCTCCCGGGGACAACCTTGATTGCTACGACCAGAGGAACTTTGCTGA Experimental SGN-U593805 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|544010|sp|Q05540|CHIB_SOLLC (e_value=2e-37) RecName:; (*ATH) AT3G12500.1 (e_value=5e-22) | Symbol: None | basic endochitinase, identical to basic endochitinase precursor SP:P19171 from (Arabidopsis thaliana) | chr3:3962389-3963971 REVERSE | Aliases: T2E22.18; (*SWP) sp|Q05540|CHIB_SOLLC (e_value=2e-38) Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17; Solyc02g082930.2.1 genomic_reference:SL2.40ch02 gene_region:41132090-41133663 transcript_region:SL2.40ch02:41132090..41133663+ go_terms:GO:0008843 functional_description:"Endochitinase (Chitinase) (AHRD V1 **** Q43184_SOLTU); contains Interpro domain(s) IPR016283 Glycoside hydrolase, family 19 IPR000726 Glycoside hydrolase, family 19, catalytic " 2 6 6 19 opLeV0100000939 sgn|U221594 CAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCC Experimental SGN-U568785 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|19743740|gb|AAL92461.1| (e_value=6e-144) putative glucosyltransferase [Lycopersicon esculentum]; (*ATH) AT4G34131.1 (e_value=3e-50) | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr4:16343061-16344822 REVERSE | Aliases: F28A23.2; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=5e-129) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1; Solyc10g079930.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60702629-60703942 transcript_region:SL2.40ch10:60702629..60703942- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 ***- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase " 2 2 6 19 opLeV0100000940 sgn|U216564 GATGGAGGTGATCATCAACTTATGCATCAACAAAATCGTCTCACTAACACAGAGGGTTTCTTTCAGCCTC Experimental SGN-U591583 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|31747208|gb|AAP57412.1| (e_value=1e-69) MADS-box protein 1 [Lycopersicon esculentum]; (*ATH) AT5G15800.1 (e_value=2e-29) Symbol: None | developmental protein SEPALLATA1 / floral homeotic protein (AGL2) (SEP1), identical to developmental protein SEPALLATA1 / floral homeotic protein (AGL2 / SEP1) SP:P29382 from (Arabidopsis thaliana) | chr5:5151080-5154156 REVERSE | Ali... ; (*SWP) sp|Q39685|CMB1_DIACA (e_value=9e-32) MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1; Solyc03g114840.2.1 genomic_reference:SL2.40ch03 gene_region:58767673-58773979 transcript_region:SL2.40ch03:58767673..58773979- go_terms:GO:0005515,GO:0003700 functional_description:"MADS box transcription factor 11 (AHRD V1 **** D9IFM5_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box " 2 6 10 19 opLeV0100000941 sgn|U229655 TTGGCTCGACGTGGCCACAGAGTTATGGTTGTGGCACCTCGTTATGACAACTATCCTGAACCTCAAGATT Experimental SGN-U567954 Tomato 200607#2 [32 ESTs aligned] (*GB) gi|57015403|sp|Q43847|SSY2_SOLTU (e_value=0) Granule-bound; (*ATH) AT3G01180.1 (e_value=0) | Symbol: None | glycogen synthase, putative, similar to glycogen synthase Q43847 from (Solanum tuberosum) | chr3:62252-65852 REVERSE | Aliases: T4P13.13, T4P13_13; (*SWP) sp|Q43847|SSY2_SOLTU (e_value=0) Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2; Solyc02g088000.2.1 genomic_reference:SL2.40ch02 gene_region:44808426-44814838 transcript_region:SL2.40ch02:44808426..44814838+ go_terms:GO:0004373,GO:0005515 functional_description:"Glycogen synthase (AHRD V1 **** D5MJP6_9BACT); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type " 2 2 10 19 opLeV0100000942 sgn|U224542 CTCTGTGATTTACCAGTTGTACGCCTCTTGAAATTCACAGGCAGCTTACTCGAGCGTAGTGGGAAGTCCT Experimental SGN-U576792 Tomato 200607#2 [5 ESTs aligned] \N \N 2 6 14 19 opLeV0100000943 sgn|U230686 TCTCCGACCTATCATGGTCGTCTGATTCAAGTTACATATGCTCCGCCTCTGACGATCGCACGCTTCGTAT Experimental SGN-U566936 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|147783779|emb|CAN61446.1| (e_value=4e-126) hypothetical; (*ATH) AT4G02730.1 (e_value=3e-118) | Symbol: None | transducin family protein / WD-40 repeat family protein, similar to C. elegans putative WD-repeat protein C14B1.4 (SP:Q17963) | chr4:1207725-1209287 FORWARD | Aliases: T5J8.2, T5J8_2; (*SWP) sp|Q2KIG2|WDR5_BOVIN (e_value=1e-98) WD repeat-containing protein 5 OS=Bos taurus GN=WDR5; Solyc09g065290.2.1 genomic_reference:SL2.40ch09 gene_region:58949458-58951870 transcript_region:SL2.40ch09:58949458..58951870+ go_terms:GO:0035064 functional_description:"Wd-repeat protein (AHRD V1 **-- Q17GJ0_AEDAE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region " 2 2 14 19 opLeV0100000944 sgn|U218308 CAGCTCCCGTATGCTAGAGGAGACCTTATATGTCCCTGATTCTCACAGTCGCAGGAACTTAGTTCGATAT Experimental SGN-U567106 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|157339484|emb|CAO44025.1| (e_value=0) unnamed; (*ATH) AT5G25820.1 (e_value=2e-170) | Symbol: None | exostosin family protein, contains Pfam profile: PF03016 exostosin family | chr5:8997186-9000318 REVERSE | Aliases: F18A17.70, F18A17_70; (*SWP) sp|O01704|EXT1_CAEEL (e_value=1e-11) Multiple exostoses homolog 1 OS=Caenorhabditis elegans GN=rib-1; Solyc08g066680.2.1 genomic_reference:SL2.40ch08 gene_region:52713239-52717107 transcript_region:SL2.40ch08:52713239..52717107- go_terms:GO:0003824 functional_description:"Exostosin family protein (AHRD V1 ***- D7M9P2_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like " 4 6 6 19 opLeV0100000945 sgn|U213997 CGGTGGAAAATTCCCTCAACACCAGAAAAAACCAATCTCAGCTCCACCAGCTGAGAAATCCCCAAAGTTC Experimental SGN-U578472 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|157348474|emb|CAO23366.1| (e_value=1e-84) unnamed; (*ATH) AT1G18540.1 (e_value=7e-83) | Symbol: None | 60S ribosomal protein L6 (RPL6A), similar to 60S ribosomal protein L6 GI:7208784 from (Cicer arietinum) | chr1:6377314-6378571 REVERSE | Aliases: F25I16.12, F25I16_12; (*SWP) sp|P34091|RL6_MESCR (e_value=2e-84) 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6; Solyc04g014720.2.1 genomic_reference:SL2.40ch04 gene_region:4982850-4985110 transcript_region:SL2.40ch04:4982850..4985110+ go_terms:GO:0003735,GO:0003723 functional_description:"60S ribosomal protein L6 (AHRD V1 ***- B9RHH3_RICCO); contains Interpro domain(s) IPR000915 Ribosomal protein L6E " 4 2 6 19 opLeV0100000946 sgn|U220254 CGTACATCTGATATGATCGACAACTAGTGTTGAATGAGGATCTGAATTTTGTGTCCATGCAGGGCCTTGA Experimental SGN-U594066 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15236947|ref|NP_194432.1| (e_value=2e-44) expressed protein [Arabidopsis thaliana]; (*ATH) AT4G27020.1 (e_value=2e-46) | Symbol: None | expressed protein, gene F20P5.12 of BAC F20P5 from Arabidopsis thalianachromosome 1, PID:g2194125 | chr4:13568439-13571480 REVERSE | Aliases: F10M23.360, F10M23_360; \N \N 4 6 10 19 opLeV0100000947 sgn|U215710 GGATGGACTGCGCGTATAACGCTCTTTAACTGGGGAAATGACGCGTTTGAAAACTGGTTTTCCTCTATCC Experimental SGN-U575311 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|157360457|emb|CAO69680.1| (e_value=0) unnamed; (*ATH) AT3G20580.1 (e_value=0) | Symbol: None | phytochelatin synthetase-related, contains Pfam PF04833: Phytochelatin synthetase-like conserved region; supporting cDNA gi:26452232:dbj:AK118605.1: | chr3:7187862-7190568 REVERSE | Aliases: K10D20.12; (*SWP) sp|Q9LJU0|CBL10_ARATH (e_value=0) COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10; Solyc07g064200.2.1 genomic_reference:SL2.40ch07 gene_region:63669570-63672071 transcript_region:SL2.40ch07:63669570..63672071+ functional_description:"COBRA-like protein (AHRD V1 ***- Q655F2_ORYSJ); contains Interpro domain(s) IPR006918 Glycosyl-phosphatidyl inositol-anchored, plant " 4 2 10 19 opLeV0100000948 sgn|U216540 TTACGTTATGCAACTGTGAAAGCTGGCCGCTGGGTAATGTTTTAGATATGCAGGCCTGCTGAGGTGTCTT Experimental SGN-U572749 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|42561642|ref|NP_171802.2| (e_value=1e-24) phosphoribulokinase/uridine kinase family protein [Arabidopsis thaliana]; (*ATH) AT1G03030.1 (e_value=9e-27) Symbol: None | phosphoribulokinase/uridine kinase family protein, contains Pfam PF00485: Phosphoribulokinase / Uridine kinase family; Belongs to Interpro IPR006083 Phosphoribulokinase/uridine kinase family; similar to Uridine kinase (Uridine monopho... ; \N \N 4 6 14 19 opLeV0100000949 sgn|U230398 GTCGTCATGTCAAAGCTGTCATGTTGGTATGTTCATTCTCTCCGTCTCAATTTACGCAAACGTATTTGAC Experimental SGN-U565858 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157345054|emb|CAO71782.1| (e_value=5e-68) unnamed; (*ATH) AT3G48310.1 (e_value=4e-40) | Symbol: None | cytochrome P450 71A22, putative (CYP71A22), Identical to Cytochrome P450 71A22 (SP:Q9STL1)(Arabidopsis thaliana) | chr3:17899086-17900799 FORWARD | Aliases: None; (*SWP) sp|Q9STL1|C71AM_ARATH (e_value=3e-39) Cytochrome P450 71A22 OS=Arabidopsis thaliana GN=CYP71A22; \N \N 4 2 14 19 opLeV0100000950 sgn|U217289 TCCCTGTTTCAAGCTCGGTTTCATGGCTGCCAATCTAGCCATCCTTGAAGCTGTAGCTGACCACCCATTT Experimental SGN-U569012 Tomato 200607#2 [32 ESTs aligned] (*GB) gi|89474476|gb|ABD72965.1| (e_value=0) GRAS10; (*ATH) AT5G52510.1 (e_value=2e-133) | Symbol: None | scarecrow-like transcription factor 8 (SCL8) | chr5:21324275-21326528 FORWARD | Aliases: T4M5.2, T4M5_2; (*SWP) sp|Q8GVE1|CIGR2_ORYSJ (e_value=1e-61) Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2; Solyc03g025170.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7005987-7007882 transcript_region:SL2.40ch03:7005987..7007882- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9H3H7_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor " 2 6 8 19 opLeV0100000951 sgn|U223214 ATTTGGCTAGAAAAACTTTACGTCGATTAAAAGGACATACAAGGTTACAATCCCTGACACAACGTCCTTC Experimental SGN-U566701 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157358666|emb|CAO66351.1| (e_value=8e-78) unnamed; (*ATH) AT2G33990.1 (e_value=1e-56) Symbol: None | similar to calmodulin-binding family protein [Arabidopsis thaliana] (TAIR:At3g15050.1); similar to putative SF16 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD73780.1); contains InterPro domain IQ calmodulin-binding region (... ; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=6e-23) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1; Solyc02g077260.2.1 genomic_reference:SL2.40ch02 gene_region:36828296-36831764 transcript_region:SL2.40ch02:36828296..36831764- go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6TIB2_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region " 2 2 8 19 opLeV0100000952 sgn|U222018 AGCCAGAGGACAGAGAACTTTCACACTATAGTTTGGACTTACCATCCAATCATATTAAAAGAGCTCAAAG Experimental SGN-U586041 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|94483077|gb|ABF22603.1| (e_value=0) HAK5; (*ATH) AT4G13420.1 (e_value=0) Symbol: None | potassium transporter (HAK5), identical to K+ transporter HAK5 (Arabidopsis thaliana) gi:7108597:gb:AAF36490; similar to high-affinity potassium transporter AtKUP1p (Arabidopsis thaliana) gi:2688979:gb:AAB88901; KUP/HAK/KT Transporter... ; (*SWP) sp|Q9M7K4|POT5_ARATH (e_value=0) Potassium transporter 5 OS=Arabidopsis thaliana GN=POT5; Solyc12g005670.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:358968-363938 transcript_region:SL2.40ch12:358968..363938+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** Q1T6Z3_PHRAU); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter " 2 6 12 19 opLeV0100000953 sgn|U222438 AAGGATCATCGCAAGAAACAGTGAATTCGTCGTCTAGCTATGGAATAAAGGAAGAGGAAGTGACCTCATA Experimental SGN-U566374 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147854608|emb|CAN78568.1| (e_value=2e-47) hypothetical; (*ATH) AT3G23240.1 (e_value=2e-39) Symbol: ERF1 | encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. E... ; (*SWP) sp|Q8LDC8|ERF92_ARATH (e_value=2e-38) Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B; Solyc09g066360.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:60391559-60392140 transcript_region:SL2.40ch09:60391559..60392140+ go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene-responsive transcription factor 2 (AHRD V1 **** B6SSU7_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding " 2 2 12 19 opLeV0100000954 sgn|U223841 GGATCAGGATCATTTGGGAGTGTTCATTTGGCAATGGACAAGGCGACCGGAGGATTTTTCGTGTTGAAAT Experimental SGN-U563291 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157354277|emb|CAO46878.1| (e_value=1e-83) unnamed; (*ATH) AT5G55090.1 (e_value=2e-52) | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr5:22374078-22375424 REVERSE | Aliases: MCO15.4, MCO15_4; (*SWP) sp|O22042|M3K3_ARATH (e_value=2e-43) Mitogen-activated protein kinase kinase kinase 3 OS=Arabidopsis thaliana GN=ANP3; Solyc01g103240.2.1 genomic_reference:SL2.40ch01 gene_region:83654054-83655666 transcript_region:SL2.40ch01:83654054..83655666+ go_terms:GO:0006468 functional_description:"Protein serine/threonine kinase (AHRD V1 ***- D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 2 6 16 19 opLeV0100000955 sgn|U217520 GGTGGCAACTCTCTCCGTTCCTCTCAGGGTGACTTATACAGAGCAGAGTCCAAGTCTCTTTTGAATAATG Experimental SGN-U573535 Tomato 200607#2 [11 ESTs aligned] Solyc06g066460.2.1 genomic_reference:SL2.40ch06 gene_region:38112736-38113939 transcript_region:SL2.40ch06:38112736..38113939- functional_description:"Unknown Protein (AHRD V1)" 2 2 16 19 opLeV0100000956 sgn|U221199 TGGAATTAACGATCGGACGACACGTGGATCGATCGCCGTTCTCCAATCGCAAAGTGCTGTGGACGCCAAG Experimental SGN-U579855 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157329307|emb|CAO39788.1| (e_value=1e-71) unnamed; (*ATH) AT1G05000.1 (e_value=5e-70) | Symbol: None | tyrosine specific protein phosphatase family protein, contains tyrosine specific protein phosphatases active site, PROSITE:PS00383 | chr1:1425592-1428781 FORWARD | Aliases: T7A14.14, T7A14_14; (*SWP) sp|Q9ZVN4|Y1500_ARATH (e_value=4e-69) Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000; Solyc11g011970.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4921104-4924448 transcript_region:SL2.40ch11:4921104..4924448- go_terms:GO:0016311 functional_description:"Tyrosine phosphatase family protein (AHRD V1 ***- B8N9Z8_ASPFN); contains Interpro domain(s) IPR020428 Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic " 4 6 8 19 opLeV0100000957 sgn|U235006 GAGGTTCAACATTAATGGTGCTATTGACCGTGAAACTTTCAAGTCTAAGGTCCCCGTTGTTACATACGAG Experimental SGN-U573534 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157345229|emb|CAO71957.1| (e_value=0) unnamed; (*ATH) AT2G14960.1 (e_value=0) | Symbol: GH3.1 | encodes a protein similar to IAA-amido synthases. Lines carrying an insertion in this gene are hypersensitive to auxin. | chr2:6458454-6460752 REVERSE | Aliases: T26I20.12, T26I20_12, GH3.1; (*SWP) sp|O82333|GH31_ARATH (e_value=0) Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1; Solyc02g092820.2.1 genomic_reference:SL2.40ch02 gene_region:48369709-48372206 transcript_region:SL2.40ch02:48369709..48372206- go_terms:GO:0010279 functional_description:"Indole-3-acetic acid-amido synthetase GH3.8 (AHRD V1 **** B6U4E2_MAIZE); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter " 4 6 12 19 opLeV0100000958 sgn|U219320 CAGCTTGAATGGGACAATTCCTGTTGACCTACTTGAGCTACACTTTTTGGCAATATTCAGCGTAGCATAC Experimental SGN-U569716 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|157339774|emb|CAO44315.1| (e_value=2e-150) unnamed; (*ATH) AT1G74170.1 (e_value=1e-120) Symbol: None | leucine-rich repeat family protein, contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2 (Lycopersicon pimpinellifolium) gi:1184077:gb:AAC15780 | chr1:27895155-27899306 REVERSE | Aliases: F9E1... ; (*SWP) sp|Q9ZPS9|BRL2_ARATH (e_value=1e-53) Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL1; Solyc04g014400.2.1 genomic_reference:SL2.40ch04 gene_region:4642331-4650160 transcript_region:SL2.40ch04:4642331..4650160- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP" 4 2 12 19 opLeV0100000959 sgn|U226906 ATGTAGGGACACATCGGATTGAAAGTGAAACTCTTAGCAAGGGATGCATTTGCTAAAAAACAAGTTTGTG Experimental SGN-U581020 Tomato 200607#2 [5 ESTs aligned] \N \N 4 6 16 19 opLeV0100000960 sgn|U231149 TGCGCGGACATTTAGCTGTGAGTAGATATTGTACTGCTATGAAATGCCTCAACTGGAGCTAGCAGGAAAG Experimental SGN-U569896 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157354567|emb|CAO47878.1| (e_value=3e-31) unnamed; (*ATH) AT1G56180.1 (e_value=7e-33) | Symbol: None | expressed protein | chr1:21029569-21031729 REVERSE | Aliases: F14G9.20; Solyc07g066620.2.1 genomic_reference:SL2.40ch07 gene_region:65212626-65216103 transcript_region:SL2.40ch07:65212626..65216103+ functional_description:"Os02g0169000 protein (Fragment) (AHRD V1 ***- Q0E3K5_ORYSJ)" 4 2 16 19 opLeV0100000961 sgn|U215776 GCTTGCTCCGGGTTGTTGAACCTAGTCTCGCAGTTTTGCCACCTACGACTAGCTAGTATCATTTCTTGAT Experimental SGN-U593631 Tomato 200607#2 [1 ESTs aligned] Solyc01g007110.2.1 genomic_reference:SL2.40ch01 gene_region:1660222-1663543 transcript_region:SL2.40ch01:1660222..1663543+ functional_description:"NC domain-containing protein (AHRD V1 **-- D7LZP9_ARALY); contains Interpro domain(s) IPR007053 NC " 2 5 6 19 opLeV0100000962 sgn|U221925 GTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGA Experimental SGN-U565057 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|147770085|emb|CAN69886.1| (e_value=4e-114) hypothetical; (*ATH) AT3G09770.1 (e_value=9e-100) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) | chr3:2996283-2998195 REVERSE | Aliases: F11F8.36; (*SWP) sp|Q9D074|MGRN1_MOUSE (e_value=5e-32) Probable E3 ubiquitin-protein ligase MGRN1 OS=Mus musculus GN=Mgrn1; Solyc09g007700.2.1 genomic_reference:SL2.40ch09 gene_region:1244231-1249357 transcript_region:SL2.40ch09:1244231..1249357- go_terms:GO:0008270 functional_description:"RING finger protein B (AHRD V1 *-*- RNGB_DICDI); contains Interpro domain(s) IPR001841 Zinc finger, RING-type " 2 1 6 19 opLeV0100000963 sgn|U226676 AGCTTTCAGGTGCAAAGCTGAAACAGCACATGGTGAAGGCATGCCAAGAACTTGATCGCCTAAGACTGCA Experimental SGN-U565341 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157355622|emb|CAO49439.1| (e_value=1e-40) unnamed; (*ATH) AT3G49060.1 (e_value=8e-28) | Symbol: None | protein kinase family protein / U-box domain-containing protein, contains Pfam profile: PF00069 Eukaryotic protein kinase domain | chr3:18198211-18202900 REVERSE | Aliases: T2J13.100; (*SWP) sp|Q94A51|PUB32_ARATH (e_value=7e-27) U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32; Solyc03g025450.2.1 genomic_reference:SL2.40ch03 gene_region:7242406-7250906 transcript_region:SL2.40ch03:7242406..7250906- go_terms:GO:0006468,GO:0000151 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 2 5 10 19 opLeV0100000964 sgn|U235412 ACTCCAGGCGGGGGCATTGGCCCCCCCACCAATTAAAACCCGGGGTTTGACCCCCCTTGCGGGTTTTTAG Experimental SGN-U601961 Tomato 200607#2 [1 ESTs aligned] \N \N 2 1 10 19 opLeV0100000965 sgn|U227487 GATACGAGTGAAAATCATCAGAATCGTTGTAGAGATTGATATATACAGGTTCACAAGTTCGAAGAAGGAT Experimental SGN-U568894 Tomato 200607#2 [3 ESTs aligned] \N \N 2 5 14 19 opLeV0100000966 sgn|U213179 GCACTAGTGGTGCTCCCTCAGATTCAGCTCCTGAGCCTATCCTTGTGTAGATCAATTCTTCATTTAGCTC Experimental SGN-U577439 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|399212|sp|P31541|CLPAA_SOLLC (e_value=2e-128) RecName:; (*ATH) AT5G50920.1 (e_value=3e-121) Symbol: CLPC | Similar to ATP-dependent Clp protease ATP-binding subunit / ClpC, almost identical to ClpC GI:2921158 from (Arabidopsis thaliana); contains Pfam profile PF02861: Clp amino terminal domain; contains Pfam profile PF00004: ATPase, AAA fa... ; (*SWP) sp|P31541|CLPAA_SOLLC (e_value=2e-129) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A; Solyc03g118340.2.1 genomic_reference:SL2.40ch03 gene_region:61298619-61303516 transcript_region:SL2.40ch03:61298619..61303516- go_terms:GO:0004176 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-* Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 " 2 1 14 19 opLeV0100000967 sgn|U213281 AGCTTCTGGAGGGGAAACAACTTCCTGGGGTGCTTGCCCTGGATGACGCCTAAGCAATATATGCTCTTTT Experimental SGN-U591414 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|61969012|gb|AAX57323.1| (e_value=9e-65) putative; (*ATH) AT1G79550.1 (e_value=8e-62) Symbol: None | phosphoglycerate kinase, putative, similar to SP:P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase | chr1:29928916-29931335 REVERSE |... ; (*SWP) sp|Q42962|PGKY_TOBAC (e_value=6e-65) Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum; Solyc07g066600.2.1 genomic_reference:SL2.40ch07 gene_region:65205704-65208684 transcript_region:SL2.40ch07:65205704..65208684- go_terms:GO:0005524 functional_description:"Phosphoglycerate kinase (AHRD V1 ***- Q2VCK2_SOLTU); contains Interpro domain(s) IPR001576 Phosphoglycerate kinase " 4 5 6 19 opLeV0100000968 sgn|U238105 TCTTTCTTCACAGTGGAAAAATTCTGCGTGGCGATCCTTGAAGGTCCGATGGGACGAGCCTGCAGCCATT Experimental SGN-U576826 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157360302|emb|CAO69513.1| (e_value=0) unnamed; (*ATH) AT4G23980.1 (e_value=1e-178) | Symbol: None | auxin-responsive factor (ARF9), contains Pfam profiles: PF02309 AUX/IAA family and PF02362: B3 DNA binding domain | chr4:12451307-12455014 FORWARD | Aliases: T32A16.150, T32A16_150; (*SWP) sp|Q9XED8|ARFI_ARATH (e_value=1e-177) Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9; Solyc08g082630.2.1 genomic_reference:SL2.40ch08 gene_region:62527536-62531812 transcript_region:SL2.40ch08:62527536..62531812+ go_terms:GO:0003700 functional_description:"Auxin response factor 9 (AHRD V1 **** D7R605_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor " 4 5 10 19 opLeV0100000969 sgn|U215566 CGTTCAAAGCCGAAATCGACTACTGCCGACGACACACCGGAGGAACCTAAGTCTGATACTAATTCTAGTA Experimental SGN-U582777 Tomato 200607#2 [32 ESTs aligned] (*GB) gi|157343430|emb|CAO67936.1| (e_value=2e-52) unnamed; (*ATH) AT5G60850.1 (e_value=8e-36) | Symbol: None | Dof-type zinc finger domain-containing protein, similar to zinc finger protein OBP4 gi:5059396 from (Arabidopsis thaliana); EMBL:AF155817 | chr5:24497675-24499094 FORWARD | Aliases: MAE1.2, MAE1_2; (*SWP) sp|Q8LDR0|DOF54_ARATH (e_value=8e-35) Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4; \N \N 4 1 10 19 opLeV0100000970 sgn|U227174 CAGATAATACAATAATTCAATATGGAGATACAGCACAAACTATTGGCCCAAATGGAAAACCCCTTGGCAC Experimental SGN-U589216 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147776052|emb|CAN63186.1| (e_value=3e-70) hypothetical; (*ATH) AT5G19730.1 (e_value=8e-66) | Symbol: None | pectinesterase family protein, contains Pfam profile: PF01095 pectinesterase | chr5:6670460-6673284 FORWARD | Aliases: T29J13.150, T29J13_150; (*SWP) sp|P83218|PME_DAUCA (e_value=5e-20) Pectinesterase OS=Daucus carota; Solyc12g008530.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1935700-1941362 transcript_region:SL2.40ch12:1935700..1941362- go_terms:GO:0005618 functional_description:"Pectinesterase (AHRD V1 ***- B9RKG6_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic " 4 5 14 19 opLeV0100000971 sgn|U225516 CTATGTTCAGTGCTGCAGCTCGTGCACGTCTAAGATCCCTGTGGCTTGCATCAAGAAGCCTTTGGTCACC Experimental SGN-U591715 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|159138203|gb|ABW89104.1| (e_value=1e-12) glyceraldehyde-3-phosphate; (*ATH) AT1G12900.2 (e_value=2e-14) |; (*SWP) sp|P19866|G3PA_SPIOL (e_value=2e-13) Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA; Solyc04g009030.2.1 genomic_reference:SL2.40ch04 gene_region:2597412-2600773 transcript_region:SL2.40ch04:2597412..2600773+ go_terms:GO:0004365 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase (AHRD V1 **** D7UNZ5_BRARC); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase " 4 1 14 19 opLeV0100000972 sgn|U225854 AAAAATGGACTCCCCCAGACAGGAAAGTAGAACCTTGGAGAACTTAGCGGTTCATATCGACAGACCTGAT Experimental SGN-U572440 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157345562|emb|CAO14860.1| (e_value=1e-10) unnamed; Solyc03g113660.2.1 genomic_reference:SL2.40ch03 gene_region:57790465-57793218 transcript_region:SL2.40ch03:57790465..57793218+ functional_description:"Unknown Protein (AHRD V1)" 2 5 8 19 opLeV0100000973 sgn|U229508 GCTTCTAGACTTTTTGGATTCCCAAGGCGGCAGACATCCTTTATAGTGGGAGTGCAAGAACAACGATGAT Experimental SGN-U571747 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157340857|emb|CAO47662.1| (e_value=4e-12) unnamed; Solyc01g109430.2.1 genomic_reference:SL2.40ch01 gene_region:88144922-88146935 transcript_region:SL2.40ch01:88144922..88146935- functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 **-- PPDE1_XENLA); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic " 2 1 8 19 opLeV0100000974 sgn|U221968 TGGTGCCTTCTTGGAGAAGGATGGGGCAGGTTTTAAAGGTCAGATAAAGCTTACAGGATGCAAAAGCGGG Experimental SGN-U583870 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|7939617|gb|AAF70821.1|AF154420_1 (e_value=0) beta-galactosidase; (*ATH) AT2G32810.1 (e_value=0) | Symbol: None | beta-galactosidase, putative / lactase, putative, similar to beta-galactosidase GI:7939617 from (Lycopersicon esculentum) | chr2:13925214-13932408 REVERSE | Aliases: F24L7.5, F24L7_5; (*SWP) sp|Q9SCV3|BGAL9_ARATH (e_value=0) Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BGAL9; Solyc09g092160.2.1 genomic_reference:SL2.40ch09 gene_region:66653813-66668675 transcript_region:SL2.40ch09:66653813..66668675- go_terms:GO:0004565 functional_description:"Beta-galactosidase (AHRD V1 **** A2JGW9_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 " 2 5 12 19 opLeV0100000975 sgn|U212750 AAGATGATTTGCTTGCTTTTTTCCAAGCTTTCACTCGTGCTCAAGCTGCAGCTTCTGCTTCTACTCAAAA Experimental SGN-U579363 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|416651|sp|Q03664|GSTX3_TOBAC (e_value=2e-87) Probable; (*ATH) AT3G09270.1 (e_value=3e-53) | Symbol: None | glutathione S-transferase, putative, similar to glutathione transferase GB:CAA71784 (Glycine max) | chr3:2848295-2849293 REVERSE | Aliases: F3L24.14; (*SWP) sp|Q03664|GSTX3_TOBAC (e_value=1e-88) Probable glutathione S-transferase OS=Nicotiana tabacum; Solyc09g011510.2.1 genomic_reference:SL2.40ch09 gene_region:4820455-4821500 transcript_region:SL2.40ch09:4820455..4821500- go_terms:GO:0004364,GO:0043295 functional_description:"Glutathione S-transferase-like protein (AHRD V1 **** A8DUB0_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal " 2 1 12 19 opLeV0100000976 sgn|U223571 CCAACTCTTCTCTGGCAGTTCACGCTGGCATGCATCAAGATGAATAGGCTTGACCTGGCTAAGAAGGCAG Experimental SGN-U583273 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|163913884|emb|CAP59645.1| (e_value=0) putative; (*ATH) AT1G56560.1 (e_value=0) Symbol: None | beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165; contains Pfam profile PF04853: Plant neutral invertase | chr1:21196... ; Solyc01g100810.2.1 genomic_reference:SL2.40ch01 gene_region:82498414-82504152 transcript_region:SL2.40ch01:82498414..82504152- go_terms:GO:0004564 functional_description:"Neutral invertase (AHRD V1 ***- A7LH71_VITVI); contains Interpro domain(s) IPR006937 Plant neutral invertase " 2 5 16 19 opLeV0100000977 sgn|U227726 GAACTGGATTTGAAGGGTGGTAAGTTGGCTTCGGATGAGAAGAGTAAACCAAAAGCTGGAAAGCTAACAC Experimental SGN-U563383 Tomato 200607#2 [4 ESTs aligned] Solyc02g082810.2.1 genomic_reference:SL2.40ch02 gene_region:41034299-41044992 transcript_region:SL2.40ch02:41034299..41044992+ go_terms:GO:0006396 functional_description:"CCA-adding enzyme (AHRD V1 *--- CCA_STAHJ); contains Interpro domain(s) IPR002646 Polynucleotide adenylyltransferase region " 2 1 16 19 opLeV0100000978 sgn|U219643 TGCCAACTCTTGTGATAAACAATAGGCAGTACAGAGGCAAGTTGGACAAGGGAGCTGTTCTGAAGGCCAT Experimental SGN-U588943 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|83284015|gb|ABC01915.1| (e_value=5e-135) vacuolar; (*ATH) AT3G52850.1 (e_value=1e-122) | Symbol: None | vacuolar sorting receptor, putative, nearly identical to vacuolar sorting receptor homolog (GP:1737218) (Arabidopsis thaliana) | chr3:19598799-19602925 FORWARD | Aliases: F8J2.20; (*SWP) sp|P93026|VSR1_ARATH (e_value=1e-121) Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1; Solyc10g074980.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58012185-58017901 transcript_region:SL2.40ch10:58012185..58017901+ go_terms:GO:0005515,GO:0009940 functional_description:"Vacuolar sorting receptor (AHRD V1 **** Q93X09_VIGMU); contains Interpro domain(s) IPR003137 Protease-associated PA " 4 5 8 19 opLeV0100000979 sgn|U217976 CCGGATCTAAGGATGAGTCACAATGTGCACAAAATGTCATCGTTGCTAGGGGGTGCTCTTTTCATAGCTG Experimental SGN-U567235 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|147801559|emb|CAN77015.1| (e_value=6e-106) hypothetical; (*ATH) AT1G70900.1 (e_value=2e-101) | Symbol: None | expressed protein | chr1:26735523-26737537 FORWARD | Aliases: F15H11.13, F15H11_13; Solyc04g007730.2.1 genomic_reference:SL2.40ch04 gene_region:1405640-1410539 transcript_region:SL2.40ch04:1405640..1410539- functional_description:"Unknown Protein (AHRD V1)" 4 1 8 19 opLeV0100000980 sgn|U227548 GAAGAATTTTTGCAGCAAATTCCTCAAAAGAAGGCTAGAGTATCTATACGGGCTGTGTGTGACACTATTA Experimental SGN-U571279 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157350932|emb|CAO41047.1| (e_value=1e-57) unnamed; (*ATH) AT5G15130.1 (e_value=8e-49) | Symbol: None | WRKY family transcription factor, contains Pfam profile: PF03106#WRKY DNA -binding domain; TMV response-related gene product, Nicotiana tabacum, EMBL:AB024510 | chr5:4904429-4906882 FORWARD | Aliases: F8M21.20, F8M21_20; (*SWP) sp|Q9LXG8|WRK72_ARATH (e_value=7e-48) Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72; Solyc05g007110.2.1 genomic_reference:SL2.40ch05 gene_region:1679764-1683310 transcript_region:SL2.40ch05:1679764..1683310+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 72 (AHRD V1 ***- C5H9Z9_BRANA); contains Interpro domain(s) IPR003657 DNA-binding WRKY " 4 5 12 19 opLeV0100000981 sgn|U219134 GAGGAAGGGTATACTCCAGAGAGCTCAATGAAGATTGGCGGAGACTTACTTACCACAACTACTTGGTGTC Experimental SGN-U572680 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157335638|emb|CAO61468.1| (e_value=2e-116) unnamed; (*ATH) AT1G27760.3 (e_value=2e-102) Symbol: None | interferon-related developmental regulator family protein / IFRD protein family, contains Pfam PF05004: Interferon-related developmental regulator (IFRD); similar to IFR1 protein GI:16580630 (Gallus gallus); similar to Interferon-rela... ; (*SWP) sp|Q5S1U6|IFRD1_PIG (e_value=8e-19) Interferon-related developmental regulator 1 OS=Sus scrofa GN=IFRD1; Solyc12g088370.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62221196-62225965 transcript_region:SL2.40ch12:62221196..62225965+ go_terms:GO:0005488 functional_description:"Interferon-related developmental regulator family protein (AHRD V1 ***- B4FQN7_MAIZE); contains Interpro domain(s) IPR007701 Interferon-related developmental regulator, N-terminal " 4 1 12 19 opLeV0100000982 sgn|U227203 ACCATCAGATGTGGTTGGGTCAAGATTAGCCAACGCTGTTGCACTGCCATTTTGAGGACATATTTGCCTA Experimental SGN-U580068 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|115345280|dbj|BAF33316.1| (e_value=4e-68) peroxidase; (*ATH) AT5G06720.1 (e_value=1e-65) | Symbol: None | peroxidase, putative, identical to peroxidase (Arabidopsis thaliana) gi:1491617:emb:CAA68212 | chr5:2077430-2079006 REVERSE | Aliases: MPH15.8, MPH15_8; (*SWP) sp|Q42578|PER53_ARATH (e_value=1e-64) Peroxidase 53 OS=Arabidopsis thaliana GN=PER53; Solyc11g072920.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53161025-53162350 transcript_region:SL2.40ch11:53161025..53162350- go_terms:GO:0055114 functional_description:"Peroxidase 5 (AHRD V1 ***- Q9XFL6_PHAVU); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial " 4 5 16 19 opLeV0100000983 sgn|U214157 CTCTCAGCTTCGCCTTCGGCGTATTCAGCCAATCCTAAATCCAAATTATCAACTCCACCAACACTAACCG Experimental SGN-U576354 Tomato 200607#2 [63 ESTs aligned] (*GB) gi|157340860|emb|CAO47665.1| (e_value=0) unnamed; (*ATH) AT5G66680.1 (e_value=4e-180) Symbol: None | dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein, similar to SP:Q05052 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit precursor (EC 2.4.1.119) (Oligosaccharyl tr... ; (*SWP) sp|P39656|OST48_HUMAN (e_value=5e-93) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit OS=Homo sapiens GN=DDOST; Solyc01g109410.2.1 genomic_reference:SL2.40ch01 gene_region:88132748-88140649 transcript_region:SL2.40ch01:88132748..88140649- go_terms:GO:0005515 functional_description:"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit (AHRD V1 ***- C1C2G2_9MAXI); contains Interpro domain(s) IPR005013 Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit " 4 1 16 19 opLeV0100000984 sgn|U218888 CAACTTTATCAGGCCTTTTACTAGGGTACATGGAGCAGGGGGAGATTCTGAAAGAGCATCCACCAATGAA Experimental SGN-U567546 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157347643|emb|CAO18280.1| (e_value=3e-99) unnamed; (*ATH) AT4G24380.1 (e_value=4e-54) | Symbol: None | expressed protein, contains Pfam profile: PF03959 domain of unknown function (DUF341) | chr4:12612546-12614027 FORWARD | Aliases: T22A6.210, T22A6_210; (*SWP) sp|P36591|DYR_SCHPO (e_value=6e-19) Dihydrofolate reductase OS=Schizosaccharomyces pombe GN=dfr1; Solyc06g060570.2.1 genomic_reference:SL2.40ch06 gene_region:34963712-34966535 transcript_region:SL2.40ch06:34963712..34966535+ functional_description:"Ovarian cancer-associated gene 2 protein homolog (AHRD V1 **-- B5X7T4_SALSA); contains Interpro domain(s) IPR005645 Protein of unknown function DUF341 " 1 4 6 19 opLeV0100000985 sgn|U213019 AGCAAGCTTTGTTGGTACACCAATAAGTTCTGGCCAGATTAGTTTTCCTTTGCAGAAAGATTCAGATTCC Experimental SGN-U578474 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|124119|sp|P05118|ICI1_SOLLC (e_value=4e-38) RecName:; (*SWP) sp|P05118|ICI1_SOLLC (e_value=3e-39) Wound-induced proteinase inhibitor 1 OS=Solanum lycopersicum GN=PIIF; Solyc09g084490.2.1 genomic_reference:SL2.40ch09 gene_region:64538262-64539947 transcript_region:SL2.40ch09:64538262..64539947+ go_terms:GO:0009611 functional_description:"Proteinase inhibitor I (AHRD V1 ***- Q53X28_SOLTU); contains Interpro domain(s) IPR000864 Proteinase inhibitor I13, potato inhibitor I " 1 8 10 19 opLeV0100000986 sgn|U213939 GATCCCGTTGATTGGTGTGATATTTTGGTGGCCTGGCTTTTATTATTGGTCGAGGAGGGCAGCTGATACA Experimental SGN-U578813 Tomato 200607#2 [45 ESTs aligned] (*GB) gi|118489093|gb|ABK96353.1| (e_value=0) unknown; (*ATH) AT3G52950.1 (e_value=0) | Symbol: None | CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein, contains Pfam profiles: PF00571 CBS domain, PF00564: PB1 domain | chr3:19645474-19647797 FORWARD | Aliases: F8J2.120; (*SWP) sp|O13965|MUG70_SCHPO (e_value=5e-36) Meiotically up-regulated gene 70 protein OS=Schizosaccharomyces pombe GN=mug70; \N \N 1 4 10 19 opLeV0100000987 sgn|U221752 ATCTTTTCAAGAAGATGGCAAGCAGCCAACTTGTCCTGATCGTTTCGTTGCTCCTTGCATTAGCTGTTCC Experimental SGN-U566316 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157351223|emb|CAO41410.1| (e_value=1e-55) unnamed; (*ATH) AT5G05500.1 (e_value=2e-51) | Symbol: None | pollen Ole e 1 allergen and extensin family protein, contains Pfam domain, PF01190: Pollen proteins Ole e I family | chr5:1629668-1630397 FORWARD | Aliases: MOP10.4, MOP10_4; \N \N 1 8 14 19 opLeV0100000988 sgn|U223198 TTCCAAAGTAACAAAGTTTGAAGCATGTGGAGGAACTATGGAGCTTCTGCTGATTCATTTTATCAGGTCC Experimental SGN-U563414 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|157337967|emb|CAO39011.1| (e_value=4e-170) unnamed; (*ATH) AT5G54780.1 (e_value=3e-172) Symbol: None | similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:At4g27100.1); similar to putative GTPase activating protein [Oryza sativa (japonica cultivar-group)] (GB:XP_468334.1); contains InterPro domain RabGAP/TBC do... ; (*SWP) sp|Q8TC07|TBC15_HUMAN (e_value=9e-27) TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15; \N \N 1 4 14 19 opLeV0100000989 sgn|U223111 GTTGGCTCCATGCTTATCTTCCTTACTCTCTCGCTCAGCGGATGAAATCGCTCGACAGGTTATATACACT Experimental SGN-U566973 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157345087|emb|CAO71815.1| (e_value=1e-121) unnamed; (*ATH) AT4G39820.1 (e_value=2e-113) | Symbol: None | expressed protein | chr4:18476001-18477937 REVERSE | Aliases: T5J17.8; (*SWP) sp|Q8K2L8|TTC15_MOUSE (e_value=4e-29) Tetratricopeptide repeat protein 15 OS=Mus musculus GN=Ttc15; Solyc05g051840.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61386178-61387311 transcript_region:SL2.40ch05:61386178..61387311+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 15 (AHRD V1 **-- B6TY66_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical " 3 8 6 19 opLeV0100000990 sgn|U222594 ATTCAATTGTCAATGGAGGTGAAGCAACGAAAGTTCCCATTTTGCCCTCTGGTATCATCATAAGTCCCGA Experimental SGN-U563794 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157347741|emb|CAO22197.1| (e_value=8e-47) unnamed; (*ATH) AT1G73360.1 (e_value=1e-39) Symbol: None | homeobox-leucine zipper family protein / lipid-binding START domain-containing protein, protodermal factor2 (GI:14276060) (Arabidopsis thaliana); similar to homeobox protein GI:1173621 from ( Phalaenopsis sp.) | chr1:27582357-27586182... ; (*SWP) sp|Q9FX31|HDG11_ARATH (e_value=1e-38) Homeobox-leucine zipper protein HDG11 OS=Arabidopsis thaliana GN=HDG11; Solyc09g060130.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:53390808-53397345 transcript_region:SL2.40ch09:53390808..53397345- go_terms:GO:0003700,GO:0043565 functional_description:"Homeodomain-containing transcription factor FWA (AHRD V1 **-* B5BQ02_ARASU); contains Interpro domain(s) IPR002913 Lipid-binding START " 3 4 6 19 opLeV0100000991 sgn|U226737 CTTTAATAAAGCTCGAAATGAGAAGAAGACAGGTGGCAAGGTAGACTCACCACCAAAGGGTGACTCTGCA Experimental SGN-U575142 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157350984|emb|CAO41141.1| (e_value=5e-31) unnamed; (*ATH) AT2G04410.1 (e_value=2e-25) | Symbol: None | expressed protein | chr2:1533838-1535165 REVERSE | Aliases: T1O3.18, T1O3_18; Solyc07g045340.2.1 genomic_reference:SL2.40ch07 gene_region:55765795-55769600 transcript_region:SL2.40ch07:55765795..55769600- functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 *-*- D2J0U4_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 " 3 8 10 19 opLeV0100000992 sgn|U228353 TCGGAAATCAAGTTTTTGAATCAGATTCAGGGCCCGGAAAGTATCGCATTTGACCCGAAAGGTCGTGGGC Experimental SGN-U578492 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157343381|emb|CAO67432.1| (e_value=2e-88) unnamed; (*ATH) AT1G08470.1 (e_value=3e-84) | Symbol: None | strictosidine synthase family protein, similar to strictosidine synthase (Rauvolfia serpentina)(SP:P15324) | chr1:2682130-2684103 REVERSE | Aliases: T27G7.16, T27G7_16; (*SWP) sp|Q9D7N9|APMAP_MOUSE (e_value=1e-21) Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap; \N \N 3 4 10 19 opLeV0100000993 sgn|U220642 AGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGC Experimental SGN-U571286 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|15234769|ref|NP_194785.1| (e_value=6e-165) cyclic nucleotide-regulated ion channel, putative (CNGC9) [Arabidopsis thaliana]; (*ATH) AT4G30560.1 (e_value=4e-167) | Symbol: None | cyclic nucleotide-regulated ion channel, putative, similar to cyclic nucleotide and calmodulin-regulated ion channel cngc6 GI:4581207 from (Arabidopsis thaliana) | chr4:14926980-14929687 REVERSE | Aliases: F17I23.100, F17I23_100; (*SWP) sp|Q9M0A4|CNGC9_ARATH (e_value=4e-166) Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9; Solyc12g010010.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3144264-3150904 transcript_region:SL2.40ch12:3144264..3150904+ go_terms:GO:0016020 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding " 3 8 14 19 opLeV0100000994 sgn|U213929 AGATGAGTGCTACCTCGTCACTTTTGCCATGTAGTATCCTGCTTATGTGCAAACTTATTGAGAAGTAACA Experimental SGN-U571535 Tomato 200607#2 [65 ESTs aligned] (*GB) gi|81075965|gb|ABB55386.1| (e_value=0) glucose-6-phosphate; (*ATH) AT5G40760.1 (e_value=0) Symbol: G6PD6 | Encodes a cytosolic glucose-6-phosphate dehydrogenase that is insensitive to reduction by DTT and whose mRNA is expressed ubiquitously. | chr5:16327976-16332002 FORWARD | Aliases: K1B16.1, K1B16_1, G6PD6, GLUCOSE-6-PHOSPHATE DEHYDROG... ; (*SWP) sp|P37830|G6PD_SOLTU (e_value=0) Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform OS=Solanum tuberosum GN=G6PDH; Solyc02g093830.2.1 genomic_reference:SL2.40ch02 gene_region:49113784-49119691 transcript_region:SL2.40ch02:49113784..49119691+ go_terms:GO:0004345 functional_description:"Glucose-6-phosphate 1-dehydrogenase (AHRD V1 **** Q2XTC4_SOLTU); contains Interpro domain(s) IPR001282 Glucose-6-phosphate dehydrogenase " 3 4 14 19 opLeV0100000995 sgn|U216950 AGGCCGTCGGGAACTGATGGCTCTGATTTCTCCTACCGCATGGTCGTTGATTCAAGATACACGAAAGTTG Experimental SGN-U583405 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|157351685|emb|CAO42674.1| (e_value=6e-38) unnamed; (*ATH) AT5G51510.1 (e_value=1e-28) | Symbol: None | expressed protein | chr5:20938659-20940204 FORWARD | Aliases: K17N15.6, K17N15_6; Solyc11g006880.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:1417654-1420489 transcript_region:SL2.40ch11:1417654..1420489- functional_description:"Genomic DNA chromosome 5 TAC clone K17N15 (AHRD V1 **-- Q9FHN3_ARATH); contains Interpro domain(s) IPR009787 Protein of unknown function DUF1352 " 1 8 8 19 opLeV0100000996 sgn|U216846 GGAGGAGTCGCCGTTATGGAGTAACAACAATCTCTGTTGGATTTAGCAGGTTCCCTCATCCTGCATTTCT Experimental SGN-U578202 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|76160931|gb|ABA40429.1| (e_value=2e-74) unknown; (*ATH) AT3G06040.1 (e_value=2e-44) | Symbol: None | ribosomal protein L12 family protein, contains similarity to 50S ribosomal protein L12-C, chloroplast precursor GB:P36212 from (Arabidopsis thaliana) | chr3:1824382-1825646 REVERSE | Aliases: F24F17.2, F24F17_2; \N \N 1 4 8 19 opLeV0100000997 sgn|U218943 AGCCGACGCGATAAATTCTACCACAGCTTGGAATGATTAGCATCAATGGTCCGAGTTCCAAACAGTTTGG Experimental SGN-U577487 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157339583|emb|CAO44124.1| (e_value=1e-22) unnamed; (*ATH) AT2G25670.2 (e_value=2e-22) | Symbol: None | expressed protein | chr2:10935742-10938135 REVERSE | Aliases: None; Solyc08g067880.2.1 genomic_reference:SL2.40ch08 gene_region:54139828-54142777 transcript_region:SL2.40ch08:54139828..54142777- functional_description:"M355 (AHRD V1 *-*- Q7XA59_LILLO)" 1 8 12 19 opLeV0100000998 sgn|U212594 GTGGTTATTCCAATGATAGGTATTACATCCATTGTGATGCTGCATTATATGGGCTAATTGTCCCCTTCAT Experimental SGN-U577190 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|1706319|sp|P54772|DCHS_SOLLC (e_value=2e-120) RecName:; (*ATH) AT1G43710.1 (e_value=2e-104) Symbol: EMB1075 | serine decarboxylase, identical to serine decarboxylase (Arabidopsis thaliana) GI:15011302; contains Pfam profile PF00282: Pyridoxal-dependent decarboxylase conserved domain | chr1:16488760-16490824 REVERSE | Aliases: F2J6.7, F2J6_... ; (*SWP) sp|P54772|DCHS_SOLLC (e_value=1e-121) Histidine decarboxylase OS=Solanum lycopersicum GN=HDC; Solyc08g066220.2.1 genomic_reference:SL2.40ch08 gene_region:51900799-51904475 transcript_region:SL2.40ch08:51900799..51904475+ go_terms:GO:0019752,GO:0030170 functional_description:"Decarboxylase family protein (AHRD V1 *-*- A7GHE9_CLOBL); contains Interpro domain(s) IPR002129 Pyridoxal phosphate-dependent decarboxylase " 1 4 12 19 opLeV0100000999 sgn|U223542 GTTTGAAGGTATGTTGTTGTCCGTGTTATTTTCCCGTGTCTCGAGCTGTCCCATAGAAGTACTTCGAGAA Experimental SGN-U583316 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157350007|emb|CAO39906.1| (e_value=3e-11) unnamed; Solyc01g006810.2.1 genomic_reference:SL2.40ch01 gene_region:1374684-1378253 transcript_region:SL2.40ch01:1374684..1378253+ go_terms:GO:0008270 functional_description:"RING-H2 zinc finger protein (Fragment) (AHRD V1 *-*- A1IW10_9LAMI); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type " 1 8 16 19 opLeV0100001000 sgn|U222201 GATACGGGGATAGGAATTACACCACAGGATATTCCCAACCTGTTTAGCAAGTTTACACAAAGCCAAGCGC Experimental SGN-U578092 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|22095659|sp|Q41342|ETR1_SOLLC (e_value=0) RecName:; (*ATH) AT1G66340.1 (e_value=0) | Symbol: None | ethylene receptor 1 (ETR1), identical to GB:P49333 from (Arabidopsis thaliana) (Science 262 (5133), 539-544 (1993)) | chr1:24737827-24741029 FORWARD | Aliases: T27F4.9, T27F4_9; (*SWP) sp|Q41342|ETR1_SOLLC (e_value=0) Ethylene receptor 1 OS=Solanum lycopersicum GN=ETR1; Solyc12g011330.2.1 genomic_reference:SL2.40ch12 gene_region:4164579-4175035 transcript_region:SL2.40ch12:4164579..4175035+ go_terms:GO:0051740 functional_description:"Ethylene receptor (Fragment) (AHRD V1 **** C0KTA0_9ROSA); contains Interpro domain(s) IPR014525 Signal transduction histidine kinase, hybrid-type, ethylene sensor " 1 4 16 19 opLeV0100001001 sgn|U230332 TATCTCAGGAACAAAACCAGAAAACGGCTATCTGGCTAGTTCCTCCTCTGGACATCGTAGCGCAAATGAG Experimental SGN-U582293 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147838249|emb|CAN76598.1| (e_value=6e-122) hypothetical; (*ATH) AT2G03890.2 (e_value=3e-100) Symbol: None | phosphatidylinositol 3- and 4-kinase family protein, low similarity to phosphatidylinositol 4-kinase type-II beta (Homo sapiens) GI:20159767; contains Pfam profile PF00454: Phosphatidylinositol 3- and 4-kinase | chr2:1185522-1188542 F... ; Solyc04g005270.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:196342-198264 transcript_region:SL2.40ch04:196342..198264- go_terms:GO:0004428 functional_description:"Phosphatidylinositol kinase (AHRD V1 *-** D0MQD8_PHYIN); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic " 3 8 8 19 opLeV0100001002 sgn|U231674 GTCTAGGGCCGCTCTCGCTGTTCATTATGGACTTTCTTCACTTCAGGTTTTCAGGAAGCTCACAACACTT Experimental SGN-U565487 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|16754852|emb|CAD10687.1| (e_value=0) Narf-like protein [Medicago truncatula]; (*ATH) AT4G16440.1 (e_value=1e-164) | Symbol: None | iron hydrogenase family protein, contains Pfam profiles: PF02906 Iron only hydrogenase large subunit, C-terminal domain, PF02256 Iron hydrogenase small subunit | chr4:9269286-9271532 REVERSE | Aliases: DL4245C, FCAALL.367; (*SWP) sp|Q54F30|NARFL_DICDI (e_value=3e-113) Nuclear prelamin A recognition factor-like protein OS=Dictyostelium discoideum GN=narfl; Solyc08g065990.2.1 genomic_reference:SL2.40ch08 gene_region:51647637-51653346 transcript_region:SL2.40ch08:51647637..51653346+ go_terms:GO:0008901,GO:0005521 functional_description:"Cytosolic Fe-S cluster assembly factor NAR1 (AHRD V1 ***- NAR1_YARLI); contains Interpro domain(s) IPR009016 Iron hydrogenase " 3 4 8 19 opLeV0100001003 sgn|U215186 GGAGGCTACTGCAATGGAATGGCCCCAGCTTACCAGCAAGCTTACTACCGATAGACATAACATGAATCTA Experimental SGN-U575732 Tomato 200607#2 [48 ESTs aligned] (*GB) gi|157336486|emb|CAO71171.1| (e_value=0) unnamed; (*ATH) AT3G22440.1 (e_value=2e-166) | Symbol: None | hydroxyproline-rich glycoprotein family protein, identical to hydroxyproline-rich glycoprotein (Arabidopsis thaliana) gi:9293881:dbj:BAB01784 | chr3:7959761-7962207 FORWARD | Aliases: MCB17.3; Solyc09g076050.2.1 genomic_reference:SL2.40ch09 gene_region:63235327-63238938 transcript_region:SL2.40ch09:63235327..63238938+ functional_description:"FRIGIDA (Fragment) (AHRD V1 *--- B0Z034_ARALP); contains Interpro domain(s) IPR012474 Frigida-like " 3 8 12 19 opLeV0100001004 sgn|U214553 TGTCAACTACCTCTCTTAGCTCCAACATATAACAGATGGAGGCTCCGGTTTGGAGGCATTGCAGAAGAGA Experimental SGN-U578893 Tomato 200607#2 [35 ESTs aligned] (*GB) gi|3255941|emb|CAA07470.1| (e_value=8e-165) PP1A protein [Catharanthus roseus]; (*ATH) AT2G39840.1 (e_value=9e-159) Symbol: None | serine/threonine protein phosphatase PP1 isozyme 4 (TOPP4) / phosphoprotein phosphatase 1, identical to SP:P48484 Serine/threonine protein phosphatase PP1 isozyme 4 (EC 3.1.3.16) {Arabidopsis thaliana}, phosphoprotein phosphatase 1 GI... ; (*SWP) sp|P48489|PP1_ORYSJ (e_value=2e-159) Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000; \N \N 3 4 12 19 opLeV0100001005 sgn|U225750 ACCTTTGTTATGGGCTTTGGTCCAATCCCAAATATCCTCTGCTCTGAGATATTTCCCACCAGCGTTCGTG Experimental SGN-U576801 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|115445159|ref|NP_001046359.1| (e_value=4e-44) Os02g0229400; (*ATH) AT4G35300.1 (e_value=9e-44) | Symbol: None | transporter-related, low similarity to hexose transporter (Solanum tuberosum) GI:8347246; contains Pfam profile PF00083: major facilitator superfamily protein | chr4:16796261-16799558 REVERSE | Aliases: F23E12.140, F23E12_140; (*SWP) sp|Q8LPQ8|MSSP2_ARATH (e_value=8e-43) Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2; Solyc03g032040.2.1 genomic_reference:SL2.40ch03 gene_region:8835772-8840159 transcript_region:SL2.40ch03:8835772..8840159+ go_terms:GO:0015519 functional_description:"MFS family major facilitator transporter D-xylose cation symporter (AHRD V1 *-** D4E1S5_SEROD); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter " 3 8 16 19 opLeV0100001006 sgn|U219140 CGTTTCCCCAGCTCGAAACACTTGTTATAAAAAGGTGTAACCACCTCAAGGAGATCCCCCTTAGCTTTGC Experimental SGN-U596955 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15418713|gb|AAG31016.1| (e_value=7e-55) tospovirus resistance protein D [Lycopersicon esculentum]; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=4e-12) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16; \N \N 3 4 16 19 opLeV0100001007 sgn|U219837 CAAAGGCTCGGAGTCGTTCGGCTTCCTTAGGGTCGATCACGCACTCGGGAGGAGGGACCTTGTACCTGGT Experimental SGN-U575874 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|13560781|gb|AAK30204.1|AF349963_1 (e_value=8e-60) endoxyloglucan; (*ATH) AT1G14720.1 (e_value=5e-52) Symbol: None | xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (XTR2), identical to endoxyloglucan transferase (Arabidopsis thaliana) GI:5533311 | chr1:5066631-5068629 REVERSE | Aliases: F10B6.12, ... ; (*SWP) sp|Q38909|XTH28_ARATH (e_value=5e-51) Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28; Solyc01g005120.2.1 genomic_reference:SL2.40ch01 gene_region:104191-107414 transcript_region:SL2.40ch01:104191..107414- go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 13 (AHRD V1 **** C0IRH2_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase " 1 7 6 19 opLeV0100001008 sgn|U216079 AACATAAAATACCATTTTGACCCAATGCCTGTTCGACAACTTCGTTGCTGGTTAAAGGAACTCTCTGATT Experimental SGN-U592621 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|83283989|gb|ABC01902.1| (e_value=3e-47) putative; (*ATH) AT2G44120.2 (e_value=2e-31) | Symbol: None | 60S ribosomal protein L7 (RPL7C) | chr2:18256118-18257784 REVERSE | Aliases: None; (*SWP) sp|P60039|RL73_ARATH (e_value=2e-30) 60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C; Solyc03g117060.2.1 genomic_reference:SL2.40ch03 gene_region:60374016-60378796 transcript_region:SL2.40ch03:60374016..60378796- go_terms:GO:0042803 functional_description:"60S ribosomal protein L7-like protein (AHRD V1 ***- B3TM16_ELAGV); contains Interpro domain(s) IPR005998 Ribosomal protein L7, eukaryotic " 1 3 6 19 opLeV0100001009 sgn|U236964 GAGATTGAGATATAATGAGGATTGTCTGCAAGGTCTTAAGTTGAAGACTTTCATCAGTCATTTCACCGTG Experimental SGN-U604019 Tomato 200607#2 [1 ESTs aligned] Solyc09g018340.2.1 genomic_reference:SL2.40ch09 gene_region:14484996-14489495 transcript_region:SL2.40ch09:14484996..14489495+ functional_description:"Protein MON2 homolog (AHRD V1 **-- MON2_HUMAN)" 1 7 10 19 opLeV0100001010 sgn|U218573 GAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGT Experimental SGN-U575170 Tomato 200607#2 [40 ESTs aligned] (*GB) gi|171854593|dbj|BAG16487.1| (e_value=0) succinic; (*ATH) AT1G79440.1 (e_value=0) Symbol: None | succinate-semialdehyde dehydrogenase (SSADH1), similar to succinate-semialdehyde dehydrogenase (NADP+) (SSDH) (Escherichia coli) SWISS-PROT:P25526; identical to succinic semialdehyde dehydrogenase mRNA, nuclear gene encoding mitochond... ; (*SWP) sp|Q9SAK4|SSDH_ARATH (e_value=0) Succinate-semialdehyde dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=ALDH5F1; Solyc09g090700.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:65491141-65492709 transcript_region:SL2.40ch09:65491141..65492709- go_terms:GO:0004777 functional_description:"Succinate semialdehyde dehydrogenase (AHRD V1 **** B6TPI6_MAIZE); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase " 1 3 10 19 opLeV0100001011 sgn|U229510 GTCCGAGTTCATCATGAACTCTTATCTTTTCCTTGAATTTACAGAGATTCGTAAAGGCTTGATTCCCCTT Experimental SGN-U576161 Tomato 200607#2 [2 ESTs aligned] \N \N 1 7 14 19 opLeV0100001012 sgn|U232145 TATATACTTAATTTTAACATGAGGCCAGAAATCTCTAACGTTCTTCTGTACCTCGGCCCCGAGGTGCCCC Experimental SGN-U579816 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|461979|sp|Q01413|E13B_SOLLC (e_value=6e-71) RecName:; (*ATH) AT4G16260.1 (e_value=6e-39) | Symbol: None | glycosyl hydrolase family 17 protein, similar to glucan endo-1,3-beta-glucosidase, basic vacuolar isoform precursor SP:P52407 from (Hevea brasiliensis) | chr4:9200025-9201544 REVERSE | Aliases: DL4170C, FCAALL.386; (*SWP) sp|Q01413|E13B_SOLLC (e_value=4e-72) Glucan endo-1,3-beta-glucosidase B OS=Solanum lycopersicum; Solyc01g060020.2.1 genomic_reference:SL2.40ch01 gene_region:62224181-62226272 transcript_region:SL2.40ch01:62224181..62226272- go_terms:GO:0005975 functional_description:"Beta-glucanase (AHRD V1 ***- Q53X08_NICPL); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 " 1 3 14 19 opLeV0100001013 sgn|U215386 GAAGGTCTTCACTGGAATTTGAGGAAGACGCAATCTTTTGATGGCCCTCGTGAGACGTGATCATCTCTAC Experimental SGN-U566478 Tomato 200607#2 [30 ESTs aligned] (*GB) gi|157337541|emb|CAO21887.1| (e_value=0) unnamed; (*ATH) AT3G21070.2 (e_value=0) | Symbol: None | ATP-NAD kinase family protein, contains Pfam domain, PF01513: ATP-NAD kinase | chr3:7379805-7383980 REVERSE | Aliases: None; (*SWP) sp|Q56YN3|NADK1_ARATH (e_value=0) NAD(H) kinase 1 OS=Arabidopsis thaliana GN=NADK1; Solyc01g008560.2.1 genomic_reference:SL2.40ch01 gene_region:2656473-2664287 transcript_region:SL2.40ch01:2656473..2664287- go_terms:GO:0042736,GO:0005516,GO:0003951 functional_description:"NAD kinase 1 (AHRD V1 **** B6SWV6_MAIZE); contains Interpro domain(s) IPR002504 ATP-NAD/AcoX kinase " 3 7 6 19 opLeV0100001014 sgn|U213748 CTGAATGTTGGGACGACCCTATGAGTTTCAAGCCCGAGAGGTTTCTTGGCTCGAAATTGGACGTGAAGGG Experimental SGN-U580161 Tomato 200607#2 [41 ESTs aligned] (*GB) gi|584865|sp|P37122|C76A2_SOLME (e_value=0) Cytochrome; (*ATH) AT3G52970.1 (e_value=1e-111) | Symbol: None | cytochrome P450 family protein, cytochrome P450 76A2, eggplant, PIR:S38534 | chr3:19652284-19654254 REVERSE | Aliases: F8J2.140; (*SWP) sp|P37122|C76A2_SOLME (e_value=0) Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2; Solyc10g083690.2.1 genomic_reference:SL2.40ch10 gene_region:62789549-62791479 transcript_region:SL2.40ch10:62789549..62791479+ go_terms:GO:0020037,GO:0055114 functional_description:"Cytochrome P450" 3 3 6 19 opLeV0100001015 sgn|U217771 AAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATA Experimental SGN-U577143 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|4038592|emb|CAA71421.1| (e_value=0) RNA-directed RNA polymerase [Lycopersicon esculentum]; (*ATH) AT1G14790.1 (e_value=0) | Symbol: None | RNA-dependent RNA polymerase, putative, similar to RNA-directed RNA polymerase GB:CAA09697 GI:4138282 (Nicotiana tabacum) | chr1:5093409-5098027 REVERSE | Aliases: F10B6.19, F10B6_19; (*SWP) sp|O14227|RDR1_SCHPO (e_value=6e-92) RNA-dependent RNA polymerase 1 OS=Schizosaccharomyces pombe GN=rdr1; Solyc05g007510.2.1 genomic_reference:SL2.40ch05 gene_region:2062303-2071146 transcript_region:SL2.40ch05:2062303..2071146- go_terms:GO:0003968 functional_description:"RNA-dependent RNA polymerase (AHRD V1 **** C1I213_NICGU); contains Interpro domain(s) IPR007855 RNA-dependent RNA polymerase, eukaryotic-type " 3 7 10 19 opLeV0100001016 sgn|U216445 CCAGTGGTGCAGCGGCTGGAAGAAGTTTAGTACAGGGTTGATAGAAAATC Experimental SGN-U564987 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|560504|emb|CAA82710.1| (e_value=2e-12) guanine nucleotide regulatory protein [Vicia faba]; (*ATH) AT5G47520.1 (e_value=5e-14) | Symbol: None | Ras-related GTP-binding protein, putative, similar to GTP-binding protein RAB11J GI:1370160 from (Lotus japonicus) | chr5:19294588-19295593 REVERSE | Aliases: MNJ7.11, MNJ7_11; \N \N 3 3 10 19 opLeV0100001017 sgn|U222452 AGTGTAAATGCAAATGGAAAAATCTTGTTACGCGTTATAAGGGATGTGAGACAGTTGAACCGGAAGCTCT Experimental SGN-U572980 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157356209|emb|CAO50136.1| (e_value=2e-48) unnamed; (*ATH) AT5G01380.1 (e_value=3e-42) | Symbol: None | expressed protein | chr5:155638-157521 REVERSE | Aliases: T10O8.90, T10O8_90; Solyc09g005560.2.1 genomic_reference:SL2.40ch09 gene_region:386228-387708 transcript_region:SL2.40ch09:386228..387708- functional_description:"Zinc finger and SCAN domain containing 29 (Predicted) (AHRD V1 *--- A9X1B1_PAPAN); contains Interpro domain(s) IPR017877 MYB-like " 3 3 14 19 opLeV0100001018 sgn|U215088 GATGTCATATATGGAGTTGCTCATCAACATACAGGAGGGACTGGTATGGCACTCCATGGAGAGGATGGAC Experimental SGN-U577766 Tomato 200607#2 [46 ESTs aligned] (*GB) gi|52550577|gb|AAU14999.2| (e_value=4e-142) MtN19-like; (*ATH) AT5G61820.1 (e_value=1e-134) | Symbol: None | expressed protein, MtN19, Medicago truncatula, EMBL:MTY15367 | chr5:24851544-24853917 REVERSE | Aliases: MAC9.6, MAC9_6; Solyc12g042380.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43016137-43018348 transcript_region:SL2.40ch12:43016137..43018348+ functional_description:"MtN19-like protein (AHRD V1 ***- Q64EX4_PEA); contains Interpro domain(s) IPR011692 Stress up-regulated Nod 19 " 1 7 8 19 opLeV0100001019 sgn|U217231 ACCCTACAGGGGGTGGAACCAAATCTCAATCTAAATTGCACTTCTACTCTCTACTACCCACACCTGTGCT Experimental SGN-U565775 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157355612|emb|CAO49429.1| (e_value=5e-161) unnamed; (*ATH) AT5G23870.1 (e_value=1e-146) | Symbol: None | pectinacetylesterase family protein, contains Pfam profile: PF03283 pectinacetylesterase | chr5:8046196-8050178 REVERSE | Aliases: MRO11.9, MRO11_9; (*SWP) sp|Q6P988|NOTUM_HUMAN (e_value=3e-12) Protein notum homolog OS=Homo sapiens GN=NOTUM; Solyc03g025600.2.1 genomic_reference:SL2.40ch03 gene_region:7376053-7384703 transcript_region:SL2.40ch03:7376053..7384703+ go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase " 1 3 8 19 opLeV0100001020 sgn|U235001 AGTTAGGATCCCTAACCTAGGGTTGAAATCTTCCCCAAAAAATATCAAAGATCCCAACTACCCTCAGTAC Experimental SGN-U587979 Tomato 200607#2 [1 ESTs aligned] \N \N 1 7 12 19 opLeV0100001021 sgn|U230608 TCATCAGCAGCTTAAGAAGGCTGCCCCTAAAGAGGGACAACAAGTTTTGTGCTAGATTTTGCTTTCCTTA Experimental SGN-U586396 Tomato 200607#2 [2 ESTs aligned] \N \N 1 3 12 19 opLeV0100001022 sgn|U223439 CTCTTTTGCTAGCTGTTTGGCAAAAGCTCAAACGTGGTAGGGCCTATGAGAAGGGGAATTGTGTTGTTTT Experimental SGN-U563132 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157344782|emb|CAO70537.1| (e_value=9e-11) unnamed; (*ATH) AT1G02100.3 (e_value=3e-12) Symbol: None | leucine carboxyl methyltransferase family protein, contains Pfam PF04072: Leucine carboxyl methyltransferase domain; similar to Leucine carboxyl methyltransferase (Protein-leucine O- methyltransferase) (CGI-68) (SP:Q9UIC8) {Homo sapie... ; \N \N 1 7 16 19 opLeV0100001023 sgn|U215220 CAATGGCTAACTTGATGCATGGATTCAATTGGAAATTAGGAGGAGATACGAAGCCAGAAGATATAAGCAT Experimental SGN-U570074 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|85068614|gb|ABC69387.1| (e_value=4e-89) CYP92B2v3; (*ATH) AT2G40890.1 (e_value=3e-60) | Symbol: None | cytochrome P450 98A3, putative (CYP98A3), identical to Cytochrome P450 98A3 (SP:O22203) (Arabidopsis thaliana); similar to gi:17978651 from Pinus taeda | chr2:17065131-17067730 REVERSE | Aliases: T20B5.9, T20B5_9; (*SWP) sp|O22203|C98A3_ARATH (e_value=2e-59) Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CYP98A3; Solyc04g071800.2.1 genomic_reference:SL2.40ch04 gene_region:56397978-56399942 transcript_region:SL2.40ch04:56397978..56399942+ go_terms:GO:0019825 functional_description:"Cytochrome P450" 1 3 16 19 opLeV0100001024 sgn|U218532 CTACTTTTCTGGGTCAGAACAAACTCCGTTTCAGGAATCAGAATGTGTCAATGCCAGGCAAAACCAGTGG Experimental SGN-U585208 Tomato 200607#2 [28 ESTs aligned] (*GB) gi|118483001|gb|ABK93412.1| (e_value=0) unknown; (*ATH) AT4G33680.1 (e_value=0) Symbol: None | aminotransferase class I and II family protein, low similarity to Aromatic Aminotransferase from Pyrococcus horikoshii GP:14278621; contains Pfam profile PF00155 aminotransferase, classes I and II | chr4:16171697-16174681 REVERSE | Al... ; (*SWP) sp|Q93ZN9|DAPAT_ARATH (e_value=0) LL-diaminopimelate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=DAP; Solyc06g073280.2.1 genomic_reference:SL2.40ch06 gene_region:41539950-41545003 transcript_region:SL2.40ch06:41539950..41545003+ go_terms:GO:0010285,GO:0005507 functional_description:"LL-diaminopimelate aminotransferase (AHRD V1 **** A8IW39_CHLRE); contains Interpro domain(s) IPR019942 LL-diaminopimelate aminotransferase, plant-related " 3 7 8 19 opLeV0100001025 sgn|U213812 TGCCACTATCATGGGAAGTCGGAATGGGCATGCTCCACTTTTCCTTTGGTACACTCTGAACAGAAAAGGG Experimental SGN-U584469 Tomato 200607#2 [78 ESTs aligned] (*GB) gi|147815605|emb|CAN70523.1| (e_value=0) hypothetical; (*ATH) AT1G43710.1 (e_value=0) Symbol: EMB1075 | serine decarboxylase, identical to serine decarboxylase (Arabidopsis thaliana) GI:15011302; contains Pfam profile PF00282: Pyridoxal-dependent decarboxylase conserved domain | chr1:16488760-16490824 REVERSE | Aliases: F2J6.7, F2J6_... ; (*SWP) sp|P54772|DCHS_SOLLC (e_value=2e-140) Histidine decarboxylase OS=Solanum lycopersicum GN=HDC; Solyc04g071140.2.1 genomic_reference:SL2.40ch04 gene_region:55663674-55668653 transcript_region:SL2.40ch04:55663674..55668653+ go_terms:GO:0006468,GO:0019752,GO:0030170 functional_description:"Decarboxylase family protein (AHRD V1 ***- B1ILJ6_CLOBK); contains Interpro domain(s) IPR002129 Pyridoxal phosphate-dependent decarboxylase " 3 3 8 19 opLeV0100001026 sgn|U221636 CCTGACGCTATGAATCACCCAAATTTCCCTTCTACAATTGTGACTCCAGGGAAGGCCTACATTCACAAAA Experimental SGN-U572315 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|15824565|gb|AAL09397.1|AF307094_1 (e_value=4e-166) non-cell-autonomous; (*ATH) AT5G15140.1 (e_value=1e-108) Symbol: None | aldose 1-epimerase family protein, similar to SP:P05149 Aldose 1-epimerase precursor (EC 5.1.3.3) (Mutarotase) from Acinetobacter calcoaceticus; contains Pfam profile PF01263 Aldose 1-epimerase | chr5:4908689-4910673 FORWARD | Aliases... ; (*SWP) sp|Q9GKX6|GALM_PIG (e_value=9e-67) Aldose 1-epimerase OS=Sus scrofa GN=GALM; Solyc02g087780.2.1 genomic_reference:SL2.40ch02 gene_region:44655715-44658215 transcript_region:SL2.40ch02:44655715..44658215+ go_terms:GO:0005515,GO:0004034 functional_description:"Aldose-1-epimerase-like protein (AHRD V1 **** O48971_TOBAC); contains Interpro domain(s) IPR015443 Aldose-1-epimerase " 3 7 12 19 opLeV0100001027 sgn|U228055 TCAGGCTTATCGATCAATCGAATAATCAACACAGTTGTTGTTTGCAAATGTAGCATCATCAAGATTCATA Experimental SGN-U564654 Tomato 200607#2 [3 ESTs aligned] \N \N 3 3 12 19 opLeV0100001028 sgn|U222257 TTCACTCCGGCTAGAAGTGTATATTCAAAGGAAACCCTTCTTCTAGTTTCCAGGAAGTAGTCCCTGCAAT Experimental SGN-U568418 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157344284|emb|CAO69217.1| (e_value=8e-166) unnamed; (*ATH) AT2G39670.1 (e_value=2e-155) | Symbol: None | radical SAM domain-containing protein, similar to hypothetical protein PIR:S76698:S76698 contains Pfam profile PF04055: radical SAM domain protein | chr2:16541311-16544396 FORWARD | Aliases: F17A14.4, F17A14_4; (*SWP) sp|Q55880|Y098_SYNY3 (e_value=4e-89) UPF0063 protein sll0098 OS=Synechocystis sp. (strain PCC 6803) GN=sll0098; Solyc06g030580.2.1 genomic_reference:SL2.40ch06 gene_region:16518860-16520599 transcript_region:SL2.40ch06:16518860..16520599+ functional_description:"Ribosomal RNA large subunit methyltransferase N (AHRD V1 ***- D5A1S9_SPIPL)" 3 7 16 19 opLeV0100001029 sgn|U222521 AAGTATACTTTCATCACTCAAAAGAGATGGAGAGTTAGGACCCTGGAAGGTCTACCGCGTTATTGAAACT Experimental SGN-U569621 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|154268056|gb|ABS72112.1| (e_value=0) ankyrin; (*ATH) AT5G57740.1 (e_value=0) Symbol: None | zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) and Pfam profile: PF00023 ankyrin repeat | chr5:23411811-23414876 REVERSE | Alia... ; (*SWP) sp|Q99NH0|ANR17_MOUSE (e_value=2e-20) Ankyrin repeat domain-containing protein 17 OS=Mus musculus GN=Ankrd17; Solyc09g057920.2.1 genomic_reference:SL2.40ch09 gene_region:47851951-47865894 transcript_region:SL2.40ch09:47851951..47865894+ functional_description:"N-alpha-acetyltransferase 25, NatB auxiliary subunit (AHRD V1 *--- NAA25_RAT); contains Interpro domain(s) IPR019183 N-acetyltransferase B complex, non-catalytic subunit " 3 3 16 19 opLeV0100001030 sgn|U218194 GTTTGTCCATATCAGGAAACACCGATATGAGATGATCGATCGCCGACGGAGTCGTAAAGGATCGCGACGG Experimental SGN-U582581 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|118483552|gb|ABK93674.1| (e_value=2e-52) unknown; (*ATH) AT5G32440.1 (e_value=3e-67) | Symbol: None | expressed protein | chr5:12094126-12095787 FORWARD | Aliases: F18O9.50, F18O9_50; Solyc07g007960.2.1 genomic_reference:SL2.40ch07 gene_region:2649752-2657807 transcript_region:SL2.40ch07:2649752..2657807- functional_description:"CUE domain containing protein (AHRD V1 **-- B6TIC6_MAIZE); contains Interpro domain(s) IPR003892 Ubiquitin system component Cue " 2 8 6 19 opLeV0100001031 sgn|U224350 GCAAGGGATGGTAAAGGAAGGGGAGCAAGTAGCTCTTGTTCAGAGTGGCAGGCAGCCAATCTGGCGGCTC Experimental SGN-U578796 Tomato 200607#2 [47 ESTs aligned] (*GB) gi|147860666|emb|CAN81451.1| (e_value=0) hypothetical; (*ATH) AT5G52920.1 (e_value=0) | Symbol: None | pyruvate kinase, putative, similar to pyruvate kinase isozyme G, chloroplast precursor (Nicotiana tabacum) SWISS-PROT:Q40546 | chr5:21480769-21484043 FORWARD | Aliases: MXC20.15, MXC20_15; (*SWP) sp|Q40546|KPYG_TOBAC (e_value=0) Pyruvate kinase isozyme G, chloroplastic OS=Nicotiana tabacum; Solyc03g007810.2.1 genomic_reference:SL2.40ch03 gene_region:2363561-2372504 transcript_region:SL2.40ch03:2363561..2372504- go_terms:GO:0006096,GO:0003824 functional_description:"Pyruvate kinase (AHRD V1 ***- A5BTB0_VITVI); contains Interpro domain(s) IPR001697 Pyruvate kinase " 2 4 6 19 opLeV0100001032 sgn|U225420 GGACATCCAATGGCCAAATAAAAACATTCCGCGTGCATGACATGTTACATGAGTTCTGTACGCTCGAAGC Experimental SGN-U566827 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|83630761|gb|ABC26878.1| (e_value=2e-67) NRC1; (*ATH) AT3G46710.1 (e_value=4e-23) | Symbol: None | disease resistance protein (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. | chr3:17217474-17220017 REVERSE | Aliases: T6H20.260; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=4e-28) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17; Solyc03g005660.2.1 genomic_reference:SL2.40ch03 gene_region:469690-474293 transcript_region:SL2.40ch03:469690..474293+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein" 2 8 10 19 opLeV0100001033 sgn|U229812 TTCCGGGTCCCGACCCGAGTGCCGTAAAAGCTCCATGATTCGCTCCCCATGCTGACGTGTCCACATGACA Experimental SGN-U563265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|75220933|sp|Q40161|GP1_SOLLC (e_value=3e-66) RecName:; (*ATH) AT1G23760.1 (e_value=3e-64) Symbol: None | BURP domain-containing protein / polygalacturonase, putative, similar to polygalacturonase isoenzyme 1 beta subunit (Lycopersicon esculentum) GI:170480; contains Pfam profile PF03181: BURP domain | chr1:8402035-8404280 FORWARD | Alias... ; (*SWP) sp|Q40161|GP1_SOLLC (e_value=2e-67) Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1; Solyc05g005570.2.1 genomic_reference:SL2.40ch05 gene_region:407905-410949 transcript_region:SL2.40ch05:407905..410949+ go_terms:GO:0004650 functional_description:"BURP domain-containing protein (Fragment) (AHRD V1 *--- Q94IC5_9ROSI); contains Interpro domain(s) IPR004873 BURP " 2 4 10 19 opLeV0100001034 sgn|U225025 GGGGATCATGAGGCTGATGACGAGATGTCACCTCGAGAACCCATTAATCCTAACTCCATCCGAGATTTAA Experimental SGN-U565071 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157341179|emb|CAO49086.1| (e_value=1e-121) unnamed; (*ATH) AT3G26780.1 (e_value=4e-106) Symbol: None | phosphoglycerate/bisphosphoglycerate mutase family protein, similar to X4 protein GI:21386798, Y4 protein GI:21386800 from (Silene dioica); contains Pfam profiles PF00300: phosphoglycerate mutase family, PF01535: PPR repeat | chr3:98... ; Solyc02g094480.2.1 genomic_reference:SL2.40ch02 gene_region:49559379-49564221 transcript_region:SL2.40ch02:49559379..49564221- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase " 2 8 14 19 opLeV0100001035 sgn|U233116 CAAAATCATGGGAGGAACTAAATTCCCCCTAAGGGATACAGGCCTATGAAAAAAATTACTTTATCGGATG Experimental \N \N \N \N 4 8 6 19 opLeV0100001036 sgn|U224539 TTGGATGTTAAGTCCAAGACAATTCTTGGGTCGATATCATCGTTACGTAGCATTGCATGGTTCTTGAAGA Experimental SGN-U565388 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|71980110|gb|AAZ57336.1| (e_value=0) Avr9/Cf-9; (*ATH) AT5G37490.1 (e_value=6e-84) | Symbol: None | U-box domain-containing protein, similar to immediate-early fungal elicitor protein CMPG1 (Petroselinum crispum) GI:14582200; contains Pfam profile PF04564: U-box domain | chr5:14904708-14906281 FORWARD | Aliases: MPA22.3, MPA22_3; (*SWP) sp|Q5PNY6|PUB21_ARATH (e_value=5e-83) U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21; Solyc01g005160.2.1 genomic_reference:SL2.40ch01 gene_region:137781-139489 transcript_region:SL2.40ch01:137781..139489+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7MID4_ARALY); contains Interpro domain(s) IPR003613 U box domain " 4 4 6 19 opLeV0100001037 sgn|U226049 GCACTACAGATGAAGCAGAGCCATTCATGGGATCGGGTCGTTTTGCTCGAGCTTATTTACTGGGATATAA Experimental SGN-U576340 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157357236|emb|CAO63738.1| (e_value=1e-110) unnamed; (*ATH) AT5G45360.1 (e_value=1e-88) | Symbol: None | F-box family protein, similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 | chr5:18401778-18404010 REVERSE | Aliases: MFC19.2, MFC19_2; (*SWP) sp|Q9FHK0|FB284_ARATH (e_value=9e-88) F-box protein At5g45360 OS=Arabidopsis thaliana GN=At5g45360; Solyc08g075380.2.1 genomic_reference:SL2.40ch08 gene_region:56680117-56686385 transcript_region:SL2.40ch08:56680117..56686385- functional_description:"F-box protein (AHRD V1 ***- A9Z0N6_PONTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box " 4 8 10 19 opLeV0100001038 sgn|U213862 GCCAAATGCTGGTACTGTATGGAAGGTTTCTTCGCTAAAGCTAGTGGTGACGTTGATCCTCTCTATGGCA Experimental SGN-U580701 Tomato 200607#2 [90 ESTs aligned] (*GB) gi|157341291|emb|CAO49198.1| (e_value=0) unnamed; (*ATH) AT5G60920.1 (e_value=0) Symbol: None | phytochelatin synthetase, putative / COBRA cell expansion protein COB, putative, similar to phytochelatin synthetase GI:29570314; similar to GB:AAK56072; identified in Roudier, et al, Plant Phys. (2002) 130:538-548 (PMID:12376623); id... ; (*SWP) sp|Q94KT8|COBRA_ARATH (e_value=0) Protein COBRA OS=Arabidopsis thaliana GN=COB; Solyc02g065770.2.1 genomic_reference:SL2.40ch02 gene_region:31490287-31494371 transcript_region:SL2.40ch02:31490287..31494371- functional_description:"COBRA-like protein 4 (AHRD V1 ***- B6SST3_MAIZE); contains Interpro domain(s) IPR017391 COBRA-like " 4 4 10 19 opLeV0100001039 sgn|U217865 CTAGGCCGGTCCAGATTCTCACTCACTACTCAGGTCAGCACTTCTCTGTCTTCTACACGCACTTTTGCGT Experimental SGN-U582319 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|157347925|emb|CAO22512.1| (e_value=2e-95) unnamed; (*ATH) AT1G03220.1 (e_value=1e-60) | Symbol: None | extracellular dermal glycoprotein, putative / EDGP, putative, similar to extracellular dermal glycoprotein EDGP precursor (Daucus carota) GI:285741 | chr1:787122-788651 FORWARD | Aliases: F15K9.17, F15K9_17; (*SWP) sp|Q8RVH5|7SBG2_SOYBN (e_value=5e-27) Basic 7S globulin 2 OS=Glycine max; Solyc09g065000.2.1 genomic_reference:SL2.40ch09 gene_region:58274475-58276687 transcript_region:SL2.40ch09:58274475..58276687- go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ4_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 " 4 8 14 19 opLeV0100001040 sgn|U226043 ACCCAATAAGCTGCCTTTTCTAAATCTAGAACCCAGAAATTCAAAATCGTGCCTCCGCACCCACAAACAT Experimental SGN-U565536 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157340391|emb|CAO46068.1| (e_value=2e-99) unnamed; (*ATH) AT1G15410.1 (e_value=1e-78) Symbol: None | aspartate-glutamate racemase family, contains Pfam profile PF:01177 Aspartate-glutamate racemase family; contains TIGRFAM TIGR00035: aspartate racemase; similar to aspartate racemase (GI:5458794){Pyrococcus abyssi} | chr1:5298939-5300... ; Solyc03g116460.2.1 genomic_reference:SL2.40ch03 gene_region:59932809-59936469 transcript_region:SL2.40ch03:59932809..59936469- go_terms:GO:0008152 functional_description:"Aspartate racemase (AHRD V1 ***- D4XDK3_9BURK); contains Interpro domain(s) IPR001920 Asp/Glu racemase " 4 4 14 19 opLeV0100001041 sgn|U228257 GGGTATTTGGGCATGAAACGGTCATGAACCCTGGTTTCTGGCTAGGGAAGCCACATGGAGAGATAACCTT Experimental SGN-U571801 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157356642|emb|CAO62837.1| (e_value=4e-48) unnamed; (*ATH) AT1G63700.1 (e_value=2e-22) | Symbol: None | protein kinase, putative, contains protein kinase domain, Pfam:PF00069; similar to MEK kinase (MAP3Ka) (Arabidopsis thaliana) gi:4204912:gb:AAD10848 | chr1:23628871-23632694 REVERSE | Aliases: F24D7.11, F24D7_11; Solyc08g081210.2.1 genomic_reference:SL2.40ch08 gene_region:61435787-61442377 transcript_region:SL2.40ch08:61435787..61442377- go_terms:GO:0016301 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 2 8 8 19 opLeV0100001042 sgn|U216872 TGCATATGAATTGGAATGATGGCAATGGCAATGGGTATGGGTAGATTTGATGAATTTGCTACTGGCATTT Experimental SGN-U569780 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|183604855|gb|ACC64525.1| (e_value=2e-33) GAGA-binding; (*ATH) AT2G01930.1 (e_value=1e-18) | Symbol: None | expressed protein | chr2:427120-428796 REVERSE | Aliases: F23I14.2, F23I14_2; Solyc04g008380.2.1 genomic_reference:SL2.40ch04 gene_region:2015697-2018738 transcript_region:SL2.40ch04:2015697..2018738- go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 ***- D7KCI3_ARALY); contains Interpro domain(s) IPR010409 GAGA binding-like " 2 4 8 19 opLeV0100001043 sgn|U223348 AGTTGTTGGAAGCATTGTAATGGTGGAGGCACAGTCATGGACTACAAGAAGGGGAAGCAATCCAAGATTG Experimental SGN-U576336 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|157357120|emb|CAO63614.1| (e_value=6e-147) unnamed; (*ATH) AT1G12500.1 (e_value=4e-124) Symbol: None | phosphate translocator-related, low similarity to glucose-6-phosphate/phosphate-translocator precursor (Zea mays) GI:2997589, phosphoenolpyruvate/phosphate translocator precursor (Mesembryanthemum crystallinum) GI:9295275, SP:P21727:C... ; (*SWP) sp|Q550W6|FUCT1_DICDI (e_value=3e-16) GDP-fucose transporter 1 OS=Dictyostelium discoideum GN=slc35c1; Solyc08g079790.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60425501-60426571 transcript_region:SL2.40ch08:60425501..60426571- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* B6TX95_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 " 2 8 12 19 opLeV0100001044 sgn|U227545 AGTTTTGGGAAACTTGCCCATGATTTGGTCATGCGCATGCAAAAGATAGATGGCGACAACTATCCAGAGA Experimental SGN-U580505 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157352761|emb|CAO44576.1| (e_value=4e-122) unnamed; (*ATH) AT3G24840.1 (e_value=7e-111) Symbol: None | SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative, similar to phosphatidylinositol transfer-like protein IV (GI:14486707) (Lotus japonicus); similar to SEC14 CYTOSOLIC FACTOR (PHOSPHATIDYLINOSITOL/ PHOSPHA... ; (*SWP) sp|Q10137|SEC14_SCHPO (e_value=1e-29) Sec14 cytosolic factor OS=Schizosaccharomyces pombe GN=sec14; Solyc09g060090.2.1 genomic_reference:SL2.40ch09 gene_region:53165275-53173182 transcript_region:SL2.40ch09:53165275..53173182- go_terms:GO:0005622 functional_description:"SEC14 cytosolic factor family protein (AHRD V1 **-- D7KN07_ARALY); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal " 2 4 12 19 opLeV0100001045 sgn|U231495 TCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTGGTTACAGCTTCATATAGTGCTGCGAGTGGTC Experimental SGN-U576844 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|152955225|emb|CAM59673.1| (e_value=2e-90) parvulin-type; (*ATH) AT5G19370.1 (e_value=1e-71) Symbol: None | rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein, low similarity to MPT-synthase sulfurylase (Synechococcus sp. PCC 7942) GI:2950364; contains Pfam profiles PF00581: Rhodanese-like domain, PF00639:... ; (*SWP) sp|Q5WZN0|SURA_LEGPL (e_value=1e-11) Chaperone surA OS=Legionella pneumophila (strain Lens) GN=surA; Solyc12g099800.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65135132-65139096 transcript_region:SL2.40ch12:65135132..65139096- go_terms:GO:0016853 functional_description:"Rhodanese-like domain containing protein (AHRD V1 *--- B1XHS0_SYNP2); contains Interpro domain(s) IPR001763 Rhodanese-like " 2 8 16 19 opLeV0100001046 sgn|U216183 AAAGAGCTGATTTACAGGGAGGGTCTTGCATTTAATCCCGAATACCAGCACATGTGAGTACTCGCTCGTT Experimental SGN-U576602 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|30171843|gb|AAP20420.1| (e_value=0) mitogen-activated protein kinase 2 [Lycopersicon esculentum]; (*ATH) AT2G43790.1 (e_value=0) Symbol: None | mitogen-activated protein kinase, putative / MAPK, putative (MPK6), identical to mitogen-activated protein kinase homolog 6 (AtMPK6)(Arabidopsis thaliana) SWISS-PROT:Q39026; PMID:12119167 | chr2:18145439-18148065 FORWARD | Aliases: F1... ; (*SWP) sp|Q40532|NTF4_TOBAC (e_value=0) Mitogen-activated protein kinase homolog NTF4 OS=Nicotiana tabacum GN=NTF4; Solyc08g014420.2.1 genomic_reference:SL2.40ch08 gene_region:4354487-4377242 transcript_region:SL2.40ch08:4354487..4377242+ go_terms:GO:0008339 functional_description:"Mitogen-activated protein kinase 2 (AHRD V1 **** Q84MI5_SOLLC); contains Interpro domain(s) IPR008351 JNK MAP kinase " 2 4 16 19 opLeV0100001047 sgn|U234756 TCCCTTCTCGAATTCCGTGCATATAGCGAGATATTTAGTGGACTGATCGATCAAAAGTTCGCACTAAGAG Experimental SGN-U594515 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|20149050|gb|AAM12780.1| (e_value=5e-28) auxin-induced SAUR-like protein [Capsicum annuum]; (*ATH) AT2G21220.1 (e_value=3e-23) | Symbol: None | auxin-responsive protein, putative, similar to auxin-induced protein TGSAUR22 (GI:10185820) (Tulipa gesneriana) | chr2:9096407-9096894 FORWARD | Aliases: F7O24.6, F7O24_6; (*SWP) sp|P33080|AX10A_SOYBN (e_value=1e-12) Auxin-induced protein X10A OS=Glycine max; \N \N 4 8 8 19 opLeV0100001048 sgn|U237497 AGCTCAGGACAGTCACACCAATCGACTAGGCCAGCTGTTAGTGGTGACACTACGCCTCGGCCTTTTCCTA Experimental SGN-U604135 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157359026|emb|CAO66928.1| (e_value=2e-40) unnamed; (*ATH) AT2G13620.1 (e_value=1e-39) | Symbol: None | cation/hydrogen exchanger, putative (CHX15), monovalent cation:proton antiporter family 2 (CPA2) member, PMID:11500563 | chr2:5685088-5687703 FORWARD | Aliases: T10F5.16, T10F5_16; Solyc08g016160.2.1 genomic_reference:SL2.40ch08 gene_region:6867711-6871990 transcript_region:SL2.40ch08:6867711..6871990- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger " 4 4 8 19 opLeV0100001049 sgn|U216373 TGCTCTTGGTGACGTTGGGTGGTACTGCATTAGAGGAATTTTGTGGGCTGCAGATTACGAGCTTCCCAAA Experimental SGN-U567720 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|147858660|emb|CAN80430.1| (e_value=1e-144) hypothetical; (*ATH) AT4G09670.1 (e_value=3e-126) Symbol: None | oxidoreductase family protein, similar to AX110P (Daucus carota) GI:285739; contains Pfam profiles PF01408: Oxidoreductase family NAD-binding Rossmann fold, PF02894: Oxidoreductase family C-terminal alpha/beta domain | chr4:6107147-61... ; (*SWP) sp|Q9SZ83|Y4967_ARATH (e_value=3e-125) Uncharacterized oxidoreductase At4g09670 OS=Arabidopsis thaliana GN=At4g09670; Solyc12g056800.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48236269-48238946 transcript_region:SL2.40ch12:48236269..48238946+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Oxidoreductase family protein (AHRD V1 ***- D7LXC3_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain " 4 8 12 19 opLeV0100001050 sgn|U216519 CGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCA Experimental SGN-U579021 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|147770366|emb|CAN78153.1| (e_value=2e-73) hypothetical; (*ATH) AT5G55940.1 (e_value=1e-70) | Symbol: EMB2731 | expressed protein, contains Pfam PF03665: Uncharacterised protein family (UPF0172) | chr5:22672658-22675274 REVERSE | Aliases: MYN21.5, MYN21_5, EMB2731, EMBRYO DEFECTIVE 2731; (*SWP) sp|Q9FG71|U172_ARATH (e_value=1e-69) UPF0172 protein At5g55940 OS=Arabidopsis thaliana GN=EMB2731; Solyc07g009160.2.1 genomic_reference:SL2.40ch07 gene_region:4204055-4210261 transcript_region:SL2.40ch07:4204055..4210261+ go_terms:GO:0005515 functional_description:"Neighbor of COX4 (AHRD V1 ***- D3PHS4_9MAXI); contains Interpro domain(s) IPR005366 Uncharacterised protein family UPF0172 " 4 8 16 19 opLeV0100001051 sgn|U230912 CAGCCACAAAGAGGGAAGCATCCGGTGTTACTGTCTACGGAGTAGCACAGTGTGCTGAAAGCATAACGGA Experimental SGN-U584161 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|147858923|emb|CAN82890.1| (e_value=8e-62) hypothetical; (*ATH) AT1G70530.1 (e_value=5e-17) | Symbol: None | protein kinase family protein, contains Pfam domain, PF00069: Protein kinase domain | chr1:26592413-26595042 REVERSE | Aliases: F24J13.10, F24J13_10; (*SWP) sp|Q9CAL2|CRK3_ARATH (e_value=4e-16) Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3; Solyc11g011880.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4818939-4822147 transcript_region:SL2.40ch11:4818939..4822147- go_terms:GO:0004702 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain" 4 4 16 19 opLeV0100001052 sgn|U214153 GCATCGTGAAGTAATCGTCATGTCACGTAACATACAATTCTTGAACTCCCCCACACCTGAGCTCAGACTG Experimental SGN-U565588 Tomato 200607#2 [113 ESTs aligned] (*GB) gi|125606|sp|P22200|KPYC_SOLTU (e_value=0) Pyruvate kinase, cytosolic isozyme; (*ATH) AT5G08570.1 (e_value=0) | Symbol: None | pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Glycine max) SWISS-PROT:Q42806 | chr5:2778001-2780442 FORWARD | Aliases: MAH20.13, MAH20_13; (*SWP) sp|P22200|KPYC_SOLTU (e_value=0) Pyruvate kinase, cytosolic isozyme OS=Solanum tuberosum; Solyc04g008740.2.1 genomic_reference:SL2.40ch04 gene_region:2398964-2404186 transcript_region:SL2.40ch04:2398964..2404186- go_terms:GO:0004743 functional_description:"Pyruvate kinase (AHRD V1 **** Q3S1N4_SOLTU); contains Interpro domain(s) IPR001697 Pyruvate kinase " 2 7 6 19 opLeV0100001053 sgn|U217517 GAGGCAAGGCCAAGGTAATGTTGTTGTTGGGGTCCTTACACCAAATGTCTCTGACAAGGATAATACTCCT Experimental SGN-U579721 Tomato 200607#2 [26 ESTs aligned] (*GB) gi|19401142|gb|AAL87543.1|AF293343_1 (e_value=3e-164) KAP-2; (*ATH) AT1G48050.1 (e_value=0) Symbol: None | Ku80 family protein, identical to Ku80-like protein (Arabidopsis thaliana) GI:12006422; contains Pfam profiles: PF02197 Regulatory subunit of type II PKA R-subunit, PF02735: Ku70/Ku80 beta-barrel domain, PF03731: Ku70/Ku80 N-terminal ... ; (*SWP) sp|Q7RX73|KU80_NEUCR (e_value=1e-40) Protein Ku80 OS=Neurospora crassa GN=ku80; Solyc01g091350.2.1 genomic_reference:SL2.40ch01 gene_region:76753032-76759212 transcript_region:SL2.40ch01:76753032..76759212- go_terms:GO:0003691 functional_description:"ATP-dependent DNA helicase 2 subunit KU80 (AHRD V1 **-* KU80_ARATH); contains Interpro domain(s) IPR016194 Spen Paralogue and Orthologue C-terminal-like " 2 3 6 19 opLeV0100001054 sgn|U218120 ACCTCCTAAGCGTGCGCAACGTGCTACGGACCAAGATAGAACATTCATTCCCGATTCTACAAGTTTTGGA Experimental SGN-U585710 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157350220|emb|CAO40158.1| (e_value=1e-166) unnamed; (*ATH) AT2G47210.1 (e_value=5e-153) | Symbol: None | myb family transcription factor, contains Pfam profile: PF00249 myb DNA-binding domain | chr2:19385939-19389478 FORWARD | Aliases: T8I13.5; (*SWP) sp|Q9NPF5|DMAP1_HUMAN (e_value=2e-38) DNA methyltransferase 1-associated protein 1 OS=Homo sapiens GN=DMAP1; Solyc01g079210.2.1 genomic_reference:SL2.40ch01 gene_region:70807853-70815294 transcript_region:SL2.40ch01:70807853..70815294+ go_terms:GO:0003714 functional_description:"SWR1-complex protein 4 (AHRD V1 *--- A8NYM2_COPC7); contains Interpro domain(s) IPR001005 SANT, DNA-binding " 2 7 10 19 opLeV0100001055 sgn|U220027 AGAAGCACGGAGAATGGGTGACTATCGGGACATATTAAGCCTCACTAGGGTTCTTGTGCACGGCCCTGAG Experimental SGN-U566215 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|30695529|ref|NP_191760.2| (e_value=5e-143) expressed protein [Arabidopsis thaliana]; (*ATH) AT3G62010.1 (e_value=3e-145) | Symbol: None | expressed protein | chr3:22975652-22982754 FORWARD | Aliases: F21F14.180; Solyc01g068610.2.1 genomic_reference:SL2.40ch01 gene_region:70202881-70220200 transcript_region:SL2.40ch01:70202881..70220200+ functional_description:"Metal ion binding protein (AHRD V1 **-- D7LSR9_ARALY)" 2 3 10 19 opLeV0100001056 sgn|U221264 GGCTAGTGATTGATGAATGAGAGCACAATGCTGTCTCTCGTAAATGGACCGGTGCACCACAAAGTAGACT Experimental SGN-U562851 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|15242626|ref|NP_201116.1| (e_value=0) histone deacetylase [Arabidopsis thaliana]; (*ATH) AT5G63110.1 (e_value=0) | Symbol: None | histone deacetylase, putative, similar to SP:O22446 Histone deacetylase (HD) {Arabidopsis thaliana}; contains Pfam profile PF00850: Histone deacetylase family | chr5:25332863-25335573 REVERSE | Aliases: MDC12.7, MDC12_7; (*SWP) sp|Q9FML2|HDA6_ARATH (e_value=0) Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6; Solyc06g071680.2.1 genomic_reference:SL2.40ch06 gene_region:40535499-40540003 transcript_region:SL2.40ch06:40535499..40540003- go_terms:GO:0003714 functional_description:"Histone deacetylase (AHRD V1 ***- B9I3D0_POPTR); contains Interpro domain(s) IPR003084 Histone deacetylase " 2 3 14 19 opLeV0100001057 sgn|U230577 GTAACAGCGATATGGATGAAGAAGAGGTTTTTCGTGGAAACATTAGTCGGAATTCTCCCGCCGGAGAAGG Experimental SGN-U570646 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157340344|emb|CAO46021.1| (e_value=9e-85) unnamed; (*ATH) AT1G52770.1 (e_value=1e-71) | Symbol: None | phototropic-responsive NPH3 family protein, contains NPH3 family domain, Pfam:PF03000 | chr1:19659507-19661402 FORWARD | Aliases: F14G24.4, F14G24_4; (*SWP) sp|Q9FMF5|RPT3_ARATH (e_value=5e-28) Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3; Solyc03g119960.2.1 genomic_reference:SL2.40ch03 gene_region:62531674-62533441 transcript_region:SL2.40ch03:62531674..62533441- go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7L4V2_ARALY); contains Interpro domain(s) IPR004249 NPH3 " 4 7 6 19 opLeV0100001058 sgn|U225236 GCAGTGACCGCGAACTCTGGCTCCTTTGTCCCTTCTAAATTGATCCAATATGCAGATTTACGCGGAATGA Experimental SGN-U567239 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|62241073|dbj|BAD93693.1| (e_value=4e-51) acyltransferase-like protein ACYL3a [Nicotiana tabacum]; (*ATH) AT3G26040.1 (e_value=1e-29) Symbol: None | transferase family protein, similar to deacetylvindoline 4-O-acetyltransferase (Catharanthus roseus)(GI:4091808)(PMID:9681034), alcohol acyltransferase (Fragaria x ananassa)(GI:10121328)(PMID:10810141) | chr3:9520978-9522307 FORWARD |... ; (*SWP) sp|Q9ZTK5|DAT_CATRO (e_value=2e-23) Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT; Solyc08g014490.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:4520981-4522291 transcript_region:SL2.40ch08:4520981..4522291- go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* Q70G33_TOBAC); contains Interpro domain(s) IPR003480 Transferase " 4 3 6 19 opLeV0100001059 sgn|U232108 TTATCTTTGGGAGGGATAGTAATGATCGTGATCGAGTTGATGGGGCCAGA Experimental SGN-U591228 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|148909114|gb|ABR17658.1| (e_value=2e-44) unknown; (*ATH) AT3G62290.1 (e_value=2e-46) Symbol: None | Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role i... ; (*SWP) sp|O48649|ARF1_SALBA (e_value=1e-45) ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1; \N \N 4 7 10 19 opLeV0100001060 sgn|U235705 AGTTTAGGCACATTTATAGAGGTACTCCCAGGAGGCATTTGTTAACGACTGGTTGGAGTAGTTTTGTGAA Experimental SGN-U601907 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157337508|emb|CAO21854.1| (e_value=3e-50) unnamed; (*ATH) AT4G30080.1 (e_value=2e-46) | Symbol: ARF16 | transcriptional factor B3 family protein, contains Pfam profile: PF02362 B3 DNA binding domain | chr4:14703233-14706342 REVERSE | Aliases: F6G3.110, F6G3_110, ARF16, AUXIN RESPONSE FACTOR 16; (*SWP) sp|Q9AV47|ARFV_ORYSJ (e_value=4e-48) Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22; Solyc11g069500.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51188434-51191569 transcript_region:SL2.40ch11:51188434..51191569- go_terms:GO:0046982,GO:0005516 functional_description:"Auxin response factor 16 (AHRD V1 ***- D9IVB4_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor " 4 3 10 19 opLeV0100001061 sgn|U221366 GGGTTTTTCCAGGTGATAAATCACGGTGTGTCGAAGAAGGTGATAGATGAAATGTTAGGGGTAAGTCATG Experimental SGN-U576121 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157353666|emb|CAO46190.1| (e_value=4e-149) unnamed; (*ATH) AT5G24530.1 (e_value=3e-139) Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavanone 3-hydroxylase (Persea americana)(GI:727410); contains PF03171 2OG-Fe(II) oxygenase superfamily domain | chr5:8378836-8383404 FORWARD | Aliases: K18P6.6, K18P6_6... ; (*SWP) sp|Q06942|FL3H_MALDO (e_value=3e-57) Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica; Solyc06g073080.2.1 genomic_reference:SL2.40ch06 gene_region:41407861-41410818 transcript_region:SL2.40ch06:41407861..41410818- go_terms:GO:0045431 functional_description:"Flavonol synthase/flavanone 3-hydroxylase (AHRD V1 **-* FLS_PETHY); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase " 4 7 14 19 opLeV0100001062 sgn|U226227 CTGGATGAGCGAAGTACGAAGATGCTAAACCTCACTGTGCTACAGAGAATCGATCCGCGTATTGAGGAGA Experimental SGN-U582960 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157346169|emb|CAO15866.1| (e_value=4e-75) unnamed; (*ATH) AT1G08370.1 (e_value=5e-69) Symbol: None | hydroxyproline-rich glycoprotein family protein, contains proline-rich extensin domains, INTERPRO:IPR002965; contains some similarity to transcription factor (Danio rerio) gi:15617376, emb:CAC69871; similar to yeast dcp1 | chr1:263819... ; (*SWP) sp|Q9SJF3|DCP1_ARATH (e_value=5e-68) mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370; Solyc09g010300.2.1 genomic_reference:SL2.40ch09 gene_region:3673362-3681783 transcript_region:SL2.40ch09:3673362..3681783- go_terms:GO:0050072,GO:0042803 functional_description:"MRNA decapping enzyme (AHRD V1 *-*- Q45NB8_XENLA); contains Interpro domain(s) IPR010334 Dcp1-like decapping " 4 3 14 19 opLeV0100001063 sgn|U234115 GCATCACCTTCAGGTACTAAAGGAGACTGAGGGCAGCCCCGCATGTCGGTTCCATGGCCACAGTTATGGC Experimental SGN-U570027 Tomato 200607#2 [28 ESTs aligned] (*GB) gi|118487876|gb|ABK95760.1| (e_value=0) unknown; (*ATH) AT4G36195.1 (e_value=0) | Symbol: None | serine carboxypeptidase S28 family protein, contains Pfam PF05577: Serine carboxypeptidase S28 | chr4:17127116-17129934 FORWARD | Aliases: None; (*SWP) sp|Q9QXE5|TSSP_MOUSE (e_value=7e-42) Thymus-specific serine protease OS=Mus musculus GN=Prss16; Solyc03g033620.2.1 genomic_reference:SL2.40ch03 gene_region:9480412-9491781 transcript_region:SL2.40ch03:9480412..9491781+ go_terms:GO:0004185 functional_description:"Serine carboxypeptidase S28 family protein (AHRD V1 **-* D7MBN8_ARALY); contains Interpro domain(s) IPR008758 Peptidase S28 " 2 7 8 19 opLeV0100001064 sgn|U213063 TTTTCTCTCATTTTTCTCTTATACTCGCCTTACCCATGGCTCTACTCGTTGAGAAGACCACCTCTGGCCG Experimental SGN-U592858 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|81075407|gb|ABB55380.1| (e_value=5e-125) S-adenosyl-L-homocysteine; (*ATH) AT3G23810.1 (e_value=1e-114) Symbol: SAHH2 | adenosylhomocysteinase, putative / S-adenosyl-L-homocysteine hydrolase, putative / AdoHcyase, putative, strong similarity to SP:P50248:SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {... ; (*SWP) sp|P68172|SAHH_NICSY (e_value=3e-124) Adenosylhomocysteinase OS=Nicotiana sylvestris GN=SAHH; Solyc09g092390.2.1 genomic_reference:SL2.40ch09 gene_region:66849458-66851791 transcript_region:SL2.40ch09:66849458..66851791+ go_terms:GO:0004013 functional_description:"Adenosylhomocysteinase (AHRD V1 **** Q2XTD0_SOLTU); contains Interpro domain(s) IPR000043 S-adenosyl-L-homocysteine hydrolase " 2 3 8 19 opLeV0100001065 sgn|U214082 TGTTTATGACACTTTTCAAATTTAGTTTTGGACAAGGCATGGCTCCTTCTTCTGCTCCTTCTCCTTCCAA Experimental SGN-U579770 Tomato 200607#2 [3 ESTs aligned] Solyc12g007050.1.1 evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:1490152-1490726 transcript_region:SL2.40ch12:1490152..1490726- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009424 Protein of unknown function DUF1070 " 2 7 12 19 opLeV0100001066 sgn|U216363 TTGGAGGAGATGATGGGGAGATTATGGATGGCATGATGACAAGAAGTCGAGGTGAGATTCGACGTATGTG Experimental SGN-U569048 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|147786946|emb|CAN71135.1| (e_value=6e-178) hypothetical; (*ATH) AT3G62270.1 (e_value=2e-159) | Symbol: None | anion exchange family protein, contains similarity to anion exchanger 3, cardiac splice form - Rattus norvegicus, PIR:A42497 | chr3:23053259-23057023 REVERSE | Aliases: T17J13.230; (*SWP) sp|Q9M1P7|BOR2_ARATH (e_value=2e-158) Putative boron transporter 2 OS=Arabidopsis thaliana GN=At3g62270; Solyc01g057770.2.1 genomic_reference:SL2.40ch01 gene_region:56576301-56580082 transcript_region:SL2.40ch01:56576301..56580082+ go_terms:GO:0005452 functional_description:"AE family transporter anion exchange (AHRD V1 *--* A4RY02_OSTLU); contains Interpro domain(s) IPR003020 Bicarbonate transporter, eukaryotic " 2 3 12 19 opLeV0100001067 sgn|U225213 ATGTCACATCCTAATTCTATTCTGTGATAAGGTTCCCTGGTTCATAAACTCTAAGCTGACTGGTCATATC Experimental SGN-U575636 Tomato 200607#2 [5 ESTs aligned] \N \N 2 7 16 19 opLeV0100001068 sgn|U230748 ATAAGAAGGATCGCTGCGACTCAAAGGCTTGCAGGAATTGATATGATCAGTTGACTCCAAAACAACTAGT Experimental SGN-U574498 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|42567382|ref|NP_195157.2| (e_value=2e-43) expressed protein [Arabidopsis thaliana]; (*ATH) AT4G34310.1 (e_value=1e-45) | Symbol: None | expressed protein | chr4:16414117-16419732 FORWARD | Aliases: F10M10.80, F10M10_80; Solyc04g079280.2.1 genomic_reference:SL2.40ch04 gene_region:61384114-61390904 transcript_region:SL2.40ch04:61384114..61390904+ go_terms:GO:0005488 functional_description:"LipA and NB-ARC domain protein (AHRD V1 *--- B8NDK8_ASPFN); contains Interpro domain(s) IPR016024 Armadillo-type fold " 2 3 16 19 opLeV0100001069 sgn|U219998 GCAACTGCCTTGCCCGATTCAACCTATCACTGCTTCTGATATGTTCCAGTTTTGAGCTCTGCTGGTGTGA Experimental SGN-U567159 Tomato 200607#2 [30 ESTs aligned] (*GB) gi|3986151|dbj|BAA34938.1| (e_value=4e-58) rdLIP [Raphanus sativus]; (*ATH) AT3G62420.1 (e_value=2e-33) | Symbol: None | bZIP transcription factor family protein, similar to common plant regulatory factor 6 GI:9650826 from (Petroselinum crispum) | chr3:23102820-23103260 REVERSE | Aliases: T12C14.120; (*SWP) sp|P24068|OCS1_MAIZE (e_value=1e-19) Ocs element-binding factor 1 OS=Zea mays GN=OBF1; Solyc06g009640.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:3585368-3585802 transcript_region:SL2.40ch06:3585368..3585802- go_terms:GO:0043565,GO:0003700,GO:0046982 functional_description:"BZIP transcription factor (AHRD V1 **-* Q1HW69_CAPAN); contains Interpro domain(s) IPR011700 Basic leucine zipper " 4 7 8 19 opLeV0100001070 sgn|U214087 ATTCACAAATGATGATCATTCATGGATGACCAGAAAACGCCTTTCGTTTTCCACACTTCCTCAAAGTGTC Experimental SGN-U593188 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|493721|dbj|BAA06462.1| (e_value=3e-24) TED4 [Zinnia elegans]; (*ATH) AT1G48750.1 (e_value=5e-24) Symbol: None | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein, similar to TED4 (Zinnia elegans) GI:493721; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 | chr1:18039635-18040159 FORWARD | Aliase... ; (*SWP) sp|Q43681|NLTP_VIGUN (e_value=1e-21) Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata; \N \N 4 3 8 19 opLeV0100001071 sgn|U218425 TATTCCTGGTGATCTCAGTGCTTGTACTTCAGGTGGTGCTCCAGGTCCAAGTTCTGAAGGCTTGCCACCC Experimental SGN-U575965 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|147834849|emb|CAN68310.1| (e_value=1e-26) hypothetical; (*ATH) AT1G62790.2 (e_value=2e-19) | Symbol: None | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein, contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 | chr1:23256003-23257547 FORWARD | Aliases: None; Solyc08g007460.2.1 genomic_reference:SL2.40ch08 gene_region:2031768-2034424 transcript_region:SL2.40ch08:2031768..2034424+ go_terms:GO:0008289 functional_description:"Non-specific lipid-transfer protein (AHRD V1 -*** B9RGU5_RICCO); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor " 4 7 12 19 opLeV0100001072 sgn|U213396 CCAATGACTCTGGCGGAAATAACGATCCTCCAGTATCTTCAGCACCAGCATATTTAGGAGGAAATCAGGC Experimental SGN-U581117 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157339320|emb|CAO43861.1| (e_value=3e-103) unnamed; (*ATH) AT4G10720.1 (e_value=5e-34) | Symbol: None | ankyrin repeat family protein, contains Pfam domain, PF00023: Ankyrin repeat | chr4:6607875-6609354 FORWARD | Aliases: T12H20.11, T12H20_11; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=3e-24) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620; Solyc08g062360.2.1 genomic_reference:SL2.40ch08 gene_region:48169401-48171051 transcript_region:SL2.40ch08:48169401..48171051+ go_terms:GO:0015276 functional_description:"Ankyrin repeat protein (AHRD V1 **-- B1Q4U3_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin " 4 3 12 19 opLeV0100001073 sgn|U241109 TGTAATATCAGCTTAATCATGTTGCAGCGGTATGTTTCATGGATTCTATAGCCATTTCACCGCCTTAACT Experimental SGN-U583682 Tomato 200607#2 [5 ESTs aligned] \N \N 4 7 16 19 opLeV0100001074 sgn|U241121 CCATGGTAGAAGATATGTATCAACAAGAAGCCAAAGATGAAGATGAGAATAGCCAAAGCCAAAACAGTGG Experimental SGN-U569815 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|169647567|gb|ACA61780.1| (e_value=0) BIPINNATA; (*ATH) AT4G36870.2 (e_value=5e-120) Symbol: None | similar to BEL1-like homeobox 4 protein (BLH4) [Arabidopsis thaliana] (TAIR:At2g23760.1); similar to BEL1-like homeobox 4 protein (BLH4) [Arabidopsis thaliana] (TAIR:At2g23760.2); similar to BEL1-related homeotic protein 13 [Solanum t... ; (*SWP) sp|Q9SW80|BLH2_ARATH (e_value=5e-119) BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana GN=BLH2; Solyc02g089940.2.1 genomic_reference:SL2.40ch02 gene_region:46203178-46209064 transcript_region:SL2.40ch02:46203178..46209064+ go_terms:GO:0005515,GO:0003677 functional_description:"BEL1-like homeodomain protein 2 (AHRD V1 **-- BLH2_ARATH); contains Interpro domain(s) IPR006563 POX " 4 3 16 19 opLeV0100001075 sgn|U227371 GTACTTTCCGGCCAATTTTTCTCGAAAGCCACGCTTTGGTAGCAACACAATTCGAGCTTCCGCCACCACA Experimental SGN-U586563 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|125604052|gb|EAZ43377.1| (e_value=4e-52) hypothetical; (*ATH) AT4G32320.1 (e_value=3e-54) | Symbol: None | peroxidase family protein, similar to L-ascorbate peroxidase (Arabidopsis thaliana) gi:1523789:emb:CAA66925; contains Pfam profile PF00141: Peroxidase | chr4:15602727-15605348 FORWARD | Aliases: F10M6.50, F10M6_50; (*SWP) sp|Q8GY91|APX6_ARATH (e_value=3e-53) Putative L-ascorbate peroxidase 6 OS=Arabidopsis thaliana GN=APX6; Solyc08g059760.2.1 genomic_reference:SL2.40ch08 gene_region:42440077-42446002 transcript_region:SL2.40ch08:42440077..42446002- go_terms:GO:0004130,GO:0005247 functional_description:"Peroxidase 40 (AHRD V1 **** PER40_ARATH); contains Interpro domain(s) IPR002207 Plant ascorbate peroxidase " 1 4 17 19 opLeV0100001076 sgn|U235417 ACACCCCGCAGGATTTAGCTCAAGCCGCGGTGAAAATTACCCTTTCTCGAGCAGGTAAAGCGTCTGGGTT Experimental SGN-U579172 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157342485|emb|CAO65197.1| (e_value=3e-52) unnamed; (*ATH) AT5G20740.1 (e_value=6e-43) Symbol: None | invertase/pectin methylesterase inhibitor family protein, low similarity to pectinesterase from Arabidopsis thaliana SP:Q42534, Lycopersicon esculentum SP:Q43143; contains Pfam profile PF04043: Plant invertase/pectin methylesterase in... ; (*SWP) sp|P17407|21KD_DAUCA (e_value=4e-31) 21 kDa protein OS=Daucus carota; Solyc07g042390.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:52852235-52852798 transcript_region:SL2.40ch07:52852235..52852798- go_terms:GO:0046910 functional_description:"Pectinesterase (AHRD V1 **** B7SIX2_9CONI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor " 1 8 1 18 opLeV0100001077 sgn|U216746 GATGCTCTTCCACACACTGATGTGTCTACTGAGGTATTTGAGGCAGTGGTGCCAGAGTCAATTGAGTCTA Experimental SGN-U571951 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|157360330|emb|CAO69541.1| (e_value=8e-83) unnamed; (*ATH) AT5G53440.1 (e_value=3e-61) | Symbol: None | expressed protein | chr5:21700905-21705196 REVERSE | Aliases: MYN8.5, MYN8_5; \N \N 1 4 1 18 opLeV0100001078 sgn|U224705 TTACAAGTTCTTGAAGACCTTGGCCTTAACGTACTTGAAGCTAGGGTTTCTTGCACCGACACCTTTCGTT Experimental SGN-U574126 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157351278|emb|CAO41465.1| (e_value=4e-45) unnamed; (*ATH) AT2G40435.1 (e_value=2e-38) | Symbol: None | expressed protein | chr2:16893902-16895716 FORWARD | Aliases: T2P4.23; Solyc06g050840.2.1 genomic_reference:SL2.40ch06 gene_region:30164049-30165645 transcript_region:SL2.40ch06:30164049..30165645+ go_terms:GO:0030528 functional_description:"DNA binding protein (AHRD V1 ***- B4FLH1_MAIZE)" 1 8 5 18 opLeV0100001079 sgn|U212943 CGCTGCCGCAACCGCATCCCGCACCCAACCACAACCAAGAAGCCCAATTC Experimental SGN-U573973 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|197260357|gb|ACH56716.1| (e_value=6e-31) beta-glucosidase; (*ATH) AT3G46570.1 (e_value=2e-20) | Symbol: None | glycosyl hydrolase family 17 protein, similar to glucan endo-1,3-beta-glucosidase precursor SP:P52409 from (Triticum aestivum) | chr3:17156782-17157852 REVERSE | Aliases: F12A12.90; (*SWP) sp|P52409|E13B_WHEAT (e_value=6e-18) Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1; \N \N 1 4 5 18 opLeV0100001080 sgn|U218019 GGGAGGAAGAAACATCGTCAAACACTACTTTCCCCTCTAATCGAGGGAGGACTGAAAGGAGGTAGCATTT Experimental SGN-U581309 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157349542|emb|CAO24760.1| (e_value=1e-92) unnamed; (*ATH) AT2G02880.1 (e_value=6e-93) | Symbol: None | mucin-related, similar to putative mucin GI:18071389 (Oryza sativa) | chr2:841260-843359 FORWARD | Aliases: T17M13.5, T17M13_5; (*SWP) sp|Q40163|PSBR_SOLLC (e_value=2e-11) Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR; Solyc01g010570.2.1 genomic_reference:SL2.40ch01 gene_region:5581068-5585872 transcript_region:SL2.40ch01:5581068..5585872- functional_description:"Mucin-like protein (Fragment) (AHRD V1 ***- B0FSK5_9MAGN)" 3 8 17 19 opLeV0100001081 sgn|U217244 TGGAGTCCATGCATAAGGAAGTTCAACGAGGAAGGGCTGCTATCGACTACGAAAAAAAGATGCACACCAG Experimental \N \N \N \N 3 4 17 19 opLeV0100001082 sgn|U220485 ATGAAGGAGTATCCATTCCAAGCCAACGTAGGTATGTCAAATATTGGGAGAATGCACTAATTTCCTATAC Experimental SGN-U585969 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|30693398|ref|NP_198756.2| (e_value=8e-78) PTEN -related protein [Arabidopsis thaliana]; (*ATH) AT5G39400.1 (e_value=7e-80) | Symbol: None | pollen specific phosphatase, putative / phosphatase and tensin, putative (PTEN1), identical to phosphatase and tensin homolog (Arabidopsis thaliana) GI:21535746 | chr5:15783265-15785472 FORWARD | Aliases: MUL8.8, MUL8_8; (*SWP) sp|P60484|PTEN_HUMAN (e_value=1e-36) Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN OS=Homo sapiens GN=PTEN; Solyc03g013310.2.1 genomic_reference:SL2.40ch03 gene_region:4068151-4071026 transcript_region:SL2.40ch03:4068151..4071026- go_terms:GO:0016314 functional_description:"Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN (AHRD V1 *--* PTEN_DICDI); contains Interpro domain(s) IPR014020 Tensin phosphatase, C2 domain " 3 8 1 18 opLeV0100001083 sgn|U222842 TACACTGCTGGACTTCGCCGAAGAGACGGTCGTACAGTTGGACTAGGTCTCTAAGGACTTGCCTTGAACA Experimental SGN-U581546 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|3023752|sp|Q43517|FER1_SOLLC (e_value=3e-49) RecName:; (*ATH) AT3G56720.1 (e_value=1e-38) | Symbol: None | expressed protein | chr3:21022032-21024398 FORWARD | Aliases: T8M16.50; (*SWP) sp|Q43517|FER1_SOLLC (e_value=2e-50) Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33; Solyc12g020000.1.1 evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:12863185-12872133 transcript_region:SL2.40ch12:12863185..12872133- functional_description:"Arginine/serine-rich coiled-coil protein 2 (AHRD V1 *-*- RSRC2_DANRE)" 3 8 5 18 opLeV0100001084 sgn|U218026 GCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGA Experimental SGN-U587443 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118489660|gb|ABK96631.1| (e_value=7e-48) unknown; (*ATH) AT5G15460.2 (e_value=2e-40) | Symbol: None | expressed protein | chr5:5018774-5020656 REVERSE | Aliases: None; (*SWP) sp|Q8LCS8|MUB2_ARATH (e_value=2e-39) Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana GN=MUB2; Solyc02g088620.2.1 genomic_reference:SL2.40ch02 gene_region:45229936-45232755 transcript_region:SL2.40ch02:45229936..45232755- functional_description:"Membrane-anchored ubiquitin-fold protein 1 (AHRD V1 ***- D7LAJ7_ARALY); contains Interpro domain(s) IPR017000 Membrane-anchored ubiquitin-fold protein, HCG-1 " 3 4 5 18 opLeV0100001085 sgn|U229301 TGAAGAGAATAATTGGGATGGTGAAACTAGTGCGCCATGCCCTGGAAGTTCCTTTGCATTGCATGATGCT Experimental SGN-U591102 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|62132629|gb|AAX69064.1| (e_value=2e-59) monoterpene; (*ATH) AT3G25810.1 (e_value=7e-38) | Symbol: None | myrcene/ocimene synthase, putative, similar to GI:9957293; contains Pfam profile: PF01397 terpene synthase family | chr3:9432042-9435081 FORWARD | Aliases: K13N2.7; (*SWP) sp|O81192|BPPS_SALOF (e_value=1e-35) (+)-bornyl diphosphate synthase, chloroplastic OS=Salvia officinalis; Solyc01g105870.2.1 genomic_reference:SL2.40ch01 gene_region:85651702-85655605 transcript_region:SL2.40ch01:85651702..85655605+ go_terms:GO:0034768,GO:0050551 functional_description:"(E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain " 1 8 19 19 opLeV0100001086 sgn|U241529 CGGCACGAGGGGGTTACAAAGTTGAACTAGTATAATACATAATTATGGGGTTATCATGTTTTTCTCTTGG Experimental SGN-U568659 Tomato 200607#2 [2 ESTs aligned] \N \N 1 4 19 19 opLeV0100001087 sgn|U217365 TGCAAGGACAGACGAGTTTGTCCAAGATCAGCAGTGGCGGATACCAAGCAGTTGGGATGCCTTATGGCAT Experimental SGN-U586147 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|157339702|emb|CAO44243.1| (e_value=2e-147) unnamed; (*ATH) AT4G32285.2 (e_value=2e-142) Symbol: None | similar to epsin N-terminal homology (ENTH) domain-containing protein [Arabidopsis thaliana] (TAIR:At2g25430.1); similar to putative clathrin assembly protein [Oryza sativa (japonica cultivar-group)] (GB:AAV25008.1); contains InterPro... ; (*SWP) sp|Q8S9J8|CAP1_ARATH (e_value=6e-141) Putative clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285; Solyc08g059660.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:41665374-41667284 transcript_region:SL2.40ch08:41665374..41667284- go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein like (AHRD V1 *--* Q6AXI5_DANRE); contains Interpro domain(s) IPR011417 ANTH " 1 8 3 18 opLeV0100001088 sgn|U225099 GAAGAGTGAGAGTTTTGCTGAAGCGGGAAGATGGAACTCCTTACAACCCTGTCATTCCTTCACGGAAACA Experimental SGN-U576775 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157336223|emb|CAO70908.1| (e_value=1e-47) unnamed; (*ATH) AT1G48160.1 (e_value=3e-44) Symbol: None | signal recognition particle 19 kDa protein, putative / SRP19, putative, similar to signal recognition particle 19 kDa protein subunit SRP19 GI:624221 (Oryza sativa (japonica cultivar-group)); contains Pfam profile: PF01922 SRP19 prote... ; (*SWP) sp|Q943Z6|SRP19_ARATH (e_value=3e-43) Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19; Solyc08g082740.2.1 genomic_reference:SL2.40ch08 gene_region:62596504-62603237 transcript_region:SL2.40ch08:62596504..62603237- go_terms:GO:0048500 functional_description:"Signal recognition particle protein (AHRD V1 *-*- C1C4T3_RANCA); contains Interpro domain(s) IPR002778 Signal recognition particle, SRP19 subunit " 1 4 3 18 opLeV0100001089 sgn|U213144 GTTCCTCCATTTTTAAGCCACCATTACAGAACCCAAGAAAAAGGGCCCAAAAATATGAAGCACATAGCCA Experimental SGN-U567539 Tomato 200607#2 [66 ESTs aligned] (*GB) gi|94958151|gb|ABF47216.1| (e_value=3e-169) cathepsin; (*ATH) AT4G01610.1 (e_value=5e-138) | Symbol: None | cathepsin B-like cysteine protease, putative, similar to cathepsin B-like cysteine proteinase GI:609175 from (Nicotiana rustica); contains an unusually short, 5nt exon | chr4:694695-697126 FORWARD | Aliases: T15B16.17, T15B16_17; (*SWP) sp|Q5R6D1|CATB_PONAB (e_value=1e-68) Cathepsin B OS=Pongo abelii GN=CTSB; Solyc02g069090.2.1 genomic_reference:SL2.40ch02 gene_region:33631872-33638685 transcript_region:SL2.40ch02:33631872..33638685- go_terms:GO:0030984 functional_description:"Cathepsin B (AHRD V1 ***- Q1HER6_NICBE); contains Interpro domain(s) IPR015643 Peptidase C1A, cathepsin B " 1 8 7 18 opLeV0100001090 sgn|U214043 TGTGCATAGCAGGCGCTTAGTGCACCGAGCTGTCTAGATATCTTACATCTCATAAACTAGTCATGTTTAG Experimental SGN-U574332 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|24745927|dbj|BAC23045.1| (e_value=6e-70) monooxygenase [Solanum tuberosum]; (*ATH) AT4G38540.1 (e_value=3e-35) | Symbol: None | monooxygenase, putative (MO2), identical to GI:3426064 | chr4:18023173-18025021 FORWARD | Aliases: F20M13.100, F20M13_100; \N \N 1 4 7 18 opLeV0100001091 sgn|U239365 CCCCCGTGGCCGGTGGGGGGAAACAAGGCTAAACCTTTCCCCATCAAATTTCGGCCCCCCGGTGAACCTT Experimental SGN-U604835 Tomato 200607#2 [1 ESTs aligned] \N \N 3 8 19 19 opLeV0100001092 sgn|U219284 AAGCGAACTCCGGCGAGGCAATGAGTCGGCCATCCATGACAACCTTCTCCTCTCTTCTCCTTCCTTTTCT Experimental SGN-U573899 Tomato 200607#2 [2 ESTs aligned] Solyc08g044530.1.1 evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:33354188-33354892 transcript_region:SL2.40ch08:33354188..33354892+ functional_description:"Unknown Protein (AHRD V1)" 3 4 19 19 opLeV0100001093 sgn|U226011 CGCTATTCTGACCAGAGTCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAA Experimental SGN-U568127 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157341509|emb|CAO62064.1| (e_value=2e-124) unnamed; (*ATH) AT2G44150.1 (e_value=2e-116) Symbol: None | SET domain-containing protein (ASHH3), low similarity to huntingtin interacting protein 1 (Homo sapiens) GI:12697196; contains Pfam profile PF00856: SET domain; identical to cDNA ASH1-like protein 3 (ASHH3) partial cds GI:15488419 | c... ; (*SWP) sp|Q945S8|ASHH3_ARATH (e_value=2e-115) Histone-lysine N-methyltransferase ASHH3 OS=Arabidopsis thaliana GN=ASHH3; Solyc01g006220.2.1 genomic_reference:SL2.40ch01 gene_region:839826-851722 transcript_region:SL2.40ch01:839826..851722- go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- C1G685_PARBD); contains Interpro domain(s) IPR001214 SET " 3 8 3 18 opLeV0100001094 sgn|U236390 CAATTGTATGATCTTCAAGATAGGCTTGGGTTAAGCCACCAAGCAAAGTTGTAGATTGGCTAATAGATGC Experimental SGN-U601349 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157356306|emb|CAO62458.1| (e_value=6e-26) unnamed; (*ATH) AT5G60970.1 (e_value=7e-27) | Symbol: None | TCP family transcription factor, putative, putative basic helix-loop-helix DNA binding protein TCP2, Arabidopsis thaliana, EMBL:AF072691 | chr5:24552796-24553878 REVERSE | Aliases: MSL3.11, MSL3_11; (*SWP) sp|Q9FME3|TCP5_ARATH (e_value=6e-26) Transcription factor TCP5 OS=Arabidopsis thaliana GN=TCP5; Solyc06g069460.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:39599418-39600254 transcript_region:SL2.40ch06:39599418..39600254- functional_description:"Transcription factor (Fragment) (AHRD V1 *-*- D6MK40_9ASPA); contains Interpro domain(s) IPR005333 Transcription factor, TCP " 3 4 3 18 opLeV0100001095 sgn|U215898 AGTCCCCTTGGATACAGAATCACCTTTATTAGGGAGCGTTTTACTCAATGTGAGATTTCTCGTCGTGAAT Experimental SGN-U576251 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|15240518|ref|NP_199773.1| (e_value=2e-68) myb family transcription factor [Arabidopsis thaliana]; (*ATH) AT5G49620.1 (e_value=2e-70) Symbol: None | myb family transcription factor (MYB78), contains PFAM profile: myb DNA binding domain PF00249; identical to cDNA putative transcription factor (MYB78) mRNA, partial cds GI:3941509 | chr5:20154620-20156610 REVERSE | Aliases: K6M13.18,... ; (*SWP) sp|P81391|MYB05_ANTMA (e_value=3e-44) Myb-related protein 305 OS=Antirrhinum majus GN=MYB305; \N \N 3 8 7 18 opLeV0100001096 sgn|U226386 ACATTCCTAAACCCCCTACCTCTGACTTTACTCAACAGAAATCTCATTCCGAAGGAACAGGAATTTTTGG Experimental SGN-U565530 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157348123|emb|CAO22833.1| (e_value=7e-53) unnamed; (*ATH) AT4G36550.1 (e_value=3e-32) Symbol: None | U-box domain-containing protein, low similarity to immediate-early fungal elicitor protein CMPG1 (Petroselinum crispum) GI:14582200; contains Pfam profile PF04564: U-box domain | chr4:17245403-17247585 REVERSE | Aliases: AP22.63, AP22... ; (*SWP) sp|O23225|PUB5_ARATH (e_value=3e-31) U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5; Solyc02g085140.2.1 genomic_reference:SL2.40ch02 gene_region:42693111-42697063 transcript_region:SL2.40ch02:42693111..42697063- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 ***- Q1EPA8_MUSAC); contains Interpro domain(s) IPR011989 Armadillo-like helical " 3 4 7 18 opLeV0100001097 sgn|U213702 ATATGGAACCATTTTTAATTGTGCCAAAAGTGGAGGCCCATGTGGTGGTGGGCTTTTTTGGCAAGTATTG Experimental SGN-U579631 Tomato 200607#2 [84 ESTs aligned] (*GB) gi|125951563|sp|Q8L5J1|MAN4_SOLLC (e_value=0) Mannan; (*ATH) AT5G66460.1 (e_value=1e-123) Symbol: None | (1-4)-beta-mannan endohydrolase, putative, similar to (1-4)-beta-mannan endohydrolase (Coffea arabica) GI:10178872; contains Pfam profile PF00150: Cellulase (glycosyl hydrolase family 5) | chr5:26555621-26558262 REVERSE | Aliases: K1F... ; (*SWP) sp|Q8L5J1|MAN4_SOLLC (e_value=0) Mannan endo-1,4-beta-mannosidase 4 OS=Solanum lycopersicum GN=MAN4; Solyc01g008710.2.1 genomic_reference:SL2.40ch01 gene_region:2755066-2758116 transcript_region:SL2.40ch01:2755066..2758116+ go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- D2S259_HALTV); contains Interpro domain(s) IPR018087 Glycoside hydrolase, family 5, conserved site IPR013781 Glycoside hydrolase, subgroup, catalytic core " 1 7 17 19 opLeV0100001098 sgn|U223191 ACCAGGCCACATCCTATGAACATCCACAGACCACACAAGTTTGTTTCTTCGAAACAATTCAGGGAATAGC Experimental SGN-U566321 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157342304|emb|CAO64417.1| (e_value=3e-100) unnamed; (*ATH) AT1G74850.1 (e_value=8e-89) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr1:28122510-28125975 REVERSE | Aliases: F25A4.18, F25A4_18; (*SWP) sp|Q9S7Q2|PP124_ARATH (e_value=8e-88) Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2; Solyc03g113630.2.1 genomic_reference:SL2.40ch03 gene_region:57759710-57764210 transcript_region:SL2.40ch03:57759710..57764210- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LDK6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat " 1 3 17 19 opLeV0100001099 sgn|U214349 GTGCTTTAATTAAACCAGCTCTACGACCTTTGAAATCGTTGAATACTTCTTCTACAGTCCTAGGTACCGT Experimental SGN-U580726 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|63028790|gb|AAY27262.1| (e_value=2e-108) putative alfin-like transcription factor [Solanum tuberosum]; (*ATH) AT1G14510.1 (e_value=5e-93) | Symbol: None | PHD finger family protein, contains Pfam domain, PF00628: PHD-finger | chr1:4961882-4964420 REVERSE | Aliases: F14L17.29, F14L17_29; (*SWP) sp|O81488|Y5621_ARATH (e_value=1e-81) PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210; Solyc01g102760.2.1 genomic_reference:SL2.40ch01 gene_region:83252023-83258088 transcript_region:SL2.40ch01:83252023..83258088+ functional_description:"PHD finger family protein (AHRD V1 ***- D7KBK9_ARALY)" 1 7 1 18 opLeV0100001100 sgn|U220394 TGAGCATTATGCAACGTTGAAGCCTTCATATCAGGGGCAAGAGAGAGCTATCAGCAAAAGGATTGGAATT Experimental SGN-U578359 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|157358945|emb|CAO66841.1| (e_value=3e-90) unnamed; (*ATH) AT3G13350.1 (e_value=4e-76) Symbol: None | high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein, low similarity to Dead Ringer Protein Chain A Dna-Binding Domain (GI:6573608), Arid-Dna Complex (GI:20150982) from (Drosophila melanogast... ; (*SWP) sp|Q68CP9|ARID2_HUMAN (e_value=1e-14) AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2; Solyc12g016190.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6311971-6326406 transcript_region:SL2.40ch12:6311971..6326406+ go_terms:GO:0005634,GO:0005622 functional_description:"High mobility group family (Fragment) (AHRD V1 **-- B9GFX2_POPTR); contains Interpro domain(s) IPR001606 AT-rich interaction region " 1 3 1 18 opLeV0100001101 sgn|U235324 TCACCTGGTTGTTGTGATTGATGTTCCAAACCTATGCCTGCTCTCCGTTCGGTGAGCATGTTATAAATCC Experimental \N \N \N \N 1 7 5 18 opLeV0100001102 sgn|U221491 CTCCAACACACTCTGTTACATTCTGACCTGTCATCTCCAGATGCACACCACCAGGATAGCTACCTTCTTG Experimental SGN-U566920 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|24745903|dbj|BAC23040.1| (e_value=3e-52) 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Solanum tuberosum]; (*ATH) AT4G33510.1 (e_value=2e-53) | Symbol: None | 2-dehydro-3-deoxyphosphoheptonate aldolase 2 / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2 / DAHP synthetase 2 (DHS2), nearly identical to SP:Q00218 | chr4:16116450-16118800 FORWARD | Aliases: F17M5.270, F17M5_270; (*SWP) sp|P27608|AROF_TOBAC (e_value=9e-53) Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1; Solyc01g105420.2.1 genomic_reference:SL2.40ch01 gene_region:85352194-85353280 transcript_region:SL2.40ch01:85352194..85353280- go_terms:GO:0009073 functional_description:"Phospho-2-dehydro-3-deoxyheptonate aldolase 2 (AHRD V1 ***- B6UAK5_MAIZE); contains Interpro domain(s) IPR002480 DAHP synthetase, class II " 1 3 5 18 opLeV0100001103 sgn|U237007 GCAGGGCCCATTGCAACAATGGGACTCCCATTCCCCCCCGTTTTCAAAACAACCCTACCCCCTTCCAAAA Experimental SGN-U602932 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|195652511|gb|ACG45723.1| (e_value=8e-13) hydrolase,; (*ATH) AT1G07230.1 (e_value=1e-13) Symbol: None | phosphoesterase family protein, low similarity to SP:P95246 Phospholipase C 2 precursor (EC 3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam profile PF04185: Phosphoesterase family | chr1:2220252-2222981 REVERSE | Aliases: F10K1.6... ; \N \N 3 7 17 19 opLeV0100001104 sgn|U214523 GGATCACATCCAGTGGTCAGCGGGATCTTGACCAAGTTGCCGGAAGAATTGCTGTTGCTTGTTAAGAGAG Experimental SGN-U570977 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147860006|emb|CAN81047.1| (e_value=1e-41) hypothetical; (*ATH) AT3G46740.1 (e_value=3e-42) Symbol: None | chloroplast outer envelope protein, putative, similar to chloroplastic outer envelope membrane protein (OEP75) (Pisum sativum) GI:633607; contains Pfam profile PF01103: outer membrane protein, OMP85 family | chr3:17226798-17230328 REV... ; (*SWP) sp|Q43715|TOC75_PEA (e_value=8e-42) Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75; Solyc12g039120.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:37883272-37884761 transcript_region:SL2.40ch12:37883272..37884761- go_terms:GO:0005840 functional_description:"40S ribosomal protein S19-like (AHRD V1 ***- Q2VCJ6_SOLTU); contains Interpro domain(s) IPR001266 Ribosomal protein S19e " 3 3 17 19 opLeV0100001105 sgn|U218103 TGGATGGTCCTCTGAACCGGACTATATCGATTCCGGTTCCAGCAGTAGCGCTATTAGAACCGGGCCGGTG Experimental SGN-U580040 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|147768005|emb|CAN71657.1| (e_value=1e-22) hypothetical; (*ATH) AT1G52720.1 (e_value=3e-23) | Symbol: None | expressed protein | chr1:19644567-19645333 FORWARD | Aliases: F6D8.3, F6D8_3; Solyc03g114100.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:58188247-58188624 transcript_region:SL2.40ch03:58188247..58188624+ functional_description:"AT3g15630/MSJ11_3 (AHRD V1 ***- Q9LW16_ARATH)" 3 7 1 18 opLeV0100001106 sgn|U222519 GGCATCTTTTCTGCAAATCTTGTGCTTGCACTGCAGCTTCTGTGATGATATTCCAAGGTATTAGGGCTGC Experimental SGN-U582938 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157349981|emb|CAO39880.1| (e_value=4e-123) unnamed; (*ATH) AT2G38920.1 (e_value=5e-110) Symbol: None | SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related, weak similarity to tripartite motif protein TRIM13 (Mus musculus) GI:12407427; contains Pfam profile PF03105: SPX domain, weak hit... ; Solyc11g045230.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:37026095-37031319 transcript_region:SL2.40ch11:37026095..37031319+ go_terms:GO:0008270 functional_description:"Tripartite motif-containing 22 (Predicted) (AHRD V1 *-*- B0VXD4_CALJA); contains Interpro domain(s) IPR004331 SPX, N-terminal " 3 3 1 18 opLeV0100001107 sgn|U239578 GGTAGCTGCACAGGCTCTACAGTTGACAACTTCAAGCCTCCAGGAAACTAAGAATGCACAACCATCAAAC Experimental SGN-U563772 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157346240|emb|CAO15937.1| (e_value=5e-29) unnamed; (*ATH) AT2G36350.1 (e_value=1e-15) | Symbol: None | protein kinase, putative, similar to protein kinase KIPK (KCBP-interacting protein kinase) (Arabidopsis thaliana) gi:7716430:gb:AAF68383 | chr2:15245195-15249002 FORWARD | Aliases: F2H17.4, F2H17_4; Solyc10g083500.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62615655-62619797 transcript_region:SL2.40ch10:62615655..62619797+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 *-*- A7VL53_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 3 7 5 18 opLeV0100001108 sgn|U217247 TTCATCTTCGATCCGTCAAGGTTTCGCTCAACGCCGCCCTTGGTTGGAACTTCTCGATCGCACATCATTT Experimental SGN-U568950 Tomato 200607#2 [33 ESTs aligned] (*GB) gi|118484561|gb|ABK94154.1| (e_value=6e-37) unknown; (*ATH) AT5G05380.1 (e_value=4e-37) Symbol: None | prenylated rab acceptor (PRA1) family protein, weak similarity to prenylated Rab acceptor 1 (PRA1) (Homo sapiens) GI:4877285; contains Pfam profile PF03208: Prenylated rab acceptor (PRA1) | chr5:1592215-1592868 FORWARD | Aliases: K18I... ; Solyc06g050570.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:29767594-29768250 transcript_region:SL2.40ch06:29767594..29768250- functional_description:"Prenylated rab acceptor family protein (AHRD V1 ***- D7LVC4_ARALY); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 " 1 7 19 19 opLeV0100001109 sgn|U231865 TCTTTCCTTCATACCTTCACCTTCATTCCTCGCGTCTCCCCAATCCCTCACTTTCTTCGCACCCACCATT Experimental SGN-U569463 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|21536680|gb|AAM61012.1| (e_value=1e-77) unknown [Arabidopsis thaliana]; (*ATH) AT1G80290.1 (e_value=1e-79) | Symbol: None | a member of the Glycosyltransferase Family 64 (according to CAZy Database) | chr1:30193213-30194618 FORWARD | Aliases: F5I6.4, F5I6_4; (*SWP) sp|Q5IGR7|EXT1B_DANRE (e_value=4e-23) Exostosin-1b OS=Danio rerio GN=ext1b; Solyc08g006080.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:831675-832673 transcript_region:SL2.40ch08:831675..832673- go_terms:GO:0016757 functional_description:"Exostosin (AHRD V1 *-*- Q98SV5_XENLA); contains Interpro domain(s) IPR015338 EXTL2, alpha-1,4-N-acetylhexosaminyltransferase " 1 3 19 19 opLeV0100001110 sgn|U223746 GCTCGGCGAAGCGATAAGAGTCGATTCCGTTCACCTTGTTCTTCTCGAAATCGATGCCGTGACGCCGGAG Experimental SGN-U571823 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|110293351|gb|ABG66307.1| (e_value=2e-115) CCR4; (*ATH) AT5G22250.1 (e_value=3e-112) | Symbol: None | CCR4-NOT transcription complex protein, putative, similar to SWISS-PROT:Q60809 CCR4-NOT transcription complex, subunit 7 (CCR4-associated factor 1, (CAF1) (Mus musculus) | chr5:7365535-7366781 REVERSE | Aliases: T6G21.2; (*SWP) sp|Q3ZC01|CNOT7_BOVIN (e_value=4e-58) CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7; Solyc11g068770.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50490577-50491434 transcript_region:SL2.40ch11:50490577..50491434+ go_terms:GO:0046872,GO:0000175 functional_description:"CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 " 1 7 3 18 opLeV0100001111 sgn|U213254 CCAACGAACCTCTTGCTGCCTGCACTCAGATCCTCCAGCAATACCAATTGACTGAGGATCAATATTGAAG Experimental SGN-U592200 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|6561156|gb|AAF16869.1|AF109693_1 (e_value=4e-26) allergen-like; (*ATH) AT4G08685.1 (e_value=2e-18) | Symbol: None | pollen Ole e 1 allergen and extensin family protein, contains Pfam domain, PF01190: Pollen proteins Ole e I family | chr4:5550426-5551816 FORWARD | Aliases: None; (*SWP) sp|P33050|PSC13_MAIZE (e_value=6e-13) Pollen-specific protein C13 OS=Zea mays GN=MGS1; Solyc04g054810.2.1 genomic_reference:SL2.40ch04 gene_region:52432873-52434340 transcript_region:SL2.40ch04:52432873..52434340+ functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6T2Z8_MAIZE); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin " 1 3 3 18 opLeV0100001112 sgn|U227507 GGGCTTACTCACTTATCATCTTCAAATTCATCAACTTCTAGGGGACAATGGGAAAGGACACTTCAAGCTG Experimental SGN-U573247 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|1430848|emb|CAA67575.1| (e_value=8e-157) transcription factor [Lycopersicon esculentum]; (*ATH) AT3G47600.1 (e_value=1e-77) | Symbol: None | myb family transcription factor (MYB94), contains Pfam profile: PF00249 myb-like DNA-binding domain; identical to cDNA putative transcription factor (MYB94) GI:3941527 | chr3:17550323-17552215 REVERSE | Aliases: F1P2.150; (*SWP) sp|P81392|MYB06_ANTMA (e_value=3e-73) Myb-related protein 306 OS=Antirrhinum majus GN=MYB306; Solyc02g067340.2.1 genomic_reference:SL2.40ch02 gene_region:32118568-32121578 transcript_region:SL2.40ch02:32118568..32121578- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9SN78_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor " 1 7 7 18 opLeV0100001113 sgn|U225933 CACTACCCGCCGGCACAGACCAAGATCACGTCGTTCAACAACGACAAGTCGGCCGACTCGGGCACCTACG Experimental SGN-U573445 Tomato 200607#2 [3 ESTs aligned] \N \N 1 3 7 18 opLeV0100001114 sgn|U235827 ATTTCAATCCGGGAAATTCCCCAAGGACAAATTATCTAAACCCTGGCCCCGCCTTTGGGGGGCTGGCTTC Experimental SGN-U603547 Tomato 200607#2 [1 ESTs aligned] \N \N 3 7 19 19 opLeV0100001115 sgn|U212769 ATCCAAACATGTGGAACTGGTGTCCCGTAGAGCAGGCAACAAGTTATCTGATTAGACCTCTATGGAGGCA Experimental SGN-U578760 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|168024352|ref|XP_001764700.1| (e_value=2e-56) predicted; (*ATH) AT1G10630.1 (e_value=3e-58) Symbol: None | Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role i... ; (*SWP) sp|P36397|ARF1_ARATH (e_value=2e-57) ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1; \N \N 3 3 19 19 opLeV0100001116 sgn|U212565 GCTTGGAGCTAACAAGTTTAGGGAAACTCAACCATTAGGTACAGCAGCTC Experimental SGN-U578777 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|395044|emb|CAA52067.1| (e_value=3e-59) tomato ripening associated membrane protein [Lycopersicon esculentum]; (*ATH) AT4G23400.1 (e_value=8e-55) | Symbol: PIP1;5 | major intrinsic family protein / MIP family protein, contains Pfam profile: MIP PF00230 | chr4:12220753-12222380 FORWARD | Aliases: F16G20.100, F16G20_100, PCR55, PIP1D, PIP1;5; (*SWP) sp|Q08451|PIP1_SOLLC (e_value=2e-60) Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum; Solyc08g081190.2.1 genomic_reference:SL2.40ch08 gene_region:61427665-61431015 transcript_region:SL2.40ch08:61427665..61431015+ go_terms:GO:0015250 functional_description:"Aquaporin 1 (AHRD V1 ***- O24662_TOBAC); contains Interpro domain(s) IPR012269 Aquaporin " 3 7 3 18 opLeV0100001117 sgn|U217252 AACCAGATGTCAGTGCTAAATGGTCCTCAAATCTGGTGAAGCCGTCATCTTTTTTTGGTCCTCCACCTGC Experimental \N \N \N \N 3 3 3 18 opLeV0100001118 sgn|U212776 AAAACAAGTGCTCTCTCTCCAAATCCCCCAACATTAATTCAAAAATTCATGCCTGACCCAGAAACTCCTG Experimental SGN-U580325 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|1407705|gb|AAB67865.1| (e_value=1e-56) lipoxygenase [Solanum tuberosum]; (*ATH) AT1G55020.1 (e_value=3e-40) | Symbol: None | lipoxygenase (LOX1), identical to SP:Q06327 | chr1:20529375-20533940 FORWARD | Aliases: None; (*SWP) sp|P37831|LOX1_SOLTU (e_value=2e-46) Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1; \N \N 3 7 7 18 opLeV0100001119 sgn|U215671 CTAAGCATGTTCTACGGGTTGATCAGGAAGAGCTTGAGACTGTCATTCCCCAAATTGGTGGTCTTGTGAG Experimental SGN-U566098 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|157343536|emb|CAO68042.1| (e_value=3e-154) unnamed; (*ATH) AT1G55460.1 (e_value=9e-151) | Symbol: None | Kin17 DNA-binding protein-related, contains similarity to zinc finger protein rts2 GB:U16133 GI:563244 from (Saccharomyces cerevisiae) | chr1:20711144-20712690 FORWARD | Aliases: T5A14.13, T5A14_13; (*SWP) sp|O60870|KIN_HUMAN (e_value=6e-89) KIN, antigenic determinant of recA protein homolog OS=Homo sapiens GN=KIN; Solyc05g054500.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63560285-63561484 transcript_region:SL2.40ch05:63560285..63561484- go_terms:GO:0003723,GO:0003690 functional_description:"DNA/RNA-binding protein KIN17 (AHRD V1 **-* KIN17_MOUSE); contains Interpro domain(s) IPR019447 DNA/RNA-binding protein Kin17, conserved region " 3 3 7 18 opLeV0100001120 sgn|U223418 CCATTTGGCATTCCACCAGGGGGAACATTGCCCTGCGGTCCAGATCCAGGAGGCATGCCAACAAAATGAC Experimental SGN-U576241 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157351909|emb|CAO42873.1| (e_value=0) unnamed; (*ATH) AT5G13480.1 (e_value=0) Symbol: None | similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:At5g67320.1); similar to putative FY protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87887.1); contains InterPro domain G-protein beta WD-40 repeat (InterPro:... ; (*SWP) sp|Q9C0J8|WDR33_HUMAN (e_value=9e-133) WD repeat-containing protein 33 OS=Homo sapiens GN=WDR33; Solyc08g067040.2.1 genomic_reference:SL2.40ch08 gene_region:53153910-53170013 transcript_region:SL2.40ch08:53153910..53170013+ go_terms:GO:0005515 functional_description:"Polyadenylation factor subunit 2 (AHRD V1 *--- D6RKS9_COPC7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region " 2 8 17 19 opLeV0100001121 sgn|U212693 CCTGATAACCATCCTCTCTGCGGTGTTGTCAAGGGCATGCCCCTCCCAGCTCCATACAAGGCTTAATTTA Experimental SGN-U578681 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|128592|sp|P29162|ASOL_TOBAC (e_value=5e-43) L-ascorbate; (*ATH) AT3G13400.1 (e_value=1e-34) | Symbol: SKS13 | multi-copper oxidase type I family protein, similar to pollen-specific BP10 protein (SP:Q00624)(Brassica napus); contains Pfam profile: PF00394 Multicopper oxidase | chr3:4355145-4357435 FORWARD | Aliases: MRP15.10, SKS13; (*SWP) sp|P29162|ASOL_TOBAC (e_value=4e-44) L-ascorbate oxidase homolog OS=Nicotiana tabacum; Solyc01g056310.2.1 genomic_reference:SL2.40ch01 gene_region:46194291-46196312 transcript_region:SL2.40ch01:46194291..46196312+ go_terms:GO:0055114 functional_description:"Laccase-2 (AHRD V1 **-- LAC2_ORYSJ); contains Interpro domain(s) IPR011707 Multicopper oxidase, type 3 " 2 4 17 19 opLeV0100001122 sgn|U215841 CGACCAGGAGGAGGGACCTGAAGTGATGAAGGCTAATGATGAGAGATCAGATGATGAGATGTCAAAACGA Experimental SGN-U576784 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|157353198|emb|CAO45121.1| (e_value=2e-20) unnamed; (*ATH) AT5G55660.1 (e_value=5e-14) | Symbol: None | expressed protein, similar to unknown protein (pir::T08929) | chr5:22556601-22560700 FORWARD | Aliases: MDF20.10, MDF20_10; Solyc10g006000.2.1 genomic_reference:SL2.40ch10 gene_region:756753-762127 transcript_region:SL2.40ch10:756753..762127- functional_description:"Dek protein (AHRD V1 *-*- B6SWA1_MAIZE); contains Interpro domain(s) IPR014876 DEK, C-terminal " 2 8 1 18 opLeV0100001123 sgn|U225667 TTTCCCAGAGGAAATTAGCATAAGCAGCATGTATGTGACTGTCACTGGAGGCTGTTTGGACTGCTCTTTC Experimental SGN-U574591 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|147794067|emb|CAN77841.1| (e_value=2e-48) hypothetical; (*ATH) AT5G20190.1 (e_value=6e-28) | Symbol: None | expressed protein | chr5:6814095-6815356 FORWARD | Aliases: F5O24.80, F5O24_80; Solyc09g064630.2.1 genomic_reference:SL2.40ch09 gene_region:57551580-57553691 transcript_region:SL2.40ch09:57551580..57553691+ go_terms:GO:0005488 functional_description:"TPR domain protein (AHRD V1 *--- B6U810_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical " 2 4 1 18 opLeV0100001124 sgn|U219704 GGTATGTGCCCCACCCTGGCACGAGAAGTACCGGGAAATGCTGTTATGTTTGGGGTATATGAAGCGTTAA Experimental SGN-U592270 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|133711803|gb|ABO36621.1| (e_value=1e-84) mitochondrial; (*ATH) AT5G46800.1 (e_value=8e-73) Symbol: None | mitochondrial carnitine/acyl carrier, putative / a bout de souffle (BOU) / CAC-like protein, identical to SP:Q93XM7 Mitochondrial carnitine/acylcarnitine carrier-like protein (A BOUT DE SOUFFLE) (Carnitine/acylcarnitine translocase-li... ; (*SWP) sp|Q93XM7|MCAT_ARATH (e_value=7e-72) Mitochondrial carnitine/acylcarnitine carrier-like protein OS=Arabidopsis thaliana GN=BOU; Solyc06g061170.2.1 genomic_reference:SL2.40ch06 gene_region:35568612-35570456 transcript_region:SL2.40ch06:35568612..35570456+ go_terms:GO:0000064 functional_description:"Solute carrier family 25 (Mitochondrial carrier ornithine transporter) member 15 (AHRD V1 **** Q2KHW4_BOVIN); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein " 2 8 5 18 opLeV0100001125 sgn|U217467 CTCTAGCAAATGGAACTAAGGTCGTGCTCAACTGCAGCGGTAGAGGCGATAAAGATGTTCAGACTGCTAT Experimental SGN-U581112 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|57157621|dbj|BAD83779.1| (e_value=0) tryptophan synthase beta subunit [Polygonum tinctorium]; (*ATH) AT5G54810.1 (e_value=0) | Symbol: None | tryptophan synthase, beta subunit 1 (TSB1), identical to SP:P14671 | chr5:22281834-22284011 REVERSE | Aliases: MBG8.7, MBG8_7; (*SWP) sp|O50046|TRPB_CAMAC (e_value=0) Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB; Solyc07g064280.2.1 genomic_reference:SL2.40ch07 gene_region:63715597-63719310 transcript_region:SL2.40ch07:63715597..63719310- go_terms:GO:0016833,GO:0004834 functional_description:"Tryptophan synthase beta chain 1 (AHRD V1 **** Q0WUI8_ARATH); contains Interpro domain(s) IPR006654 Tryptophan synthase, beta chain " 2 4 5 18 opLeV0100001126 sgn|U213302 AAAAGGTGGAGCTACAAGAAGGTCCTCTTGATCAGTTCACACATGAGATGGAGCCATTCCTGCGGAAACA Experimental SGN-U566987 Tomato 200607#2 [130 ESTs aligned] (*GB) gi|76160923|gb|ABA40425.1| (e_value=9e-119) unknown; (*ATH) AT1G25260.1 (e_value=3e-85) | Symbol: None | acidic ribosomal protein P0-related, contains similarity to 60S acidic ribosomal protein GI:5815233 from (Homo sapiens) | chr1:8853946-8855847 REVERSE | Aliases: F4F7.35, F4F7_35; (*SWP) sp|A4FV84|MRT4_BOVIN (e_value=4e-52) mRNA turnover protein 4 homolog OS=Bos taurus GN=MRTO4; Solyc01g104470.2.1 genomic_reference:SL2.40ch01 gene_region:84693611-84696766 transcript_region:SL2.40ch01:84693611..84696766- go_terms:GO:0003735 functional_description:"mRNA turnover protein 4 homolog (AHRD V1 **-- B5X718_SALSA)" 4 8 17 19 opLeV0100001127 sgn|U222592 CTAAAGGTGGGGACACAATCTGGGGTGGACTGGATTGGTCCCCTGAAGAAGGCCATGAATGTAATGAAAA Experimental SGN-U574732 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147780467|emb|CAN62548.1| (e_value=2e-33) hypothetical; (*ATH) AT5G13640.1 (e_value=2e-35) Symbol: None | lecithin:cholesterol acyltransferase family protein / LACT family protein, similar to SP:P40345 Phospholipid:diacylglycerol acyltransferase (EC 2.3.1.158) (PDAT) {Saccharomyces cerevisiae}; contains Pfam profile PF02450: Lecithin:chol... ; Solyc07g041210.2.1 genomic_reference:SL2.40ch07 gene_region:49315985-49322286 transcript_region:SL2.40ch07:49315985..49322286- go_terms:GO:0046027 functional_description:"Phospholipid diacylglycerol acyltransferase (AHRD V1 **** A6R763_AJECN); contains Interpro domain(s) IPR003386 Lecithin:cholesterol acyltransferase " 4 4 17 19 opLeV0100001128 sgn|U235552 AAGTGCCATTGGTTCCTATTCCCAAGTTGAAACCACAGGCAGCAGCGCCTGCGCCAAAGAGTACCAAGAA Experimental SGN-U602426 Tomato 200607#2 [1 ESTs aligned] Solyc10g078290.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59445485-59447849 transcript_region:SL2.40ch10:59445485..59447849- go_terms:GO:0006355 functional_description:"BZIP family transcription factor (Fragment) (AHRD V1 *-*- Q677A7_HYAOR); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 " 4 4 1 18 opLeV0100001129 sgn|U218386 TTCAGTGGTGAAAATTGACGAGGGTCATAGATGTCTAGCATCTATTGTTTGCATCAGACGTTTTAGGTTG Experimental SGN-U582841 Tomato 200607#2 [12 ESTs aligned] \N \N 4 8 5 18 opLeV0100001130 sgn|U218758 GCACCCGCTGCTGGTGTTCGTCAATATGATTGGAGTAGAAAGCAGGTCTTCTCGCTGTCAGTGACTGAAA Experimental SGN-U575378 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|9651810|gb|AAF91282.1|AF233342_1 (e_value=7e-129) DNA-binding; (*ATH) AT1G14410.1 (e_value=5e-83) | Symbol: None | DNA-binding protein-related, similar to DNA-binding protein p24 GI:9651810 from (Solanum tuberosum) | chr1:4929118-4930888 REVERSE | Aliases: F14L17.18, F14L17_18; Solyc05g007100.2.1 genomic_reference:SL2.40ch05 gene_region:1672964-1676481 transcript_region:SL2.40ch05:1672964..1676481+ go_terms:GO:0042162 functional_description:"DNA-binding protein p24 (AHRD V1 **-* Q9LL85_SOLTU); contains Interpro domain(s) IPR013742 Plant transcription factor " 4 4 5 18 opLeV0100001131 sgn|U224447 TGCTGGTAAAGTTGCCTTCCAAAACCTCATGTTCCATGACCATAACATTAATCATGGCCATTAATCATCG Experimental SGN-U576109 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|12003388|gb|AAG43551.1|AF211533_1 (e_value=3e-59) Avr9/Cf-9; (*ATH) AT1G52140.1 (e_value=1e-22) | Symbol: None | expressed protein | chr1:19411033-19411923 REVERSE | Aliases: F5F19.20, F5F19_20; \N \N 2 8 19 19 opLeV0100001132 sgn|U212709 AAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTT Experimental SGN-U580745 Tomato 200607#2 [85 ESTs aligned] (*GB) gi|81074776|gb|ABB55374.1| (e_value=2e-136) ribosomal; (*ATH) AT4G36130.1 (e_value=1e-132) | Symbol: None | 60S ribosomal protein L8 (RPL8C), ribosomal protein L8, cytosolic, tomato, PIR1:R5TOL8 | chr4:17097568-17098882 FORWARD | Aliases: F23E13.20; (*SWP) sp|P29766|RL8_SOLLC (e_value=1e-137) 60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8; Solyc12g005330.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:208843-210348 transcript_region:SL2.40ch12:208843..210348+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L2 (AHRD V1 ***- RL2_EDWI9); contains Interpro domain(s) IPR002171 Ribosomal protein L2 " 2 4 19 19 opLeV0100001133 sgn|U222726 GCCCTCGGTACTTCACTGAAGTTAACTGTTGAGGGAAAGAATCAGCTGATCTATCCGGAAACCTGGGCTT Experimental SGN-U570376 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|157346767|emb|CAO16836.1| (e_value=3e-131) unnamed; (*ATH) AT1G34470.1 (e_value=2e-111) | Symbol: None | permease-related, low similarity to purine permease (Arabidopsis thaliana) GI:7620007 | chr1:12604278-12607011 FORWARD | Aliases: F12K21.21, F12K21_21; (*SWP) sp|Q5RDB8|NPAL1_PONAB (e_value=3e-69) NIPA-like protein 1 OS=Pongo abelii GN=NPAL1; Solyc11g065090.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:47473695-47479479 transcript_region:SL2.40ch11:47473695..47479479+ go_terms:GO:0005665 functional_description:"DUF803 domain membrane protein (AHRD V1 **-- B8MZ64_ASPFN); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 " 2 8 3 18 opLeV0100001134 sgn|U212854 TCTGTGGATAGGAGCTTTACTGATGTTAGGGTCACAACGTGTAGTTTGTTTAGTTTTCGTTCAGTAAGCT Experimental SGN-U578046 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|212722842|ref|NP_001131288.1| (e_value=9e-64) hypothetical; (*ATH) AT3G43810.1 (e_value=6e-66) | Symbol: None | calmodulin-7 (CAM7), almost identical to calmodulin GI:16227 from (Arabidopsis thaliana), SP:P59220 Calmodulin-7 {Arabidopsis thaliana} | chr3:15675358-15677445 REVERSE | Aliases: T28A8.100; (*SWP) sp|P62163|CALM2_SOYBN (e_value=6e-65) Calmodulin-2 OS=Glycine max GN=CAM-2; \N \N 2 4 3 18 opLeV0100001135 sgn|U217014 AAAGCCAAGCAAGATGATGGACTGTCAGAACTCAGCGATCTGTTGGGGGAGCTCAAGAATATGGCTGTTG Experimental SGN-U565124 Tomato 200607#2 [26 ESTs aligned] (*GB) gi|157342373|emb|CAO64486.1| (e_value=3e-99) unnamed; (*ATH) AT5G61210.1 (e_value=3e-92) Symbol: None | SNAP25 homologous protein SNAP33 (SNAP33) (SNAP33B) / synaptosomal-associated protein SNAP25-like 1 / snap25a, identical to SNAP25 homologous protein SNAP33 (AtSNAP33) (Synaptosomal-associated protein SNAP25-like 1) (SNAP-25 like prot... ; (*SWP) sp|Q9S7P9|SNP33_ARATH (e_value=3e-91) SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33; Solyc06g069570.2.1 genomic_reference:SL2.40ch06 gene_region:39719238-39721943 transcript_region:SL2.40ch06:39719238..39721943+ go_terms:GO:0005484 functional_description:"SNAP25 homologous protein SNAP33 (AHRD V1 **-- SNP33_ARATH); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region " 2 8 7 18 opLeV0100001136 sgn|U218782 CTTTGAAACAGACTGCACCGACATGTTCAAGATGAATAAGCTGCTGGCTAAACATATCACAGCACTCGAT Experimental SGN-U576627 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|21537175|gb|AAM61516.1| (e_value=9e-87) unknown [Arabidopsis thaliana]; (*ATH) AT4G22360.1 (e_value=8e-89) | Symbol: None | SWIB complex BAF60b domain-containing protein, contains Pfam profile PF02201: BAF60b domain of the SWIB complex | chr4:11807672-11810129 FORWARD | Aliases: T10I14.190, T10I14_190; (*SWP) sp|O74503|UAF30_SCHPO (e_value=1e-13) Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe GN=spp27; Solyc11g012290.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5148298-5151054 transcript_region:SL2.40ch11:5148298..5151054+ functional_description:"SWIB/MDM2 domain containing protein (AHRD V1 *-*- B6TD34_MAIZE); contains Interpro domain(s) IPR019835 SWIB domain " 2 4 7 18 opLeV0100001137 sgn|U240874 TCGATGGTACATAAACCTGCTCTTTGAGATTCTGTGTGGCGCTTTCAGTAGGAAAACCTCTAACAGCACC Experimental SGN-U604779 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|195612282|gb|ACG27971.1| (e_value=1e-18) protein; (*ATH) AT3G54090.1 (e_value=1e-20) | Symbol: None | pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase | chr3:20039102-20040964 FORWARD | Aliases: F24B22.50; Solyc09g011850.2.1 genomic_reference:SL2.40ch09 gene_region:5125301-5128168 transcript_region:SL2.40ch09:5125301..5128168+ functional_description:"Fructokinase-like protein 1 (AHRD V1 ***- D9IWP2_SOLTU); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase " 4 4 19 19 opLeV0100001138 sgn|U221234 TTTTCATACGTTTGTGGCATCATATCTCATGCTTCGAATAGTACGAGTAGAGCTCCGTTGATTCTCAAGT Experimental SGN-U571462 Tomato 200607#2 [12 ESTs aligned] \N \N 4 8 3 18 opLeV0100001139 sgn|U242612 GGAGCATTCCTTGAAGCTAGTGATCTTTCAAGACCCATTGAGGTTGATACGTCAGGTTTTGACATGCTTG Experimental SGN-U600608 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|21105746|gb|AAM34772.1|AF509872_1 (e_value=1e-16) nam-like; Solyc05g055470.2.1 genomic_reference:SL2.40ch05 gene_region:64249833-64254800 transcript_region:SL2.40ch05:64249833..64254800- go_terms:GO:0003700,GO:0016563 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- A9PB02_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein " 4 4 3 18 opLeV0100001140 sgn|U223634 ATGATGGCAAGCCGAGGCTAGCATATGAGTTGTATGTGAGAGCTCTAACTGAAGGCCTGAGTCTTTCTAC Experimental SGN-U575916 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157345346|emb|CAO14644.1| (e_value=1e-86) unnamed; (*ATH) AT3G46610.1 (e_value=2e-75) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr3:17170990-17173460 REVERSE | Aliases: F12A12.130; (*SWP) sp|Q9SXD1|PPR91_ARATH (e_value=1e-15) Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670; Solyc02g093620.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48994052-48996280 transcript_region:SL2.40ch02:48994052..48996280+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M6I3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat " 4 8 7 18 opLeV0100001141 sgn|U218494 GCCAGAACTCCACTCTCGCAGTTGGAATTCCATAAGCTTTTTTTTGGTTGACCACCACTGCATGAGCTAG Experimental SGN-U573065 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|195549551|gb|ACG50003.1| (e_value=9e-138) salt; (*ATH) AT1G19180.1 (e_value=6e-24) | Symbol: None | expressed protein | chr1:6622085-6623611 FORWARD | Aliases: T29M8.5, T29M8_5; (*SWP) sp|Q9LMA8|TI10A_ARATH (e_value=5e-23) Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A; Solyc03g122190.2.1 genomic_reference:SL2.40ch03 gene_region:64155650-64158036 transcript_region:SL2.40ch03:64155650..64158036- go_terms:GO:0005515 functional_description:"Jasmonate ZIM domain 2 (AHRD V1 **-- C7SCY2_CATRO); contains Interpro domain(s) IPR010399 Tify " 4 4 7 18 opLeV0100001142 sgn|U214705 GAGGTGCTTCCTTAAAGGGTCCCGAGTTTGCAACCATTGTTAATTCTGTAACTGCGAAGAAGGTAGCTGC Experimental SGN-U581594 Tomato 200607#2 [67 ESTs aligned] (*GB) gi|1351271|sp|P48496|TPIC_SPIOL (e_value=2e-152) Triosephosphate isomerase, chloroplast precursor (TIM); (*ATH) AT2G21170.1 (e_value=3e-141) Symbol: None | triosephosphate isomerase, chloroplast, putative, similar to Triosephosphate isomerase, chloroplast precursor: SP:P48496 from Spinacia oleracea, SP:P46225 from Secale cereale | chr2:9077835-9080304 REVERSE | Aliases: F26H11.7, F26H11_... ; (*SWP) sp|P48496|TPIC_SPIOL (e_value=1e-153) Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1; Solyc01g111120.2.1 genomic_reference:SL2.40ch01 gene_region:89253979-89260194 transcript_region:SL2.40ch01:89253979..89260194- go_terms:GO:0005515,GO:0004807 functional_description:"Triosephosphate isomerase (AHRD V1 **** D6N3G7_GOSHI); contains Interpro domain(s) IPR000652 Triosephosphate isomerase " 2 7 17 19 opLeV0100001143 sgn|U216336 TGGAAGACATGGGTGTGAATAGCTATCGTTTCTCCATCTCATGGGCAAGA Experimental SGN-U577736 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157360451|emb|CAO69674.1| (e_value=3e-84) unnamed; (*ATH) AT4G21760.1 (e_value=8e-81) Symbol: None | glycosyl hydrolase family 1 protein, contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to dalcochinin 8'-O-beta-glucoside beta-glucosidase precursor (GI:6118076) (Dalb... ; (*SWP) sp|P26205|BGLT_TRIRP (e_value=4e-54) Cyanogenic beta-glucosidase (Fragment) OS=Trifolium repens GN=LI; Solyc02g080310.2.1 genomic_reference:SL2.40ch02 gene_region:39140632-39145281 transcript_region:SL2.40ch02:39140632..39145281+ go_terms:GO:0047782 functional_description:"Beta-glucosidase 47 (AHRD V1 **** D7MEP5_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 " 2 3 17 19 opLeV0100001144 sgn|U227144 ATTTTTCCATACTTTTCCACTAAACTTGAGCCCAAACTTCCGGGTTTGGAACTACCCTTGCAACACCTAA Experimental SGN-U582318 Tomato 200607#2 [5 ESTs aligned] \N \N 2 7 1 18 opLeV0100001145 sgn|U226632 ATGCTGTTGGTCGTAGCATTAACTTGGGGGGTCAAACTGCTCTAGCATTACGCATAGTGCTGGCACTTTT Experimental SGN-U566326 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157360803|emb|CAO70404.1| (e_value=9e-128) unnamed; (*ATH) AT5G52030.2 (e_value=3e-117) | Symbol: None | TraB protein-related | chr5:21145355-21147316 FORWARD | Aliases: None; (*SWP) sp|Q9H4I3|TRABD_HUMAN (e_value=2e-14) TraB domain-containing protein OS=Homo sapiens GN=TRABD; Solyc03g026260.2.1 genomic_reference:SL2.40ch03 gene_region:8081847-8084677 transcript_region:SL2.40ch03:8081847..8084677- functional_description:"TraB family protein (AHRD V1 *-*- D7KED1_ARALY); contains Interpro domain(s) IPR002816 Pheromone shutdown-related, TraB " 2 3 1 18 opLeV0100001146 sgn|U231498 CAGAAGCTGGAAAGTATGACCTATCTTAATCTCTCCTCCAACAATCTCAAAGGCCCAATTCCAATTGAGC Experimental SGN-U582105 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157339349|emb|CAO43890.1| (e_value=8e-103) unnamed; (*ATH) AT2G26330.1 (e_value=4e-99) Symbol: None | leucine-rich repeat protein kinase, putative (ERECTA), identical to uncharacterized receptor protein kinase ERECTA (Arabidopsis thaliana) gi:1389566:dbj:BAA11869; contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein... ; (*SWP) sp|Q9LHP4|RCH2_ARATH (e_value=5e-37) Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2; Solyc08g061560.2.1 genomic_reference:SL2.40ch08 gene_region:46197158-46204157 transcript_region:SL2.40ch08:46197158..46204157- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK" 2 7 5 18 opLeV0100001147 sgn|U217373 TTTCTCTCCCATCCTTCTGCCATGGGAGCTGCATTTACTGCACAAGGACAAGTTGCTGCAGGCAACAAAT Experimental SGN-U571919 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|157338008|emb|CAO39052.1| (e_value=9e-71) unnamed; (*ATH) AT5G54680.1 (e_value=8e-63) | Symbol: None | basic helix-loop-helix (bHLH) family protein, similar to unknown protein (pir :B71406) | chr5:22234286-22236830 FORWARD | Aliases: K5F14.2, K5F14_2; Solyc07g052670.2.1 genomic_reference:SL2.40ch07 gene_region:58439470-58444048 transcript_region:SL2.40ch07:58439470..58444048- go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **** D6MKL1_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding " 2 3 5 18 opLeV0100001148 sgn|U242650 CTGTTATTCCCTGCCAGCACTAGGACAGCTTCCTTGTTTAAAATTCCTTTACATTAGAGGGATGCATGGA Experimental SGN-U590119 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|4689223|gb|AAD27815.1|AF118127_1 (e_value=3e-80) disease; (*ATH) AT3G14470.1 (e_value=3e-18) | Symbol: None | disease resistance protein (NBS-LRR class), putative, domain signature NBS-LRR exists, suggestive of a disease resistance protein. | chr3:4857947-4861254 FORWARD | Aliases: MOA2.9; (*SWP) sp|Q9LRR4|R13L1_ARATH (e_value=3e-17) Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1; Solyc11g069660.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51371454-51374081 transcript_region:SL2.40ch11:51371454..51374081- go_terms:GO:0006915 functional_description:"Nbs-lrr, resistance protein" 4 7 17 19 opLeV0100001149 sgn|U220321 TCAGGTTGGGAGAATGCTAGTGGGTGGCGTGAAGGTGGTTGGCATCTATGTATGGACCAATGAGAGCTCA Experimental SGN-U595627 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157335731|emb|CAO61561.1| (e_value=7e-57) unnamed; (*ATH) AT3G28670.1 (e_value=2e-53) | Symbol: None | expressed protein | chr3:10745060-10748400 FORWARD | Aliases: MZN14.14; Solyc02g014380.2.1 genomic_reference:SL2.40ch02 gene_region:7193767-7200167 transcript_region:SL2.40ch02:7193767..7200167+ go_terms:GO:0055114 functional_description:"Protein odr-4 homolog (AHRD V1 ***- ODR4_MOUSE); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing " 4 3 17 19 opLeV0100001150 sgn|U222384 GATAATGGAAGTGGAGATAAGGATGTGGTTCCTAGTGCTGGATTTTGGGCAGTTCCTGCTAGGCCGGATT Experimental SGN-U581159 Tomato 200607#2 [59 ESTs aligned] (*GB) gi|170676244|gb|ACB30361.1| (e_value=8e-71) MYB; (*ATH) AT5G23280.1 (e_value=1e-56) | Symbol: None | TCP family transcription factor, putative, similar to PCF2 ((GI:2580440) Oryza sativa) | chr5:7842974-7844278 FORWARD | Aliases: MKD15.14, MKD15_14; (*SWP) sp|Q9FMX2|TCP7_ARATH (e_value=1e-55) Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7; Solyc01g008230.2.1 genomic_reference:SL2.40ch01 gene_region:2359382-2360678 transcript_region:SL2.40ch01:2359382..2360678- go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP " 4 7 1 18 opLeV0100001151 sgn|U223109 GCCATCGTCGTTTGTGAGATTTCTAAGAATCGAAGAGTAACAGTTAGGAACTTTGGAGGAAGGGTAATGG Experimental SGN-U583834 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147846591|emb|CAN79502.1| (e_value=2e-32) hypothetical; (*ATH) AT5G09250.1 (e_value=4e-29) Symbol: None | transcriptional coactivator p15 (PC4) family protein, similar to SP:P11031 Activated RNA polymerase II transcriptional coactivator p15 precursor (PC4) (p14) (Single-stranded DNA binding protein p9) {Mus musculus}; contains Pfam profil... ; (*SWP) sp|O65154|KIWI_ARATH (e_value=3e-28) RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI; Solyc02g061790.2.1 genomic_reference:SL2.40ch02 gene_region:27884732-27888000 transcript_region:SL2.40ch02:27884732..27888000+ go_terms:GO:0003713,GO:0003697 functional_description:"Activated RNA polymerase II transcriptional coactivator p15 (AHRD V1 **** C1BJV8_OSMMO); contains Interpro domain(s) IPR003173 Transcriptional coactivator p15 " 4 3 1 18 opLeV0100001152 AY576001 ACAGCTTGAAGTTGGAGGGAATGTTCAAGGTATCTTTGATCTAGGACCTGGCAGATTTGGTTCGGAGGCT Experimental SGN-U570695 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|49659726|gb|AAT68187.1| (e_value=0) carotenoid cleavage dioxygenase 1A [Lycopersicon esculentum]; (*ATH) AT3G63520.1 (e_value=0) Symbol: None | 9-cis-epoxycarotenoid dioxygenase / neoxanthin cleavage enzyme / NCED1 / carotenoid cleavage dioxygenase 1 (CCD1), identical to putative 9-cis-epoxy-carotenoid dioxygenase (GI:3096910); contains Pfam profile PF03055: Retinal pigment e... ; (*SWP) sp|Q84KG5|CCD_CROSA (e_value=0) Carotenoid cleavage dioxygenase OS=Crocus sativus GN=CCD; Solyc01g087250.2.1 genomic_reference:SL2.40ch01 gene_region:73945385-73956019 transcript_region:SL2.40ch01:73945385..73956019- go_terms:GO:0045549 functional_description:"Carotenoid cleavage dioxygenase 1A" 4 7 5 18 opLeV0100001153 sgn|U217054 ATGAGGCAACAAAGAATAGTCTTGTTGCTGGGAGGAAGTTTGGGGCTTCACACTTTGTTTTGCTGTCTGC Experimental SGN-U586592 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|157336334|emb|CAO71019.1| (e_value=4e-180) unnamed; (*ATH) AT5G18660.1 (e_value=2e-167) | Symbol: None | Encodes a protein with 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity. Mutants accumulate divinyl chlorophyll rather than monovinyl chlorophyll. | chr5:6220783-6222230 REVERSE | Aliases: T1A4.40, T1A4_40; Solyc01g067290.2.1 genomic_reference:SL2.40ch01 gene_region:68104891-68106498 transcript_region:SL2.40ch01:68104891..68106498+ go_terms:GO:0051744 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 **-- C8RY11_9RHOB); contains Interpro domain(s) IPR016040 NAD(P)-binding domain " 4 3 5 18 opLeV0100001154 sgn|U220163 GGAGAAGGAACTTCTTGGTACAGCAGCAGTTCAAGACTTCATCTGCTCTCAACTGTGATCGTTGCACAGA Experimental SGN-U563080 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|15242048|ref|NP_200527.1| (e_value=2e-46) Macrophage migration inhibitory factor (MIF) family [Arabidopsis thaliana]; (*ATH) AT5G57170.1 (e_value=2e-48) | Symbol: None | macrophage migration inhibitory factor family protein / MIF family protein, contains Pfam profile: PF01187 Macrophage migration inhibitory factor(MIF) | chr5:23179300-23180506 REVERSE | Aliases: MUL3.12, MUL3_12; (*SWP) sp|P91850|MIFH_BRUMA (e_value=4e-15) Macrophage migration inhibitory factor homolog OS=Brugia malayi GN=BMBAC01P19.1; \N \N 2 7 19 19 opLeV0100001155 sgn|U225683 TGACCACGATGGTTGTGTCGTGGTGCCTTGTCGAGCTCATCCGCTATCCTTATTACCTTCTCCTTCTGCT Experimental SGN-U564353 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|66816247|ref|XP_642133.1| (e_value=3e-36) hypothetical protein DDB0204430 [Dictyostelium discoideum]; (*ATH) AT5G10480.1 (e_value=7e-37) Symbol: None | protein tyrosine phosphatase-like protein, putative (PAS2), identical to PEPINO/PASTICCINO2 protein GI:24411193, GI:24575153 from (Arabidopsis thaliana); contains Pfam:04387: protein tyrosine phosphatase-like protein | chr5:3297828-33... ; (*SWP) sp|Q5ZM57|PTAD1_CHICK (e_value=2e-23) Protein tyrosine phosphatase-like protein PTPLAD1 OS=Gallus gallus GN=PTPLAD1; \N \N 2 3 19 19 opLeV0100001156 sgn|U233510 AAAGAAGGTACCTTGTATTCTTCTTTCGGCAATGAGGGCACCTTCCCTTTTTTGTAGTTATCTTCTGAAA Experimental SGN-U582150 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|18138038|emb|CAD10626.1| (e_value=1e-156) extensin-like protein Ext1 [Lycopersicon esculentum]; (*ATH) AT5G09530.1 (e_value=8e-19) | Symbol: None | hydroxyproline-rich glycoprotein family protein, contains proline-rich extensin domains, INTERPRO:IPR002965 | chr5:2959735-2961272 REVERSE | Aliases: T5E8.2; (*SWP) sp|Q25460|FP1_MYTED (e_value=8e-13) Adhesive plaque matrix protein (Fragment) OS=Mytilus edulis GN=FP1; Solyc12g049150.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:46025362-46026699 transcript_region:SL2.40ch12:46025362..46026699- functional_description:"Extensin-like protein Ext1 (AHRD V1 ***- Q8VWM5_SOLLC)" 2 7 3 18 opLeV0100001157 sgn|U226415 TCATCATCGTAGCCACTTGAATCGATGTTAGACTCGTCAACGTTCAAACGACCTTCAAGCATGTTTACTA Experimental SGN-U570003 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147781733|emb|CAN61169.1| (e_value=1e-70) hypothetical; (*ATH) AT1G53430.1 (e_value=2e-57) | Symbol: None | leucine-rich repeat family protein / protein kinase family protein, contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain | chr1:19938835-19944756 FORWARD | Aliases: T3F20.25, T3F20_25; (*SWP) sp|Q9CAL2|CRK3_ARATH (e_value=3e-32) Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3; Solyc02g071860.2.1 genomic_reference:SL2.40ch02 gene_region:35784232-35794056 transcript_region:SL2.40ch02:35784232..35794056- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like kinase, RLK" 2 3 3 18 opLeV0100001158 sgn|U232039 CTGTTCACAAATAATGAGTGCAAAATACACAAAAAATACAGACCAAATTGCACAGCTCTTTTTTCTATTA Experimental SGN-U578840 Tomato 200607#2 [56 ESTs aligned] (*GB) gi|3334406|sp|O24011|VATL_SOLLC (e_value=4e-56) RecName:; (*ATH) AT4G34720.1 (e_value=1e-56) Symbol: None | vacuolar ATP synthase 16 kDa proteolipid subunit 1 / V-ATPase 16 kDa proteolipid subunit 1 (AVAP1) (AVA-P1), identical to SP:P59227 Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16 kDa proteolipid subu... ; (*SWP) sp|O24011|VATL_SOLLC (e_value=2e-57) Vacuolar ATP synthase 16 kDa proteolipid subunit OS=Solanum lycopersicum; \N \N 2 7 7 18 opLeV0100001159 sgn|U233391 CTGTCCGATAGGGTCTTTCACTCATCCTCTTCTAGCAAACTCGAAGGTACTGGATGAAAGTCTATTGCCC Experimental SGN-U591764 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|166234051|sp|A5A7I7|CDPK4_SOLTU (e_value=2e-33) Calcium-dependent; (*ATH) AT2G17290.1 (e_value=1e-25) Symbol: None | calcium-dependent protein kinase isoform 6 (CPK6), identical to calmodulin-domain protein kinase CDPK isoform 6 (Arabidopsis thaliana) gi:1399275:gb:AAB03246; contains protein kinase domain, Pfam:PF00069; contains EF hand domain (calc... ; (*SWP) sp|A5A7I7|CDPK4_SOLTU (e_value=1e-34) Calcium-dependent protein kinases 4 OS=Solanum tuberosum GN=CDPK4; \N \N 2 3 7 18 opLeV0100001160 sgn|U217293 TCGCGTGAGGATGGTGGCAGCCGAGAATTGCAGACAGAATGTGGACACCATGGTCATATATTAGCTCTTT Experimental SGN-U574287 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|55976440|sp|Q6QNU4|DDB1_SOLLC (e_value=0) RecName:; (*ATH) AT4G05420.1 (e_value=0) | Symbol: None | UV-damaged DNA-binding protein, putative, similar to UV-damaged DNA binding protein (GI:12082087) (Oryza sativa); contains Pfam PF03178 : CPSF A subunit region | chr4:2746118-2752940 FORWARD | Aliases: C6L9.100, C6L9_100; (*SWP) sp|Q6QNU4|DDB1_SOLLC (e_value=0) DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1; Solyc02g021650.2.1 genomic_reference:SL2.40ch02 gene_region:14069797-14090192 transcript_region:SL2.40ch02:14069797..14090192- go_terms:GO:0005515,GO:0003684 functional_description:"DNA damage-binding protein 1 (AHRD V1 **** C0H989_SALSA); contains Interpro domain(s) IPR004871 Cleavage and polyadenylation specificity factor, A subunit, C-terminal " 4 7 19 19 opLeV0100001161 AF029984 AACTGCATCCCCTGTTGAACAGTTTCGTCATTCATTGGAACAGGGTTCTGAAGTGTCAATTAAGGAGCTG Experimental SGN-U592176 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|4090943|gb|AAC98912.1| (e_value=1e-38) COP1 homolog [Lycopersicon esculentum]; (*ATH) AT2G32950.1 (e_value=4e-30) | Symbol: None | COP1 regulatory protein, photomorphogenesis repressor; identical to COP1 regulatory protein/FUSCA protein FUS1 GI:402685 SP:P43254 | chr2:13985019-13990608 FORWARD | Aliases: T21L14.11, T21L14_11; (*SWP) sp|P43254|COP1_ARATH (e_value=3e-29) E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1; Solyc12g005950.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:576268-587430 transcript_region:SL2.40ch12:576268..587430- go_terms:GO:0008270 functional_description:"WD-repeat protein (AHRD V1 *--- B0JNY6_MICAN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region " 4 3 19 19 opLeV0100001162 sgn|U213158 AGAATACTGCTCTTCACTATGCTGCTGGATATGGTAGAAAGGAGTGTGTAGCACTGCTGCTGGAGAATGG Experimental SGN-U584412 Tomato 200607#2 [161 ESTs aligned] (*GB) gi|13310811|gb|AAK18619.1|AF352797_1 (e_value=2e-160) ankyrin-repeat; (*ATH) AT2G17390.1 (e_value=2e-108) | Symbol: None | ankyrin repeat family protein, contains ankyrin repeats, Pfam:PF00023 | chr2:7562732-7565120 FORWARD | Aliases: F5J6.15, F5J6_15; (*SWP) sp|Q9SAR5|AKR2_ARATH (e_value=5e-104) Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2; Solyc01g104170.2.1 genomic_reference:SL2.40ch01 gene_region:84393496-84398307 transcript_region:SL2.40ch01:84393496..84398307- go_terms:GO:0008381 functional_description:"Ankyrin repeat domain-containing protein 2 (AHRD V1 ***- B6TNC0_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin " 4 3 3 18 opLeV0100001163 sgn|U215317 TGTCTAATGACCCATACGAAGGGTTGTTTAGATGACTCTAAGCCAAGTGCAAGTTCAATCATTTGGGATG Experimental SGN-U580322 Tomato 200607#2 [38 ESTs aligned] (*GB) gi|171854647|dbj|BAG16513.1| (e_value=5e-169) flavonoid; (*ATH) AT2G36780.1 (e_value=5e-150) | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr2:15424569-15426233 REVERSE | Aliases: F13K3.18, F13K3_18; (*SWP) sp|Q9ZQ99|COGT1_ARATH (e_value=4e-149) Cytokinin-O-glucosyltransferase 1 OS=Arabidopsis thaliana GN=UGT73C1; Solyc12g042600.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43397046-43398934 transcript_region:SL2.40ch12:43397046..43398934- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase " 4 7 7 18 opLeV0100001164 sgn|U228638 TATGAGAGTTAAGGAAAATATAGTTAAAGGGTCTCATGGAGAAGCGGAGGTATCAGTGGAGGGAGATTGT Experimental SGN-U585103 Tomato 200607#2 [2 ESTs aligned] Solyc06g054660.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:33912813-33913136 transcript_region:SL2.40ch06:33912813..33913136+ functional_description:"Unknown Protein (AHRD V1)" 4 3 7 18 opLeV0100001165 sgn|U219667 ACAGAATGGTACGGTCAAATACCCAGCAGGCGAGAAGTCAACTCCTTGAGTCCCATTTGGCGAAATTGTT Experimental SGN-U575451 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|157350174|emb|CAO40112.1| (e_value=0) unnamed; (*ATH) AT4G02030.1 (e_value=0) | Symbol: None | expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g21170.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAR07074.1) | chr4:892176-897318 FORWARD | Aliases: T10M13.4, T10M13_4; (*SWP) sp|Q9UID3|CK002_HUMAN (e_value=4e-31) Uncharacterized protein C11orf2 OS=Homo sapiens GN=C11orf2; Solyc06g009650.2.1 genomic_reference:SL2.40ch06 gene_region:3588734-3602911 transcript_region:SL2.40ch06:3588734..3602911+ go_terms:GO:0042802 functional_description:"Protein fat-free homolog (AHRD V1 ***- FFR_DICDI); contains Interpro domain(s) IPR014812 Vps51/Vps67 " 1 2 17 19 opLeV0100001166 sgn|U227900 GGGCAAGCGACTGGCATGGAGTTCTTAATGCTCTGCACGAAAAGAACTTATCTGCAGTAATTCAACTACC Experimental SGN-U571734 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|30689268|ref|NP_173925.3| (e_value=2e-13) expressed protein [Arabidopsis thaliana]; (*ATH) AT1G25540.1 (e_value=2e-15) | Symbol: None | phytochrome and flowering time regulatory protein (PFT1), PMID: 12815435 | chr1:8969052-8974647 REVERSE | Aliases: F2J7.4, F2J7_4; Solyc05g009710.2.1 genomic_reference:SL2.40ch05 gene_region:3904941-3922357 transcript_region:SL2.40ch05:3904941..3922357- functional_description:"Mediator of RNA polymerase II transcription subunit 25 (AHRD V1 *-*- MED25_XENTR)" 1 6 1 18 opLeV0100001167 sgn|U214731 GTCGGCATATTCACTAGCTCCGTCAAGGATTTGTATGGGCAAGGAGCAAGAAGAATTGGGGTAACTTCAC Experimental SGN-U579441 Tomato 200607#2 [52 ESTs aligned] (*GB) gi|147769690|emb|CAN65529.1| (e_value=2e-158) hypothetical; (*ATH) AT3G16370.1 (e_value=2e-140) Symbol: None | GDSL-motif lipase/hydrolase family protein, similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from (Arabidopsis thaliana); contains Pfam profile: PF00657 Lipase Acylhydrolase with GDSL-like motif | chr3... ; (*SWP) sp|P40602|APG_ARATH (e_value=2e-53) Anter-specific proline-rich protein APG OS=Arabidopsis thaliana GN=APG; Solyc03g121180.2.1 genomic_reference:SL2.40ch03 gene_region:63413348-63415519 transcript_region:SL2.40ch03:63413348..63415519- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g22810 (AHRD V1 ***- GDL78_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL " 1 2 1 18 opLeV0100001168 sgn|U214156 CCAAAGTTTCAAGTGAAGGCTTCGCTTAAGGAGAAAGCTTTGACAGGACTGACAGCAGCTGCACTCACTG Experimental SGN-U579499 Tomato 200607#2 [66 ESTs aligned] (*GB) gi|118489268|gb|ABK96439.1| (e_value=2e-23) unknown; (*ATH) AT2G06520.1 (e_value=2e-15) | Symbol: None | membrane protein, putative, contains 2 transmembrane domains; | chr2:2587781-2588355 REVERSE | Aliases: T12H3.7, T12H3_7; Solyc05g025600.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:34412777-34413112 transcript_region:SL2.40ch05:34412777..34413112- go_terms:GO:0016020 functional_description:"Chloroplast photosystem II subunit X (Fragment) (AHRD V1 ***- B1PPX5_9MYRT); contains Interpro domain(s) IPR009518 Photosystem II protein PsbX " 1 6 5 18 opLeV0100001169 sgn|U217167 CAAGGCGGCAAGAATTATTGGTCCATAGTGGACTAGCTGAGAAACTCATCGATGCATGTTGTGAGATGGC Experimental SGN-U581151 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157352947|emb|CAO44837.1| (e_value=0) unnamed; (*ATH) AT3G16810.1 (e_value=0) | Symbol: None | pumilio/Puf RNA-binding domain-containing protein, contains Pfam profile:PF00806 Pumilio-family RNA binding domains | chr3:5723255-5727626 REVERSE | Aliases: K20I9.3; (*SWP) sp|Q15397|K0020_HUMAN (e_value=7e-54) Pumilio domain-containing protein KIAA0020 OS=Homo sapiens GN=KIAA0020; Solyc01g065580.2.1 genomic_reference:SL2.40ch01 gene_region:64325048-64330129 transcript_region:SL2.40ch01:64325048..64330129- go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio domain-containing protein KIAA0020 (AHRD V1 ***- B5X3V8_SALSA); contains Interpro domain(s) IPR011989 Armadillo-like helical " 1 2 5 18 opLeV0100001170 sgn|U214086 CTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTT Experimental SGN-U577639 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|15144512|gb|AAK84479.1| (e_value=1e-30) putative auxin growth promotor protein [Lycopersicon esculentum]; (*ATH) AT4G24530.1 (e_value=7e-21) Symbol: None | expressed protein, contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; previously annotated as 'PsRT17-1 like protein' based on similarity to PsRT17-1 (GP:1778376) (Pisum sativum) whi... ; \N \N 3 6 17 19 opLeV0100001171 sgn|U217705 GGAGGCTGGGCCTTGGGGCCTTAAATGGCTAGTGCAAGGAGATATAATTTAGGTTGCTCTATCTAGTTTG Experimental SGN-U564189 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157352952|emb|CAO44842.1| (e_value=3e-44) unnamed; (*ATH) AT5G11240.1 (e_value=4e-40) Symbol: None | transducin family protein / WD-40 repeat family protein, contains 3 WD-40 repeats (PF00400); similar to uncharacterized protein KIAA0007 (GI:1663708) {Homo sapiens} 1.2e-11 | chr5:3582564-3586987 FORWARD | Aliases: F2I11.130, F2I11_13... ; Solyc02g030080.2.1 genomic_reference:SL2.40ch02 gene_region:15755355-15764775 transcript_region:SL2.40ch02:15755355..15764775- go_terms:GO:0000166 functional_description:"WD-40 repeat protein (AHRD V1 *-*- B4D682_9BACT); contains Interpro domain(s) IPR017986 WD40 repeat, region " 3 2 17 19 opLeV0100001172 sgn|U219943 CCATCATACATGTACGCCTCTCCACCGCGTATGGTTTCATTCTCTTCTCATCAATATCCGGCTCAAACAA Experimental SGN-U563026 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157338794|emb|CAO42145.1| (e_value=5e-29) unnamed; (*ATH) AT1G68480.1 (e_value=4e-28) Symbol: None | similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:At1g13400.1); similar to zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD38321.1); contains InterPro domain Zn-finger, C2H2 type (... ; Solyc05g009380.2.1 genomic_reference:SL2.40ch05 gene_region:3536207-3540567 transcript_region:SL2.40ch05:3536207..3540567- go_terms:GO:0005622 functional_description:"EPF-type Cis2-His2 zinc finger transcription factor (AHRD V1 *--- D8SQF8_SELML); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type " 3 6 1 18 opLeV0100001173 sgn|U215284 GAAAGGGAAGTCCCAAAGGGCCTGCTCAATTTTGTGATCAACAGTTGGTCCGGGGTTATTCCTGGTCACA Experimental SGN-U580210 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|115110983|gb|ABI84104.1| (e_value=7e-102) GTP-binding; (*ATH) AT2G17800.1 (e_value=6e-103) Symbol: RAC1 | Rac-like GTP-binding protein ARAC1/ATGP2. Encodes a geranylgeranylated GTP binding protein. Involved in the auxin-activated 26S proteasome-dependent Aux/IAA proteolysis pathway. | chr2:7746954-7749237 FORWARD | Aliases: T17A5.14, T17A... ; (*SWP) sp|Q38902|RAC1_ARATH (e_value=5e-102) Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1; Solyc02g062020.2.1 genomic_reference:SL2.40ch02 gene_region:28182920-28187850 transcript_region:SL2.40ch02:28182920..28187850- go_terms:GO:0003924 functional_description:"Ras-like GTP-binding protein RHO (AHRD V1 **-- RHO_APLCA); contains Interpro domain(s) IPR003578 Ras small GTPase, Rho type " 3 2 1 18 opLeV0100001174 sgn|U220501 CATTCTATGGATCCAACACGAGCCAAGAGCACATCCGGATCGGGTCATTCATCGACCCATAAGCCCAACA Experimental SGN-U568472 Tomato 200607#2 [21 ESTs aligned] Solyc04g005480.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:323321-323833 transcript_region:SL2.40ch04:323321..323833- functional_description:"Unknown Protein (AHRD V1)" 3 6 5 18 opLeV0100001175 sgn|U223894 TGAGAAACACATATCCAAGCACGTGTAGGCCAGGTATTGACTATACGAGGACTTCTGTAGAGGTTTCTTG Experimental \N \N Solyc04g009240.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2713465-2716002 transcript_region:SL2.40ch04:2713465..2716002- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein" 3 2 5 18 opLeV0100001176 AF130423 ACTCCCCAATAGCATTTCCTCAGGCCATGCATATGGAAATGGACCATGAACCAGTCAGGAACAACCCTGT Experimental SGN-U583257 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|5524201|gb|AAD44161.1|AF130423_1 (e_value=0) cryptochrome; (*ATH) AT4G08920.1 (e_value=0) Symbol: None | cryptochrome 1 apoprotein (CRY1) / flavin-type blue-light photoreceptor (HY4), contains Pfam PF03441: FAD binding domain of DNA photolyase; member of Pfam PF00875: deoxyribodipyrimidine photolyase superfamily; 99% identical to Cryptoc... ; (*SWP) sp|Q43125|CRY1_ARATH (e_value=0) Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1; Solyc04g074180.2.1 genomic_reference:SL2.40ch04 gene_region:57772528-57777909 transcript_region:SL2.40ch04:57772528..57777909+ go_terms:GO:0042803 functional_description:"Cryptochrome 1a" 1 6 19 19 opLeV0100001177 sgn|U213857 GCTCCCAATGGCGACTAAATTCCCATTTTTCTAGGGTTTCTGATTCTCCGCAGAATCGCCGAGAGATAGA Experimental \N \N Solyc08g014550.2.1 genomic_reference:SL2.40ch08 gene_region:4642663-4644841 transcript_region:SL2.40ch08:4642663..4644841+ go_terms:GO:0003735 functional_description:"Ribosomal L9-like protein (AHRD V1 ***- B3TLR1_ELAGV); contains Interpro domain(s) IPR000702 Ribosomal protein L6 " 1 2 19 19 opLeV0100001178 sgn|U217509 CACTTGGGTATGGGCTGTGCTTCCTGAACCTCACCTTTGATGGTTTCACCAATGCTACTCAGGATTCGAT Experimental SGN-U583061 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|48209877|gb|AAT40483.1| (e_value=0) putative UDP-galactose transporter [Solanum demissum]; (*ATH) AT1G14360.1 (e_value=2e-167) | Symbol: None | UDP-galactose/UDP-glucose transporter, putative, very similar to UDP-galactose/UDP-glucose transporter (GI:22651763) {Arabidopsis thaliana} | chr1:4910624-4913147 REVERSE | Aliases: F14L17.13, F14L17_13; (*SWP) sp|Q8AXS6|S35B1_XENTR (e_value=1e-42) Solute carrier family 35 member B1 OS=Xenopus tropicalis GN=slc35b1; Solyc05g007150.2.1 genomic_reference:SL2.40ch05 gene_region:1746851-1751800 transcript_region:SL2.40ch05:1746851..1751800+ go_terms:GO:0005459 functional_description:"UDP-galactose transporter 3 (AHRD V1 **** D7KBJ4_ARALY); contains Interpro domain(s) IPR013657 UAA transporter " 1 6 3 18 opLeV0100001179 sgn|U217620 CGGGGGAGTCTCGATTGAGGCAAATTCTGTTTATGGTGCACTAAGAGGGCTTGAGACATTGAGTCAGTTA Experimental SGN-U577201 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157351401|emb|CAO41588.1| (e_value=2e-110) unnamed; (*ATH) AT3G55260.1 (e_value=4e-107) | Symbol: None | glycosyl hydrolase family 20 protein, similar to beta-hexosaminidase A SP:P13723 from (Dictyostelium discoideum) | chr3:20500226-20504053 FORWARD | Aliases: T26I12.140; (*SWP) sp|Q54K56|HEXB2_DICDI (e_value=1e-49) Beta-hexosaminidase subunit B2 OS=Dictyostelium discoideum GN=hexb2; Solyc05g054710.2.1 genomic_reference:SL2.40ch05 gene_region:63711436-63721172 transcript_region:SL2.40ch05:63711436..63721172- go_terms:GO:0016231 functional_description:"Beta-hexosaminidase b (AHRD V1 **** Q17BL1_AEDAE); contains Interpro domain(s) IPR001540 Glycoside hydrolase, family 20 " 1 2 3 18 opLeV0100001180 sgn|U221722 AATGTCACACAGGAGTGAGGACCATGAATTGGCTTTCTGGTGTTATATCCCACATATTTCCGTGTCTATG Experimental SGN-U568246 Tomato 200607#2 [14 ESTs aligned] \N \N 1 2 7 18 opLeV0100001181 sgn|U218699 GTGTTGGAACATTGGAATTCCGATCAGTTGCTGAACCAGTCACCCAGATACAGAAAGCACTGGCAAAGGA Experimental SGN-U568150 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|125558821|gb|EAZ04357.1| (e_value=0) hypothetical; (*ATH) AT2G29990.1 (e_value=0) Symbol: None | pyridine nucleotide-disulphide oxidoreductase family protein, similar to SP:P32340 Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor (EC 1.6.5.3) (Internal NADH dehydrogenase) {Saccharomyces cerevisiae} ; co... ; (*SWP) sp|Q55CD9|NDH_DICDI (e_value=7e-76) Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_0238855; Solyc02g078900.2.1 genomic_reference:SL2.40ch02 gene_region:38108392-38113405 transcript_region:SL2.40ch02:38108392..38113405- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** Q38A31_9TRYP); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase " 3 6 19 19 opLeV0100001182 sgn|U227893 GGAGGATATTGTGCTATGGTACACACTTGGATTTCATCATGCACCTTGCCAAGAAGATTATCCTATAATG Experimental SGN-U571379 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157336473|emb|CAO71158.1| (e_value=1e-102) unnamed; (*ATH) AT4G14940.1 (e_value=3e-96) | Symbol: None | copper amine oxidase, putative, highly similar to copper amine oxidase (Arabidopsis thaliana) gi:2654118:gb:AAB87690 | chr4:8541875-8544300 FORWARD | Aliases: DL3510W, FCAALL.145; (*SWP) sp|Q43077|AMO_PEA (e_value=8e-80) Amine oxidase [copper-containing] OS=Pisum sativum; Solyc09g075940.2.1 genomic_reference:SL2.40ch09 gene_region:63056941-63059572 transcript_region:SL2.40ch09:63056941..63059572- go_terms:GO:0055114 functional_description:"Primary amine oxidase (AHRD V1 ***- B9RSR2_RICCO); contains Interpro domain(s) IPR000269 Copper amine oxidase " 3 2 19 19 opLeV0100001183 sgn|U233831 CACTAACATAAAGAATCCTCCTCCTGGCTTTCCACAAATTTTCCACCCAAATGAAAGGAAATTGCCCCGA Experimental SGN-U595361 Tomato 200607#2 [1 ESTs aligned] \N \N 3 6 3 18 opLeV0100001184 sgn|U218814 GTGCTAATTCGGGCCGGACCGAGCCCGTTAGGAATCCGATCCCTCCAATTAAAACTGGAACTAAGAAGGA Experimental SGN-U571303 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|147768317|emb|CAN78123.1| (e_value=5e-59) hypothetical; (*ATH) AT1G28280.1 (e_value=3e-50) | Symbol: None | VQ motif-containing protein, contains PF05678: VQ motif | chr1:9886064-9887465 REVERSE | Aliases: F3H9.7, F3H9_7; Solyc02g078030.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37420947-37421738 transcript_region:SL2.40ch02:37420947..37421738- functional_description:"DNA-binding WRKY VQ (AHRD V1 ***- Q2HTS9_MEDTR); contains Interpro domain(s) IPR008889 VQ " 3 2 3 18 opLeV0100001185 sgn|U220258 AGTTTCCCTGTCCTTAGCAATAACAGAGCTAACCACAGTTCCATACTTAGAAAAATGGTCCTTAAGCATC Experimental SGN-U569547 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|116787926|gb|ABK24693.1| (e_value=7e-60) unknown; (*ATH) AT1G58470.1 (e_value=4e-56) Symbol: None | RNA-binding protein (XF41), identical to RNA binding protein GI:18181938 from (Arabidopsis thaliana); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain 15450911 gb AY054536.1 | chr1:21730... ; (*SWP) sp|Q96DH6|MSI2H_HUMAN (e_value=5e-37) RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2; Solyc04g077520.2.1 genomic_reference:SL2.40ch04 gene_region:60070423-60072137 transcript_region:SL2.40ch04:60070423..60072137- go_terms:GO:0003730 functional_description:"RNA binding protein (AHRD V1 **-* Q9C652_ARATH); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait " 3 2 7 18 opLeV0100001186 sgn|U218236 CGGCTTAGGAGCATGGTGGATTCGTTAAAGCCAGTGGTTGCCGATTTCATGTCACTCCCGATTCCAACCA Experimental SGN-U581022 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|147858838|emb|CAN82902.1| (e_value=6e-69) hypothetical; (*ATH) AT4G14430.1 (e_value=6e-71) Symbol: None | enoyl-CoA hydratase/isomerase family protein, low siimilarity to 2-cyclohexenylcarbonyl CoA isomerase (Streptomyces collinus) GI:8133118, enoyl-CoA isomerase (Escherichia coli) GI:2764829; contains Pfam profile PF00378 enoyl-CoA hydra... ; Solyc06g053670.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:33000055-33000774 transcript_region:SL2.40ch06:33000055..33000774- go_terms:GO:0004165 functional_description:"Enoyl-CoA hydratase/isomerase family protein (AHRD V1 **** D7MH17_ARALY); contains Interpro domain(s) IPR001753 Crotonase, core " 1 5 17 19 opLeV0100001187 sgn|U225127 GGAACAGACGCTTTGTCAGTGTACGTGAGCAATGTAACCTGCAATTGTGATACCCCTGATGGTTATTGTC Experimental SGN-U568430 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157354677|emb|CAO47995.1| (e_value=2e-104) unnamed; (*ATH) AT1G07650.1 (e_value=5e-74) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, similar to GB:AAC50043 from (Arabidopsis thaliana) (Plant Mol. Biol. 37 (4), 587-596 (1998)) | chr1:2359554-2366558 REVERSE | Aliases: F24B9.29, F24B9_29; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=4e-28) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2; Solyc02g071820.2.1 genomic_reference:SL2.40ch02 gene_region:35747122-35756024 transcript_region:SL2.40ch02:35747122..35756024- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like kinase, RLK" 1 1 17 19 opLeV0100001188 sgn|U213932 TTACCCGTGCATGCAATGTGCTGACATATTCTTCCTTAAGGCTGACATCTGTCAACTAGGCATGGACCAG Experimental SGN-U570149 Tomato 200607#2 [64 ESTs aligned] (*GB) gi|1841468|emb|CAA71881.1| (e_value=0) Tyrosyl-tRNA synthetase [Nicotiana tabacum]; (*ATH) AT2G33840.1 (e_value=5e-170) Symbol: None | tRNA synthetase class I (W and Y) family protein, similar to SP:P54577 Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosyl--tRNA ligase) (TyrRS) {Homo sapiens}; contains Pfam profile PF00579: tRNA synthetases class I (W and Y) | chr2:143220... ; (*SWP) sp|Q5UPJ7|SYY_MIMIV (e_value=8e-74) Tyrosyl-tRNA synthetase OS=Acanthamoeba polyphaga mimivirus GN=YARS; Solyc01g109360.2.1 genomic_reference:SL2.40ch01 gene_region:88097789-88103284 transcript_region:SL2.40ch01:88097789..88103284+ go_terms:GO:0004831,GO:0005153 functional_description:"Tyrosyl-tRNA synthetase (AHRD V1 **** P93363_TOBAC); contains Interpro domain(s) IPR016485 Tyrosine tRNA ligase, archaeal/eukaryotic " 1 5 1 18 opLeV0100001189 sgn|U214897 CATGAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGC Experimental SGN-U580589 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|192910878|gb|ACF06547.1| (e_value=1e-119) Mob1; (*ATH) AT5G45550.1 (e_value=4e-121) | Symbol: None | mob1/phocein family protein, contains Pfam profile: PF03637 Mob1/phocein family | chr5:18479444-18482248 FORWARD | Aliases: MFC19.22, MFC19_22; (*SWP) sp|Q54XJ0|MOB1A_DICDI (e_value=1e-84) Mps one binder kinase activator-like 1 homolog A OS=Dictyostelium discoideum GN=mobA; Solyc12g096060.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63478257-63483912 transcript_region:SL2.40ch12:63478257..63483912- go_terms:GO:0019900 functional_description:"Mps one binder kinase activator-like 1A (AHRD V1 **** B6U9F2_MAIZE); contains Interpro domain(s) IPR005301 Mob1/phocein " 1 1 1 18 opLeV0100001190 sgn|U224698 CAATTCTTTGTGCAAGGATGGTAGGCTTCTTGAAGCTGATGTAGTCCTAAGTGATATGATCAGTAGAGGG Experimental SGN-U565151 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157346282|emb|CAO15979.1| (e_value=2e-117) unnamed; (*ATH) AT5G12100.1 (e_value=2e-97) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr5:3911364-3914076 FORWARD | Aliases: MXC9.6, MXC9_6; (*SWP) sp|Q0WVK7|PPR12_ARATH (e_value=2e-45) Pentatricopeptide repeat-containing protein At1g05665, mitochondrial OS=Arabidopsis thaliana GN=At1g05665; Solyc12g099840.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65162719-65165091 transcript_region:SL2.40ch12:65162719..65165091- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat " 1 1 5 18 opLeV0100001191 sgn|U234106 CTCCTCCTCTCAGAATCCTTGAAGTGGAATCCTTCCAAAAGGTGGTGGATTTGGTTAATCCTGGAACCCA Experimental \N \N \N \N 3 5 17 19 opLeV0100001192 sgn|U217527 CTCGAGGAGGTCATATTTTTAATATTGATGGGGCTGGCTCAGATGGAAGACCAACCCCCAGATTTGCAGC Experimental SGN-U564668 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|157345817|emb|CAO15332.1| (e_value=9e-136) unnamed; (*ATH) AT5G04900.1 (e_value=1e-129) | Symbol: None | short-chain dehydrogenase/reductase (SDR) family protein, contains INTERPRO family IPR002198 Short-chain dehydrogenase/reductase (SDR) superfamily | chr5:1434816-1437326 FORWARD | Aliases: MUG13.25, MUG13_25; (*SWP) sp|P16542|DHK1_STRVN (e_value=4e-17) Granaticin polyketide synthase putative ketoacyl reductase 1 OS=Streptomyces violaceoruber GN=gra-orf5; Solyc05g032660.2.1 genomic_reference:SL2.40ch05 gene_region:43162183-43177288 transcript_region:SL2.40ch05:43162183..43177288- go_terms:GO:0050327,GO:0034256 functional_description:"Dehydrogenase/ reductase 3 (AHRD V1 *--* Q3INM6_NATPD); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase " 3 1 17 19 opLeV0100001193 sgn|U217119 GCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAGAATCGCCCG Experimental SGN-U567024 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|157343371|emb|CAO67422.1| (e_value=0) unnamed; (*ATH) AT3G11910.1 (e_value=0) Symbol: None | ubiquitin-specific protease, putative, strong similarity to ubiquitin-specific protease 12 (UBP12) (Arabidopsis thaliana) GI:11993471; contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF00917: MATH domain | chr3:... ; (*SWP) sp|Q84WU2|UBP13_ARATH (e_value=0) Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13; Solyc11g071700.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52183260-52203855 transcript_region:SL2.40ch11:52183260..52203855+ go_terms:GO:0004843,GO:0042803 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 **** Q2R2A3_ORYSJ); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 " 3 5 1 18 opLeV0100001194 sgn|U215669 ATGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAAC Experimental SGN-U577306 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|15226402|ref|NP_180415.1| (e_value=2e-94) hypothetical protein [Arabidopsis thaliana]; (*ATH) AT2G28480.1 (e_value=1e-96) | Symbol: None | expressed protein, contains Pfam profile PF01985: Uncharacterised protein family; expression supported by MPSS | chr2:12183719-12185108 REVERSE | Aliases: T17D12.4, T17D12_4; (*SWP) sp|Q6YYA3|CRS1_ORYSJ (e_value=5e-15) Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100; Solyc09g005270.2.1 genomic_reference:SL2.40ch09 gene_region:207702-211188 transcript_region:SL2.40ch09:207702..211188- go_terms:GO:0003723 functional_description:"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (AHRD V1 *--- CRS1_MAIZE); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain " 3 1 1 18 opLeV0100001195 sgn|U238236 CTTGACCGTTCAGATCGTCAATCGGAGTTCTTGATCGTCTGTTATCGCAGCTGGCGTAACCTGCATTTTT Experimental SGN-U571346 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|7688355|emb|CAB89831.1| (e_value=3e-57) Dof zinc finger protein [Solanum tuberosum]; (*ATH) AT5G02460.1 (e_value=1e-35) | Symbol: None | Dof-type zinc finger domain-containing protein, zinc finger protein OBP3, Arabidopsis thaliana, EMBL:AF155818 | chr5:539247-541056 REVERSE | Aliases: T22P11.50, T22P11_50; (*SWP) sp|Q9LZ56|DOF51_ARATH (e_value=9e-35) Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana GN=DOF5.1; Solyc11g062200.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46168561-46172066 transcript_region:SL2.40ch11:46168561..46172066- go_terms:GO:0003676,GO:0015074 functional_description:"Transposon Ty1-A Gag-Pol polyprotein (AHRD V1 *-*- YA11B_YEAST); contains Interpro domain(s) IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase " 3 5 5 18 opLeV0100001196 sgn|U222318 TGGAGGATATTGATAAGGAAATCAGTGAACTGAAACTATCAGTGAATACGCGAGGGAGGCTTGTCGCTAC Experimental SGN-U596722 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|108712099|gb|ABF99894.1| (e_value=2e-60) Actin-related; (*ATH) AT4G14147.1 (e_value=6e-62) Symbol: None | similar to putative ARP2/3 complex 20 kDa subunit, 3'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAO73272.1); contains InterPro domain ARP23 complex 20 kDa subunit (InterPro:IPR008384) | chr4:8154074-8156754 REVERSE | Aliase... ; (*SWP) sp|Q148J6|ARPC4_BOVIN (e_value=3e-44) Actin-related protein 2/3 complex subunit 4 OS=Bos taurus GN=ARPC4; Solyc12g098430.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64274593-64279444 transcript_region:SL2.40ch12:64274593..64279444+ go_terms:GO:0030674,GO:0051015 functional_description:"Actin-related protein 2/3 complex subunit 4 (AHRD V1 **** A2XP21_ORYSI); contains Interpro domain(s) IPR008384 ARP23 complex 20 kDa subunit " 3 1 5 18 opLeV0100001197 sgn|U212566 GCTGCACTTGCTGCAATTTACCATCAAATAATCATCAGAGCAATTCCATTCAAGAGTAGAGCTTAAGAGT Experimental SGN-U581534 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|2114050|dbj|BAA20076.1| (e_value=1e-158) water channel protein [Nicotiana excelsior]; (*ATH) AT1G01620.1 (e_value=1e-148) Symbol: None | plasma membrane intrinsic protein 1C (PIP1C) / aquaporin PIP1.3 (PIP1.3) / transmembrane protein B (TMPB), identical to plasma membrane intrinsic protein 1c SP:Q08733 from (Arabidopsis thaliana) | chr1:225722-227302 REVERSE | Aliases:... ; (*SWP) sp|Q08451|PIP1_SOLLC (e_value=5e-156) Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum; Solyc08g008050.2.1 genomic_reference:SL2.40ch08 gene_region:2541278-2544496 transcript_region:SL2.40ch08:2541278..2544496+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q8W507_TOBAC); contains Interpro domain(s) IPR012269 Aquaporin " 1 5 19 19 opLeV0100001198 sgn|U224951 TGCCTAAGGATATGCAATTAGCTAGACGTATTAGAGGTGAAAGGGCTTAAAATATAGTAACCAGAGTTGG Experimental SGN-U580517 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|55775689|gb|AAV65112.1| (e_value=2e-26) histone 3 [Camellia sinensis]; (*ATH) AT4G40040.2 (e_value=2e-28) Symbol: None | similar to histone H3.2 [Arabidopsis thaliana] (TAIR:At4g40030.1); similar to histone H3.2 protein [Mus pahari] (GB:CAA56575.1); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y (InterPro:IPR007124); contains InterPro domain Histo... ; (*SWP) sp|Q5MYA4|H32_CICIN (e_value=9e-28) Histone H3.2 OS=Cichorium intybus; Solyc12g056540.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47844331-47844741 transcript_region:SL2.40ch12:47844331..47844741- go_terms:GO:0003677,GO:0000786 functional_description:"Histone H3 (AHRD V1 ***- Q5S265_CAMSI); contains Interpro domain(s) IPR000164 Histone H3 " 1 1 19 19 opLeV0100001199 sgn|U214853 CAGCCATGACTGACAATTTCCCTTTTCGCCCATTCGATGTTCCTTGCATCTTCACCTTGAATTCCTTAGC Experimental SGN-U586105 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|145105398|gb|ABP35583.1| (e_value=2e-125) CBL-interacting; (*ATH) AT5G25110.1 (e_value=3e-115) | Symbol: None | CBL-interacting protein kinase 25 (CIPK25), identical to CBL-interacting protein kinase 25 (Arabidopsis thaliana) gi:17646697:gb:AAL41008 | chr5:8657629-8659325 REVERSE | Aliases: T11H3.120, T11H3_120; (*SWP) sp|Q8W1D5|CIPKP_ARATH (e_value=3e-114) CBL-interacting serine/threonine-protein kinase 25 OS=Arabidopsis thaliana GN=CIPK25; Solyc06g068450.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38807866-38809185 transcript_region:SL2.40ch06:38807866..38809185- go_terms:GO:0004679 functional_description:"CBL-interacting protein kinase (AHRD V1 **** A5YAI9_GOSHI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 1 5 3 18 opLeV0100001200 sgn|U226226 GGGAGTACTTGGTTGATTTGATCGGTAAGCCTGGAGTTTTAAGCGAACCAGATTCCTTGTTGAATGGTCC Experimental SGN-U566677 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|5669642|gb|AAD46406.1|AF096250_1 (e_value=0) ethylene-responsive; (*ATH) AT5G03730.2 (e_value=9e-141) | Symbol: None | serine/threonine protein kinase (CTR1), identical to serine/threonine-protein kinase CTR1 (Arabidopsis thaliana) SWISS-PROT:Q05609 | chr5:974507-979848 REVERSE | Aliases: None; (*SWP) sp|Q05609|CTR1_ARATH (e_value=8e-140) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1; Solyc10g083610.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62712543-62724546 transcript_region:SL2.40ch10:62712543..62724546- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 *-*- Q1SMZ9_MEDTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 1 1 3 18 opLeV0100001201 sgn|U236120 TCCCCTTGTTAGTCCTTACCCTGTACCACCTGTTGTGCCGCCCAAAGAGGGGAACATAAATTTCCCCCAA Experimental SGN-U600959 Tomato 200607#2 [1 ESTs aligned] \N \N 1 1 7 18 opLeV0100001202 sgn|U232810 TGGCTTTTGTGTGTGCCTGAAAGTGGATTCACACACTAAATTTTTTGTGCTTTTCAAAACTACAGGAGGC Experimental SGN-U588291 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|68300918|gb|AAY89389.1| (e_value=1e-70) thylakoid-bound ascorbate peroxidase 6 [Lycopersicon esculentum]; (*ATH) AT4G08390.1 (e_value=6e-46) | Symbol: None | L-ascorbate peroxidase, stromal (sAPX), identical to stromal ascorbate peroxidase (Arabidopsis thaliana) gi:1419388:emb:CAA67425 | chr4:5314902-5317453 FORWARD | Aliases: T28D5.80, T28D5_80; (*SWP) sp|Q42592|APXS_ARATH (e_value=6e-45) L-ascorbate peroxidase S, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=APXS; \N \N 3 5 19 19 opLeV0100001203 AF385366 TGATGGAGGATTTTTCACTCGATCCGCAGTGCAAAAATTCGTGCAAGATCCAAAGTATCCCGGGATACTC Experimental SGN-U577684 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|75221017|sp|Q40593|VDE_TOBAC (e_value=0) Violaxanthin; (*ATH) AT1G08550.2 (e_value=5e-160) | Symbol: None | similar to violaxanthin de-epoxidase-related [Arabidopsis thaliana] (TAIR:At2g21860.1); similar to violaxanthin de-epoxidase [Camellia sinensis] (GB:AAL67858.2) | chr1:2706927-2709534 FORWARD | Aliases: None; (*SWP) sp|Q40593|VDE_TOBAC (e_value=0) Violaxanthin de-epoxidase, chloroplastic OS=Nicotiana tabacum GN=VDE1; Solyc04g050930.2.1 genomic_reference:SL2.40ch04 gene_region:48132067-48135623 transcript_region:SL2.40ch04:48132067..48135623- go_terms:GO:0046422 functional_description:"Violaxanthin de-epoxidase" 3 1 19 19 opLeV0100001204 sgn|U231664 TGTATATAGTAGGTGGTGCGGTGGGAACAGTTCTGGCATGGGCTTGGTTGGTTTTGCTTGGTTCAAGTGC Experimental SGN-U586159 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157338759|emb|CAO42110.1| (e_value=2e-87) unnamed; (*ATH) AT1G25500.2 (e_value=1e-78) | Symbol: None | choline transporter-related, contains weak similarity to CD92 protein (Homo sapiens) gi:16945323:emb:CAC82175 | chr1:8955295-8957936 REVERSE | Aliases: None; Solyc05g009670.2.1 genomic_reference:SL2.40ch05 gene_region:3865942-3872602 transcript_region:SL2.40ch05:3865942..3872602- functional_description:"Choline transporter-like protein (AHRD V1 **-- Q6EP45_ORYSJ); contains Interpro domain(s) IPR007603 Protein of unknown function DUF580 " 3 5 3 18 opLeV0100001205 sgn|U221300 TGCCATGATGAGGAAAGGTAATCCAGATTTTGTCAACAATAGGCGCCGCAGATGAAACACACGAAACTCA Experimental SGN-U586589 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|198250370|gb|ACH85192.1| (e_value=2e-78) calcium-dependent; (*ATH) AT4G23650.1 (e_value=7e-67) Symbol: None | calcium-dependent protein kinase, putative / CDPK, putative, similar to calcium-dependent protein kinase (Marchantia polymorpha) gi:5162877:dbj:BAA81748; contains protein kinase domain, Pfam:PF00069; contains EF hand domain (calcium-b... ; (*SWP) sp|P49101|CDPK2_MAIZE (e_value=4e-59) Calcium-dependent protein kinase 2 OS=Zea mays GN=CDPK2; Solyc08g008170.2.1 genomic_reference:SL2.40ch08 gene_region:2637882-2642478 transcript_region:SL2.40ch08:2637882..2642478- go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase 3 (AHRD V1 **** B9GKB5_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 3 1 3 18 opLeV0100001206 sgn|U226221 TCGGGAAACTTGGGCCTTTGTGTGCACTGTGATCCAGAAGAAGGCTCAAATTGCCCTGAGAATATCACGT Experimental SGN-U577102 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|12331620|gb|AAG52994.1| (e_value=3e-160) receptor-like protein kinase INRPK1c [Ipomoea nil]; (*ATH) AT1G73080.1 (e_value=3e-107) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, similar to receptor protein kinase GI:1389566 from (Arabidopsis thaliana) | chr1:27488174-27491862 FORWARD | Aliases: F3N23.28, F3N23_28; (*SWP) sp|P93194|RPK1_IPONI (e_value=2e-161) Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1; Solyc03g123860.2.1 genomic_reference:SL2.40ch03 gene_region:64604414-64608013 transcript_region:SL2.40ch03:64604414..64608013+ go_terms:GO:0001653 functional_description:"Receptor like kinase, RLK" 3 5 7 18 opLeV0100001207 sgn|U214431 CATGCCATATCATCACTAGCCCTTCAAGAGCTGTGTATTGGTGCGCATTAATGCAGTGCCACCAATTTGC Experimental SGN-U586986 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|52851180|emb|CAH58638.1| (e_value=3e-27) putative xanthine/uracil permease [Plantago major]; (*ATH) AT5G62890.1 (e_value=1e-26) Symbol: None | similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:At1g10540.1); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:At1g60030.1); similar to xanthine/uracil permease family pro... ; (*SWP) sp|Q27GI3|NAT6_ARATH (e_value=1e-25) Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6; Solyc03g114030.2.1 genomic_reference:SL2.40ch03 gene_region:58123040-58129815 transcript_region:SL2.40ch03:58123040..58129815- go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9I369_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease " 3 1 7 18 opLeV0100001208 sgn|U222569 GCTTTGCTCCACGTGCAAGATTGTTCGTCCTCTTCGTGCAAAGCATTGTTCAACCTGCGATCGTTGTGTG Experimental SGN-U583683 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|79517230|ref|NP_197535.2| (e_value=0) TIP1; (*ATH) AT5G20350.1 (e_value=0) Symbol: None | similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:At2g14250.1); similar to putative ankyrin repeat-containing protein [Oryza sativa (japonica cultivar-group)] (GB:XP_464354.1); contains InterPro domain Zn-finger, D... ; (*SWP) sp|Q52T38|TIP1_ARATH (e_value=0) Palmitoyltransferase TIP1 OS=Arabidopsis thaliana GN=TIP1; Solyc07g007430.2.1 genomic_reference:SL2.40ch07 gene_region:2145221-2153266 transcript_region:SL2.40ch07:2145221..2153266- go_terms:GO:0016417,GO:0000035 functional_description:"Palmitoyltransferase akr1 (EC 2.3.1.-)(Ankyrin repeat-containing protein akr1) (AHRD V1 *--- C8V079_EMENI); contains Interpro domain(s) IPR002110 Ankyrin " 2 6 17 19 opLeV0100001209 sgn|U237039 TTGTACAATGGGATAGCTCTTGACCTTCTTGACAAATGCCTCTTTTACAATCTCATAGGCTGGTTCAGCA Experimental SGN-U593045 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|56542455|gb|AAV92892.1| (e_value=2e-88) Avr9/Cf-9 rapidly elicited protein 36 [Nicotiana tabacum]; (*ATH) AT3G59080.1 (e_value=3e-80) Symbol: None | aspartyl protease family protein, contains similarity to CND41, chloroplast nucleoid DNA binding protein (GI:2541876) (Nicotiana tabacum); contains Pfam profile PF00026: Eukaryotic aspartyl protease | chr3:21847556-21849597 FORWARD | ... ; (*SWP) sp|Q766C2|NEP2_NEPGR (e_value=7e-24) Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2; Solyc07g045100.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:55541314-55542963 transcript_region:SL2.40ch07:55541314..55542963+ go_terms:GO:0003677 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 " 2 2 17 19 opLeV0100001210 sgn|U240159 TTCCCCCCCCAACCTTTAATTTTCTAATTTGGGGCTAGGCTTCAATTTTGCCCTGCCCCCAAAAATCGGG Experimental SGN-U600539 Tomato 200607#2 [1 ESTs aligned] \N \N 2 6 1 18 opLeV0100001211 sgn|U233940 GCAGTCTAACTGATGTTTCGACCAGTAGCAATGCCACTTTTCGCTGCTGT Experimental SGN-U566711 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157339276|emb|CAO43817.1| (e_value=4e-41) unnamed; (*ATH) AT5G11910.1 (e_value=7e-38) | Symbol: None | esterase/lipase/thioesterase family protein, low similarity to cinnamoyl ester hydrolase CinI (Butyrivibrio fibrisolvens) GI:1622732; contains Interpro entry IPR000379 | chr5:3836338-3838214 REVERSE | Aliases: F14F18.80, F14F18_80; \N \N 2 2 1 18 opLeV0100001212 sgn|U212601 CGATTTCCATTCTTTTCAACCCAAGTGATAGACCCAGTTTGACCTGAGTTGAAGTCGCCTCTATAGCGAA Experimental SGN-U581404 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|3687303|emb|CAA06998.1| (e_value=0) subtilisin-like protease [Lycopersicon esculentum]; (*ATH) AT5G67090.1 (e_value=6e-138) | Symbol: None | subtilase family protein, contains similarity to subtilisin-like protease ag12 GI:757522 from (Alnus glutinosa) | chr5:26791337-26793547 REVERSE | Aliases: K21H1.5, K21H1_5; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-128) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12; Solyc01g087780.2.1 genomic_reference:SL2.40ch01 gene_region:74444501-74447330 transcript_region:SL2.40ch01:74444501..74447330+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82006_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related IPR000209 Peptidase S8 and S53, subtilisin, kexin, sedolisin " 2 2 5 18 opLeV0100001213 sgn|U213022 GGCCAGAACTTATTGGTGTACCAGCACAATATGCTAAGGGAATAATTCAGAAGGAAAATCCATTCGTAAC Experimental SGN-U593094 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|124120|sp|P16231|ICI1_SOLPE (e_value=4e-23) RecName:; (*SWP) sp|P16231|ICI1_SOLPE (e_value=4e-24) Wound-induced proteinase inhibitor 1 OS=Solanum peruvianum; Solyc09g084440.2.1 genomic_reference:SL2.40ch09 gene_region:64510237-64511499 transcript_region:SL2.40ch09:64510237..64511499+ go_terms:GO:0009611 functional_description:"Proteinase inhibitor I (AHRD V1 ***- Q3S484_SOLTU); contains Interpro domain(s) IPR000864 Proteinase inhibitor I13, potato inhibitor I " 4 6 17 19 opLeV0100001214 sgn|U224063 AGAGGGCAAAGTTATATGGATGGCATGATACATATTCATTCACAAAGGCCATGGGTGAGATGGTGATTGA Experimental SGN-U579573 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|15229920|ref|NP_187805.1| (e_value=1e-112) male sterility protein 2 (MS2) [Arabidopsis thaliana]; (*ATH) AT3G11980.1 (e_value=9e-115) | Symbol: None | male sterility protein 2 (MS2), identical to male sterility protein 2 (MS2) SP:Q08891 (Arabidopsis thaliana) | chr3:3814242-3817123 FORWARD | Aliases: MEC18.1; (*SWP) sp|Q08891|MS2_ARATH (e_value=8e-114) Male sterility protein 2 OS=Arabidopsis thaliana GN=MS2; Solyc09g005940.2.1 genomic_reference:SL2.40ch09 gene_region:650910-654902 transcript_region:SL2.40ch09:650910..654902+ go_terms:GO:0016628,GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **-* Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding " 4 2 17 19 opLeV0100001215 sgn|U240199 TATCCAGGTGGTGAAAAACCGCGGACATGCCTGCAATGAGCAGAGATCTCACTCACGGGCCTAAACCTCA Experimental SGN-U586092 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157341307|emb|CAO49214.1| (e_value=1e-33) unnamed; (*ATH) AT5G15790.2 (e_value=6e-31) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr5:5148765-5151412 FORWARD | Aliases: None; (*SWP) sp|Q8LE94|RING3_ARATH (e_value=2e-28) E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290/At3g02291; \N \N 4 6 1 18 opLeV0100001216 sgn|U215227 CTTCTTATATTTCCCCTGTTTATCGAATTGATACTTCTCCGTCCTGCTAATATCTTCCATCGCCGCTTCC Experimental SGN-U584702 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|21615419|emb|CAD33929.1| (e_value=6e-47) microtubule associated protein [Cicer arietinum]; (*ATH) AT4G16520.2 (e_value=1e-48) | Symbol: None | autophagy 8f (APG8f), identical to autophagy 8f (Arabidopsis thaliana) GI:19912161; contains Pfam profile PF02991: Microtubule associated protein 1A/1B, light chain 3 | chr4:9306708-9308465 REVERSE | Aliases: None; (*SWP) sp|Q8VYK7|ATG8F_ARATH (e_value=1e-47) Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F; Solyc08g078820.2.1 genomic_reference:SL2.40ch08 gene_region:59697047-59702300 transcript_region:SL2.40ch08:59697047..59702300+ go_terms:GO:0008017 functional_description:"Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) " 4 2 1 18 opLeV0100001217 sgn|U215564 AGGATAGAGGAGACACATTGGGTTAGTCTACACATGTGTCTTTCATAGCCTGTTACGTATATATACCATA Experimental SGN-U563748 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|157343450|emb|CAO67956.1| (e_value=5e-177) unnamed; (*ATH) AT5G08160.1 (e_value=5e-168) | Symbol: None | serine/threonine protein kinase, putative, identical to serine/threonine protein kinase (Arabidopsis thaliana) gi:2109293:gb:AAB69123 | chr5:2625560-2628111 REVERSE | Aliases: None; (*SWP) sp|O75716|STK16_HUMAN (e_value=3e-45) Serine/threonine-protein kinase 16 OS=Homo sapiens GN=STK16; Solyc06g069330.2.1 genomic_reference:SL2.40ch06 gene_region:39468885-39473184 transcript_region:SL2.40ch06:39468885..39473184+ go_terms:GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q8L9Q3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 4 6 5 18 opLeV0100001218 sgn|U218358 CACAACAGTGCCGGTAGGGCCCATAACCACTCTGATAGTGCTTTTTGCAAGCATCTGCTCTTTGGCAGCC Experimental SGN-U574331 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|157350188|emb|CAO40126.1| (e_value=9e-115) unnamed; (*ATH) AT1G56460.1 (e_value=8e-66) | Symbol: None | PAPA-1-like family protein / zinc finger (HIT type) family protein, contains Pfam profile PF04795: PAPA-1-like conserved region | chr1:21149999-21153281 FORWARD | Aliases: F13N6.4, F13N6_4; Solyc01g079350.2.1 genomic_reference:SL2.40ch01 gene_region:70955389-70958207 transcript_region:SL2.40ch01:70955389..70958207+ go_terms:GO:0005515 functional_description:"PAPA-1-like conserved region family protein expressed (AHRD V1 *-*- Q2QNL7_ORYSJ); contains Interpro domain(s) IPR006880 PAPA-1-like conserved region " 4 2 5 18 opLeV0100001219 sgn|U219817 GCATGCTGTTATCCGGTTCATCTAATTCATCAGACCCAAACCCACAAGTAACTGCCACCACCACCACTAC Experimental SGN-U571280 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157356367|emb|CAO62519.1| (e_value=9e-61) unnamed; (*ATH) AT5G15130.1 (e_value=3e-51) | Symbol: None | WRKY family transcription factor, contains Pfam profile: PF03106#WRKY DNA -binding domain; TMV response-related gene product, Nicotiana tabacum, EMBL:AB024510 | chr5:4904429-4906882 FORWARD | Aliases: F8M21.20, F8M21_20; (*SWP) sp|Q9LXG8|WRK72_ARATH (e_value=3e-50) Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72; Solyc06g070990.2.1 genomic_reference:SL2.40ch06 gene_region:39985716-39990128 transcript_region:SL2.40ch06:39985716..39990128- go_terms:GO:0045449 functional_description:"WRKY transcription factor 73 (AHRD V1 *-*- Q6IEK8_ORYSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY " 2 6 19 19 opLeV0100001220 sgn|U234337 TTTCCAAAAGACACAACTTTCTGGATAAAATGGGTCTGAACAAATTTCACTGAACGGACATGTTCCTTGC Experimental SGN-U569882 Tomato 200607#2 [2 ESTs aligned] \N \N 2 2 19 19 opLeV0100001221 sgn|U225708 CTTCTCCTCCTCTCTACCACCACCCTCCACCCTTCTTCGATATCGATAGCAATTTCTACTAAAGCAATTA Experimental SGN-U581858 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157335920|emb|CAO61750.1| (e_value=5e-29) unnamed; (*ATH) AT1G78020.1 (e_value=1e-22) | Symbol: None | senescence-associated protein-related, similar to senescence-associated protein SAG102 (GI:22331931) (Arabidopsis thaliana) | chr1:29343587-29344649 FORWARD | Aliases: F28K19.24, F28K19_24; \N \N 2 6 3 18 opLeV0100001222 sgn|U218839 GCTGTGGCCTTAAAATCCAGCCCTTTATCGTCCACCTTAGCGTGCGATGTACCTATGTATCTAACTTTGC Experimental SGN-U580669 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|147844523|emb|CAN82081.1| (e_value=1e-78) hypothetical; (*ATH) AT1G75440.1 (e_value=8e-77) | Symbol: None | ubiquitin-conjugating enzyme 16 (UBC16), E2; identical to gi:2801444, GB:AAC39325 from (Arabidopsis thaliana) (Plant Mol. Biol. 23 (2), 387-396 (1993)) | chr1:28317189-28318802 FORWARD | Aliases: F1B16.3, F1B16_3; (*SWP) sp|Q9FWT2|UBC16_ARATH (e_value=8e-76) Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16; Solyc04g080810.2.1 genomic_reference:SL2.40ch04 gene_region:62479013-62483424 transcript_region:SL2.40ch04:62479013..62483424- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 W (AHRD V1 **** B6SI81_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 " 2 2 3 18 opLeV0100001223 sgn|U221070 GTCGAGTACCTAAATTTCATAAGTTTGTTTGCGGTTTCTGGGTAAGTTGTGCGTACGCTCTACCCTTCCC Experimental SGN-U572787 Tomato 200607#2 [8 ESTs aligned] \N \N 2 6 7 18 opLeV0100001224 sgn|U224383 GTTGGGCAGTCCGGGAATGAGGGCAGGGATGGTTGGTATCCCTGATCCAGCACTCAACTCTAATTTCATT Experimental SGN-U565963 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|42561991|gb|AAS20434.1| (e_value=0) AREB-like protein [Lycopersicon esculentum]; (*ATH) AT1G45249.1 (e_value=2e-95) Symbol: None | similar to ABA-responsive element-binding protein 2 (AREB2) [Arabidopsis thaliana] (TAIR:At3g19290.1); similar to putative ripening-related bZIP protein [Vitis vinifera] (GB:CAB85632.1); contains InterPro domain Basic-leucine zipper (... ; Solyc04g078840.2.1 genomic_reference:SL2.40ch04 gene_region:61094101-61097408 transcript_region:SL2.40ch04:61094101..61097408- go_terms:GO:0003700,GO:0010843 functional_description:"BZIP transcription factor (AHRD V1 **-* Q0PN11_9FABA); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 " 4 6 19 19 opLeV0100001225 sgn|U215910 GTATATAGGGGGTGGGTGTGGAGTGGATGAAGTGTGAACAAAATGGAAGCAGTTGAAGATGGAAATGGGG Experimental SGN-U567196 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157357229|emb|CAO63731.1| (e_value=3e-55) unnamed; (*ATH) AT4G19185.1 (e_value=2e-55) | Symbol: None | integral membrane family protein, contains Pfam profile:PF00892 integral membrane protein DUF6 | chr4:10489096-10491668 REVERSE | Aliases: None; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=3e-16) Auxin-induced protein 5NG4 OS=Pinus taeda; Solyc08g075460.2.1 genomic_reference:SL2.40ch08 gene_region:56777331-56783563 transcript_region:SL2.40ch08:56777331..56783563+ go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9FHJ9_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane " 4 2 19 19 opLeV0100001226 sgn|U229012 CCTGGCCTGTAATCTACCAACCCATCTGGGAACTTTGTCCATCTCTTGTACGTCAGGTTCATGTTTACGA Experimental SGN-U571669 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157348638|emb|CAO23530.1| (e_value=8e-59) unnamed; (*ATH) AT3G57790.1 (e_value=8e-59) Symbol: None | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein, weak similarity to SP:P15922 Exo-poly-alpha-D-galacturonosidase precursor (EC 3.2.1.82) (Exo-PG) {Erwinia chrysanthemi}; contains PF00295: Glycosyl ... ; Solyc03g051770.2.1 genomic_reference:SL2.40ch03 gene_region:18737534-18747386 transcript_region:SL2.40ch03:18737534..18747386+ functional_description:"Polygalacturonase-like protein Glycoside hydrolase family 28 (AHRD V1 **-- A5FF89_FLAJ1); contains Interpro domain(s) IPR012334 Pectin lyase fold " 4 6 3 18 opLeV0100001227 sgn|U233196 TAGATCCTTTTTAGATTCTGAAGTGTGCTCAAGGCACGCGACACTCGGCAATGTTCCAGATCTCTTTTGC Experimental SGN-U595730 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|417488|sp|P32811|PHSH_SOLTU (e_value=3e-37) ALPHA-GLUCAN PHOSPHORYLASE, H ISOZYME (STARCH PHOSPHORYLASE H); (*ATH) AT3G46970.1 (e_value=8e-36) | Symbol: PHS2 | Encodes a cytosolic alpha-glucan phosphorylase. | chr3:17312379-17317431 REVERSE | Aliases: F13I12.20, ATPHS2, PHS2; (*SWP) sp|P32811|PHSH_SOLTU (e_value=1e-38) Alpha-glucan phosphorylase, H isozyme OS=Solanum tuberosum; Solyc09g031970.2.1 genomic_reference:SL2.40ch09 gene_region:25052011-25067170 transcript_region:SL2.40ch09:25052011..25067170+ go_terms:GO:0008184 functional_description:"Phosphorylase (AHRD V1 **** B9HP81_POPTR); contains Interpro domain(s) IPR011833 Glycogen/starch/alpha-glucan phosphorylase " 4 2 3 18 opLeV0100001228 sgn|U228093 GGTGAGATTGCGTACAATATATAGACTCAATGTGATTTGACCCTTCTTAAGATTCCACGCATAACAGTAG Experimental SGN-U564592 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157338096|emb|CAO39140.1| (e_value=1e-84) unnamed; (*ATH) AT4G23180.1 (e_value=3e-78) Symbol: None | receptor-like protein kinase 4, putative (RLK4), nearly identical to receptor-like protein kinase 4 (Arabidopsis thaliana) GI:13506745; contains Pfam domain, PF00069: Protein kinase domain; identical to cDNA receptor-like protein kina... ; (*SWP) sp|Q8GYA4|CRK10_ARATH (e_value=3e-77) Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10; Solyc10g006720.2.1 genomic_reference:SL2.40ch10 gene_region:1184213-1188819 transcript_region:SL2.40ch10:1184213..1188819+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 4 6 7 18 opLeV0100001229 sgn|U213321 CAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTA Experimental SGN-U590117 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147795191|emb|CAN69459.1| (e_value=6e-40) hypothetical; (*ATH) AT1G42970.1 (e_value=6e-42) Symbol: None | glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B, identical to SP:P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (N... ; (*SWP) sp|P25857|G3PB_ARATH (e_value=5e-41) Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB; Solyc12g094640.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63152981-63156043 transcript_region:SL2.40ch12:63152981..63156043+ go_terms:GO:0008152,GO:0055114 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase B (AHRD V1 ***- B4F8L7_MAIZE); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase " 4 2 7 18 opLeV0100001230 sgn|U220772 TAAAACTTGTGAGGGGGAATACACTTAAACATTTTGGATGGACTCGAGCTTTTCCTAGCATCTCCATGAC Experimental SGN-U568032 Tomato 200607#2 [10 ESTs aligned] Solyc08g041780.2.1 genomic_reference:SL2.40ch08 gene_region:27112190-27127890 transcript_region:SL2.40ch08:27112190..27127890- functional_description:"Neurochondrin family protein (AHRD V1 ***- D7MAS5_ARALY); contains Interpro domain(s) IPR008709 Neurochondrin " 2 1 17 19 opLeV0100001231 sgn|U239977 CATCCCTTTATTAGGACTGTCATCGTTGTATAAACCTCCTGGCAATGTGAAACCAGCAGCGAACGTGACT Experimental SGN-U601924 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157353868|emb|CAO46403.1| (e_value=4e-24) unnamed; (*ATH) AT4G03500.1 (e_value=2e-13) | Symbol: None | ankyrin repeat family protein, contains ankyrin repeats, Pfam:PF00023 | chr4:1553090-1556569 FORWARD | Aliases: F9H3.13, F9H3_13; Solyc07g061740.2.1 genomic_reference:SL2.40ch07 gene_region:61921993-61925034 transcript_region:SL2.40ch07:61921993..61925034+ go_terms:GO:0005515 functional_description:"Ankyrin repeat family protein-like (AHRD V1 **-- Q6ERI3_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin " 2 5 1 18 opLeV0100001232 sgn|U241564 AAAGTTGTTTGTAGTCTCGGGGATTCCTGCCCCTTCCTTTCCAATCATTGAGGGGGGGAAAAGGACCTCA Experimental SGN-U598921 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|7960245|gb|AAF71264.1|AF246714_1 (e_value=3e-34) actin-like; (*ATH) AT3G12110.1 (e_value=7e-36) | Symbol: None | actin 11 (ACT11), identical to SP:P53496 Actin 11 {Arabidopsis thaliana} | chr3:3857860-3859804 FORWARD | Aliases: T21B14.7; (*SWP) sp|P53496|ACT11_ARATH (e_value=6e-35) Actin-11 OS=Arabidopsis thaliana GN=ACT11; \N \N 2 1 1 18 opLeV0100001233 sgn|U212877 TGGATCTTTACTTTGTACTGGGGAGCCTCAAAGTATTTCCACAGCATAAGGAAGTTGGTTATTTCTATTC Experimental SGN-U578841 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|3913935|sp|Q43502|IP23_SOLLC (e_value=2e-106) RecName:; (*SWP) sp|Q43502|IP23_SOLLC (e_value=2e-107) Proteinase inhibitor type-2 CEVI57 OS=Solanum lycopersicum GN=CEVI57; Solyc03g020050.2.1 genomic_reference:SL2.40ch03 gene_region:6917987-6918924 transcript_region:SL2.40ch03:6917987..6918924- go_terms:GO:0004867 functional_description:"Proteinase inhibitor II (AHRD V1 ***- B3F0C1_TOBAC); contains Interpro domain(s) IPR003465 Proteinase inhibitor I20, Pin2 " 2 5 5 18 opLeV0100001234 sgn|U219444 GCACGGGTGGAGCACGTTGACCATGCTCGTAAATCTGCACAGCATTGTATTAAATCATTGCTAACTGCAC Experimental SGN-U583672 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|195542238|gb|AAZ66138.2| (e_value=0) monodehydroascorbate; (*ATH) AT1G63940.2 (e_value=0) | Symbol: None | monodehydroascorbate reductase, putative, similar to monodehydroascorbate reductase GB:AAD28178 (Brassica juncea) | chr1:23733697-23737555 FORWARD | Aliases: None; (*SWP) sp|P92947|MDARP_ARATH (e_value=0) Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940; Solyc08g081530.2.1 genomic_reference:SL2.40ch08 gene_region:61722769-61729291 transcript_region:SL2.40ch08:61722769..61729291+ go_terms:GO:0005524 functional_description:"Reductase (AHRD V1 ***- B5HVX9_9ACTO); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase " 2 1 5 18 opLeV0100001235 sgn|U212867 ACCTATCCTTGTTCAACTGTAGTGTCAGCAGATTCACTACACACACTAATTTAACAATCCGCAAGCTTGA Experimental SGN-U581565 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|1346774|sp|Q08303|PPOA_SOLLC (e_value=0) RecName:; (*SWP) sp|Q08303|PPOA_SOLLC (e_value=0) Polyphenol oxidase A, chloroplastic OS=Solanum lycopersicum; Solyc08g074680.2.1 genomic_reference:SL2.40ch08 gene_region:55995940-56008590 transcript_region:SL2.40ch08:55995940..56008590- go_terms:GO:0008152 functional_description:"Polyphenol oxidase (AHRD V1 *-*- Q41428_SOLTU); contains Interpro domain(s) IPR002227 Tyrosinase " 4 5 17 19 opLeV0100001236 sgn|U213648 TTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAG Experimental SGN-U577913 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|82623413|gb|ABB87121.1| (e_value=3e-16) ribosomal; (*ATH) AT3G61110.1 (e_value=1e-17) | Symbol: None | 40S ribosomal protein S27 (ARS27A), identical to cDNA ribosomal protein S27 (ARS27A) GI:4193381 | chr3:22622621-22623785 FORWARD | Aliases: T27I15.200; (*SWP) sp|Q9M2F1|RS272_ARATH (e_value=1e-16) 40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B; \N \N 4 1 17 19 opLeV0100001237 sgn|U218727 GTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCAT Experimental SGN-U584667 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|157346067|emb|CAO15764.1| (e_value=1e-180) unnamed; (*ATH) AT2G38000.1 (e_value=3e-162) | Symbol: None | chaperone protein dnaJ-related, weak similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5) (Methylovorus sp.) | chr2:15910038-15912449 REVERSE | Aliases: T8P21.9, T8P21_9; (*SWP) sp|Q9Y2M2|CC032_HUMAN (e_value=6e-27) Uncharacterized protein C3orf32 OS=Homo sapiens GN=C3orf32; Solyc09g011880.2.1 genomic_reference:SL2.40ch09 gene_region:5155740-5160598 transcript_region:SL2.40ch09:5155740..5160598- functional_description:"LOC556397 protein (Fragment) (AHRD V1 **-- Q05AJ0_DANRE)" 4 5 1 18 opLeV0100001238 sgn|U233762 CCAATTCCTAGCTGGGTCCAGTTAGAGGGTCTGACCGTCTAAGTAATTGACCCGGCCCATGCCCCTTAAG Experimental SGN-U591605 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115439685|ref|NP_001044122.1| (e_value=3e-48) Os01g0727400; (*ATH) AT1G17350.1 (e_value=8e-50) | Symbol: None | auxin-induced-related / indole-3-acetic acid induced-related, similar to auxin-induced protein TGSAUR22 (GI:10185820) (Tulipa gesnerian) | chr1:5942374-5944456 FORWARD | Aliases: F28G4.20, F28G4_20; (*SWP) sp|Q9LQI7|CIA30_ARATH (e_value=7e-49) Probable complex I intermediate-associated protein 30 OS=Arabidopsis thaliana GN=At1g17350; \N \N 4 1 1 18 opLeV0100001239 sgn|U226216 GAAAGGATGACGAATTGTTCGCCAGGTTTCTTAGGTAGTTCCCGAAGTGCCCGTTTCACACAACCGGCGG Experimental SGN-U570282 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157327607|emb|CAO15604.1| (e_value=3e-41) unnamed; (*ATH) AT5G36950.1 (e_value=4e-37) | Symbol: None | DegP protease, putative, contains similarity to DegP2 protease GI:13172275 from (Arabidopsis thaliana) | chr5:14612211-14615570 FORWARD | Aliases: MLF18.70, MLF18_70; (*SWP) sp|Q9FIV6|DGP10_ARATH (e_value=3e-36) Protease Do-like 10, mitochondrial OS=Arabidopsis thaliana GN=DEGP10; Solyc11g008850.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3033380-3040040 transcript_region:SL2.40ch11:3033380..3040040+ go_terms:GO:0008236 functional_description:"Serine protease (AHRD V1 **** D8UJN6_VOLCA); contains Interpro domain(s) IPR015724 Serine endopeptidase DegP2 " 4 5 5 18 opLeV0100001240 sgn|U223216 CCAGCGTTGCTCGTTGGGACGACGTTGAAGTTCGTTCCTTGAAAGGTGTAGAAGCACAGAACGGAAATTG Experimental SGN-U583217 Tomato 200607#2 [36 ESTs aligned] (*GB) gi|147832340|emb|CAN75517.1| (e_value=0) hypothetical; (*ATH) AT5G57990.1 (e_value=1e-158) | Symbol: None | ubiquitin-specific protease 23, putative (UBP23), identical to GI:11993486 | chr5:23487240-23491330 REVERSE | Aliases: MTI20.25, MTI20_25; (*SWP) sp|Q9FPS4|UBP23_ARATH (e_value=1e-157) Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23; Solyc07g005530.2.1 genomic_reference:SL2.40ch07 gene_region:421123-429027 transcript_region:SL2.40ch07:421123..429027+ go_terms:GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 ***- D7MNY5_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 " 4 1 5 18 opLeV0100001241 sgn|U223051 CGAGAGACTACTTCCGCGATGAGATGCTTTGTTGACCTGCTGAAGACACTGTTCCATTACTTACAGAATG Experimental SGN-U567869 Tomato 200607#2 [29 ESTs aligned] (*GB) gi|157327908|emb|CAO16622.1| (e_value=0) unnamed; (*ATH) AT2G40930.1 (e_value=0) | Symbol: None | ubiquitin-specific protease 5, putative (UBP5), similar to GI:6648604 | chr2:17083406-17089511 REVERSE | Aliases: T20B5.13, T20B5_13; (*SWP) sp|O22207|UBP5_ARATH (e_value=0) Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5; Solyc09g019970.2.1 genomic_reference:SL2.40ch09 gene_region:17868711-17884051 transcript_region:SL2.40ch09:17868711..17884051+ go_terms:GO:0004843,GO:0004197 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9HDU9_POPTR); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 " 2 5 19 19 opLeV0100001242 sgn|U217222 GACTCTAGTGCATAGCTGTGACCACCATTAGGAAGAATAGTTCCCCTTGGAAATCAGTTAAGAAACAAAA Experimental SGN-U593274 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|60652321|gb|AAX33233.1| (e_value=2e-14) plastid alpha-amylase [Actinidia chinensis]; (*ATH) AT1G69830.1 (e_value=9e-16) Symbol: AMY3 | Encodes a plastid-localized α-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms. | chr1:26291944-262... ; (*SWP) sp|Q0D9J1|AMY2A_ORYSJ (e_value=2e-11) Alpha-amylase isozyme 2A OS=Oryza sativa subsp. japonica GN=AMY2A; \N \N 2 5 3 18 opLeV0100001243 sgn|U212849 GTCTTTTTACGTATCTCCACTTAAATACCAGACATCACTAACTTAAGTCACAAACCCCTTGACCTTCCCA Experimental SGN-U577829 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|125586764|gb|EAZ27428.1| (e_value=5e-16) hypothetical; (*ATH) AT2G37130.1 (e_value=5e-15) | Symbol: None | peroxidase 21 (PER21) (P21) (PRXR5), identical to SP:Q42580 Peroxidase 21 precursor (EC 1.11.1.7) (Atperox P21) (PRXR5) (ATP2a/ATP2b) {Arabidopsis thaliana} | chr2:15605000-15607137 REVERSE | Aliases: T2N18.11, T2N18_11; (*SWP) sp|Q42580|PER21_ARATH (e_value=4e-14) Peroxidase 21 OS=Arabidopsis thaliana GN=PER21; \N \N 2 1 3 18 opLeV0100001244 sgn|U225784 GAGTGAGATGGTGGAGTGCCTCCGAGTTGGGTACTTGTGTACGGCGGAGGCCCCAAATAAACGGCCTAGA Experimental SGN-U570821 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157354722|emb|CAO48040.1| (e_value=2e-16) unnamed; (*ATH) AT5G45800.1 (e_value=3e-14) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative | chr5:18592809-18596324 REVERSE | Aliases: MRA19.24, MRA19_24; Solyc02g072520.2.1 genomic_reference:SL2.40ch02 gene_region:36281095-36284514 transcript_region:SL2.40ch02:36281095..36284514- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK" 2 5 7 18 opLeV0100001245 sgn|U235677 TGTGGGTGATGGGGTGGTTGAGCCTTCCATTGAGGAACTTTATGAGAATGTGTGTGAGATGCAGAGCTCT Experimental SGN-U564177 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157342226|emb|CAO64339.1| (e_value=1e-16) unnamed; (*ATH) AT1G27500.1 (e_value=6e-11) | Symbol: None | kinesin light chain-related, low similarity to kinesin light chain (Plectonema boryanum) GI:2645229; contains Pfam profile PF00515 TPR Domain | chr1:9551438-9554126 REVERSE | Aliases: F17L21.29, F17L21_29; Solyc03g114320.2.1 genomic_reference:SL2.40ch03 gene_region:58383943-58387290 transcript_region:SL2.40ch03:58383943..58387290+ go_terms:GO:0005488 functional_description:"Kinesin light chain (AHRD V1 ***- B6SPN7_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical " 2 1 7 18 opLeV0100001246 AJ225047 GATTTGAAGTTGCTCTGTTTTTCTATCGAAGTCTTGAGTCGGCTTTGCTTCTCGCCTAATGGCGTAGTTG Experimental SGN-U578134 Tomato 200607#2 [44 ESTs aligned] (*GB) gi|4836473|gb|AAD30454.1|AF123257_1 (e_value=8e-65) 17.6; (*ATH) AT1G07400.1 (e_value=5e-48) Symbol: None | 17.8 kDa class I heat shock protein (HSP17.8-CI), similar to 17.5 kDa class I heat shock protein SP:P04793 from (Glycine max); contains Pfam PF00011: Hsp20/alpha crystallin family | chr1:2274940-2275755 FORWARD | Aliases: F22G5.25, F2... ; (*SWP) sp|O82011|HSP11_SOLPE (e_value=2e-64) 17.7 kDa class I heat shock protein OS=Solanum peruvianum; \N \N 4 5 19 19 opLeV0100001247 sgn|U217798 ACGAGAGAGTGACCGGAGGTCGGTTGATGTTTAAAGGAGGCGCAGTAGCCAGCCGCAGCAAAGCAATCGA Experimental SGN-U579083 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|53749476|gb|AAU90329.1| (e_value=1e-44) hypothetical; (*ATH) AT2G25720.1 (e_value=4e-26) | Symbol: None | expressed protein | chr2:10962597-10963130 REVERSE | Aliases: F3N11.17, F3N11_17; Solyc03g098410.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:54175764-54176117 transcript_region:SL2.40ch03:54175764..54176117- functional_description:"Os04g0566000 protein (Fragment) (AHRD V1 *-*- Q0JAZ6_ORYSJ)" 4 1 19 19 opLeV0100001248 sgn|U213414 GATTCAAATGGTCTGTAGAACAGGGCAGTAGTTTAATTTTGAACAATTAGTCTCAAGACCCCCACTGAAA Experimental SGN-U580638 Tomato 200607#2 [85 ESTs aligned] (*GB) gi|51292007|gb|AAT99735.1| (e_value=1e-72) SKP1 [Nicotiana tabacum]; (*ATH) AT5G42190.1 (e_value=2e-61) Symbol: None | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 (At2) / UFO-binding protein (UIP2), E3 ubiquitin ligase; skp1b; identical to UIP2 GI:3719211 from (Arabidopsis thaliana); contains Pfam profiles PF01466: Skp1 family, dimerisation doma... ; (*SWP) sp|Q9FHW7|SKP1B_ARATH (e_value=2e-60) SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B; \N \N 4 5 3 18 opLeV0100001249 sgn|U215387 TACATGAATCAAGACTATGGTCTAACAATGTACGATCCCGGTTACAACGCTCATACGGGCTACGCCATGG Experimental SGN-U565780 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157347560|emb|CAO18197.1| (e_value=5e-52) unnamed; (*ATH) AT2G36950.1 (e_value=1e-35) | Symbol: None | heavy-metal-associated domain-containing protein, nearly identical to farnesylated protein ATFP2 (GI:4097545) Pfam profile PF00403: Heavy-metal-associated domain | chr2:15522212-15524010 FORWARD | Aliases: T1J8.13, T1J8_13; Solyc09g008200.2.1 genomic_reference:SL2.40ch09 gene_region:1652980-1655416 transcript_region:SL2.40ch09:1652980..1655416- go_terms:GO:0005507 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q10RN8_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein " 4 1 3 18 opLeV0100001250 sgn|U222716 GTGGGTTTTGGGCCAAATTATCCAAAAAGAGTACACCATAGAGGGGCCTCAATTGTGTCTTATAGAGAGA Experimental SGN-U578042 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|15225764|ref|NP_180858.1| (e_value=0) glycosyl hydrolase family 9 [Arabidopsis thaliana]; (*ATH) AT2G32990.1 (e_value=0) | Symbol: None | glycosyl hydrolase family 9 protein, similar to endo-beta-1,4-glucanase GI:4972236 from (Fragaria x ananassa) | chr2:14010327-14013094 FORWARD | Aliases: T21L14.7, T21L14_7; (*SWP) sp|O48766|GUN11_ARATH (e_value=0) Endoglucanase 11 OS=Arabidopsis thaliana GN=At2g32990; Solyc07g049300.2.1 genomic_reference:SL2.40ch07 gene_region:56872325-56876111 transcript_region:SL2.40ch07:56872325..56876111- go_terms:GO:0005975,GO:0003824 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0J0_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 " 4 5 7 18 opLeV0100001251 sgn|U213928 CTAATGGAACAGCCAAAGGCCCGGCTCCTCGCTATTCTGCTACAGCTTGAAGAGTAGTAGCTTAGTATAA Experimental SGN-U585096 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|157329089|emb|CAO24243.1| (e_value=1e-92) unnamed; (*ATH) AT3G25150.1 (e_value=7e-69) Symbol: None | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); similar to ras-GTPase-activating protein (GAP<1... ; (*SWP) sp|O94260|G3BP_SCHPO (e_value=3e-18) Putative G3BP-like protein OS=Schizosaccharomyces pombe GN=nxt3; Solyc06g083300.2.1 genomic_reference:SL2.40ch06 gene_region:45055025-45059449 transcript_region:SL2.40ch06:45055025..45059449+ go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Ras GTPase-activating protein-binding protein 2 (AHRD V1 *--- B5X4A8_SALSA); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote " 4 1 7 18 opLeV0100001252 sgn|U218557 TGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGT Experimental SGN-U574775 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|8886726|gb|AAF80560.1|AF192486_1 (e_value=8e-173) omega-6; (*ATH) AT3G12120.2 (e_value=3e-154) |; (*SWP) sp|P48631|FD6E2_SOYBN (e_value=1e-156) Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2; Solyc12g100250.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65373851-65374990 transcript_region:SL2.40ch12:65373851..65374990- go_terms:GO:0055114 functional_description:"Fatty acid desaturase (AHRD V1 ***- B3SP99_CAPAN); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 " 1 2 18 19 opLeV0100001253 sgn|U219665 CGTTCCATTATCAAGTGTACGAAGCAGTACCTGCTGCAGTTTCAACATAGCTTAGTCCCCTTCATAAACA Experimental SGN-U565956 Tomato 200607#2 [4 ESTs aligned] \N \N 1 6 2 18 opLeV0100001254 sgn|U231826 AGTTGCAGTCGGGCACGGCCTTTAGAAGTACCTCCGCCGCAATTCATCAATCCTCGATGAAAAGTGAAGA Experimental SGN-U595018 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157337869|emb|CAO38913.1| (e_value=3e-25) unnamed; (*ATH) AT3G20420.1 (e_value=3e-27) Symbol: RTL2 | ribonuclease III family protein, similar to CAF protein (RNA helicase/RNAseIII) (Arabidopsis thaliana) GI:6102610; contains Pfam profiles: PF00636 RNase3 domain, PF00035 Double-stranded RNA binding motif | chr3:7119288-7120925 REVERSE... ; (*SWP) sp|Q9SP32|DICER_ARATH (e_value=5e-17) Endoribonuclease Dicer homolog OS=Arabidopsis thaliana GN=CAF; \N \N 1 2 2 18 opLeV0100001255 sgn|U219439 GAAGGACCGTTTGGTTCCTATTATTGAAGCCTTATCCACAAGTTACCTGGGTCCCTGATATAACCAGCCG Experimental SGN-U583123 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157336905|emb|CAO71590.1| (e_value=7e-105) unnamed; (*ATH) AT1G67320.1 (e_value=3e-91) Symbol: None | DNA primase, large subunit family, contains Pfam profile PF04104: Eukaryotic-type DNA primase, large subunit; similar to DNA primase large subunit (EC 2.7.7.-) (DNA primase 58 kDa subunit) (p58) (Swiss-Prot:P49643) (Homo sapiens) | ch... ; (*SWP) sp|Q84WJ2|PRI2_ARATH (e_value=2e-90) Probable DNA primase large subunit OS=Arabidopsis thaliana GN=At1g67320; Solyc04g045530.2.1 genomic_reference:SL2.40ch04 gene_region:32864100-32873431 transcript_region:SL2.40ch04:32864100..32873431+ go_terms:GO:0003896 functional_description:"DNA primase large subunit (AHRD V1 **** B5X2T9_SALSA); contains Interpro domain(s) IPR016558 DNA primase, large subunit, eukaryotic " 1 6 6 18 opLeV0100001256 sgn|U217622 GGAATTGGTCGCCAGTGATCTACATGGCAATGAATGGCACTTTCGCCACATTTTTCGAGGTCAACCTAGG Experimental SGN-U571612 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|157354310|emb|CAO46911.1| (e_value=0) unnamed; (*ATH) AT1G59750.3 (e_value=0) Symbol: None | similar to transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related [Arabidopsis thaliana] (TAIR:At2g46530.1); similar to OSJNBa0064D20.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE04227.2); contains In... ; (*SWP) sp|Q8L7G0|ARFA_ARATH (e_value=0) Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1; Solyc01g103050.2.1 genomic_reference:SL2.40ch01 gene_region:83494825-83500792 transcript_region:SL2.40ch01:83494825..83500792+ go_terms:GO:0005515,GO:0003700 functional_description:"Auxin response factor 1 (AHRD V1 **** D9I2J0_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor " 1 2 6 18 opLeV0100001257 sgn|U218601 CTGTGCGGGTAGTTCCTATTAGGACTGTAGTTACTGCAGTTCCAGCTTCCATTGGGCGTTCAACTTCTGA Experimental SGN-U569333 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|147837044|emb|CAN77053.1| (e_value=9e-70) hypothetical; (*ATH) AT5G25270.1 (e_value=3e-34) | Symbol: None | expressed protein | chr5:8757786-8762005 REVERSE | Aliases: F21J6.3; Solyc06g036720.2.1 genomic_reference:SL2.40ch06 gene_region:23955142-23972017 transcript_region:SL2.40ch06:23955142..23972017+ functional_description:"HLA-B associated transcript 3 (Fragment) (AHRD V1 *--- Q5STC0_HUMAN); contains Interpro domain(s) IPR019956 Ubiquitin subgroup " 3 6 18 19 opLeV0100001258 sgn|U223470 ATCCTGATGATCTGGGAAGAGGTGGACATGAACTTAGTAAGACAACTGGAAACGCAGGTGCAAGAGTTGG Experimental SGN-U584417 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|211948050|gb|ACJ13748.1| (e_value=2e-71) hipI-SODC1s; (*ATH) AT5G18100.1 (e_value=5e-64) | Symbol: None | superoxide dismutase (Cu-Zn) / copper/zinc superoxide dismutase (CSD3), identical to copper/zinc superoxide dismutase GI:3273755 | chr5:5987200-5989201 FORWARD | Aliases: MRG7.6, MRG7_6; (*SWP) sp|O49044|SODC2_MESCR (e_value=3e-71) Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2; Solyc03g062890.2.1 genomic_reference:SL2.40ch03 gene_region:29784639-29789346 transcript_region:SL2.40ch03:29784639..29789346- go_terms:GO:0004784 functional_description:"Superoxide dismutase (AHRD V1 **** B6ZBR0_POPTN); contains Interpro domain(s) IPR001424 Superoxide dismutase, copper/zinc binding " 3 2 18 19 opLeV0100001259 sgn|U213565 TCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACT Experimental SGN-U578631 Tomato 200607#2 [6 ESTs aligned] \N \N 3 6 2 18 opLeV0100001260 sgn|U215767 GTAACATTAATTCACAACGCCGTGAAGGAAACTATCACTACTTGTGACAAGACTTCACCGGAGGACATAG Experimental SGN-U574782 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|197360039|gb|ACH69874.1| (e_value=2e-74) anthocyanin; (*ATH) AT3G26040.1 (e_value=4e-48) Symbol: None | transferase family protein, similar to deacetylvindoline 4-O-acetyltransferase (Catharanthus roseus)(GI:4091808)(PMID:9681034), alcohol acyltransferase (Fragaria x ananassa)(GI:10121328)(PMID:10810141) | chr3:9520978-9522307 FORWARD |... ; (*SWP) sp|Q94FT4|SALAT_PAPSO (e_value=1e-40) Salutaridinol 7-O-acetyltransferase OS=Papaver somniferum GN=SALAT; Solyc12g096770.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63889035-63890360 transcript_region:SL2.40ch12:63889035..63890360+ go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-- D6BK25_CYNSC); contains Interpro domain(s) IPR003480 Transferase " 3 2 2 18 opLeV0100001261 sgn|U214809 CGATACGCTCAACGTGTTGGTTCGGGTGCTCCAGTTTACTTGGCGGCCGTACTTGAATATTTGGCTGCTG Experimental SGN-U590769 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|62286683|sp|Q9M531|H2A_EUPES (e_value=9e-38) Histone; (*ATH) AT5G02560.1 (e_value=7e-37) Symbol: None | histone H2A, putative, similar to histone H2A from Pisum sativum SP:P25470, Zea mays SP:P40280, Petroselinum crispum SP:P19177; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 | chr5:575380-576604 FORWARD | Aliases: T22P11.15... ; (*SWP) sp|Q9M531|H2A_EUPES (e_value=5e-39) Histone H2A OS=Euphorbia esula; Solyc11g073250.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:53355429-53355963 transcript_region:SL2.40ch11:53355429..53355963- go_terms:GO:0003684 functional_description:"Histone H2A (AHRD V1 ***- C6TMV8_SOYBN); contains Interpro domain(s) IPR002119 Histone H2A " 3 6 6 18 opLeV0100001262 sgn|U222149 GTTCCCCTCGCTATCCTTTGCATCTAATTTTTTGTGGTGTATTTGGACGTTGGGGTACTACATGATTTAT Experimental SGN-U585021 Tomato 200607#2 [8 ESTs aligned] \N \N 3 2 6 18 opLeV0100001263 sgn|U219921 TTCCATGAGGATGGTAGTTCATATGCTGGAAGAAGCCGAGCCTTGCAAGCTGACAGATGTAGTCGTGAAT Experimental SGN-U577069 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|147774267|emb|CAN65551.1| (e_value=7e-92) hypothetical; (*ATH) AT1G09970.1 (e_value=4e-87) Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, Similar to A. thaliana receptor-like protein kinase (gb:RLK5_ARATH). ESTs gb:ATTS0475,gb:ATTS4362 come from this gene isoform contains a TG acceptor site at intron. | chr1:32... ; (*SWP) sp|Q9LJM4|IKU2_ARATH (e_value=4e-72) Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2; \N \N 1 6 20 19 opLeV0100001264 sgn|U229971 TGGGGGTAGAAATAAAAAAATGGATTCTCCCAAACAACGCGTATCATTGGGGTTCGCAAGAACCAGTGGG Experimental SGN-U572693 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147797454|emb|CAN69165.1| (e_value=7e-12) hypothetical; (*ATH) AT1G68550.1 (e_value=2e-12) Symbol: None | encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. | chr1:25729118-25731360 REVER... ; (*SWP) sp|Q9CA27|EF118_ARATH (e_value=2e-11) Ethylene-responsive transcription factor ERF118 OS=Arabidopsis thaliana GN=ERF118; Solyc04g009450.1.1 evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:2859789-2861588 transcript_region:SL2.40ch04:2859789..2861588- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding " 1 6 4 18 opLeV0100001265 sgn|U216342 CATGGGTGTTTCGGTGTGCGCCTCATGCTTGATCCGAAGTTTGTTGCTGA Experimental SGN-U584042 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157350728|emb|CAO40819.1| (e_value=3e-161) unnamed; (*ATH) AT3G63510.1 (e_value=2e-150) | Symbol: None | nitrogen regulation family protein, contains Pfam domain PF01207: Dihydrouridine synthase (Dus); similar to (SP:P45672) NIFR3-like protein (SP:P45672) (Azospirillum brasilense) | chr3:23461530-23463769 FORWARD | Aliases: MAA21.140; (*SWP) sp|Q8FB30|DUSA_ECOL6 (e_value=7e-58) tRNA-dihydrouridine synthase A OS=Escherichia coli O6 GN=dusA; Solyc01g087290.2.1 genomic_reference:SL2.40ch01 gene_region:73981707-73989145 transcript_region:SL2.40ch01:73981707..73989145- go_terms:GO:0008152,GO:0055114 functional_description:"TRNA-dihydrouridine synthase (AHRD V1 ***- A2VQL7_9BURK); contains Interpro domain(s) IPR001269 tRNA-dihydrouridine synthase " 1 2 4 18 opLeV0100001266 sgn|U236874 ACACGGAAGACCTTACGTTTGTTACCTAGGTAAGGTTTCGCCCACTCCACTAGATTGTGTTCTCCGGATG Experimental SGN-U568144 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|189163920|gb|ACD77110.1| (e_value=0) protein; (*ATH) AT2G28930.3 (e_value=9e-154) Symbol: None | similar to protein kinase (APK1a) [Arabidopsis thaliana] (TAIR:At1g07570.2); similar to protein kinase (APK1a) [Arabidopsis thaliana] (TAIR:At1g07570.1); similar to putative protein kinase [Oryza sativa] (GB:XP_493889.1); similar to p... ; (*SWP) sp|Q06548|APK1A_ARATH (e_value=2e-152) Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A; Solyc06g005500.2.1 genomic_reference:SL2.40ch06 gene_region:525975-529157 transcript_region:SL2.40ch06:525975..529157+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 1 6 8 18 opLeV0100001267 sgn|U220004 GGCTCCACAAGGGTTTTTGGCTGAATGTTACGTGCATAGGGCTTCAGCATATCGATCTTCTGGTCGAATT Experimental SGN-U584024 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157350159|emb|CAO40097.1| (e_value=7e-152) unnamed; (*ATH) AT2G47440.1 (e_value=6e-137) | Symbol: None | DNAJ heat shock N-terminal domain-containing protein, contains Pfam profiles PF00226: DnaJ domain, PF00515: TPR Domain; similar to GP:2104534:AF001308 (T10M13.11) | chr2:19476789-19478956 FORWARD | Aliases: T30B22.26; Solyc01g079580.2.1 genomic_reference:SL2.40ch01 gene_region:71185958-71188543 transcript_region:SL2.40ch01:71185958..71188543+ go_terms:GO:0005488,GO:0031072 functional_description:"DNAJ heat shock N-terminal domain-containing protein (AHRD V1 ***- D7LGN0_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical " 1 2 8 18 opLeV0100001268 sgn|U223247 GATCCCTGAAGAAACTTGACTGGGTGCTGCCCTGTGCCATGACTCTGTACTTTACGTGTTTATCTCAGAT Experimental SGN-U565379 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157359000|emb|CAO66902.1| (e_value=1e-86) unnamed; (*ATH) AT1G29370.1 (e_value=3e-65) | Symbol: None | kinase-related, similar to putative protein kinase (GI:11125348) (Homo sapiens); similar to Paired box protein Pax-8 (Swiss-Prot:P47240) (Canis familiaris) | chr1:10277876-10283184 REVERSE | Aliases: F15D2.28, F15D2_28; Solyc03g005750.2.1 genomic_reference:SL2.40ch03 gene_region:525181-537611 transcript_region:SL2.40ch03:525181..537611+ functional_description:"Genomic DNA chromosome 5 P1 clone MPL12 (AHRD V1 *--- Q9FL24_ARATH); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 " 3 6 20 19 opLeV0100001269 sgn|U241072 ACATAGACCCAGGATTGTGAAGCAATTAGCTTTGAAATGGTAAGCCAAGTGAAAGGAAAAATTGATGTGT Experimental SGN-U602314 Tomato 200607#2 [1 ESTs aligned] \N \N 3 2 20 19 opLeV0100001270 sgn|U218454 TGCATAGCAAGCGACAGCTTCAACGTACTTTCAAGTACTACTCACAACAATGGAGGATATGGGCTGCATG Experimental SGN-U584363 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|6969229|gb|AAF33669.1|AF079871_1 (e_value=4e-95) cyclic; (*ATH) AT4G01010.1 (e_value=5e-90) | Symbol: None | cyclic nucleotide-regulated ion channel, putative (CNGC13), similar to CaM-regulated potassium ion channel (ACBK1) GI:8515883 from (Arabidopsis thaliana) | chr4:434569-437242 REVERSE | Aliases: F3I3.1, F3I3_1; (*SWP) sp|Q9LD40|CNG13_ARATH (e_value=4e-89) Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13; Solyc05g050360.2.1 genomic_reference:SL2.40ch05 gene_region:59616314-59621717 transcript_region:SL2.40ch05:59616314..59621717+ go_terms:GO:0030551 functional_description:"Cyclic nucleotide gated channel (AHRD V1 **** A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding " 3 6 4 18 opLeV0100001271 sgn|U222169 GAGCTTAGGAAATCCCGTCAAGAGGCCACAGATTATCAGTATCGGTGTCAACAGCTGGAAAAGGAGCTGA Experimental SGN-U568532 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|187884338|gb|ACD37257.1| (e_value=0) tousled-like; (*ATH) AT5G20930.1 (e_value=0) | Symbol: None | protein kinase, putative, nearly identical to protein kinase tousled gi:433052:gb:AAA32874 | chr5:7097910-7103200 FORWARD | Aliases: F22D1.100, F22D1_100; (*SWP) sp|Q39238|TSL_ARATH (e_value=0) Serine/threonine-protein kinase TOUSLED OS=Arabidopsis thaliana GN=TOUSLED; Solyc11g071680.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52162376-52174213 transcript_region:SL2.40ch11:52162376..52174213- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- D0LX30_HALO1); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 3 2 4 18 opLeV0100001272 sgn|U225514 TCTCAGAGTTCACTGGCCTTCGAACCTCATCTGCCGTTCCATTCGGAGTGGGATGGAAAACTAACGTTGA Experimental SGN-U577274 Tomato 200607#2 [65 ESTs aligned] (*GB) gi|120661|sp|P09043|G3PA_TOBAC (e_value=8e-175) Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A); (*ATH) AT1G12900.1 (e_value=2e-167) Symbol: None | glyceraldehyde 3-phosphate dehydrogenase, chloroplast, putative / NADP-dependent glyceraldehydephosphate dehydrogenase, putative, similar to SP:P25856 Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (EC 1.2.1.13) (NA... ; (*SWP) sp|P09043|G3PA_TOBAC (e_value=5e-176) Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA; Solyc02g020940.2.1 genomic_reference:SL2.40ch02 gene_region:11082387-11084169 transcript_region:SL2.40ch02:11082387..11084169+ go_terms:GO:0004365 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase (AHRD V1 **** D7UNZ5_BRARC); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase " 3 6 8 18 opLeV0100001273 sgn|U232245 CGTGCTCGGGTTCAATATCTCAATGCCTATCATAGATTGCACCAACAGCT Experimental SGN-U592763 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118489504|gb|ABK96554.1| (e_value=1e-41) unknown; (*ATH) AT4G18360.1 (e_value=4e-43) Symbol: None | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative, similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy... ; (*SWP) sp|Q9LRR9|GOX2_ARATH (e_value=1e-41) Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420; Solyc10g007600.2.1 genomic_reference:SL2.40ch10 gene_region:1896939-1901455 transcript_region:SL2.40ch10:1896939..1901455- go_terms:GO:0008891 functional_description:"L-lactate dehydrogenase (AHRD V1 ***- LLDD_VIBPA); contains Interpro domain(s) IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent " 3 2 8 18 opLeV0100001274 sgn|U224219 TATCCGACGTTTTCACTCGCCGGATTATGTTGACTTCCTTGCTACCGTTTCACCGGAGACTCTTCATGAC Experimental SGN-U562851 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|15242626|ref|NP_201116.1| (e_value=0) histone deacetylase [Arabidopsis thaliana]; (*ATH) AT5G63110.1 (e_value=0) | Symbol: None | histone deacetylase, putative, similar to SP:O22446 Histone deacetylase (HD) {Arabidopsis thaliana}; contains Pfam profile PF00850: Histone deacetylase family | chr5:25332863-25335573 REVERSE | Aliases: MDC12.7, MDC12_7; (*SWP) sp|Q9FML2|HDA6_ARATH (e_value=0) Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6; Solyc06g071680.2.1 genomic_reference:SL2.40ch06 gene_region:40535499-40540003 transcript_region:SL2.40ch06:40535499..40540003- go_terms:GO:0003714 functional_description:"Histone deacetylase (AHRD V1 ***- B9I3D0_POPTR); contains Interpro domain(s) IPR003084 Histone deacetylase " 1 5 18 19 opLeV0100001275 sgn|U226422 AAGACGACGGAGAAGGATCGAAACGATCTTGGAGCAGTTGTTGCTCAAGATGAACCATGTCTTAACTGGT Experimental SGN-U564988 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|115477389|ref|NP_001062290.1| (e_value=3e-85) Os08g0525000; (*ATH) AT2G31680.1 (e_value=7e-84) | Symbol: None | Ras-related GTP-binding protein, putative, similar to GTP-binding protein GI:289370 from (Brassica napus) | chr2:13480671-13482129 REVERSE | Aliases: T9H9.20, T9H9_20; (*SWP) sp|P28187|ARA4_ARATH (e_value=4e-82) Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4; Solyc09g097900.2.1 genomic_reference:SL2.40ch09 gene_region:67163971-67169072 transcript_region:SL2.40ch09:67163971..67169072- go_terms:GO:0005525 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_RABIT); contains Interpro domain(s) IPR015595 Rab11-related " 1 1 18 19 opLeV0100001276 sgn|U216859 CACCGGTAAAAACACAGTTACCAAGTGAACCTTTTAGAAGGATAAGTCTTAGTTTCCCATCTGCCACTTT Experimental SGN-U568782 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|18654278|gb|AAL77575.1|L46847_1 (e_value=6e-25) dehydroquinate; (*ATH) AT5G66120.2 (e_value=5e-23) | Symbol: None | 3-dehydroquinate synthase, putative, similar to aroB (Neisseria gonorrhoeae)(GI:2661441); contains 3-dehydroquinate synthase domain PF01761 | chr5:26448602-26451004 REVERSE | Aliases: None; Solyc02g083590.2.1 genomic_reference:SL2.40ch02 gene_region:41515715-41520837 transcript_region:SL2.40ch02:41515715..41520837- go_terms:GO:0008797 functional_description:"Dehydroquinate synthase (AHRD V1 ***- Q8RU74_SOLLC); contains Interpro domain(s) IPR016037 3-dehydroquinate synthase AroB, subgroup " 1 5 2 18 opLeV0100001277 sgn|U235207 CTGAAAACAAAATAACATTCGAGGACAACTATACGGTCGATAAACTCGTGCCCTCTTTCAAACTTGTTGA Experimental SGN-U589147 Tomato 200607#2 [1 ESTs aligned] \N \N 1 1 2 18 opLeV0100001278 sgn|U236618 ATTCAAAGCTATTGTTCAAGACGTAGTGCATTCACCAAGTATGCCAAATCTTCGGCGATTTTTTCCCCTT Experimental SGN-U594718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157345054|emb|CAO71782.1| (e_value=9e-22) unnamed; Solyc04g050620.2.1 genomic_reference:SL2.40ch04 gene_region:46838625-46840442 transcript_region:SL2.40ch04:46838625..46840442- go_terms:GO:0019825 functional_description:"Cytochrome P450" 1 5 6 18 opLeV0100001279 sgn|U222551 GAAATTGAAATGCCAACCCAGGAGCAGAACCATTGTTAAGGGGAAGAGGCTTATTCACCAACCCAGATCG Experimental SGN-U572280 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147866156|emb|CAN84129.1| (e_value=8e-32) hypothetical; (*ATH) AT5G05330.1 (e_value=3e-21) | Symbol: None | hypothetical protein | chr5:1577290-1578834 REVERSE | Aliases: K18I23.13, K18I23_13; Solyc06g050320.2.1 genomic_reference:SL2.40ch06 gene_region:29431334-29434191 transcript_region:SL2.40ch06:29431334..29434191- go_terms:GO:0003700 functional_description:"HMG type nucleosome/chromatin assembly factor (AHRD V1 **-* Q6Z1Z2_ORYSJ); contains Interpro domain(s) IPR009071 High mobility group, superfamily " 1 1 6 18 opLeV0100001280 sgn|U223602 TCACGTGGTGCTTTCATGATATAGAGGAGGCAAAGCACACGGTAACTGGTGAAGATAGGAGTTAAGGAGA Experimental SGN-U588367 Tomato 200607#2 [1 ESTs aligned] \N \N 3 5 18 19 opLeV0100001281 sgn|U228531 ACGAATTCAGTAACCCTTGAGAGTAAGTATTCGAAAAGTTAATTGTGCCGCCTTCTACCATAAACTCCTG Experimental SGN-U574721 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157345813|emb|CAO15328.1| (e_value=1e-48) unnamed; (*ATH) AT1G69010.1 (e_value=3e-33) | Symbol: None | basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain | chr1:25945374-25947495 FORWARD | Aliases: T6L1.19, T6L1_19; (*SWP) sp|Q9CAA4|BIM2_ARATH (e_value=3e-32) Putative transcription factor BIM2 OS=Arabidopsis thaliana GN=BIM2; Solyc05g011810.2.1 genomic_reference:SL2.40ch05 gene_region:5042653-5046761 transcript_region:SL2.40ch05:5042653..5046761+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B5AEK3_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding " 3 1 18 19 opLeV0100001282 sgn|U241951 AAATATGAAGGCATTCTTGCTTCTTTGTGTGATCATTCGCAGATTAAGTGCATGAACCGTGGAAAACCAA Experimental SGN-U601450 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157350578|emb|CAO40627.1| (e_value=9e-46) unnamed; (*ATH) AT1G30690.1 (e_value=1e-32) Symbol: None | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein, contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus; similar to cytosolic factor (Phosphatidylinositol/phosphatidylc... ; (*SWP) sp|Q94C59|PATL4_ARATH (e_value=1e-31) Patellin-4 OS=Arabidopsis thaliana GN=PATL4; Solyc09g025230.2.1 genomic_reference:SL2.40ch09 gene_region:19259914-19261921 transcript_region:SL2.40ch09:19259914..19261921- go_terms:GO:0005215 functional_description:"Phosphatidylinositol transfer protein SFH5 (AHRD V1 *--- C6HEF9_AJECH); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal " 3 5 2 18 opLeV0100001283 sgn|U240035 GTTCCTTTGTTGTCAATTAAAGATGATATCTACACTCAAAATTCTACTCTTAGTTATGCTAACTACACAA Experimental SGN-U601319 Tomato 200607#2 [1 ESTs aligned] \N \N 3 1 2 18 opLeV0100001284 AF403178 AATGGGCGCCTTCACCTTAGGTGTTAACCGTGTAGCTAGAGCAACCGTTCTTCGAGGATGGGAGGCGTAA Experimental SGN-U578318 Tomato 200607#2 [67 ESTs aligned] (*GB) gi|71834851|gb|AAL36888.3|AF403178_1 (e_value=0) NADH-glutamate; (*ATH) AT5G18170.1 (e_value=0) | Symbol: None | glutamate dehydrogenase 1 (GDH1), identical to glutamate dehydrogenase 1 (GDH 1) (Arabidopsis thaliana) SWISS-PROT:Q43314 | chr5:6006046-6008451 FORWARD | Aliases: MRG7.13, MRG7_13; (*SWP) sp|P93541|DHE3_SOLLC (e_value=0) Glutamate dehydrogenase OS=Solanum lycopersicum GN=GDH1; Solyc10g078550.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59665351-59668393 transcript_region:SL2.40ch10:59665351..59668393- go_terms:GO:0004353 functional_description:"Glutamate dehydrogenase (AHRD V1 **** Q8L6A0_TOBAC); contains Interpro domain(s) IPR014362 Glutamate dehydrogenase " 3 5 6 18 opLeV0100001285 sgn|U213164 CTCTCTTCTAGCTCTCTTCAAGGAGAAGAAGGAGAAGCCAAGATCTTAATTTATCTCCTCTCTTTCTTTT Experimental SGN-U579494 Tomato 200607#2 [60 ESTs aligned] (*GB) gi|77999293|gb|ABB16993.1| (e_value=7e-76) unknown [Solanum tuberosum]; (*ATH) AT5G02960.1 (e_value=4e-74) | Symbol: None | 40S ribosomal protein S23 (RPS23B), ribosomal protein S23, Fragaria x ananassa, PIR:S56673 | chr5:693099-694483 REVERSE | Aliases: F9G14.270, F9G14_270; (*SWP) sp|P46297|RS23_FRAAN (e_value=6e-76) 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23; Solyc09g007350.2.1 genomic_reference:SL2.40ch09 gene_region:950238-952160 transcript_region:SL2.40ch09:950238..952160- go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S12 (AHRD V1 ***- RS12_MYCPU); contains Interpro domain(s) IPR005680 Ribosomal protein S23, eukaryotic/archaeal " 1 5 20 19 opLeV0100001286 sgn|U223118 CAAGGCATGGAAATGAGCCTGAAGCGCAGTGTTAGCATCAATCTTGGACCTGAGAGGGGTCTTACTTGTG Experimental SGN-U582310 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157348156|emb|CAO22866.1| (e_value=2e-43) unnamed; Solyc02g062800.2.1 genomic_reference:SL2.40ch02 gene_region:29157365-29159581 transcript_region:SL2.40ch02:29157365..29159581- functional_description:"F-box family protein (AHRD V1 ***- D7MPC5_ARALY); contains Interpro domain(s) IPR017451 F-box associated type 1 " 1 1 20 19 opLeV0100001287 sgn|U231666 GGACATGTCTATAGCCCCTGCCTCGCCAGATAAAGAATGAGGTACAGTTTATCGGACTCTGCTTTTAGAG Experimental SGN-U567611 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|145340387|ref|NP_193587.4| (e_value=1e-34) unknown; (*ATH) AT4G18520.1 (e_value=1e-36) Symbol: None | similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:At3g09040.1); similar to PPR986-12 [Physcomitrella patens] (GB:BAD67155.1); contains InterPro domain PPR repeat (InterPro:IPR002885) | chr4:1021... ; (*SWP) sp|Q9CAA8|PP108_ARATH (e_value=1e-18) Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22; \N \N 1 5 4 18 opLeV0100001288 sgn|U227182 AAAGACAAAGGTTGCTGCAAGTGAATACAGCAGGTTAAGTTCAATGCGTGCAGATTCAGATTCTGCAATT Experimental SGN-U565700 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157355227|emb|CAO48603.1| (e_value=5e-150) unnamed; (*ATH) AT5G53540.1 (e_value=3e-150) Symbol: None | MSP1 protein, putative / intramitochondrial sorting protein, putative, similar to Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4) (Saccharomyces cerevisiae); contains Pfam domain, PF00004: ATPase, AAA family | chr5:21766512-217... ; (*SWP) sp|Q503W7|ATD1B_DANRE (e_value=2e-72) ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b; Solyc03g082630.2.1 genomic_reference:SL2.40ch03 gene_region:46090018-46095945 transcript_region:SL2.40ch03:46090018..46095945+ go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 **-- PRS7_PRUPE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core " 1 1 4 18 opLeV0100001289 sgn|U222912 GATAGTGCTTTTGGCCCTGAATTATCTACCGGTCCATCGATAATTCTGGGCAATTTTCAGATGCAGAATT Experimental SGN-U572753 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157355291|emb|CAO48678.1| (e_value=1e-146) unnamed; (*ATH) AT3G52500.1 (e_value=2e-129) | Symbol: None | aspartyl protease family protein, contains Pfam PF00026: eukaryotic aspartyl protease | chr3:19476477-19478364 REVERSE | Aliases: F22O6.120; (*SWP) sp|Q766C2|NEP2_NEPGR (e_value=8e-41) Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2; Solyc06g074000.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42131696-42133081 transcript_region:SL2.40ch06:42131696..42133081- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-2 (AHRD V1 **-- B6SJT4_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 " 1 5 8 18 opLeV0100001290 sgn|U225066 CTCATGCCACCGGACATCATAACCACCATGCTTGGTGCTATAAGGCCTGAGGTTTACGAGTTTAACTTCT Experimental SGN-U572473 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147833400|emb|CAN64099.1| (e_value=2e-24) hypothetical; (*ATH) AT4G00880.1 (e_value=2e-22) | Symbol: None | auxin-responsive family protein, similar to small auxin up RNA (GI:546362) {Arabidopsis thaliana} | chr4:366373-367274 REVERSE | Aliases: A_TM018A10.6, A_TM018A10_6, T18A10.18, T18A10_18; Solyc06g053260.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:32473512-32473901 transcript_region:SL2.40ch06:32473512..32473901+ functional_description:"Auxin-responsive family protein (AHRD V1 ***- D7LF78_ARALY); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein " 1 1 8 18 opLeV0100001291 sgn|U214833 GCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACA Experimental SGN-U583662 Tomato 200607#2 [62 ESTs aligned] (*GB) gi|157339241|emb|CAO43782.1| (e_value=1e-127) unnamed; (*ATH) AT2G25970.1 (e_value=9e-108) | Symbol: None | KH domain-containing protein | chr2:11078729-11082747 REVERSE | Aliases: F17H15.1, F17H15_1; (*SWP) sp|Q3U0V1|FUBP2_MOUSE (e_value=5e-24) Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp; Solyc12g095950.1.1 evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:63400621-63400963 transcript_region:SL2.40ch12:63400621..63400963+ functional_description:"Unknown Protein (AHRD V1)" 3 5 20 19 opLeV0100001292 sgn|U220591 GAGAATGGCTATTAGCTTAGTGGTAGAGCGGAGGATCCTTGATTATTATGTTGAATGTGAGGTGTTTCAT Experimental SGN-U581732 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|146322420|ref|XP_001481702.1| (e_value=9e-21) ubiquitin; (*ATH) AT3G62250.1 (e_value=2e-22) | Symbol: None | ubiquitin extension protein 5 (UBQ5) / 40S ribosomal protein S27A (RPS27aC), identical to GI:166933, GI:166934 | chr3:23048069-23048772 FORWARD | Aliases: T17J13.210; (*SWP) sp|P61864|UBIQ_YEAST (e_value=2e-21) Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1; \N \N 3 1 20 19 opLeV0100001293 sgn|U218880 GAGTTAGAAGCAGCTGTGATATTGTTCGCGTGGGTGTTCTAGACATTAGAAGAGAAGGTGCGGATTCTGG Experimental SGN-U565505 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|116781857|gb|ABK22270.1| (e_value=6e-44) unknown; (*ATH) AT3G51100.1 (e_value=3e-44) | Symbol: None | expressed protein | chr3:18991265-18993241 REVERSE | Aliases: F24M12.140; Solyc03g033650.2.1 genomic_reference:SL2.40ch03 gene_region:9518412-9525998 transcript_region:SL2.40ch03:9518412..9525998+ functional_description:"Unknown Protein (AHRD V1)" 3 5 4 18 opLeV0100001294 sgn|U220727 CTAAAGTAGCGCTTCTTGAGAGTTCACCAGCAGTTGGTTTTTCGTGAGAATAGCCATCCAGAACTGGCTC Experimental SGN-U576768 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|157349154|emb|CAO24300.1| (e_value=6e-137) unnamed; (*ATH) AT2G46710.1 (e_value=6e-105) Symbol: None | rac GTPase activating protein, putative, similar to rac GTPase activating protein 2 (Lotus japonicus) GI:3695061; contains Pfam profiles PF00620: RhoGAP domain, PF00786: P21-Rho-binding domain | chr2:19199005-19201919 FORWARD | Aliase... ; (*SWP) sp|Q5U2Z7|RHG24_RAT (e_value=6e-14) Rho GTPase-activating protein 24 OS=Rattus norvegicus GN=Arhgap24; Solyc01g096360.2.1 genomic_reference:SL2.40ch01 gene_region:79201448-79205523 transcript_region:SL2.40ch01:79201448..79205523+ go_terms:GO:0005622 functional_description:"Rho GTPase activating protein 2 (AHRD V1 ***- Q6UQ72_ORYSJ); contains Interpro domain(s) IPR000198 RhoGAP " 3 1 4 18 opLeV0100001295 sgn|U215448 TAGTCCCCTTAGCACCTTTCAGCCTGGTCCGTGGTCCATTTCTGTCGGGGTAAAGAGAGCCTTTTACACC Experimental SGN-U577226 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157345723|emb|CAO15021.1| (e_value=6e-19) unnamed; (*ATH) AT5G39520.1 (e_value=2e-17) | Symbol: None | expressed protein, predicted protein, Synechocystis sp., PIR:S77152 | chr5:15840681-15842720 REVERSE | Aliases: MUL8.22, MUL8_22; Solyc02g067120.2.1 genomic_reference:SL2.40ch02 gene_region:31920286-31922757 transcript_region:SL2.40ch02:31920286..31922757- functional_description:"Genomic DNA chromosome 5 P1 clone MUL8 (AHRD V1 ***- Q9FLY2_ARATH); contains Interpro domain(s) IPR018971 Protein of unknown function DUF1997 " 3 5 8 18 opLeV0100001296 sgn|U218167 TTGGGTGAGCGTATCGGACTTGGATCTTATGGGGAGGTCTATCGTGGAGAGTGGCATGGAACTGAAGTAG Experimental SGN-U581260 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157343668|emb|CAO68174.1| (e_value=3e-138) unnamed; (*ATH) AT1G73660.1 (e_value=2e-134) | Symbol: None | protein kinase family protein, contains Pfam profile: PF00069 eukaryotic protein kinase domain | chr1:27695554-27700872 REVERSE | Aliases: F25P22.8, F25P22_8; (*SWP) sp|Q05609|CTR1_ARATH (e_value=1e-88) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1; Solyc03g119140.2.1 genomic_reference:SL2.40ch03 gene_region:61887750-61899889 transcript_region:SL2.40ch03:61887750..61899889+ go_terms:GO:0004712,GO:0004709 functional_description:"Serine/threonine-protein kinase B-raf (AHRD V1 *-** BRAF_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 3 1 8 18 opLeV0100001297 sgn|U218749 CTGAAGCATCTGCGAGCAGTTGCTACAGAGGATGCTCAAAGCTATGCTGAAAGAGAAGGGCTTTCTTTCA Experimental SGN-U588159 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118484335|gb|ABK94045.1| (e_value=4e-95) unknown; (*ATH) AT1G09630.1 (e_value=1e-93) | Symbol: None | Ras-related GTP-binding protein, putative, similar to GTP-binding protein GI:1370146 from (Lotus japonicus) | chr1:3118205-3119710 REVERSE | Aliases: F21M12.2, F21M12_2; (*SWP) sp|O04486|RAA2A_ARATH (e_value=1e-92) Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A; Solyc10g045550.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:30059252-30065074 transcript_region:SL2.40ch10:30059252..30065074+ go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related " 2 6 18 19 opLeV0100001298 sgn|U213806 CTTCAAAACCTGAGTCAGGCGAGGGGCAGCAGTGATGAGAGAGTAGCATAGTCCTGTAGTCTTTTCTTAT Experimental SGN-U580618 Tomato 200607#2 [83 ESTs aligned] (*GB) gi|22217852|emb|CAD43308.1| (e_value=4e-137) 14-3-3 protein [Lycopersicon esculentum]; (*ATH) AT5G16050.1 (e_value=1e-123) | Symbol: None | 14-3-3 protein GF14 upsilon (GRF5), identical to 14-3-3 protein GF14 upsilon GI:2232148 from (Arabidopsis thaliana) | chr5:5243748-5245814 REVERSE | Aliases: F1N13.190, F1N13_190; (*SWP) sp|P42652|14334_SOLLC (e_value=2e-137) 14-3-3 protein 4 OS=Solanum lycopersicum GN=TFT4; Solyc02g063070.2.1 genomic_reference:SL2.40ch02 gene_region:29692418-29699297 transcript_region:SL2.40ch02:29692418..29699297- go_terms:GO:0050815 functional_description:"14-3-3 protein beta/alpha-1 (AHRD V1 **-- 143B1_DANRE); contains Interpro domain(s) IPR000308 14-3-3 protein " 2 2 18 19 opLeV0100001299 sgn|U219338 CAGAGAAGTTTCTCCGCGATTCAGGCCTGAACCACGTTGTAATTCGGTTATGTGGCTTCATGCAGGGCCT Experimental SGN-U580242 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|217072508|gb|ACJ84614.1| (e_value=2e-113) unknown; (*ATH) AT4G35250.1 (e_value=7e-116) | Symbol: None | vestitone reductase-related, low similarity to vestitone reductase (Medicago sativa subsp. sativa) GI:973249 | chr4:16771180-16773369 REVERSE | Aliases: F23E12.190, F23E12_190; (*SWP) sp|P48279|YCF39_CYAPA (e_value=6e-56) Uncharacterized protein ycf39 OS=Cyanophora paradoxa GN=ycf39; Solyc01g112060.2.1 genomic_reference:SL2.40ch01 gene_region:89936997-89940250 transcript_region:SL2.40ch01:89936997..89940250- go_terms:GO:0008152 functional_description:"NmrA family protein (AHRD V1 **-- B2J8Q2_NOSP7); contains Interpro domain(s) IPR016040 NAD(P)-binding domain " 2 6 2 18 opLeV0100001300 sgn|U214890 TGTCAAGATTTATGGTGACCAAGTCGCCAAGCCCGGTTCTATAATCGTTCGCCAGCGCGGTACAAAGTTC Experimental SGN-U581341 Tomato 200607#2 [55 ESTs aligned] (*GB) gi|157360161|emb|CAO69350.1| (e_value=3e-113) unnamed; (*ATH) AT4G27940.1 (e_value=6e-103) | Symbol: None | mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein | chr4:13904480-13907249 FORWARD | Aliases: T13J8.50, T13J8_50; (*SWP) sp|P30155|RK27_TOBAC (e_value=9e-66) 50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum GN=RPL27; Solyc11g068820.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50513890-50516507 transcript_region:SL2.40ch11:50513890..50516507- go_terms:GO:0005840 functional_description:"50S ribosomal protein L27 (AHRD V1 ***- Q8LEF5_ARATH); contains Interpro domain(s) IPR001684 Ribosomal protein L27 " 2 2 2 18 opLeV0100001301 sgn|U220183 ATGCTACTACTAGTAGTGAACAATTTTCCGTCGAAACGCCACGTGGCAAGACATTATTGGTGCCAAATGA Experimental SGN-U575393 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|157347558|emb|CAO18195.1| (e_value=1e-14) unnamed; (*ATH) AT2G28085.1 (e_value=3e-16) | Symbol: None | auxin-responsive family protein, similar to auxin-induced protein TGSAUR22 (GI:10185820) (Tulipa gesneriana) | chr2:11975197-11975697 REVERSE | Aliases: None; \N \N 2 6 6 18 opLeV0100001302 sgn|U214094 CTGATGCGTAGCTGAAGAAATATCACCGGAAAGTTCACAGGAAATAAGTGGCGGCGGTGCGTGGCTCTTG Experimental SGN-U567706 Tomato 200607#2 [64 ESTs aligned] (*GB) gi|157330133|emb|CAO44467.1| (e_value=7e-27) unnamed; (*ATH) AT5G48335.1 (e_value=1e-21) | Symbol: None | expressed protein | chr5:19605231-19606831 FORWARD | Aliases: None; Solyc06g082830.2.1 genomic_reference:SL2.40ch06 gene_region:44784361-44787512 transcript_region:SL2.40ch06:44784361..44787512- functional_description:"Iron-stress related protein (AHRD V1 ***- B4FBU5_MAIZE)" 2 2 6 18 opLeV0100001303 sgn|U240655 TTCACTTGGTCGTCTTTTCTGGCTAGAATCTCGACCTACAGAGTCCGGACGAGCGGTTATTGTGAAGGAA Experimental SGN-U587153 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157335458|emb|CAO61288.1| (e_value=1e-34) unnamed; (*ATH) AT5G36210.1 (e_value=3e-31) | Symbol: None | expressed protein | chr5:14265143-14270460 REVERSE | Aliases: MAB16.20; Solyc04g049630.2.1 genomic_reference:SL2.40ch04 gene_region:41776714-41794055 transcript_region:SL2.40ch04:41776714..41794055- go_terms:GO:0008233 functional_description:"Peptidase S9 prolyl oligopeptidase active site domain protein (AHRD V1 **** B7K7L2_CYAP7); contains Interpro domain(s) IPR001375 Peptidase S9, prolyl oligopeptidase active site region " 4 6 18 19 opLeV0100001304 sgn|U220287 GATTGTCACCTTCAAGAGACCATCATTATTTACCTCACTCCGTCGTCACTCTGCTAACAATATTACTAAG Experimental SGN-U581284 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|62132627|gb|AAX69063.1| (e_value=0) monoterpene; (*ATH) AT3G25810.1 (e_value=4e-129) | Symbol: None | myrcene/ocimene synthase, putative, similar to GI:9957293; contains Pfam profile: PF01397 terpene synthase family | chr3:9432042-9435081 FORWARD | Aliases: K13N2.7; (*SWP) sp|O81193|SSS_SALOF (e_value=1e-134) (+)-sabinene synthase, chloroplastic OS=Salvia officinalis; Solyc01g105900.2.1 genomic_reference:SL2.40ch01 gene_region:85679830-85682286 transcript_region:SL2.40ch01:85679830..85682286+ go_terms:GO:0034768,GO:0050551 functional_description:"(E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain " 4 2 18 19 opLeV0100001305 sgn|U227761 GTGGCTATACTCTGTACTCAATATCTACCGTCTCACCGTCCCAAGATGTCTGAGGTGGTCCGAATGCTCG Experimental SGN-U575382 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147779544|emb|CAN63294.1| (e_value=2e-60) hypothetical; (*ATH) AT2G23950.1 (e_value=3e-55) | Symbol: None | leucine-rich repeat family protein / protein kinase family protein, contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain | chr2:10194171-10197365 REVERSE | Aliases: T29E15.15, T29E15_15; (*SWP) sp|Q94F62|BAK1_ARATH (e_value=5e-30) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1; Solyc07g006110.2.1 genomic_reference:SL2.40ch07 gene_region:965123-969368 transcript_region:SL2.40ch07:965123..969368+ go_terms:GO:0001653,GO:0004675 functional_description:"Receptor like kinase, RLK" 4 6 2 18 opLeV0100001306 sgn|U216853 TCCACAACATGTTAGGCCAATTGTTCCAGCTTCGCCCCAGTCAGAGCAAAGTGTTCCTTTGCTACAAAGC Experimental SGN-U581659 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|147816114|emb|CAN64186.1| (e_value=1e-41) hypothetical; (*ATH) AT3G05680.1 (e_value=7e-25) | Symbol: EMB2016 | expressed protein | chr3:1660558-1671052 REVERSE | Aliases: F18C1.5, F18C1_5, EMB2016, EMBRYO DEFECTIVE 2016; Solyc03g020020.2.1 genomic_reference:SL2.40ch03 gene_region:6871020-6893846 transcript_region:SL2.40ch03:6871020..6893846- functional_description:"AT3G05680-like protein (Fragment) (AHRD V1 *-*- D6PPW0_9BRAS)" 4 2 2 18 opLeV0100001307 sgn|U219429 ATGAGTTCCAGACAAAGAAAAAGCGACAGCAGCAGAGGCAGCATGAGGAAGCAGCTAAACGTCAGAAACT Experimental SGN-U581357 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|1806140|emb|CAA65979.1| (e_value=0) cdc2MsC [Medicago sativa]; (*ATH) AT5G10270.1 (e_value=0) Symbol: CDKC;1 | cyclin-dependent kinase, putative / CDK, putative, similar to cyclin dependent kinase C (Lycopersicon esculentum) gi:15215944:emb:CAC51391 | chr5:3221608-3224766 REVERSE | Aliases: F18D22.40, F18D22_40, CDKC;1, Cyclin-dependent kina... ; (*SWP) sp|Q5JK68|CDKC2_ORYSJ (e_value=0) Cyclin-dependent kinase C-2 OS=Oryza sativa subsp. japonica GN=CDKC-2; Solyc06g073630.2.1 genomic_reference:SL2.40ch06 gene_region:41813794-41819775 transcript_region:SL2.40ch06:41813794..41819775+ go_terms:GO:0004693 functional_description:"Cell division protein kinase 9 (AHRD V1 **** B5X0Q0_SALSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 4 6 6 18 opLeV0100001308 sgn|U221563 GCAACACTCCCTGAAAGTATGTCACCCTGTCCACCACAGCGCCGTGGAGAACCATAAATACTCACTGCAC Experimental SGN-U571066 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157336424|emb|CAO71109.1| (e_value=1e-39) unnamed; (*ATH) AT5G19150.1 (e_value=4e-38) | Symbol: None | carbohydrate kinase family, contains Pfam profile PF01256: Carbohydrate kinase | chr5:6426139-6428469 REVERSE | Aliases: T24G5.50, T24G5_50; (*SWP) sp|Q5R824|YM014_PONAB (e_value=1e-13) Uncharacterized protein FLJ10769 homolog OS=Pongo abelii; Solyc01g079860.2.1 genomic_reference:SL2.40ch01 gene_region:71503246-71513306 transcript_region:SL2.40ch01:71503246..71513306+ go_terms:GO:0005515 functional_description:"Carbohydrate kinase YjeF related protein (AHRD V1 **-- A3DLN4_STAMF); contains Interpro domain(s) IPR000631 Uncharacterised protein family, carbohydrate kinase-related " 4 2 6 18 opLeV0100001309 sgn|U214547 AATGCAACATATATTTTTGATATATACGAAAATCTAGCATGGGCGTCCTGCTGTGCAAGCAAGTGATCCA Experimental SGN-U581672 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|730291|sp|P40972|PEL_TOBAC (e_value=6e-14) Pectate lyase precursor; (*SWP) sp|P40972|PEL_TOBAC (e_value=5e-15) Pectate lyase OS=Nicotiana tabacum; Solyc02g067450.2.1 genomic_reference:SL2.40ch02 gene_region:32221607-32227249 transcript_region:SL2.40ch02:32221607..32227249- go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7M6R5_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen " 2 6 20 19 opLeV0100001310 sgn|U214875 GAGCAACTGAAGCGAATAACTGAAGTGGTTGAGTCTAAGCTGAAGGAAACCACCCATAGGCTTGAAGAGC Experimental SGN-U571497 Tomato 200607#2 [47 ESTs aligned] (*GB) gi|4097585|gb|AAD09518.1| (e_value=2e-157) NTGP4 [Nicotiana tabacum]; (*ATH) AT1G33970.2 (e_value=1e-103) Symbol: None | similar to avirulence-responsive family protein / avirulence induced gene (AIG1) family protein [Arabidopsis thaliana] (TAIR:At4g09950.1); similar to putative NTGP4 [Oryza sativa (japonica cultivar-group)] (GB:XP_466219.1); contains I... ; (*SWP) sp|P54120|AIG1_ARATH (e_value=3e-63) Protein AIG1 OS=Arabidopsis thaliana GN=AIG1; Solyc11g028010.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:16511645-16514975 transcript_region:SL2.40ch11:16511645..16514975+ go_terms:GO:0030246,GO:0005525 functional_description:"GTPase IMAP family member 7 (AHRD V1 *--- C3KGZ8_ANOFI); contains Interpro domain(s) IPR006703 AIG1 " 2 2 20 19 opLeV0100001311 sgn|U225669 GGTGGTAAGTGAGCAAGGTTGATGTGTTCAGAGTCTCCGACCTCCACCTCTTCAGTCTAGTAGGGATTTC Experimental SGN-U583402 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|62183957|gb|AAX73298.1| (e_value=2e-154) putative; (*ATH) AT3G48050.2 (e_value=5e-97) | Symbol: None | bromo-adjacent homology (BAH) domain-containing protein, contains Pfam profile PF01426: BAH domain | chr3:17744518-17750397 REVERSE | Aliases: None; \N \N 2 6 4 18 opLeV0100001312 sgn|U221351 CAAGAAGGTGGAGATACTGGAGGCGTGAACTCTAATCTGTATCCTACGGGGCTAAAAAATGGCAGGTGAA Experimental SGN-U573112 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147789144|emb|CAN60339.1| (e_value=5e-33) hypothetical; (*ATH) AT3G14150.1 (e_value=8e-30) Symbol: None | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative, similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy... ; (*SWP) sp|P05414|GOX_SPIOL (e_value=7e-24) Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea; \N \N 2 2 4 18 opLeV0100001313 sgn|U215733 GACCTCCTGATGGACATGGCAGTGATGATGAGGGTCATCATTGATAGTCCGTCTTGCAATTTTTTGTCGG Experimental SGN-U588058 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|82623399|gb|ABB87114.1| (e_value=1e-30) cytochrome; (*ATH) AT3G15640.2 (e_value=2e-26) |; \N \N 2 6 8 18 opLeV0100001314 sgn|U226939 AACGGTGACGACGATAGAGTAATTGACGGTAGCAGTGGAGCTGAGAGTTTACGAGAATCAAAGACGGGAG Experimental SGN-U576385 Tomato 200607#2 [3 ESTs aligned] Solyc07g005650.2.1 genomic_reference:SL2.40ch07 gene_region:518591-524775 transcript_region:SL2.40ch07:518591..524775- go_terms:GO:0005515,GO:0003677 functional_description:"WRKY transcription factor (AHRD V1 ***- D4P3Y2_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY " 4 2 20 19 opLeV0100001315 sgn|U221728 AGGCATCCGCCATGGTGGGAAGAGAGCTCTCACCTTGACGAAAGGATTGGCAGGACGAAGATCCAGAACA Experimental SGN-U569349 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157357079|emb|CAO63567.1| (e_value=8e-60) unnamed; (*ATH) AT4G20280.1 (e_value=2e-58) Symbol: None | transcription initiation factor IID (TFIID) 28 kDa subunit (TAFII-28) family protein, similar to SP:Q15544 Transcription initiation factor TFIID 28 kDa subunit (TAFII-28) (TAFII28) (TFIID subunit p30-beta) {Homo sapiens}; contains Pfa... ; (*SWP) sp|Q54XM9|TAF11_DICDI (e_value=4e-23) Transcription initiation factor TFIID subunit 11 OS=Dictyostelium discoideum GN=taf11; Solyc05g010560.1.1 evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:4773117-4773422 transcript_region:SL2.40ch05:4773117..4773422+ functional_description:"Unknown Protein (AHRD V1)" 4 6 4 18 opLeV0100001316 sgn|U224283 TTGAATCATAGTAGGTTGCAGGAACTGTTGCTGCGGAACTGCACTTGTACTGGCACTGTGAAACAACTGG Experimental SGN-U600858 Tomato 200607#2 [1 ESTs aligned] Solyc06g072460.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:41085510-41086622 transcript_region:SL2.40ch06:41085510..41086622+ go_terms:GO:0019992,GO:0020037 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 *--- Q8H5Y9_ORYSJ); contains Interpro domain(s) IPR011424 C1-like " 4 2 4 18 opLeV0100001317 sgn|U225275 AGTATTTCCAACTGGAACGCGTTACGACACTATGTACTCGTACAAGGATGTCGACAAGCGACGAGATTGG Experimental SGN-U573188 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|12830362|emb|CAC29060.1| (e_value=0) anthranilate synthase alpha subunit [Catharanthus roseus]; (*ATH) AT2G29690.1 (e_value=0) | Symbol: None | anthranilate synthase, alpha subunit, component I-2 (ASA2), identical to SP:P32069 | chr2:12700948-12704042 FORWARD | Aliases: T27A16.21, T27A16_21; (*SWP) sp|P32069|TRPX_ARATH (e_value=0) Anthranilate synthase component I-2, chloroplastic OS=Arabidopsis thaliana GN=ASA2; Solyc06g006100.2.1 genomic_reference:SL2.40ch06 gene_region:1130983-1138234 transcript_region:SL2.40ch06:1130983..1138234+ go_terms:GO:0046820,GO:0004049 functional_description:"Anthranilate synthase component I family protein expressed (AHRD V1 **** Q10B97_ORYSJ); contains Interpro domain(s) IPR005256 Anthranilate synthase component I " 4 6 8 18 opLeV0100001318 sgn|U218907 AAATGCCTCTGGGTCTTCAGCAAGACCCAGTGGGTCGAAGCTGCCACCAG Experimental SGN-U592606 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|217944|dbj|BAA03104.1| (e_value=1e-45) light-harvesting chlorophyll a/b-binding protein (LHCP) precursor [Lactuca sativa]; (*ATH) AT3G27690.1 (e_value=2e-44) Symbol: None | chlorophyll A-B binding protein (LHCB2:4), nearly identical to Lhcb2 protein (Arabidopsis thaliana) GI:4741950; similar to chlorophyll A-B binding protein 151 precursor (LHCP) GB:P27518 from (Gossypium hirsutum); contains Pfam PF00504... ; (*SWP) sp|P10707|CB2D_SOLLC (e_value=1e-46) Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D; Solyc02g070970.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:35090449-35091246 transcript_region:SL2.40ch02:35090449..35091246+ go_terms:GO:0005515,GO:0016168 functional_description:"Chlorophyll a/b binding protein (AHRD V1 **** Q41422_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein " 4 2 8 18 opLeV0100001319 sgn|U231545 CTGGTCAAATGAAGACACCTAATTCTCGCTCGACTTTGGCTTTGGAAAATGATCGAGAGATTATAGTCAT Experimental SGN-U582055 Tomato 200607#2 [2 ESTs aligned] \N \N 2 1 18 19 opLeV0100001320 sgn|U223062 CATCCGTTTCCTCATCTTCATTGATGTCACCGTCATCAAACTCAGCAAATGAGTCTGCTCACTGTGATGG Experimental SGN-U564084 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157345748|emb|CAO15046.1| (e_value=6e-22) unnamed; (*ATH) AT5G61260.1 (e_value=2e-15) | Symbol: None | chromosome scaffold protein-related, contains weak similarity to chromosome scaffold protein p85 (Moneuplotes crassus) gi:25990101:gb:AAN75020 | chr5:24654335-24655825 FORWARD | Aliases: MFB13.3, MFB13_3; Solyc06g069620.1.1 evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:39745485-39746951 transcript_region:SL2.40ch06:39745485..39746951- functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SDA2_ARATH); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant " 2 5 2 18 opLeV0100001321 sgn|U232060 TGCGTCCACCAACTTGGAATTTTTTTTCTTTTTTGGGCTCCACCCCCCTGGGTCAACAGCTAATGGAAAA Experimental \N \N \N \N 2 1 2 18 opLeV0100001322 sgn|U233542 AAAAGGGCTGATTTTGTAAGGAATGCTTACCCCACAACCACTAGGTATACCAGGGGTTTTGCCTAAATTA Experimental SGN-U590602 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|21952514|gb|AAM82606.1| (e_value=2e-19) putative non-specific lipid transfer protein StnsLTP [Solanum tuberosum]; (*SWP) sp|Q03461|NLTP2_TOBAC (e_value=5e-20) Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum; Solyc10g075070.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58109657-58110129 transcript_region:SL2.40ch10:58109657..58110129- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- A7UGG9_SOLTU); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical " 2 5 6 18 opLeV0100001323 sgn|U212806 AAAAAACTAAACGCAGGTTCGACAACTACGGTAAACAGGGACTGTTATGTGGATCGGATGGACTGCCACA Experimental SGN-U580566 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|30013659|gb|AAP03872.1| (e_value=7e-90) putative photosystem I subunit III precursor [Nicotiana tabacum]; (*ATH) AT1G31330.1 (e_value=2e-78) | Symbol: None | photosystem I reaction center subunit III family protein, contains Pfam profile: PF02507: photosystem I reaction center subunit III | chr1:11214805-11215992 REVERSE | Aliases: T19E23.12, T19E23_12; (*SWP) sp|P46486|PSAF_FLATR (e_value=1e-80) Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF; Solyc02g069450.2.1 genomic_reference:SL2.40ch02 gene_region:33915687-33919252 transcript_region:SL2.40ch02:33915687..33919252- go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit III (AHRD V1 ***- Q9XQB4_PHAAU); contains Interpro domain(s) IPR003666 Photosystem I reaction centre protein PsaF, subunit III " 2 1 6 18 opLeV0100001324 sgn|U219616 GAATTTCAGCATCGGGTATGGAATCCTTCACGGTCAGAGCCAAGAGATGGTATTTGCGATGAGTCATGGG Experimental SGN-U576944 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157355178|emb|CAO48554.1| (e_value=0) unnamed; (*ATH) AT5G54130.2 (e_value=0) |; (*SWP) sp|O81916|YC22_ARATH (e_value=5e-158) Uncharacterized calcium-binding protein At1g02270 OS=Arabidopsis thaliana GN=At1g02270; Solyc03g080080.2.1 genomic_reference:SL2.40ch03 gene_region:45528423-45532481 transcript_region:SL2.40ch03:45528423..45532481+ go_terms:GO:0005509 functional_description:"Carbon catabolite repressor protein 4 homolog 3 (AHRD V1 *--- CCR4C_ARATH); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase " 4 5 18 19 opLeV0100001325 sgn|U221260 CAGGAACCGAACCGGAACGGCGGTATTAGAACTCCGTCTCCCCGGTCGAGAAATCAATCTCAGTTTCACT Experimental SGN-U581222 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157344292|emb|CAO69225.1| (e_value=2e-59) unnamed; (*ATH) AT3G55390.1 (e_value=1e-52) Symbol: None | integral membrane family protein, MtN24, Medicago truncatula, EMBL:MTY15290; contains TIGRFAM TIGR01569 : plant integral membrane protein TIGR01569; contains Pfam PF04535 : Domain of unknown function (DUF588) | chr3:20545592-20546658 ... ; (*SWP) sp|Q9M2U0|U497M_ARATH (e_value=9e-52) UPF0497 membrane protein At3g55390 OS=Arabidopsis thaliana GN=At3g55390; Solyc05g054560.2.1 genomic_reference:SL2.40ch05 gene_region:63599769-63601868 transcript_region:SL2.40ch05:63599769..63601868+ functional_description:"UPF0497 membrane protein 2 (AHRD V1 ***- U4972_POPTR); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup " 4 1 18 19 opLeV0100001326 sgn|U234909 ATCTATTAACTCCATGTCATCGTCCGCCGCGTCATTAGTGATTGAATCTTGAACTAGTGAACCAACTGGA Experimental SGN-U575330 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|209954733|dbj|BAG80557.1| (e_value=0) UDP-glucose:glucosyltransferase; (*ATH) AT5G65550.1 (e_value=4e-50) Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase ;similar to flavonol 3-O-glucosyltransferase (anthocyanin rhamnosyl transferase) from Petunia hybri... ; (*SWP) sp|Q8GVE3|FLRT_CITMA (e_value=8e-78) Flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase OS=Citrus maxima GN=C12RT1; Solyc05g005930.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:711348-712688 transcript_region:SL2.40ch05:711348..712688- go_terms:GO:0016757 functional_description:"UDP-glucosyltransferase (AHRD V1 **-- B3VI56_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase " 4 5 2 18 opLeV0100001327 sgn|U221155 CAGACATAGTTCAAAAGGTGGACAAGTGCATCCTCACATCCAAGACCAGCAACACCAAGAGCCATGTGCT Experimental SGN-U589712 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|115444193|ref|NP_001045876.1| (e_value=8e-96) Os02g0146400; (*ATH) AT5G64270.1 (e_value=2e-97) Symbol: None | splicing factor, putative, similar to splicing factor 3B subunit 1 (Spliceosome associated protein 155) (SAP 155) (SF3b155) (Pre-mRNA splicing factor SF3b 155 kDa subunit) (146 kDa nuclear protein) SP:O57683 from (Xenopus laevis) | ch... ; (*SWP) sp|O75533|SF3B1_HUMAN (e_value=1e-89) Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1; Solyc10g081090.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61572434-61572817 transcript_region:SL2.40ch10:61572434..61572817+ go_terms:GO:0005488 functional_description:"Splicing factor 3B subunit 1 (AHRD V1 **-- B3RQX5_TRIAD); contains Interpro domain(s) IPR016024 Armadillo-type fold " 4 1 2 18 opLeV0100001328 sgn|U222038 CCAATGCGGAACTCTTTGATCGTGTTTCACAGAGCCACAATAGAGAGGAACATTCTTATCCCGTGCTGCT Experimental SGN-U572805 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147864337|emb|CAN83006.1| (e_value=2e-143) hypothetical; (*ATH) AT3G04380.2 (e_value=1e-124) Symbol: None | SET domain-containing protein (SUVR4), nearly identical to Su(VAR)3-9-related protein 4 (Arabidopsis thaliana) GI:17066863; contains Pfam profiles PF00856: SET domain, PF05033: Pre-SET motif; identical to cDNA Su(VAR)3-9-related prote... ; (*SWP) sp|Q8W595|SUVR4_ARATH (e_value=3e-122) Histone-lysine N-methyltransferase SUVR4 OS=Arabidopsis thaliana GN=SUVR4; Solyc06g083760.2.1 genomic_reference:SL2.40ch06 gene_region:45384714-45391381 transcript_region:SL2.40ch06:45384714..45391381+ go_terms:GO:0005634 functional_description:"Histone-lysine n-methyltransferase (AHRD V1 *-*- Q0IEE2_AEDAE); contains Interpro domain(s) IPR001214 SET " 4 5 6 18 opLeV0100001329 sgn|U222688 GAATATCACACACCCGGTGGGCCACACATGGGGAGCCTGCTCCTAAGAATAGTCATCCTCAAAGTTCTGG Experimental SGN-U586959 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|9294678|dbj|BAB03027.1| (e_value=3e-43) glutamine-fructose-6-phosphate transaminase 2 [Arabidopsis thaliana]; (*ATH) AT3G24090.1 (e_value=1e-45) Symbol: None | glucosamine--fructose-6-phosphate aminotransferase (isomerizing), putative / hexosephosphate aminotransferase, putative / glucosamine-6-phosphate synthase, putative / D-fructose-6-phosphate amidotransferase, putative / GLCN6P synthase... ; (*SWP) sp|Q06210|GFPT1_HUMAN (e_value=7e-21) Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Homo sapiens GN=GFPT1; Solyc01g087870.2.1 genomic_reference:SL2.40ch01 gene_region:74487683-74501744 transcript_region:SL2.40ch01:74487683..74501744- go_terms:GO:0008152,GO:0005975,GO:0005737 functional_description:"Glucosamine--fructose-6-phosphate aminotransferase (AHRD V1 ***- A8IZE7_CHLRE); contains Interpro domain(s) IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising " 4 1 6 18 opLeV0100001330 sgn|U224244 TCTTGTTAATTTGGTGGAATTATACATGGAGGCAAACCAGATTAGCGGCTCTATCCCGATCTCCCTAATC Experimental SGN-U593053 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|209586197|gb|ACI64882.1| (e_value=3e-17) predicted; (*ATH) AT3G11080.1 (e_value=3e-17) | Symbol: None | disease resistance family protein, contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2 (Lycopersicon pimpinellifolium) gi:1184077:gb:AAC15780 | chr3:3470446-3473318 FORWARD | Aliases: F11B9.4; (*SWP) sp|Q9ZPS9|BRL2_ARATH (e_value=4e-12) Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL1; Solyc03g006100.2.1 genomic_reference:SL2.40ch03 gene_region:771603-775358 transcript_region:SL2.40ch03:771603..775358+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK" 2 5 20 19 opLeV0100001331 sgn|U227198 CTGCGTGCGGAGTTTCCTTCGTAGGGAGTGCTTTATCCCCAAAGTGGGACCTTCCCAACGCAAATCCGGA Experimental SGN-U595161 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15485612|emb|CAC67408.1| (e_value=2e-21) insulin degrading enzyme [Lycopersicon esculentum]; (*ATH) AT3G57470.1 (e_value=5e-16) | Symbol: None | peptidase M16 family protein / insulinase family protein, contains weak similarity to Pfam domain, PF05193: Peptidase M16 inactive domain | chr3:21280238-21286904 REVERSE | Aliases: T8H10.70; \N \N 2 1 20 19 opLeV0100001332 sgn|U212736 ATCAGCTGCTTCTTCTTTTACAGGACTCAATTTGGGCAAAGCTGCTGCTCTCCCTAACACTTGTAGTGTC Experimental SGN-U593571 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|71360928|emb|CAJ19705.1| (e_value=7e-61) non-specific lipid transfer protein [Lycopersicon esculentum]; (*ATH) AT2G38540.1 (e_value=8e-26) | Symbol: None | nonspecific lipid transfer protein 1 (LTP1), identical to SP:Q42589 | chr2:16137428-16138252 FORWARD | Aliases: T6A23.26, T6A23_26; (*SWP) sp|O24038|NLTP2_SOLPN (e_value=3e-57) Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2; Solyc10g075100.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58135114-58135744 transcript_region:SL2.40ch10:58135114..58135744- go_terms:GO:0005516,GO:0005319 functional_description:"Non-specific lipid-transfer protein (AHRD V1 **** Q4A1N1_SOLLC); contains Interpro domain(s) IPR000528 Plant lipid transfer protein/Par allergen " 2 5 4 18 opLeV0100001333 sgn|U218508 GAGTCGACTGTCTCTAATTTGGTTCAAGTTATCTGAGCCAAATGAAACGACCCTTTCTCGTTGAACACAA Experimental SGN-U573368 Tomato 200607#2 [11 ESTs aligned] (*ATH) AT2G33390.1 (e_value=7e-11) | Symbol: None | expressed protein | chr2:14158655-14159820 FORWARD | Aliases: F4P9.16, F4P9_16; Solyc09g090540.2.1 genomic_reference:SL2.40ch09 gene_region:65379328-65382647 transcript_region:SL2.40ch09:65379328..65382647- functional_description:"Unknown Protein (AHRD V1)" 2 1 4 18 opLeV0100001334 sgn|U218461 AAATAAGGATGCAAAGATTATAGTCGCTTGCTCATCCGGTGGTACAATGAAGCCTACCCAAAATCTTCCC Experimental SGN-U570344 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|118489060|gb|ABK96337.1| (e_value=2e-77) unknown; (*ATH) AT4G27700.1 (e_value=4e-70) | Symbol: None | rhodanese-like domain-containing protein, contains rhodanese-like domain PF00581 | chr4:13826380-13827829 REVERSE | Aliases: T29A15.190, T29A15_190; Solyc06g053140.2.1 genomic_reference:SL2.40ch06 gene_region:32363112-32365707 transcript_region:SL2.40ch06:32363112..32365707+ functional_description:"Senescence-associated protein DIN1 (AHRD V1 *--- B6U016_MAIZE); contains Interpro domain(s) IPR001763 Rhodanese-like " 2 5 8 18 opLeV0100001335 sgn|U216000 GGACGTGGTGGTGGTGGCCGGAAGTGTTGTTCCTAGATACAAAGGTGAATGAATATAGTAATATATAGTT Experimental SGN-U592082 Tomato 200607#2 [1 ESTs aligned] Solyc09g082810.2.1 genomic_reference:SL2.40ch09 gene_region:63876458-63877767 transcript_region:SL2.40ch09:63876458..63877767+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010800 Glycine rich " 2 1 8 18 opLeV0100001336 sgn|U220419 GGTCCTGAGCGGTGTGCCGGAGGATAGATATCAGCGGATGAGGGGATTGTGTGTAGCGGCGGCTCACCAT Experimental SGN-U570342 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157344199|emb|CAO69132.1| (e_value=2e-70) unnamed; (*ATH) AT4G38040.1 (e_value=2e-37) | Symbol: None | exostosin family protein, contains Pfam profile: PF03016 Exostosin family | chr4:17867432-17869296 FORWARD | Aliases: F20D10.160, F20D10_160; Solyc11g011190.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4252106-4253152 transcript_region:SL2.40ch11:4252106..4253152- go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 **-- D7M9K9_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like " 4 5 20 19 opLeV0100001337 sgn|U215231 TAGCCCTCGAGCATTTGCCTCTGATTTTGCTGCAGCCATGATTAAAATGGGAGATATTAGTCCTCTAACT Experimental SGN-U579084 Tomato 200607#2 [30 ESTs aligned] (*GB) gi|94962424|gb|ABF48527.1| (e_value=8e-161) cell; (*ATH) AT1G14550.1 (e_value=1e-110) | Symbol: None | anionic peroxidase, putative, similar to anionic peroxidase GI:170202 from (Nicotiana sylvestris) | chr1:4979023-4980319 FORWARD | Aliases: F14L17.33, F14L17_33; (*SWP) sp|Q02200|PERX_NICSY (e_value=2e-152) Lignin-forming anionic peroxidase OS=Nicotiana sylvestris; Solyc11g018800.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:9597159-9598442 transcript_region:SL2.40ch11:9597159..9598442- go_terms:GO:0055114 functional_description:"Peroxidase 2 (AHRD V1 ***- Q9SSZ8_SCUBA); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial " 4 1 20 19 opLeV0100001338 sgn|U221776 GTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGC Experimental SGN-U563477 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|5123836|emb|CAB45387.1| (e_value=0) NAD-malate dehydrogenase [Nicotiana tabacum]; (*ATH) AT3G47520.1 (e_value=1e-161) Symbol: None | malate dehydrogenase (NAD), chloroplast (MDH), identical to chloroplast NAD-malate dehydrogenase (Arabidopsis thaliana) GI:3256066; contains InterPro entry IPR001236: Lactate/malate dehydrogenase; contains Pfam profiles PF00056: lacta... ; (*SWP) sp|Q9SN86|MDHP_ARATH (e_value=1e-160) Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520; Solyc09g091070.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65753926-65754822 transcript_region:SL2.40ch09:65753926..65754822+ go_terms:GO:0030060 functional_description:"Malate dehydrogenase (AHRD V1 **** O48906_MEDSA); contains Interpro domain(s) IPR010097 Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria " 4 5 4 18 opLeV0100001339 sgn|U212962 CTGGCATGGAGTGTTGCATTATGTCACTTGCAAGGTAACCTTGCCTACTTGTTATTGCCTTGCCAATGGC Experimental SGN-U578712 Tomato 200607#2 [86 ESTs aligned] (*GB) gi|77999273|gb|ABB16983.1| (e_value=6e-128) unknown [Solanum tuberosum]; (*ATH) AT3G25520.1 (e_value=3e-115) | Symbol: None | 60S ribosomal protein L5, similar to 60S ribosomal protein L5 GB:P49625 from (Oryza sativa) | chr3:9270524-9272626 REVERSE | Aliases: MWL2.17; (*SWP) sp|Q6UNT2|RL5_CUCSA (e_value=3e-117) 60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5; Solyc06g082870.2.1 genomic_reference:SL2.40ch06 gene_region:44805209-44808923 transcript_region:SL2.40ch06:44805209..44808923+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L5-1 (AHRD V1 ***- B6THG9_MAIZE); contains Interpro domain(s) IPR005485 Ribosomal protein L5, eukaryotic " 4 1 4 18 opLeV0100001340 sgn|U231291 TGGAAGCTTAGATGAGATCATCACAGATAGATCCAAATTCACATGGAAGAAACGAATCAACGTGGCAATT Experimental SGN-U586032 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157342386|emb|CAO64499.1| (e_value=5e-66) unnamed; (*ATH) AT1G74360.1 (e_value=4e-65) Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, similar to brassinosteroid insensitive 1 GB:AAC49810 (putative receptor protein kinase); contains Pfam profiles: PF00560 Leucine Rich Repeat (17 repeats), PF00069 Eukaryotic ... ; (*SWP) sp|Q9LYN8|EXS_ARATH (e_value=5e-36) Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS; Solyc03g115610.2.1 genomic_reference:SL2.40ch03 gene_region:59310815-59314687 transcript_region:SL2.40ch03:59310815..59314687- go_terms:GO:0042803 functional_description:"Receptor like kinase, RLK" 4 5 8 18 opLeV0100001341 sgn|U216740 CCAGAGAACCTTAGCTCACAACCATGACATCTTCATGTACAGAGGGGATA Experimental SGN-U587873 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157344721|emb|CAO70476.1| (e_value=3e-19) unnamed; (*ATH) AT2G44670.1 (e_value=5e-18) | Symbol: None | senescence-associated protein-related, similar to senescence-associated protein SAG102 (GI:22331931) (Arabidopsis thaliana); | chr2:18432255-18433135 FORWARD | Aliases: F16B22.16; Solyc01g088660.2.1 genomic_reference:SL2.40ch01 gene_region:75185596-75186764 transcript_region:SL2.40ch01:75185596..75186764+ functional_description:"Os04g0585900 protein (Fragment) (AHRD V1 *-*- Q0JAP2_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 " 4 1 8 18 opLeV0100001342 sgn|U214428 CTCAGATCCCTTGGAAGAAGACTGCAAGCTTGGTCCTGTGATTAGTCGTGGACAGTATGAGAAGATCTTG Experimental SGN-U577228 Tomato 200607#2 [78 ESTs aligned] (*GB) gi|209362343|gb|ACI43573.1| (e_value=0) aminoaldehyde; (*ATH) AT1G74920.1 (e_value=0) Symbol: None | betaine-aldehyde dehydrogenase, putative, identical to betaine-aldehyde dehydrogenase, chloroplast precursor (BADH) (Arabidopsis thaliana) SWISS-PROT:Q9S795; strong similarity to betaine aldehyde dehydrogenase (Amaranthus hypochondria... ; (*SWP) sp|O04895|BADH_AMAHP (e_value=0) Betaine aldehyde dehydrogenase, chloroplastic OS=Amaranthus hypochondriacus GN=BADH4; Solyc03g113800.2.1 genomic_reference:SL2.40ch03 gene_region:57894787-57902443 transcript_region:SL2.40ch03:57894787..57902443- go_terms:GO:0004029 functional_description:"Betaine aldehyde dehydrogenase (AHRD V1 **** D2DEK8_LYCBA); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase " 1 4 18 19 opLeV0100001343 sgn|U215003 GCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTG Experimental SGN-U579030 Tomato 200607#2 [41 ESTs aligned] (*GB) gi|18407411|ref|NP_566107.1| (e_value=6e-44) small nuclear ribonucleo protein D2 -related [Arabidopsis thaliana]; (*ATH) AT2G47640.4 (e_value=4e-46) |; (*SWP) sp|Q3SZF8|SMD2_BOVIN (e_value=3e-37) Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2; \N \N 1 8 2 18 opLeV0100001344 sgn|U218210 CTCTCAACTTTTTGTTCTAGGGTTTTCTTCTCTTTCAGCTCTCTTGTCTATTTAGCTCTAATGGTGAAAT Experimental SGN-U588150 Tomato 200607#2 [1 ESTs aligned] \N \N 1 4 2 18 opLeV0100001345 sgn|U213591 AGTTGCTAACCGTGGTTGCTCAATCCGTGTGGGGCGTGACACTGAGAAGGAAGGCAAGGGTTATTTGGAA Experimental SGN-U590211 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|193290696|gb|ACF17656.1| (e_value=8e-93) putative; (*ATH) AT5G35630.3 (e_value=4e-91) |; (*SWP) sp|O22506|GLNA2_DAUCA (e_value=4e-91) Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2; Solyc01g080280.2.1 genomic_reference:SL2.40ch01 gene_region:72039739-72045026 transcript_region:SL2.40ch01:72039739..72045026+ go_terms:GO:0004356 functional_description:"Glutamine synthetase (AHRD V1 ***- B5LAU9_CAPAN); contains Interpro domain(s) IPR008146 Glutamine synthetase, catalytic region " 1 8 6 18 opLeV0100001346 sgn|U216942 CTTCTTCACTGAAACGAAAGTGCAGTTTATCGGAAAATGCCGTATCTGGAAAGTGCAGTGGATCTTCCGG Experimental SGN-U565155 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|118488759|gb|ABK96190.1| (e_value=1e-79) unknown; (*ATH) AT2G23320.1 (e_value=2e-57) | Symbol: None | WRKY family transcription factor, identical to WRKY DNA-binding protein 15 GI:13506742 from (Arabidopsis thaliana) | chr2:9932013-9933452 FORWARD | Aliases: T20D16.5, T20D16_5; (*SWP) sp|O22176|WRK15_ARATH (e_value=2e-56) Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15; Solyc02g093050.2.1 genomic_reference:SL2.40ch02 gene_region:48575427-48577339 transcript_region:SL2.40ch02:48575427..48577339+ go_terms:GO:0005516 functional_description:"WRKY transcription factor 26 (AHRD V1 ***- C9DI15_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY " 1 4 6 18 opLeV0100001347 sgn|U226445 GCTCTGCTTACATGTGAGTTCCCTTTGAAGCCAATTGTGAGAACAGAGTGCTTCATATACTATGTTATCA Experimental SGN-U580624 Tomato 200607#2 [3 ESTs aligned] (*ATH) AT5G45550.1 (e_value=7e-11) | Symbol: None | mob1/phocein family protein, contains Pfam profile: PF03637 Mob1/phocein family | chr5:18479444-18482248 FORWARD | Aliases: MFC19.22, MFC19_22; \N \N 3 8 2 18 opLeV0100001348 sgn|U239387 GTCTCTGTTCAGGGACATGTGGTTAACCTGGTATCTGATACAACAAAGGAGCTTCTCCGTGTATTTGCCG Experimental SGN-U563090 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157335062|emb|CAO60892.1| (e_value=3e-103) unnamed; (*ATH) AT2G34210.1 (e_value=2e-88) | Symbol: None | KOW domain-containing transcription factor family protein | chr2:14453017-14457601 FORWARD | Aliases: F13P17.5, F13P17_5; (*SWP) sp|O80770|SPT52_ARATH (e_value=2e-87) Putative transcription elongation factor SPT5 homolog 2 OS=Arabidopsis thaliana GN=At2g34210; Solyc04g064700.2.1 genomic_reference:SL2.40ch04 gene_region:54958305-54972460 transcript_region:SL2.40ch04:54958305..54972460+ go_terms:GO:0016944 functional_description:"Transcription elongation factor spt5 (AHRD V1 *-** B6JZQ2_SCHJY); contains Interpro domain(s) IPR017071 Transcription elongation factor Spt5 " 3 4 2 18 opLeV0100001349 sgn|U228947 ACGATGTCATGTTGCTTGACTGGGTGAAAGGACTCCTCAAAGAGAAGAAACTGGAAATGCTGGTTGACCC Experimental SGN-U574668 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|126466786|gb|ABO14172.1| (e_value=9e-115) somatic; (*ATH) AT1G34210.1 (e_value=4e-110) Symbol: None | somatic embryogenesis receptor-like kinase 2 (SERK2), nearly identical to somatic embryogenesis receptor-like kinase 2 (Arabidopsis thaliana) GI:14573457; contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase ... ; (*SWP) sp|Q94F62|BAK1_ARATH (e_value=3e-106) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1; Solyc04g072570.2.1 genomic_reference:SL2.40ch04 gene_region:57137144-57143849 transcript_region:SL2.40ch04:57137144..57143849- go_terms:GO:0042802,GO:0004675 functional_description:"Receptor like kinase, RLK" 3 8 6 18 opLeV0100001350 sgn|U219270 AAGCTACTGCAGTCTCACAGATGGAGGCAGCAATTGATGCATTATCACGAGAATTGACCAAGCTGCGAAC Experimental SGN-U578923 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|51971543|dbj|BAD44436.1| (e_value=5e-72) putative; (*ATH) AT3G01800.1 (e_value=4e-74) Symbol: None | ribosome recycling factor family protein / ribosome releasing factor family protein, similar to SP:P82231 Ribosome recycling factor, chloroplast precursor (Ribosome releasing factor, chloroplast) (RRF) (CpFrr) (RRFHCP) {Spinacia olera... ; (*SWP) sp|A9GGK7|RRF_SORC5 (e_value=4e-27) Ribosome-recycling factor OS=Sorangium cellulosum (strain So ce56) GN=frr; Solyc11g007740.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1970357-1974751 transcript_region:SL2.40ch11:1970357..1974751+ go_terms:GO:0006412,GO:0005737 functional_description:"Ribosome-recycling factor (AHRD V1 ***- Q1K328_DESAC); contains Interpro domain(s) IPR015998 Ribosome recycling factor, bacterial-like " 1 8 20 19 opLeV0100001351 sgn|U215023 GCCATTAAAGTTTCAAGTTCCAATTCCTCAGCCTCAAATACTCCAGCAGGCAGCATCCCACCTCCTTCAT Experimental SGN-U578692 Tomato 200607#2 [31 ESTs aligned] (*GB) gi|10798754|dbj|BAB16429.1| (e_value=4e-32) NtEIG-A1 [Nicotiana tabacum]; (*ATH) AT5G20230.1 (e_value=2e-17) | Symbol: None | plastocyanin-like domain-containing protein | chr5:6826508-6827601 FORWARD | Aliases: F5O24.120, F5O24_120; (*SWP) sp|P29602|CPC_CUCSA (e_value=2e-17) Cucumber peeling cupredoxin OS=Cucumis sativus; Solyc12g042780.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43646363-43648240 transcript_region:SL2.40ch12:43646363..43648240- go_terms:GO:0009055 functional_description:"Blue copper protein (Fragment) (AHRD V1 *--- O82576_MAIZE); contains Interpro domain(s) IPR008972 Cupredoxin " 1 4 20 19 opLeV0100001352 sgn|U213470 TTCACATCTCGCTTCGAGTACACGGACAATGTCCAATCCTCTGAGATGAGTTCTGGACGTGTTCTTAACC Experimental SGN-U582607 Tomato 200607#2 [51 ESTs aligned] (*GB) gi|157341951|emb|CAO63407.1| (e_value=8e-151) unnamed; (*ATH) AT4G17890.1 (e_value=8e-133) | Symbol: None | human Rev interacting-like family protein / hRIP family protein, contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP) | chr4:9937049-9939506 FORWARD | Aliases: T6K21.1; (*SWP) sp|Q8H100|AGD8_ARATH (e_value=7e-132) Probable GTPase-activating protein 8 OS=Arabidopsis thaliana GN=AGD8; Solyc08g005070.2.1 genomic_reference:SL2.40ch08 gene_region:51697-56135 transcript_region:SL2.40ch08:51697..56135+ go_terms:GO:0008060 functional_description:"ADP-ribosylation factor GTPase-activating protein 3 (AHRD V1 **** B6TII3_MAIZE); contains Interpro domain(s) IPR001164 Arf GTPase activating protein " 1 8 4 18 opLeV0100001353 sgn|U226335 TTCTCCTGACAGTGGACAAGATGTTCTTCCTCATTATCTGCGAGCTTCCACTGGTTCTTGCCATGACTTT Experimental SGN-U583944 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157345748|emb|CAO15046.1| (e_value=1e-57) unnamed; (*ATH) AT5G39380.1 (e_value=8e-31) | Symbol: None | calmodulin-binding protein-related, has weak similarity to calmodulin-binding proteins | chr5:15775945-15777914 REVERSE | Aliases: MUL8.6, MUL8_6; Solyc02g088580.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:45211594-45213711 transcript_region:SL2.40ch02:45211594..45213711+ functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SDA2_ARATH); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant " 1 4 4 18 opLeV0100001354 sgn|U221196 TGCTGAAGAGGTAGATGATGGAGCTTTGAAGCAGGAGAATGGTGGGGGCGGACTTACAGATTTTGATGCC Experimental SGN-U569927 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|157343004|emb|CAO65716.1| (e_value=0) unnamed; (*ATH) AT1G18560.1 (e_value=2e-35) Symbol: None | hAT dimerisation domain-containing protein / BED zinc finger domain-containing protein / transposase-related, weak similarity to Tam3-transposase (Antirrhinum majus) GI:16064; contains Pfam profiles PF02892: BED zinc finger, PF05699: ... ; (*SWP) sp|P08770|TRA1_MAIZE (e_value=9e-74) Putative AC transposase OS=Zea mays; Solyc12g009640.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2917443-2920250 transcript_region:SL2.40ch12:2917443..2920250+ go_terms:GO:0003677,GO:0046983 functional_description:"HAT family dimerisation domain containing protein expressed (AHRD V1 **-- Q6AVI0_ORYSJ); contains Interpro domain(s) IPR008906 HAT dimerisation " 1 8 8 18 opLeV0100001355 sgn|U216108 CTAGGGCATCAAAGATTATGGCTCAGTGTAGTGCCTTGCTAAAGAAATGAGCATCGGGTATCGGTACCTG Experimental SGN-U564640 Tomato 200607#2 [51 ESTs aligned] (*GB) gi|3122572|sp|Q43644|NDUS1_SOLTU (e_value=0) NADH-ubiquinone; (*ATH) AT5G37510.2 (e_value=0) | Symbol: None | NADH-ubiquinone dehydrogenase, mitochondrial, putative, similar to NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial from Solanum tuberosum (SP:Q43644) | chr5:14914640-14917877 FORWARD | Aliases: None; (*SWP) sp|Q43644|NDUS1_SOLTU (e_value=0) NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Solanum tuberosum; Solyc11g011470.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4520459-4526103 transcript_region:SL2.40ch11:4520459..4526103- go_terms:GO:0016020,GO:0051536,GO:0016491,GO:0055114 functional_description:"NADH-ubiquinone oxidoreductase subunit (AHRD V1 ***- B9T118_RICCO); contains Interpro domain(s) IPR010228 NADH:ubiquinone oxidoreductase, subunit G " 1 4 8 18 opLeV0100001356 sgn|U224006 GTCACCCACCTAACTGTCAAAATGGGCTGACCCAACCCAACTCAACCCATCCTCAAATCAGCCAAAATAA Experimental SGN-U569089 Tomato 200607#2 [5 ESTs aligned] \N \N 3 8 20 19 opLeV0100001357 sgn|U212666 TGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGA Experimental SGN-U578677 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157345539|emb|CAO14837.1| (e_value=3e-79) unnamed; (*ATH) AT2G04690.1 (e_value=3e-64) Symbol: None | cellular repressor of E1A-stimulated genes (CREG) family, contains 1 transmembrane domain; similar to CREG2 (GI:24371079) (Homo sapiens) and (GI:24371081) (Mus musculus); similar to cellular repressor of E1A-stimulated genes CREG (GI:... ; (*SWP) sp|Q5ZJ73|CREG1_CHICK (e_value=1e-27) Protein CREG1 OS=Gallus gallus GN=CREG1; Solyc02g087250.2.1 genomic_reference:SL2.40ch02 gene_region:44273725-44285278 transcript_region:SL2.40ch02:44273725..44285278- go_terms:GO:0010181,GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK63_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain " 3 4 20 19 opLeV0100001358 sgn|U227319 GTGTCAAATCAGAAGCTGAAACACTCACATCCCAATCCCAATTCTTGAAAGCTCTCCAAGTCGCTGTCAC Experimental SGN-U566631 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|119640027|gb|ABL85455.1| (e_value=6e-13) actin; (*SWP) sp|O96626|ARPC5_DICDI (e_value=4e-12) Actin-related protein 2/3 complex subunit 5 OS=Dictyostelium discoideum GN=arcE; \N \N 3 8 4 18 opLeV0100001359 sgn|U219202 CGACCTCTGGGCCCTGCATTCGACGTAGAGGTGCTAGAGCCGTCTCAAGAATTTGTGTTGAAGTACAATC Experimental SGN-U562996 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157360794|emb|CAO70395.1| (e_value=3e-89) unnamed; (*ATH) AT4G00755.1 (e_value=8e-78) | Symbol: None | F-box family protein, ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 | chr4:325085-326970 FORWARD | Aliases: None; Solyc01g091710.2.1 genomic_reference:SL2.40ch01 gene_region:77067916-77072922 transcript_region:SL2.40ch01:77067916..77072922+ functional_description:"F-box family protein (AHRD V1 ***- B9IC68_POPTR)" 3 4 4 18 opLeV0100001360 sgn|U220675 CAAATCTGTTAACTGGCTTGAAACAGCTGAAGAAATAGACGACCTCTTCCTCGGTGATGCAGAGGTTTGG Experimental SGN-U564489 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|118489032|gb|ABK96323.1| (e_value=1e-62) unknown; (*ATH) AT5G44520.1 (e_value=9e-55) | Symbol: None | ribose 5-phosphate isomerase-related, low similarity to SP:P47968 Ribose 5-phosphate isomerase (EC 5.3.1.6) (Phosphoriboisomerase) {Mus musculus} | chr5:17951514-17953751 REVERSE | Aliases: MFC16.20, MFC16_20; (*SWP) sp|Q7VA25|RPIA_PROMA (e_value=9e-12) Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus GN=rpiA; Solyc02g069620.2.1 genomic_reference:SL2.40ch02 gene_region:34035676-34038248 transcript_region:SL2.40ch02:34035676..34038248- go_terms:GO:0009052 functional_description:"Ribose 5-phosphate isomerase-like (AHRD V1 ***- Q2LC22_9ASTR); contains Interpro domain(s) IPR004788 Ribose 5-phosphate isomerase " 3 8 8 18 opLeV0100001361 sgn|U228540 TGGAAGCCAATCCTCCGAAGAAGTAGAATGTTTGGTCCTAGGTGCATCTGATAAGAGGGATATTGAACTC Experimental SGN-U562856 Tomato 200607#2 [2 ESTs aligned] Solyc10g077000.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59252848-59257424 transcript_region:SL2.40ch10:59252848..59257424+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein expressed (AHRD V1 *-*- Q2QY95_ORYSJ)" 3 4 8 18 opLeV0100001362 sgn|U234346 GAGGAGTTGGGGCACATGGGTGTCCGAAATTCGCGAACCAAACCAGAAAT Experimental \N \N \N \N 1 7 18 19 opLeV0100001363 sgn|U221567 TTATTAACCGAGAAGTCCTCGAGGGTCAATAGTGCACTGTTCATAACTCAGTGGATGATAGAACCGCCCC Experimental SGN-U575202 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147815751|emb|CAN63733.1| (e_value=1e-92) hypothetical; (*ATH) AT5G16000.1 (e_value=2e-84) | Symbol: None | leucine-rich repeat family protein / protein kinase family protein, contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain | chr5:5224146-5227291 FORWARD | Aliases: F1N13.140, F1N13_140; (*SWP) sp|Q94F62|BAK1_ARATH (e_value=3e-55) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1; Solyc05g010400.2.1 genomic_reference:SL2.40ch05 gene_region:4633321-4637619 transcript_region:SL2.40ch05:4633321..4637619- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK" 1 3 18 19 opLeV0100001364 sgn|U225065 GTCAAGATCGAAGAAGGGCTGAGTCGTAAATTAACAAACTCGGTAGCGTGTGAAGGTAGGGATCGTTTGG Experimental SGN-U583815 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|110644844|gb|ABD72964.1| (e_value=0) GRAS9; (*ATH) AT5G52510.1 (e_value=7e-110) | Symbol: None | scarecrow-like transcription factor 8 (SCL8) | chr5:21324275-21326528 FORWARD | Aliases: T4M5.2, T4M5_2; (*SWP) sp|Q8GVE1|CIGR2_ORYSJ (e_value=1e-58) Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2; Solyc06g036170.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:22327586-22329382 transcript_region:SL2.40ch06:22327586..22329382+ go_terms:GO:0003700 functional_description:"Scarecrow-like 1 transcription factor (Fragment) (AHRD V1 *--* B1PPU0_PINPS); contains Interpro domain(s) IPR005202 GRAS transcription factor " 1 7 2 18 opLeV0100001365 sgn|U225198 ATCACAACTGTAACGACTAGCTGGTTGGACAAACATCATGTTGTTTTCGGCAAGGTGCTGTCTGGGATGG Experimental SGN-U581295 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|56694218|gb|AAW22880.1| (e_value=1e-109) putative cyclophilin [Lycopersicon esculentum]; (*ATH) AT2G29960.1 (e_value=1e-75) | Symbol: None | peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP5) / rotamase, identical to cyclophilin (Arabidopsis thaliana) gi:2443755:gb:AAB71401 | chr2:12776134-12777656 REVERSE | Aliases: F23F1.12, F23F1_12; (*SWP) sp|Q8LDP4|CP19D_ARATH (e_value=9e-75) Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4; Solyc06g051650.2.1 genomic_reference:SL2.40ch06 gene_region:31680154-31684846 transcript_region:SL2.40ch06:31680154..31684846+ go_terms:GO:0051082,GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase B (AHRD V1 **** PPIB_DICDI); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type " 1 3 2 18 opLeV0100001366 sgn|U226933 GTCAACTTGCCCAAATATGCTGGACCTGAGGCACGATATTGTCCTGCACGAGTTTATGAGTACATCCCGG Experimental SGN-U570375 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157327973|emb|CAO16939.1| (e_value=8e-76) unnamed; (*ATH) AT2G43400.1 (e_value=7e-70) | Symbol: None | electron transfer flavoprotein-ubiquinone oxidoreductase family protein, contains Pfam profile: PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase | chr2:18028329-18032272 FORWARD | Aliases: T1O24.14; (*SWP) sp|Q6UPE1|ETFD_RAT (e_value=2e-46) Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Rattus norvegicus GN=Etfdh; Solyc12g021170.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:14507668-14535411 transcript_region:SL2.40ch12:14507668..14535411+ go_terms:GO:0055114 functional_description:"Electron-transfer flavoprotein ubiquinone oxidoreductase (AHRD V1 ***- D7LK13_ARALY); contains Interpro domain(s) IPR007859 Electron transfer flavoprotein-ubiquinone oxidoreductase " 1 7 6 18 opLeV0100001367 sgn|U231862 CGTGGTAAATGGTACTGCAAGTATTGTGAAAGCATGTTACAGAGGGAGAAGTTTGCGGAGCGCAATACGA Experimental SGN-U565116 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157356770|emb|CAO62972.1| (e_value=4e-90) unnamed; (*ATH) AT2G36720.1 (e_value=2e-81) | Symbol: None | PHD finger transcription factor, putative | chr2:15400150-15406497 FORWARD | Aliases: F13K3.12, F13K3_12; (*SWP) sp|Q6PDQ2|CHD4_MOUSE (e_value=4e-14) Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4; Solyc10g083800.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62877321-62887944 transcript_region:SL2.40ch10:62877321..62887944+ go_terms:GO:0008270 functional_description:"Chromodomain helicase DNA binding protein 3 (Fragment) (AHRD V1 *--- B1AR16_MOUSE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger " 1 3 6 18 opLeV0100001368 sgn|U215214 AGCTCGTCACTCTGGCAACTCATATCTCCCCCGTCTACTGATCCCCAGCCAGGAAAAGAAAAAAATACCC Experimental SGN-U585211 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|113205195|gb|AAT39937.2| (e_value=1e-36) Putative; (*ATH) AT1G26850.2 (e_value=6e-28) Symbol: None | dehydration-responsive family protein, similar to early-responsive to dehydration stress ERD3 protein (Arabidopsis thaliana) GI:15320410; contains Pfam profile PF03141: Putative methyltransferase | chr1:9300860-9304125 REVERSE | Alias... ; \N \N 3 7 18 19 opLeV0100001369 sgn|U219792 AATCATATGGCCATTATACCAAGGTTTCTGGATCAATGTCCGATGGTGGTATCAGTGGGGAGCGAGTGCA Experimental SGN-U566294 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157342554|emb|CAO65266.1| (e_value=7e-57) unnamed; (*ATH) AT5G09380.1 (e_value=1e-46) Symbol: None | DNA-directed RNA polymerase III RPC4 family protein, low similarity to SP:P25441 DNA-directed RNA polymerase III 47 kDa polypeptide (EC 2.7.7.6) (C53) (RNA polymerase C subunit 4) {Saccharomyces cerevisiae}; contains Pfam profile PF05... ; Solyc05g025650.2.1 genomic_reference:SL2.40ch05 gene_region:35397597-35400053 transcript_region:SL2.40ch05:35397597..35400053- go_terms:GO:0005666 functional_description:"DNA-directed RNA polymerase III subunit RPC4 (AHRD V1 ***- B5X342_SALSA); contains Interpro domain(s) IPR007811 RNA polymerase III Rpc4 " 3 3 18 19 opLeV0100001370 sgn|U229170 AGGGATTACGTCGCAGAGTATGGGGAGGGGAATTGGAGTTCTGTCCACAGGCGAACAGGACTCGCTCGCT Experimental SGN-U584149 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|121281634|gb|ABM53274.1| (e_value=9e-56) GAMYB-like2; (*ATH) AT3G11440.1 (e_value=1e-45) | Symbol: None | myb family transcription factor (MYB65), contains Pfam profile: PF00249 myb-like DNA-binding domain | chr3:3602100-3605110 FORWARD | Aliases: F24K9.11; (*SWP) sp|Q0JIC2|GAM1_ORYSJ (e_value=6e-46) Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1; Solyc11g072060.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52421669-52427762 transcript_region:SL2.40ch11:52421669..52427762+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *--- Q9FR97_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor " 3 7 2 18 opLeV0100001371 sgn|U229898 TCCAGACACTTTCGTTGCTTGCGTGATGCAATCTGCGATCAGATTCGAGCATCACGAAGAAGTCTTGGAG Experimental SGN-U579380 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|187940732|gb|ACD39467.1| (e_value=0) BEL30; (*ATH) AT2G16400.1 (e_value=4e-98) | Symbol: None | homeodomain-containing protein | chr2:7108412-7110973 REVERSE | Aliases: F16F14.10, F16F14_10; (*SWP) sp|Q9SIW1|BLH7_ARATH (e_value=4e-97) BEL1-like homeodomain protein 7 OS=Arabidopsis thaliana GN=BLH7; Solyc01g109980.2.1 genomic_reference:SL2.40ch01 gene_region:88557367-88561809 transcript_region:SL2.40ch01:88557367..88561809- go_terms:GO:0003677 functional_description:"BEL1-like homeodomain protein 6 (AHRD V1 *--- BLH6_ARATH); contains Interpro domain(s) IPR006563 POX " 3 3 2 18 opLeV0100001372 sgn|U216804 GGGTAAGGTTCAGATGCTGGATAAGAGGTTGATAGGCCTTGAGGATGTAGTGAAGGACCTCAGAAACATG Experimental SGN-U571494 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|147846477|emb|CAN81663.1| (e_value=2e-57) hypothetical; (*ATH) AT3G58110.1 (e_value=6e-46) | Symbol: None | expressed protein | chr3:21527722-21530106 FORWARD | Aliases: F9D24.20; Solyc07g053440.2.1 genomic_reference:SL2.40ch07 gene_region:59211525-59214134 transcript_region:SL2.40ch07:59211525..59214134+ functional_description:"Os06g0538200 protein (Fragment) (AHRD V1 *-*- Q0DBR2_ORYSJ)" 3 7 6 18 opLeV0100001373 sgn|U212682 TCCCTAACGAATGGTCCTACTAAAGCATTACGAAAAACAGGGTATGGGAAGGCTCCTAGTGTTCTGGTGC Experimental SGN-U577438 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|7211427|gb|AAF40306.1|AF156667_1 (e_value=9e-85) RNA; (*ATH) AT5G62190.1 (e_value=1e-81) Symbol: None | DEAD box RNA helicase (PRH75), nearly identical to RNA helicase (Arabidopsis thaliana) GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain | chr5:24997494-25001199 REVERSE ... ; (*SWP) sp|Q41382|RH7_SPIOL (e_value=1e-83) DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7; Solyc06g035450.2.1 genomic_reference:SL2.40ch06 gene_region:21040469-21044581 transcript_region:SL2.40ch06:21040469..21044581+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q6L724_HORVU); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal " 3 3 6 18 opLeV0100001374 sgn|U221762 AGTGGAGTTACAGTAGTGGGATCAGATGCTCCATCAGATTACCATGTGGCAGCAAGGACCACTGAGAATC Experimental SGN-U574372 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|147794107|emb|CAN62363.1| (e_value=2e-88) hypothetical; (*ATH) AT4G12080.1 (e_value=6e-74) | Symbol: None | DNA-binding family protein, contains a AT hook motif (DNA binding motifs with a preference for A/T rich regions), Pfam:PF02178 | chr4:7239213-7241488 FORWARD | Aliases: F16J13.150, F16J13_150; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=9e-12) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC; Solyc08g079630.2.1 genomic_reference:SL2.40ch08 gene_region:60275702-60280510 transcript_region:SL2.40ch08:60275702..60280510- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 ***- Q8VYJ2_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 " 1 7 20 19 opLeV0100001375 sgn|U223364 CCGACACTTCCCACAGAATAGATCAAAGGATTCTGAGGCAAACATGGAGGCGTCCGATGGAGACCATGAG Experimental SGN-U586324 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|18423503|ref|NP_568792.1| (e_value=9e-157) ATP-dependent Clp protease ATP-binding subunit ClpX1 [Arabidopsis thaliana]; (*ATH) AT5G53350.1 (e_value=6e-159) | Symbol: None | ATP-dependent Clp protease ATP-binding subunit ClpX1 (CLPX), identical to CLP protease regulatory subunit CLPX GI:2674203 from (Arabidopsis thaliana) | chr5:21661124-21664933 FORWARD | Aliases: K19E1.15, K19E1_15; (*SWP) sp|A1U1Q2|CLPX_MARAV (e_value=7e-93) ATP-dependent Clp protease ATP-binding subunit clpX OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=clpX; Solyc03g083250.2.1 genomic_reference:SL2.40ch03 gene_region:46645114-46653685 transcript_region:SL2.40ch03:46645114..46653685+ go_terms:GO:0004176 functional_description:"ATP-dependent Clp protease ATP-binding subunit clpX (AHRD V1 **** B6SSC5_MAIZE); contains Interpro domain(s) IPR004487 ClpX, ATPase regulatory subunit " 1 3 20 19 opLeV0100001376 sgn|U240934 TTGTGCTGAAATCTATTTGTCTGCACGAATCAGCCCAGAATTTCAACGTTTCAAAATTACCAAACGACCC Experimental SGN-U604832 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157354067|emb|CAO46634.1| (e_value=1e-25) unnamed; (*ATH) AT2G18193.1 (e_value=5e-25) | Symbol: None | AAA-type ATPase family protein, contains Pfam profile: ATPase family PF00004 | chr2:7924587-7926359 REVERSE | Aliases: None; Solyc02g084910.2.1 genomic_reference:SL2.40ch02 gene_region:42543739-42545282 transcript_region:SL2.40ch02:42543739..42545282- go_terms:GO:0016887 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core " 1 7 4 18 opLeV0100001377 sgn|U215747 TCATGCGCAGCTCATTGTTTCAGAGGTCCCCTTGGAGGTGAAGTAGTAGTCCACACTGCTCCACGTGTCC Experimental SGN-U586327 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157341990|emb|CAO63446.1| (e_value=3e-11) unnamed; Solyc08g077330.2.1 genomic_reference:SL2.40ch08 gene_region:58389533-58391046 transcript_region:SL2.40ch08:58389533..58391046- go_terms:GO:0005576 functional_description:"Expansin-like protein (AHRD V1 ***- A2ICD7_CUNLA); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like " 1 3 4 18 opLeV0100001378 sgn|U226081 GCTGGTACCTCTTTATGGCCGTGGAACATCATCCCCAGAATCTGAATCCAAGAAGTCTCAACGGGATGTT Experimental SGN-U570201 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|22795037|gb|AAN05420.1| (e_value=1e-36) putative RING protein [Populus x canescens]; (*ATH) AT4G27470.1 (e_value=1e-35) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr4:13735005-13736524 FORWARD | Aliases: F27G19.70, F27G19_70; (*SWP) sp|Q5M807|RNF5_RAT (e_value=4e-19) E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5; Solyc07g063200.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:62961364-62962080 transcript_region:SL2.40ch07:62961364..62962080+ go_terms:GO:0004842 functional_description:"RING finger protein 5 (AHRD V1 *-*- B6TF06_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type " 1 7 8 18 opLeV0100001379 sgn|U226962 TGCGACATGAACTGATTGGTGCTGTTCTTATGCACTATGCTACTAAATGGATCCCGGGGCTAATTAAAGA Experimental SGN-U572146 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157357764|emb|CAO64758.1| (e_value=4e-85) unnamed; (*ATH) AT5G64330.1 (e_value=5e-70) | Symbol: None | non-phototropic hypocotyl 3 (NPH3), identical to non-phototropic hypocotyl 3 (Arabidopsis thaliana) gi:6224712:gb:AAF05914, PMID:10542152 | chr5:25744563-25748328 FORWARD | Aliases: MSJ1.17, MSJ1_17; (*SWP) sp|Q9FMF5|RPT3_ARATH (e_value=4e-69) Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3; Solyc10g047530.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:36521301-36523609 transcript_region:SL2.40ch10:36521301..36523609+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 " 3 7 20 19 opLeV0100001380 sgn|U222954 GTTAGGACTCTTGGATCAAGAGAGTTTTTGCGTTACTACCGACAGAAACTGAGGCCTACACGGACCAATG Experimental SGN-U576745 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157339398|emb|CAO43939.1| (e_value=1e-142) unnamed; (*ATH) AT4G31420.1 (e_value=4e-125) | Symbol: None | zinc finger (C2H2 type) family protein, contains Pfam profile: PF00096 zinc finger, C2H2 type | chr4:15245822-15247930 REVERSE | Aliases: F3L17.9; (*SWP) sp|O59811|YJVF_SCHPO (e_value=1e-23) Zinc finger protein C550.15c OS=Schizosaccharomyces pombe GN=SPCC550.15c; Solyc12g096450.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63710205-63713019 transcript_region:SL2.40ch12:63710205..63713019+ go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MB67_ARALY); contains Interpro domain(s) IPR003604 Zinc finger, U1-type " 3 3 20 19 opLeV0100001381 sgn|U218488 AGAACAGTTCATACCTTGGAAATGATGGATTACGAGGATTGCCACCCTCAAGAGATTGTGGCCGTGATGA Experimental SGN-U582499 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|4235641|gb|AAD13301.1| (e_value=0) NL0D [Lycopersicon esculentum]; (*ATH) AT2G33060.1 (e_value=8e-68) Symbol: None | leucine-rich repeat family protein, contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; contains similarity to Hcr2-0B (Lycopersicon esculentum) gi:3894387:gb:AAC78593 | chr2:14032560-14035269 FORWARD | Aliases: F25... ; (*SWP) sp|O22476|BRI1_ARATH (e_value=1e-34) Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1; Solyc01g005760.2.1 genomic_reference:SL2.40ch01 gene_region:496465-499371 transcript_region:SL2.40ch01:496465..499371+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP" 3 7 4 18 opLeV0100001382 sgn|U222164 TGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCTGTTTCTGCAGTGGGTCATGC Experimental SGN-U565462 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157340178|emb|CAO45855.1| (e_value=1e-58) unnamed; (*ATH) AT5G06220.1 (e_value=2e-30) | Symbol: None | expressed protein | chr5:1880193-1885638 FORWARD | Aliases: MBL20.10, MBL20_10; Solyc06g066550.2.1 genomic_reference:SL2.40ch06 gene_region:38192184-38198696 transcript_region:SL2.40ch06:38192184..38198696+ functional_description:"MRS7 family protein (AHRD V1 *--- B6QVZ9_PENMQ); contains Interpro domain(s) IPR011685 LETM1-like " 3 3 4 18 opLeV0100001383 sgn|U222591 GGCTGTGGAGCTCCGTTACACACATCGGAAGTGGATGCTCCAGGTTATGTTGACCAGGAGACATACGAGT Experimental SGN-U588911 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|159885612|dbj|BAF93184.1| (e_value=8e-52) nitric; (*ATH) AT3G47450.2 (e_value=2e-48) | Symbol: None | expressed protein | chr3:17494053-17497332 REVERSE | Aliases: None; (*SWP) sp|Q66GP9|NOS1_ARATH (e_value=2e-47) Nitric oxide synthase 1 OS=Arabidopsis thaliana GN=NOS1; Solyc03g093240.2.1 genomic_reference:SL2.40ch03 gene_region:47874481-47880681 transcript_region:SL2.40ch03:47874481..47880681+ go_terms:GO:0003924 functional_description:"GTP-binding protein YqeH (AHRD V1 **-- C6VPQ3_LACPJ); contains Interpro domain(s) IPR002917 GTP-binding protein, HSR1-related " 3 3 8 18 opLeV0100001384 sgn|U219177 GACCAGATGATATGTGGTACTGTCCTCGCTGCAAGGAGCATAGACAAGCCTCCAAGAAGTTAGATCTATG Experimental SGN-U562940 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157356700|emb|CAO62895.1| (e_value=5e-112) unnamed; (*ATH) AT4G10570.1 (e_value=3e-96) Symbol: None | ubiquitin carboxyl-terminal hydrolase family protein, similar to ubiquitin-specific protease UBP5 (Arabidopsis thaliana) GI:6648604; contains Pfam profile PF00443: Ubiquitin carboxyl-terminal hydrolase | chr4:6523251-6528169 REVERSE |... ; (*SWP) sp|Q9ZSB5|UBP10_ARATH (e_value=3e-95) Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana GN=UBP10; Solyc08g083300.2.1 genomic_reference:SL2.40ch08 gene_region:62970183-62979608 transcript_region:SL2.40ch08:62970183..62979608+ go_terms:GO:0004843,GO:0004197 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9RYW0_RICCO); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 " 2 8 18 19 opLeV0100001385 sgn|U217878 GAACTTGTACAAATTGCTTCCAATGGGTACCAAGAATGAGAAAAATGCTATAGTCCAAACAGCAACAAGG Experimental SGN-U571646 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|114145390|dbj|BAF30984.1| (e_value=2e-78) basic; (*ATH) AT5G43650.1 (e_value=1e-30) | Symbol: None | basic helix-loop-helix (bHLH) family protein, similar to unknown protein (pir::T04030) | chr5:17550422-17552023 REVERSE | Aliases: K9D7.15, K9D7_15; Solyc09g083360.2.1 genomic_reference:SL2.40ch09 gene_region:64419034-64421479 transcript_region:SL2.40ch09:64419034..64421479+ go_terms:GO:0003700 functional_description:"Basic helix-loop-helix protein (AHRD V1 ***- Q0KK48_TOBAC); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding " 2 4 18 19 opLeV0100001386 sgn|U221548 AAGCACAGTCCCTTATTCGACAGCTACTATACAACCCCAAACTGCAGGCTGCATGTCCAGTTCCGTTTGA Experimental SGN-U575466 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157350367|emb|CAO40347.1| (e_value=2e-109) unnamed; (*ATH) AT1G72280.1 (e_value=8e-111) | Symbol: None | endoplasmic reticulum oxidoreductin 1 (ERO1) family protein, contains Pfam domain, PF04137: Endoplasmic Reticulum Oxidoreductin 1 (ERO1) | chr1:27215513-27218168 REVERSE | Aliases: T9N14.18, T9N14_18; (*SWP) sp|Q9C7S7|ERO1_ARATH (e_value=8e-110) Endoplasmic oxidoreductin-1 OS=Arabidopsis thaliana GN=AERO1; Solyc07g056390.2.1 genomic_reference:SL2.40ch07 gene_region:61572433-61577873 transcript_region:SL2.40ch07:61572433..61577873- go_terms:GO:0015035 functional_description:"Endoplasmic oxidoreductin-1 (AHRD V1 **-- B6T402_MAIZE); contains Interpro domain(s) IPR007266 Endoplasmic reticulum oxidoreductin 1 " 2 8 2 18 opLeV0100001387 sgn|U216362 CCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGGTG Experimental SGN-U564174 Tomato 200607#2 [30 ESTs aligned] (*GB) gi|18403216|ref|NP_565761.1| (e_value=5e-69) expressed protein [Arabidopsis thaliana]; (*ATH) AT2G33220.1 (e_value=4e-71) | Symbol: None | expressed protein | chr2:14085948-14087213 FORWARD | Aliases: F25I18.4, F25I18_4; (*SWP) sp|Q9P0J0|NDUAD_HUMAN (e_value=5e-25) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens GN=NDUFA13; Solyc09g091170.2.1 genomic_reference:SL2.40ch09 gene_region:65842513-65846890 transcript_region:SL2.40ch09:65842513..65846890- go_terms:GO:0008137 functional_description:"NADH dehydrogenase 1 alpha subcomplex subunit 13 (AHRD V1 **** B5X9S0_SALSA); contains Interpro domain(s) IPR009346 GRIM-19 " 2 4 2 18 opLeV0100001388 sgn|U216700 AGCCTTAATCTGGGCAGTTTTGTCAGACATCTGCTATGGGAAGAAGAATCGACCTTCAATCGCGTAGCCA Experimental SGN-U592817 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|133711805|gb|ABO36623.1| (e_value=7e-72) putative; (*ATH) AT1G07360.1 (e_value=3e-62) Symbol: None | zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein, similar to SP:O59800 Cell cycle control protein cwf5 {Schizosaccharomyces pombe}, RNA Binding Protein 47 (Nicotiana plumbaginifolia) GI:9663769; ... ; (*SWP) sp|Q4V7D7|RBM22_RAT (e_value=1e-42) Pre-mRNA-splicing factor RBM22 OS=Rattus norvegicus GN=Rbm22; \N \N 2 8 6 18 opLeV0100001389 sgn|U213206 TGGTGACGCAGGTGTTCCTATGGATGATGATGCTCCACCATCTGGTGGTAGCAGTGCAGGACCTAAGATT Experimental SGN-U578504 Tomato 200607#2 [44 ESTs aligned] (*GB) gi|123613|sp|P24629|HSP71_SOLLC (e_value=0) RecName:; (*ATH) AT5G02500.1 (e_value=0) | Symbol: None | heat shock cognate 70 kDa protein 1 (HSC70-1) (HSP70-1), identical to SP:P22953 Heat shock cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis thaliana} | chr5:553743-556437 REVERSE | Aliases: T22P11.90, T22P11_90; (*SWP) sp|P24629|HSP71_SOLLC (e_value=0) Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I; Solyc06g076020.2.1 genomic_reference:SL2.40ch06 gene_region:43582389-43585486 transcript_region:SL2.40ch06:43582389..43585486- go_terms:GO:0051082,GO:0005524 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 " 2 4 6 18 opLeV0100001390 sgn|U225938 GCGGAGCTCCACTCTCACGAGTCTGCTCGGATAATATACATGAGGACATGATTGACTGTAGTATTAACAA Experimental SGN-U581687 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|110433339|gb|ABG74351.1| (e_value=3e-72) ethylene-inducing; Solyc12g005620.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:329993-331726 transcript_region:SL2.40ch12:329993..331726+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP" 4 8 18 19 opLeV0100001391 sgn|U216575 CCCAGTCCATAAATGCTATTTATGATGAGGTGATAAAGAGGGAAGGTGGTCTTGGTATGGACCTGGAGCG Experimental SGN-U564338 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|157327491|emb|CAO15472.1| (e_value=1e-123) unnamed; (*ATH) AT3G49000.1 (e_value=9e-106) | Symbol: None | RNA polymerase III subunit RPC82 family protein, contains Pfam profile: PF05645 RNA polymerase III subunit RPC82 | chr3:18173693-18176968 FORWARD | Aliases: T2J13.160; (*SWP) sp|Q55FJ5|RPC3_DICDI (e_value=7e-11) DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum GN=polr3c; Solyc06g036000.2.1 genomic_reference:SL2.40ch06 gene_region:22052164-22063575 transcript_region:SL2.40ch06:22052164..22063575+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase III subunit C (AHRD V1 ***- B0WS61_CULQU); contains Interpro domain(s) IPR008806 RNA polymerase III Rpc82, C -terminal " 4 4 18 19 opLeV0100001392 sgn|U221957 TGATTTTCATCACTACACAACCTTCTCTTCTTGGTCCCATTCTCAACCGTTGTTGTCTTCCCCTGTTTCA Experimental SGN-U568618 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|25052685|gb|AAM43804.1| (e_value=5e-82) heat stress transcription factor HSFA9 [Helianthus annuus]; (*ATH) AT2G26150.1 (e_value=2e-63) | Symbol: None | heat shock transcription factor family protein, contains Pfam profile: PF00447 HSF-type DNA-binding domain | chr2:11142760-11144474 FORWARD | Aliases: T19L18.4, T19L18_4; (*SWP) sp|P41152|HSF30_SOLPE (e_value=5e-64) Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30; Solyc07g040680.2.1 genomic_reference:SL2.40ch07 gene_region:46702761-46704429 transcript_region:SL2.40ch07:46702761..46704429+ go_terms:GO:0005515,GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 **** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding " 4 8 2 18 opLeV0100001393 sgn|U216762 TTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTA Experimental SGN-U565583 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|157335168|emb|CAO60998.1| (e_value=1e-131) unnamed; (*ATH) AT1G75710.1 (e_value=4e-118) | Symbol: None | zinc finger (C2H2 type) family protein, contains zinc finger, C2H2 type, domain, PROSITE:PS00028 | chr1:28432367-28434910 FORWARD | Aliases: F10A5.10, F10A5_10; Solyc04g081370.2.1 genomic_reference:SL2.40ch04 gene_region:62972909-62976305 transcript_region:SL2.40ch04:62972909..62976305+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *-** D6MKQ1_9ASPA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type " 4 4 2 18 opLeV0100001394 sgn|U221150 TAAAGAGGCCGTCACCCGGACTGAAGGCAATGTGATGAAAACTGCAGAAAGACGCTCCTTAGTGTCCATT Experimental SGN-U565803 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157340136|emb|CAO45813.1| (e_value=1e-180) unnamed; (*ATH) AT1G51940.1 (e_value=6e-161) | Symbol: None | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein, contains protein kinases ATP-binding region signature, PROSITE:PS00107 | chr1:19299598-19302787 REVERSE | Aliases: T14L22.13, T14L22_13; (*SWP) sp|Q9ZWC8|BRL1_ARATH (e_value=1e-49) Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1; Solyc03g121050.2.1 genomic_reference:SL2.40ch03 gene_region:63329506-63336332 transcript_region:SL2.40ch03:63329506..63336332- go_terms:GO:0006468,GO:0016998 functional_description:"Receptor-like kinase (AHRD V1 *-*- C0SW32_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 4 8 6 18 opLeV0100001395 sgn|U241023 GGGAGGGGGGGTAAAACTTCCGGTTCCCTAGGGCCCCCAAGGGGGTTTTCCCCCTGGGGGGAAAAAAAAG Experimental SGN-U602747 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|116784675|gb|ABK23434.1| (e_value=6e-11) unknown; (*ATH) AT4G16520.2 (e_value=6e-13) | Symbol: None | autophagy 8f (APG8f), identical to autophagy 8f (Arabidopsis thaliana) GI:19912161; contains Pfam profile PF02991: Microtubule associated protein 1A/1B, light chain 3 | chr4:9306708-9308465 REVERSE | Aliases: None; (*SWP) sp|Q8VYK7|ATG8F_ARATH (e_value=5e-12) Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F; \N \N 4 4 6 18 opLeV0100001396 sgn|U225118 AATTATGATATTCACGGGAATAAAACCGGGTCGTGGGCCCCACCTAAAACGGAGCGAAACGGGTTTTGGG Experimental SGN-U566317 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157353906|emb|CAO46441.1| (e_value=8e-75) unnamed; (*ATH) AT5G09760.1 (e_value=6e-65) | Symbol: None | pectinesterase family protein, contains Pfam profile: PF01095 pectinesterase | chr5:3032376-3034544 FORWARD | Aliases: F17I14.50, F17I14_50; (*SWP) sp|O04887|PME2_CITSI (e_value=8e-16) Pectinesterase-2 OS=Citrus sinensis GN=PECS-2.1; Solyc11g005750.1.1 evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:591151-592949 transcript_region:SL2.40ch11:591151..592949- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase family protein (AHRD V1 ***- D7MRW1_ARALY); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic " 2 8 20 19 opLeV0100001397 sgn|U218664 GTCCGAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTG Experimental SGN-U571285 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157343181|emb|CAO66670.1| (e_value=4e-127) unnamed; (*ATH) AT5G57940.2 (e_value=3e-116) Symbol: None | cyclic nucleotide-regulated ion channel / cyclic nucleotide-gated channel (CNGC5), identical to cyclic nucleotide and calmodulin-regulated ion channel (cngc5) GI:4581205 from (Arabidopsis thaliana) | chr5:23473814-23477839 FORWARD | A... ; (*SWP) sp|Q8RWS9|CNGC5_ARATH (e_value=3e-115) Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5; Solyc12g010010.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3144264-3150904 transcript_region:SL2.40ch12:3144264..3150904+ go_terms:GO:0016020 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding " 2 4 20 19 opLeV0100001398 sgn|U241840 AGTGTCGAAGTTTTCTCGTCTTCGAGTACCCGTACTCGTCTCCGTCTTCGCTTCGTCGCATTATCTTTTG Experimental SGN-U583527 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|56694214|gb|AAW22876.1| (e_value=6e-175) unknown; (*ATH) AT5G05660.1 (e_value=1e-109) | Symbol: None | zinc finger (NF-X1 type) family protein, contains PF01422: NF-X1 type zinc finger | chr5:1690862-1695474 REVERSE | Aliases: MJJ3.6, MJJ3_6; (*SWP) sp|A0JMY5|NFXL1_XENLA (e_value=1e-34) NF-X1-type zinc finger protein NFXL1 OS=Xenopus laevis GN=nfxl1; Solyc06g051570.2.1 genomic_reference:SL2.40ch06 gene_region:31568208-31585418 transcript_region:SL2.40ch06:31568208..31585418- go_terms:GO:0005515 functional_description:"NF-X1 type zinc finger family protein (AHRD V1 **-- D7KKM7_ARALY); contains Interpro domain(s) IPR000967 Zinc finger, NF-X1-type " 2 8 4 18 opLeV0100001399 sgn|U240428 GCCTTTATCACTTAATCAGGCCCAACCAAATCACCCACATGATCCTCCGGGTTTTTGGCGAACACTGACG Experimental SGN-U604297 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|217323620|gb|ACK38177.1| (e_value=4e-11) hydrogen; \N \N 2 4 4 18 opLeV0100001400 sgn|U221217 GTCCGCTAGGGCTCGACGGACGTTTAGTATGAACGTGATCATCGTGGTTATGGTTGAAAAATTAATCGCG Experimental SGN-U573298 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|147832282|emb|CAN73280.1| (e_value=9e-26) hypothetical; (*ATH) AT2G46150.1 (e_value=3e-23) | Symbol: None | expressed protein, and genefinder | chr2:18968476-18969449 FORWARD | Aliases: T3F17.20; Solyc08g008150.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch08 gene_region:2624053-2624325 transcript_region:SL2.40ch08:2624053..2624325+ functional_description:"Plant cell wall protein SlTFR88 (AHRD V1 ***- Q19QU4_SOLLC)" 2 8 8 18 opLeV0100001401 sgn|U217696 GTTGTAGAGATGCGAATGTTGAGGGAAAAGAGGTAGAGAAGGGACAGGGAAGACTTCCATCCAGTTTCAG Experimental SGN-U587868 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|707001|gb|AAB33256.1| (e_value=5e-50) Clostridium pasteurianum ferredoxin homolog [Solanum tuberosum]; (*ATH) AT3G27570.1 (e_value=1e-43) | Symbol: None | expressed protein | chr3:10215233-10217973 REVERSE | Aliases: MMJ24.12; Solyc02g067840.2.1 genomic_reference:SL2.40ch02 gene_region:32527853-32531873 transcript_region:SL2.40ch02:32527853..32531873+ functional_description:"Sucrase/ferredoxin domain protein (AHRD V1 *--- A1CK27_ASPCL); contains Interpro domain(s) IPR009737 Sucraseferredoxin-like " 2 4 8 18 opLeV0100001402 sgn|U214642 TCCTCAAGATCCATGCTGCTGGGATTGCCAAACATGGTGAAATTGATTATGAGGCTGCTGTTAAGCTCGC Experimental SGN-U566414 Tomato 200607#2 [47 ESTs aligned] (*GB) gi|24745880|dbj|BAC23035.1| (e_value=0) 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum]; (*ATH) AT1G45000.1 (e_value=0) | Symbol: None | 26S proteasome regulatory complex subunit p42D, putative, similar to 26S proteasome regulatory complex subunit p42D (Drosophila melanogaster) gi:6434958:gb:AAF08391 | chr1:17011584-17014326 FORWARD | Aliases: F27F5.8, F27F5_8; (*SWP) sp|P62335|PRS10_SPETR (e_value=7e-173) 26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6; Solyc01g109940.2.1 genomic_reference:SL2.40ch01 gene_region:88527503-88532712 transcript_region:SL2.40ch01:88527503..88532712- go_terms:GO:0005524,GO:0017111,GO:0005737 functional_description:"26S protease regulatory subunit (AHRD V1 ***- C0NAB1_AJECG); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 " 4 8 20 19 opLeV0100001403 sgn|U235401 TCCATCTTACTTAGCTTTGAAAGAGAAGACAGAACTTGTTCCATGTCAGGTCTATCTTCAGGATCAGGAG Experimental SGN-U597978 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147857736|emb|CAN78669.1| (e_value=6e-16) hypothetical; (*ATH) AT5G46330.1 (e_value=4e-12) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative | chr5:18808963-18812773 FORWARD | Aliases: MPL12.13, MPL12_13; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=3e-11) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2; Solyc02g070890.2.1 genomic_reference:SL2.40ch02 gene_region:35066723-35070830 transcript_region:SL2.40ch02:35066723..35070830+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK" 4 4 20 19 opLeV0100001404 sgn|U214348 CAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAGCCTCGGCAGCCAGAGT Experimental SGN-U578424 Tomato 200607#2 [30 ESTs aligned] (*GB) gi|63028790|gb|AAY27262.1| (e_value=4e-116) putative alfin-like transcription factor [Solanum tuberosum]; (*ATH) AT1G14510.1 (e_value=1e-93) | Symbol: None | PHD finger family protein, contains Pfam domain, PF00628: PHD-finger | chr1:4961882-4964420 REVERSE | Aliases: F14L17.29, F14L17_29; (*SWP) sp|O81488|Y5621_ARATH (e_value=4e-83) PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210; Solyc01g102750.2.1 genomic_reference:SL2.40ch01 gene_region:83245131-83250588 transcript_region:SL2.40ch01:83245131..83250588+ go_terms:GO:0003677,GO:0035064 functional_description:"PHD finger family protein (AHRD V1 **-- D7KBK9_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger " 4 8 4 18 opLeV0100001405 sgn|U215961 CAAATCCGATGCTAGAAACTTCTGTACTTTCCATATGCTTTACAACCACTTCTGTGCACTACCATATACC Experimental SGN-U564667 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157360020|emb|CAO68768.1| (e_value=4e-35) unnamed; (*ATH) AT1G66760.2 (e_value=9e-34) | Symbol: None | MATE efflux family protein, contains TIGRfam profile: TIGR00797: MATE efflux family protein, Pfam profile PF01554: Uncharacterized membrane protein family | chr1:24905641-24908066 FORWARD | Aliases: None; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=3e-20) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12; Solyc02g063270.2.1 genomic_reference:SL2.40ch02 gene_region:29907935-29911147 transcript_region:SL2.40ch02:29907935..29911147- go_terms:GO:0015559 functional_description:"Multidrug and toxin extrusion protein 1 (AHRD V1 **-- S47A1_MOUSE); contains Interpro domain(s) IPR015521 MATE family transporter related protein " 4 4 4 18 opLeV0100001406 sgn|U222450 CGACAACAATGGTCAGCCTTTAGAGTTCAGCTCTGGAGAAGGGCTTGTTCCTCAAGGATTTGAAATGTCC Experimental SGN-U583859 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157346044|emb|CAO15741.1| (e_value=0) unnamed; (*ATH) AT3G54010.1 (e_value=0) | Symbol: None | peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative / pasticcino 1-D (PAS1-D), nearly identical to pasticcino 1-D (Arabidopsis thaliana) GI:3080740 | chr3:20011867-20016161 FORWARD | Aliases: F5K20.310; (*SWP) sp|Q7DMA9|PAS1_ARATH (e_value=0) Peptidyl-prolyl isomerase PASTICCINO1 OS=Arabidopsis thaliana GN=PAS1; Solyc11g011420.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4485102-4493711 transcript_region:SL2.40ch11:4485102..4493711+ go_terms:GO:0006457,GO:0005488 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- Q86M29_BRUMA); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type " 4 8 8 18 opLeV0100001407 sgn|U216660 AGCAATTTGGACAGGATGATCTCATGAGTGCCCTTCTGAAGCAGCAAGAAAGTGTCGGACAAGTTGAAAC Experimental SGN-U581777 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|33330870|gb|AAQ10678.1| (e_value=8e-87) type-B response regulator [Catharanthus roseus]; (*ATH) AT3G16857.2 (e_value=2e-27) Symbol: None | two-component responsive regulator family protein / response regulator family protein, contains Pfam profile: PF00072 response regulator receiver domain; similar to ARR1 protein GB:BAA74528 from (Arabidopsis thaliana) (Plant Cell Phys... ; (*SWP) sp|Q940D0|ARR1_ARATH (e_value=2e-26) Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1; Solyc05g054390.2.1 genomic_reference:SL2.40ch05 gene_region:63460779-63466205 transcript_region:SL2.40ch05:63460779..63466205+ go_terms:GO:0005515,GO:0003700 functional_description:"Response regulator 8 (AHRD V1 *-*- Q9AV93_MAIZE); contains Interpro domain(s) IPR017053 Response regulator, plant B-type " 4 4 8 18 opLeV0100001408 sgn|U216720 TGCTCTCTCAAAATATAGCCCATTAACTTTTGGGGTTCAGTCCATGGGCCTTGTTATGGCCCACTGTTAT Experimental SGN-U577593 Tomato 200607#2 [29 ESTs aligned] (*GB) gi|73624747|gb|AAZ79231.1| (e_value=0) cellulose synthase-like protein CslG [Nicotiana tabacum]; (*ATH) AT4G23990.1 (e_value=0) Symbol: None | cellulose synthase family protein, similar to cellulose synthase catalytic subunit from Arabidopsis thaliana (gi:5230423), cellulose synthase-5 from Zea mays (gi:9622882) | chr4:12456534-12460763 FORWARD | Aliases: T32A16.160, T32A16_... ; (*SWP) sp|Q0WVN5|CSLG3_ARATH (e_value=0) Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3; Solyc08g082670.2.1 genomic_reference:SL2.40ch08 gene_region:62547362-62552364 transcript_region:SL2.40ch08:62547362..62552364+ go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B9IMB3_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase " 2 7 18 19 opLeV0100001409 sgn|U219537 AACACAAAGTACGTAGTCTCTTGATCCCGTTGGAGTTCAGCTTGGGACATTATGGGAGGTATTGTCATGC Experimental SGN-U571509 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|147781159|emb|CAN67382.1| (e_value=4e-72) hypothetical; (*ATH) AT5G35570.1 (e_value=9e-73) | Symbol: None | expressed protein, similar to axi 1 (Nicotiana tabacum) GI:559921; contains Pfam profile PF03138: Plant protein family | chr5:13766941-13770688 REVERSE | Aliases: K2K18.1, K2K18_1; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=3e-14) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910; Solyc07g041750.2.1 genomic_reference:SL2.40ch07 gene_region:51404606-51417208 transcript_region:SL2.40ch07:51404606..51417208- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant " 2 3 18 19 opLeV0100001410 sgn|U222573 AATGCGTGATCAAAGATTGGAAACTTCAGGGGCATCAACATCAGAAGCATCCGTGACGTTACCAGCCAGT Experimental SGN-U575338 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|147771544|emb|CAN75896.1| (e_value=9e-146) hypothetical; (*ATH) AT1G60160.1 (e_value=4e-130) Symbol: None | potassium transporter family protein, similar to potassium transporter HAK2p (Mesembryanthemum crystallinum) gi:14091471:gb:AAK53759; KUP/HAK/KT Transporter family member, PMID:11500563; contains Pfam profile PF02705: K+ potassium tra... ; (*SWP) sp|O80739|POT12_ARATH (e_value=4e-129) Putative potassium transporter 12 OS=Arabidopsis thaliana GN=POT12; Solyc04g025990.2.1 genomic_reference:SL2.40ch04 gene_region:23432889-23439874 transcript_region:SL2.40ch04:23432889..23439874- go_terms:GO:0009674 functional_description:"Potassium transporter family protein (AHRD V1 **** D7KXB7_ARALY); contains Interpro domain(s) IPR003855 K+ potassium transporter " 2 7 2 18 opLeV0100001411 sgn|U223436 AACTGGTATACATAGCTGCCATTCATGGTGCTTCATCAAGGAGATAAATGAGCTTCGAAGATAAATCGTA Experimental SGN-U565295 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|15218953|ref|NP_174245.1| (e_value=2e-57) plasma membrane associated protein -related [Arabidopsis thaliana]; (*ATH) AT1G29520.1 (e_value=1e-59) | Symbol: None | AWPM-19-like membrane family protein, contains Pfam profile: PF05512 AWPM-19-like family | chr1:10323641-10324729 FORWARD | Aliases: F15D2.10, F15D2_10; Solyc02g071310.2.1 genomic_reference:SL2.40ch02 gene_region:35368618-35369907 transcript_region:SL2.40ch02:35368618..35369907+ functional_description:"Plasma membrane associated protein (AHRD V1 ***- B4FLA8_MAIZE); contains Interpro domain(s) IPR008390 AWPM-19-like " 2 3 2 18 opLeV0100001412 sgn|U224995 CTCTTCTCTCAACGGTAGTCGCCGTCAACGCCTTTGGTGTCCCTTCGGGGATATCCAATCTACAAAAAAA Experimental SGN-U583371 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|22326653|ref|NP_196408.2| (e_value=6e-73) leucine rich repeat protein family [Arabidopsis thaliana]; (*ATH) AT5G07910.1 (e_value=4e-75) | Symbol: None | leucine-rich repeat family protein, contains leucine rich repeat (LRR) domains, Pfam:PF00560 | chr5:2521570-2524202 REVERSE | Aliases: F13G24.110; (*SWP) sp|Q80VQ1|LRRC1_MOUSE (e_value=1e-17) Leucine-rich repeat-containing protein 1 OS=Mus musculus GN=Lrrc1; Solyc03g115410.2.1 genomic_reference:SL2.40ch03 gene_region:59186913-59192387 transcript_region:SL2.40ch03:59186913..59192387+ go_terms:GO:0019903 functional_description:"Lrr, resistance protein fragment" 2 7 6 18 opLeV0100001413 sgn|U216937 GGACGCTGAATAGGTCTGCTCGTTTTAACGATCAGAAGCCTGTGTCTGTTGTACCCAAGAAGGTTACACA Experimental SGN-U579597 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|157355874|emb|CAO49731.1| (e_value=1e-132) unnamed; (*ATH) AT5G51570.1 (e_value=4e-132) | Symbol: None | band 7 family protein, similar to hypersensitive-induced response protein (Zea mays) GI:7716468; contains Pfam profile PF01145: SPFH domain / Band 7 family | chr5:20966652-20968723 FORWARD | Aliases: K17N15.12, K17N15_12; (*SWP) sp|P16148|PLZ12_LUPPO (e_value=3e-80) Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12; Solyc03g007190.2.1 genomic_reference:SL2.40ch03 gene_region:1764428-1769612 transcript_region:SL2.40ch03:1764428..1769612- go_terms:GO:0005515 functional_description:"SPFH domain / Band 7 family protein (AHRD V1 *--- Q6L4B0_SOLDE); contains Interpro domain(s) IPR001107 Band 7 protein " 2 3 6 18 opLeV0100001414 sgn|U217876 GCACGTTCAGCAAAAGAGCTGTGGTATTCCAATCCTCAGGTTTAGCTGGACTAAGAGTAGGATATGGAGC Experimental \N \N \N \N 4 7 18 19 opLeV0100001415 sgn|U235488 CTGGAAGATGCAACATCCATCTCTATCTGCTTTGGAGCTGAAAATACACAGCTATGTACACTGGTTCAGT Experimental SGN-U570530 Tomato 200607#2 [3 ESTs aligned] \N \N 4 7 2 18 opLeV0100001416 sgn|U232132 AGTGTCAACAATATCGACACCCCTGACGGCTTGGTCATCCACCCCTTTTTTTTCACATCCACCCTTAGAA Experimental SGN-U593667 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|75254748|sp|Q6DUX3|TCTP_SOLLC (e_value=1e-49) RecName:; (*ATH) AT3G16640.1 (e_value=6e-34) | Symbol: None | translationally controlled tumor family protein, similar to translationally controlled tumor protein GB:AAD10032 from (Hevea brasiliensis) | chr3:5669379-5670823 REVERSE | Aliases: MGL6.19; (*SWP) sp|Q6DUX3|TCTP_SOLLC (e_value=9e-51) Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP; \N \N 4 3 2 18 opLeV0100001417 sgn|U234150 GTTAACCCGCCCCGTTCCTTCCCCCTTCAAGCTTTCATAGGACAAATTTCCTTCCCCCCTCCAAAAATTT Experimental SGN-U589612 Tomato 200607#2 [1 ESTs aligned] \N \N 4 7 6 18 opLeV0100001418 sgn|U215786 ATACACCTCAACAGAGCATTCCGCGGCAGGCTGATGACCGTTTCTTCACATGGGCAGCAGTTGGACTTAC Experimental SGN-U569768 Tomato 200607#2 [40 ESTs aligned] (*GB) gi|157353012|emb|CAO44902.1| (e_value=1e-117) unnamed; (*ATH) AT3G17000.1 (e_value=1e-97) Symbol: None | ubiquitin-conjugating enzyme, putative, similar to Non-Canonical UBiquitin Conjugating Enzyme 1 (NCUBE1) from (Gallus gallus) GI:7362937, (Mus musculus) GI:7363050, (Homo sapiens) GI:7362973; contains Pfam profile PF00179: Ubiquitin-c... ; (*SWP) sp|Q9LSP7|UBC32_ARATH (e_value=1e-96) Ubiquitin carrier protein E2 32 OS=Arabidopsis thaliana GN=UBC32; Solyc12g099310.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64838370-64841676 transcript_region:SL2.40ch12:64838370..64841676- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme 31 (AHRD V1 ***- D7L699_ARALY); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 " 4 3 6 18 opLeV0100001419 sgn|U227687 TTTGACCGAGGATATTCGCTCCTACACTTGATCAAGATGTTTGGTCTCACTTTCCTGTCGAGTAGTTGTG Experimental SGN-U580769 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157355353|emb|CAO48740.1| (e_value=4e-51) unnamed; (*ATH) AT3G49080.1 (e_value=4e-50) | Symbol: None | ribosomal protein S9 family protein, contains Pfam profile PF00380: ribosomal protein S9 | chr3:18205146-18207702 REVERSE | Aliases: T2J13.80, AT3G49090; (*SWP) sp|A8I7Z9|RS9_AZOC5 (e_value=2e-29) 30S ribosomal protein S9 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rpsI; \N \N 2 7 20 19 opLeV0100001420 sgn|U222276 TTACTTACCAATGATCTGGGTACACATGCACGGAGGCAAAATCAACGGTTGAAAGTATAGAGTTGCGGAC Experimental SGN-U576196 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157344365|emb|CAO69748.1| (e_value=1e-44) unnamed; (*ATH) AT2G20680.1 (e_value=2e-46) Symbol: None | glycosyl hydrolase family 5 protein / cellulase family protein, similar to (1-4)-beta-mannan endohydrolase (Coffea arabica) GI:10178872; contains Pfam profile PF00150: Cellulase (glycosyl hydrolase family 5) | chr2:8927548-8930254 FOR... ; (*SWP) sp|Q7Y223|MAN2_ARATH (e_value=2e-45) Mannan endo-1,4-beta-mannosidase 2 OS=Arabidopsis thaliana GN=MAN2; Solyc07g053920.2.1 genomic_reference:SL2.40ch07 gene_region:59657150-59661028 transcript_region:SL2.40ch07:59657150..59661028- go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 " 2 3 20 19 opLeV0100001421 sgn|U223812 AAATCCCGGAAAGACGAATCATTTAATTCTCCACATGATCTGCCTTGAGAAATGGCACCCTACTAACAGA Experimental SGN-U566932 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|87241322|gb|ABD33180.1| (e_value=1e-62) TGF-beta; (*ATH) AT1G27040.2 (e_value=8e-40) | Symbol: None | nitrate transporter, putative, contains Pfam profile: PF00854 POT family; similar to nitrate transporter (NTL1) GI:3377517 (Arabidopsis thaliana) | chr1:9386771-9389901 REVERSE | Aliases: None; (*SWP) sp|Q9FNL8|PTR3B_ARATH (e_value=2e-23) Putative peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B; \N \N 2 7 4 18 opLeV0100001422 sgn|U214678 AAAGTTGTCCGCATATGACTTGATCTTTAACAATGGTGTGTGTCGTTTCTTCACCGTATATTCCCAACCA Experimental SGN-U591154 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147858131|emb|CAN83933.1| (e_value=6e-60) hypothetical; (*ATH) AT5G67590.1 (e_value=5e-48) Symbol: None | NADH-ubiquinone oxidoreductase-related, contains weak similarity to NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-21KD) (CI-21KD). (Swiss-Prot:P25711) (Neurospora crassa);... ; (*SWP) sp|Q5XIF3|NDUS4_RAT (e_value=2e-18) NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Rattus norvegicus GN=Ndufs4; Solyc02g092270.2.1 genomic_reference:SL2.40ch02 gene_region:47982328-47987024 transcript_region:SL2.40ch02:47982328..47987024- go_terms:GO:0005743 functional_description:"NADH dehydrogenase (AHRD V1 -**- NDUS4_RAT); contains Interpro domain(s) IPR006885 ETC complex I subunit conserved region " 2 3 4 18 opLeV0100001423 sgn|U229989 CACAGGTGCCCCCCACTACATCAACGGATTAAACATGGTAGTGAGGGTGAAACTGTTTTATCGGAAACTG Experimental SGN-U566376 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|15237155|ref|NP_200635.1| (e_value=0) ABC transporter family protein [Arabidopsis thaliana]; (*ATH) AT5G58270.1 (e_value=0) Symbol: None | mitochondrial half-ABC transporter (STA1), identical to half-molecule ABC transporter ATM3 GI:9964121 from (Arabidopsis thaliana); almost identical to mitochondrial half-ABC transporter STA1 GI:9187883 from (Arabidopsis thaliana); ide... ; (*SWP) sp|O75027|ABCB7_HUMAN (e_value=5e-129) ATP-binding cassette sub-family B member 7, mitochondrial OS=Homo sapiens GN=ABCB7; Solyc09g055350.2.1 genomic_reference:SL2.40ch09 gene_region:35636998-35672737 transcript_region:SL2.40ch09:35636998..35672737+ go_terms:GO:0015232 functional_description:"ABC transporter ATP-binding/permease protein (AHRD V1 **** A3SXQ3_9RHOB); contains Interpro domain(s) IPR003439 ABC transporter-like " 2 3 8 18 opLeV0100001424 sgn|U215948 TCTACTAGGTTGTACAGAAAAGAGGCCAGGGCAATAGACTTTCATCCAGTAACATCCATACCTTCGAGTT Experimental SGN-U580025 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|166234051|sp|A5A7I7|CDPK4_SOLTU (e_value=0) Calcium-dependent; (*ATH) AT2G17290.1 (e_value=0) Symbol: None | calcium-dependent protein kinase isoform 6 (CPK6), identical to calmodulin-domain protein kinase CDPK isoform 6 (Arabidopsis thaliana) gi:1399275:gb:AAB03246; contains protein kinase domain, Pfam:PF00069; contains EF hand domain (calc... ; (*SWP) sp|A5A7I7|CDPK4_SOLTU (e_value=0) Calcium-dependent protein kinases 4 OS=Solanum tuberosum GN=CDPK4; \N \N 4 7 20 19 opLeV0100001425 sgn|U233608 CATACACAGTGGGATCCTACGAGTGAAGTCAAAAAAAGGTAAAGTGTATGCTGAAAGGCAAAAAGGTTGC Experimental SGN-U589818 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157330988|emb|CAO62563.1| (e_value=2e-17) unnamed; (*ATH) AT5G44316.1 (e_value=1e-17) | Symbol: None | ATP-binding-cassette transporter, putative, similar to ATP-binding-cassette transporter (ABC1) described in PMID:11156608 | chr5:17870138-17871748 FORWARD | Aliases: None; (*SWP) sp|Q9ZS97|NAP1_ARATH (e_value=2e-16) Protein NAP1, chloroplastic OS=Arabidopsis thaliana GN=NAP1; Solyc03g031700.2.1 genomic_reference:SL2.40ch03 gene_region:8445318-8448659 transcript_region:SL2.40ch03:8445318..8448659- go_terms:GO:0005515 functional_description:"ABC transporter FeS assembly protein SufB (AHRD V1 ***- C7JBP7_ACEP3); contains Interpro domain(s) IPR010231 SUF system FeS cluster assembly, SufB " 4 3 20 19 opLeV0100001426 sgn|U238472 CGGTACCCGGGGTCTAGTAACCCCGACTAAATCCGGACTCATACAAAAGTCCAACATTAAAAAGTAAAGT Experimental SGN-U598697 Tomato 200607#2 [1 ESTs aligned] \N \N 4 7 4 18 opLeV0100001427 sgn|U216096 GAATGTAGAACACATTTGCAGTGTTGTGCTTCAAGTCTCTTTATGTAGTGGCTGTTGCTGTTGTCAACCC Experimental SGN-U588168 Tomato 200607#2 [1 ESTs aligned] \N \N 4 3 4 18 opLeV0100001428 sgn|U222993 GACGAACTCAAAACTCATCTCGTGGCTGTGGAGCGTGGACTAGAGACACATCATGATGCTATTTAAAAGG Experimental SGN-U573124 Tomato 200607#2 [5 ESTs aligned] \N \N 4 7 8 18 opLeV0100001429 sgn|U235795 GCCTTGCTTAACATACTTGTAAGGGCTAGTCTAGTTATGAGAGGTTACTTGCCTGTGGCATCCCTTTGAG Experimental SGN-U574477 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|4928460|gb|AAD33596.1|AF133127_1 (e_value=3e-23) thioredoxin; (*ATH) AT1G11530.1 (e_value=2e-20) Symbol: None | Encodes a single cysteine active site thioredoxin-related protein, similar to thioredoxin H-type from Arabidopsis thaliana SP:P29448, Nicotiana tabacum SP:Q07090; contains Pfam profile: PF00085 Thioredoxin; | chr1:3874437-3875484 FORW... ; (*SWP) sp|Q8LDI5|TRXL4_ARATH (e_value=2e-19) Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530; \N \N 4 3 8 18 opLeV0100001430 sgn|U215191 ATGGTGATGCCTGGTCATCGTGATTCCAACCTGCAGAAGGAACTAAATCGTTACATACCTACTGCAGCTG Experimental SGN-U579118 Tomato 200607#2 [53 ESTs aligned] (*GB) gi|15226261|ref|NP_180972.1| (e_value=0) protein transport protein SEC61 alpha subunit -related [Arabidopsis thaliana]; (*ATH) AT2G34250.1 (e_value=0) | Symbol: None | protein transport protein sec61, putative, similar to PfSec61 (Plasmodium falciparum) GI:3057044; contains Pfam profile PF00344: eubacterial secY protein | chr2:14469168-14471941 FORWARD | Aliases: F13P17.9, F13P17_9; (*SWP) sp|Q54XK2|SC61A_DICDI (e_value=0) Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a; Solyc02g072130.2.1 genomic_reference:SL2.40ch02 gene_region:35987256-35990574 transcript_region:SL2.40ch02:35987256..35990574+ go_terms:GO:0015450 functional_description:"Protein transport protein SEC61 alpha subunit (AHRD V1 ***- D3B1K5_POLPA); contains Interpro domain(s) IPR002208 SecY protein " 1 4 9 18 opLeV0100001431 sgn|U235806 TATGTGGATCTTCATGATCATGTAGCCATCCAAATTGTTCCATGAAAGGATTCACTAAAGTTTTAGGTGG Experimental SGN-U564292 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|159895657|gb|ABX10439.1| (e_value=4e-33) 3-ketoacyl-CoA; (*ATH) AT1G07720.1 (e_value=1e-31) | Symbol: None | beta-ketoacyl-CoA synthase family protein, similar to GB:AAC99312 from (Arabidopsis thaliana) (Plant J. (1999) In press) | chr1:2390652-2392450 REVERSE | Aliases: F24B9.18, F24B9_18; (*SWP) sp|Q9LQP8|KCS3_ARATH (e_value=1e-30) 3-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana GN=KCS3; Solyc11g072980.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53207039-53208433 transcript_region:SL2.40ch11:53207039..53208433- go_terms:GO:0008610,GO:0016020,GO:0008152 functional_description:"3-ketoacyl-CoA synthase 6 (AHRD V1 ***- A9XU47_GOSHI); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase " 1 2 9 18 opLeV0100001432 sgn|U213467 TGATCCAGTTCTTCAAATAGGGTATCATCAGTATATGGCTGCAGATGGAGCCTCAGGGTCAAGGAACATG Experimental SGN-U592387 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|78191472|gb|ABB29957.1| (e_value=3e-31) unknown [Solanum tuberosum]; (*ATH) AT1G33120.1 (e_value=2e-31) | Symbol: None | 60S ribosomal protein L9 (RPL90B), similar to RIBOSOMAL PROTEIN L9 GB:P49209 from (Arabidopsis thaliana) | chr1:12010886-12012504 FORWARD | Aliases: T9L6.2, T9L6_2; (*SWP) sp|P49210|RL9_ORYSJ (e_value=7e-31) 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9; Solyc01g093960.2.1 genomic_reference:SL2.40ch01 gene_region:77295932-77301086 transcript_region:SL2.40ch01:77295932..77301086- go_terms:GO:0005515 functional_description:"MADS box transcription factor (AHRD V1 ***- Q2NNC0_ELAGV); contains Interpro domain(s) IPR002487 Transcription factor, K-box " 1 8 13 18 opLeV0100001433 sgn|U219448 ACTCCAAAGAATCTTGTCCAATCTTATGGCTCTTGGGCACTCATCACTGGCTCAACAGATGGAATTGGAA Experimental SGN-U586596 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|62956020|gb|AAY23355.1| (e_value=8e-71) 3-ketoacyl-CoA; (*ATH) AT1G67730.1 (e_value=3e-63) | Symbol: None | b-keto acyl reductase, putative (GLOSSY8), similar to b-keto acyl reductase GI:2586127 from (Hordeum vulgare) | chr1:25395123-25397273 FORWARD | Aliases: F12A21.14, F12A21_14; (*SWP) sp|O70503|DHB12_MOUSE (e_value=3e-31) Estradiol 17-beta-dehydrogenase 12 OS=Mus musculus GN=Hsd17b12; Solyc05g014150.2.1 genomic_reference:SL2.40ch05 gene_region:7870276-7871196 transcript_region:SL2.40ch05:7870276..7871196- go_terms:GO:0045703 functional_description:"Dehydrogenase/reductase SDR family member 7 (AHRD V1 **-- DHRS7_MOUSE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase " 1 4 13 18 opLeV0100001434 sgn|U219525 TACAAGCCCAAATTTGAAGCGTGATAATAGAGTGACACTGCTTGCATAAAATCCGTCACAAGACAGTGTT Experimental SGN-U563981 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|5734585|emb|CAB52796.1| (e_value=3e-55) putative internal rotenone-insensitive NADH dehydrogenase [Solanum tuberosum]; (*ATH) AT1G07180.1 (e_value=5e-47) Symbol: ATNDI1 | Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway i... ; (*SWP) sp|O14121|NDH1_SCHPO (e_value=2e-14) Probable NADH-ubiquinone oxidoreductase C3A11.07, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC3A11.07; Solyc06g007160.2.1 genomic_reference:SL2.40ch06 gene_region:1218194-1222072 transcript_region:SL2.40ch06:1218194..1222072- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** Q38A31_9TRYP); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase " 1 8 17 18 opLeV0100001435 sgn|U215655 CAGGTCTGGCAGGTTGGATCAGCGGTGACGGATGGAAGGCCCGCGATACATAAGTTTGAACCTGAAAATT Experimental SGN-U578234 Tomato 200607#2 [35 ESTs aligned] (*GB) gi|2894118|emb|CAA05999.1| (e_value=2e-55) hypothetical protein [Solanum tuberosum]; (*ATH) AT3G25290.1 (e_value=9e-40) | Symbol: None | auxin-responsive family protein, similar to auxin-induced protein AIR12 GI:11357190 (Arabidopsis thaliana) | chr3:9210174-9211836 FORWARD | Aliases: MJL12.25; (*SWP) sp|Q94BT2|AIR12_ARATH (e_value=3e-37) Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12; Solyc09g056390.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:44524229-44524456 transcript_region:SL2.40ch09:44524229..44524456+ functional_description:"Unknown Protein (AHRD V1)" 1 6 17 18 opLeV0100001436 sgn|U233607 CCTAAATCCCAAATTCCATATATGGACCCCCATTTTTACAAACCCCCCAAACGTAAATTAAAAACCCCAA Experimental SGN-U587872 Tomato 200607#2 [1 ESTs aligned] Solyc01g088660.2.1 genomic_reference:SL2.40ch01 gene_region:75185596-75186764 transcript_region:SL2.40ch01:75185596..75186764+ functional_description:"Os04g0585900 protein (Fragment) (AHRD V1 *-*- Q0JAP2_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 " 1 4 17 18 opLeV0100001437 sgn|U213006 CCAATCAGGCATTCAATCCCGATAAAAATTGTGCCAAGCTCAAAATCCTGCTTGATTAACATGGCCCCTT Experimental SGN-U578879 Tomato 200607#2 [52 ESTs aligned] (*GB) gi|311907|emb|CAA51011.1| (e_value=3e-91) ras-related GTP-binding protein [Nicotiana tabacum]; (*ATH) AT1G02130.1 (e_value=2e-90) | Symbol: None | Ras-related protein (ARA-5) / small GTP-binding protein, putative, identical to Ras-related protein ARA-5 SP:P28188 from (Arabidopsis thaliana) | chr1:400045-401854 REVERSE | Aliases: T7I23.6, T7I23_6; (*SWP) sp|P28188|ARA5_ARATH (e_value=2e-89) Ras-related protein ARA-5 OS=Arabidopsis thaliana GN=ARA-5; \N \N 1 2 17 18 opLeV0100001438 sgn|U230691 CTTGTAGAGCTGACAAGCAAAGGATGCGGGTGCCTCCTTGTTATTGATGAGGAGTTTCATCTGCTAGGCA Experimental SGN-U582436 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|118483855|gb|ABK93818.1| (e_value=2e-57) unknown; (*ATH) AT3G54690.1 (e_value=2e-57) Symbol: None | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein, similar to SP:Q47334 Polysialic acid capsule expression protein kpsF {Escherichia coli}; contains Pfam profiles PF01380: sugar isomerase (SIS) domain, PF... ; (*SWP) sp|Q9Z826|Y526_CHLPN (e_value=2e-18) Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547 OS=Chlamydia pneumoniae GN=CPn_0526; Solyc03g098140.2.1 genomic_reference:SL2.40ch03 gene_region:53914820-53918720 transcript_region:SL2.40ch03:53914820..53918720- go_terms:GO:0005975 functional_description:"Arabinose-5-phosphate isomerase (AHRD V1 ***- B0TYU5_FRAP2); contains Interpro domain(s) IPR004800 KpsF/GutQ " 3 8 9 18 opLeV0100001439 sgn|U234786 CTGCATATCTGCCCGACTATGGACCCATTCCCTTAATTAGAGCAGTTCAT Experimental SGN-U565875 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157358607|emb|CAO66283.1| (e_value=0) unnamed; (*ATH) AT2G33630.1 (e_value=0) Symbol: None | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, contains Pfam profile PF01073 3-beta hydroxysteroid dehydrogenase/isomerase domain; similar to NAD(P)-dependent cholesterol dehydrogenase (Nocardia sp.) (GI:216809) | chr2:... ; (*SWP) sp|A8DZE7|YP22A_DANRE (e_value=2e-75) 3-beta-HSD family protein HSPC105 homolog A OS=Danio rerio GN=si:ch211-79l17.4; Solyc04g082750.2.1 genomic_reference:SL2.40ch04 gene_region:63907580-63910780 transcript_region:SL2.40ch04:63907580..63910780+ go_terms:GO:0000252 functional_description:"3-beta hydroxysteroid dehydrogenase/isomerase family protein (AHRD V1 **** D7LGC3_ARALY); contains Interpro domain(s) IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase " 3 6 9 18 opLeV0100001440 sgn|U212676 GTTGTGATAAATTGGCAGTCACAGTTTTTGTAATCTGTTATCATTAGTGCTAACTTTCCTGCTTCTGCGC Experimental SGN-U577438 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|7211427|gb|AAF40306.1|AF156667_1 (e_value=9e-85) RNA; (*ATH) AT5G62190.1 (e_value=1e-81) Symbol: None | DEAD box RNA helicase (PRH75), nearly identical to RNA helicase (Arabidopsis thaliana) GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain | chr5:24997494-25001199 REVERSE ... ; (*SWP) sp|Q41382|RH7_SPIOL (e_value=1e-83) DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7; \N \N 3 4 9 18 opLeV0100001441 sgn|U220617 ACTGGACACGAGGGACAATAAAGAAAGATCAGGGGGCCGTGGCGGTGGTGCCGGCAAAGATAAAATTGAT Experimental SGN-U570045 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157349393|emb|CAO24539.1| (e_value=3e-101) unnamed; (*ATH) AT2G45330.2 (e_value=5e-92) Symbol: None | similar to tRNA 2'phosphotransferase, putative [Arabidopsis thaliana] (TAIR:At5g23600.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF90715.1); contains InterPro domain Phosphotransferase KptA/Tpt1 (InterPro:IPR... ; (*SWP) sp|Q5EAR5|TRPT1_DANRE (e_value=1e-32) tRNA 2'-phosphotransferase 1 OS=Danio rerio GN=trpt1; Solyc01g091210.2.1 genomic_reference:SL2.40ch01 gene_region:76652503-76658043 transcript_region:SL2.40ch01:76652503..76658043- go_terms:GO:0006388 functional_description:"tRNA 2&apos-phosphotransferase (AHRD V1 ***- B6K5D9_SCHJY); contains Interpro domain(s) IPR002745 Phosphotransferase KptA/Tpt1 " 3 2 9 18 opLeV0100001442 sgn|U214303 TCGTACACTCTCAAATGCTCCGGCAGGGTTATAGTATCAGGAACAATTCC Experimental SGN-U577990 Tomato 200607#2 [53 ESTs aligned] (*GB) gi|1684830|gb|AAB96796.1| (e_value=1e-86) ethylene-responsive late embryogenesis-like protein [Lycopersicon esculentum]; (*ATH) AT1G01470.1 (e_value=6e-46) Symbol: None | late embryogenesis abundant protein, putative / LEA protein, putative, similar to SP:P46518 Late embryogenesis abundant protein Lea14-A {Gossypium hirsutum}; contains Pfam profile PF03168: Late embryogenesis abundant protein | chr1:17... ; (*SWP) sp|P46519|LEA14_SOYBN (e_value=6e-53) Desiccation protectant protein Lea14 homolog OS=Glycine max; Solyc01g095140.2.1 genomic_reference:SL2.40ch01 gene_region:78283227-78284039 transcript_region:SL2.40ch01:78283227..78284039+ go_terms:GO:0009269 functional_description:"Late embryogenesis abundant protein (Fragment) (AHRD V1 **-- B7TGG5_PINSY); contains Interpro domain(s) IPR013990 Water Stress and Hypersensitive response " 3 8 13 18 opLeV0100001443 sgn|U215595 TCCTCGCCCCATGATGCATTAGGCAATCCTTTGTTGCTATCAAGGTCTGGAAAGAGTTGAGCGCAAGCCC Experimental SGN-U579216 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|157357096|emb|CAO63584.1| (e_value=3e-97) unnamed; (*ATH) AT3G14450.1 (e_value=2e-89) | Symbol: CID9 | RNA-binding protein, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies). Contains PAM PABC binding domain. | chr3:4849795-4851608 FORWARD | Aliases: MOA2.5, CID9; Solyc07g056590.2.1 genomic_reference:SL2.40ch07 gene_region:61723085-61730619 transcript_region:SL2.40ch07:61723085..61730619+ go_terms:GO:0005515,GO:0003723 functional_description:"Polyadenylate-binding protein 1 (AHRD V1 *-** B0WMK0_CULQU); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait " 3 6 13 18 opLeV0100001444 sgn|U214541 TGGTGTTGCCATGGTGGATTGGGGGAAAAATGGAATTGGACTTTGTAGGAGGAGAAATGGGCATTTACTT Experimental \N \N \N \N 3 4 13 18 opLeV0100001445 sgn|U216860 GACAAATTTATGGCCACCAACAGATATCTGAGTGCCTCACGTCCTCTAGATGGGAGAGTACTTCAAGAGA Experimental SGN-U568783 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157359549|emb|CAO67750.1| (e_value=4e-28) unnamed; (*ATH) AT2G12462.1 (e_value=3e-27) | Symbol: None | similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g80520.1); similar to OSJNBa0033G05.11 [Oryza sativa (japonica cultivar-group)] (GB:XP_474088.1) | chr2:5057665-5058667 REVERSE | Aliases: None; Solyc07g007350.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:2091112-2091879 transcript_region:SL2.40ch07:2091112..2091879- functional_description:"Jp18 (AHRD V1 *-*- Q8H6R4_PONTR); contains Interpro domain(s) IPR010993 Sterile alpha motif homology " 3 2 13 18 opLeV0100001446 sgn|U216674 CAAGATCAACTTCTGCCAGTTTTGCGGGGGCCCAAATAAGCATGAGATACCTGATGGTGAAGAAAAGGTG Experimental SGN-U563044 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|157348508|emb|CAO23400.1| (e_value=3e-102) unnamed; (*ATH) AT2G42070.1 (e_value=3e-100) Symbol: ATNUDT23 | MutT/nudix family protein, similar to SP:Q58549 ADP-ribose pyrophosphatase (EC 3.6.1.13) {Methanococcus jannaschii}; contains Pfam profile PF00293: NUDIX domain | chr2:17555268-17558253 REVERSE | Aliases: T6D20.4, T6D20_4, ATNUDT2... ; (*SWP) sp|P93740|NUD23_ARATH (e_value=3e-99) Nudix hydrolase 23, chloroplastic OS=Arabidopsis thaliana GN=NUDT23; Solyc03g062830.2.1 genomic_reference:SL2.40ch03 gene_region:29696132-29708002 transcript_region:SL2.40ch03:29696132..29708002- go_terms:GO:0047884 functional_description:"Nudix hydrolase 23 (AHRD V1 *-*- B6TED1_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain " 3 8 17 18 opLeV0100001447 sgn|U218121 ACTATGAGCAAACTGAGCCTGCCACTTACAACAATGCTCCGTTGATCGGAGTGTTAGCAAGACTTCATGC Experimental SGN-U567170 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|4165132|gb|AAD08699.1| (e_value=0) endo-beta-1,4-D-glucanase [Lycopersicon esculentum]; (*ATH) AT1G64390.1 (e_value=0) | Symbol: None | endo-1,4-beta-glucanase, putative / cellulase, putative, similar to endo-beta-1,4-glucanase GI:4972236 from (Fragaria x ananassa) (Plant Mol. Biol. 40, 323-332 (1999)) | chr1:23914782-23918892 FORWARD | Aliases: F15H21.9, F15H21_9; (*SWP) sp|Q42059|GUN6_ARATH (e_value=0) Endoglucanase 6 OS=Arabidopsis thaliana GN=At1g64390; Solyc08g082250.2.1 genomic_reference:SL2.40ch08 gene_region:62259660-62264948 transcript_region:SL2.40ch08:62259660..62264948+ go_terms:GO:0030246,GO:0005576,GO:0005975,GO:0003824 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0J0_MAIZE); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR012341 Six-hairpin glycosidase IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 " 3 6 17 18 opLeV0100001448 sgn|U219213 CCACCCGTCGCCTATCGTCGGACTCCAACGCCACCATCAGTGTGGAAATCAGCAAACCGTACACCGCTCA Experimental SGN-U575372 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|1709453|sp|P52903|ODPA_SOLTU (e_value=0) Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor (PDHE1-A); (*ATH) AT1G59900.1 (e_value=2e-178) Symbol: None | pyruvate dehydrogenase E1 component alpha subunit, mitochondrial (PDHE1-A), identical to SP:P52901 Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A) {Arabidopsis thaliana} | chr1:2205496... ; (*SWP) sp|P52903|ODPA_SOLTU (e_value=0) Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tuberosum; Solyc04g005080.2.1 genomic_reference:SL2.40ch04 gene_region:64905-71276 transcript_region:SL2.40ch04:64905..71276- go_terms:GO:0050897,GO:0008270 functional_description:"Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 ***- B6TMS5_MAIZE); contains Interpro domain(s) IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y " 3 4 17 18 opLeV0100001449 sgn|U225550 CAGTTCCTGCTGGCCTCCATCCGCTTGGCATGCAGTCTCAACTCATTAACAATAGAAGACGATTGATATG Experimental SGN-U580967 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157353257|emb|CAO45180.1| (e_value=1e-15) unnamed; (*ATH) AT1G56200.2 (e_value=3e-11) |; Solyc04g051850.2.1 genomic_reference:SL2.40ch04 gene_region:50309231-50311889 transcript_region:SL2.40ch04:50309231..50311889+ functional_description:"Unknown Protein (AHRD V1)" 3 2 17 18 opLeV0100001450 sgn|U215654 TCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTC Experimental SGN-U581707 Tomato 200607#2 [43 ESTs aligned] (*GB) gi|157348444|emb|CAO23336.1| (e_value=4e-44) unnamed; (*ATH) AT2G41410.1 (e_value=5e-31) | Symbol: None | calmodulin, putative, identical to SP:P30188 Calmodulin-like protein {Arabidopsis thaliana} | chr2:17268806-17269962 REVERSE | Aliases: F13H10.4, F13H10_4; (*SWP) sp|P30188|CML35_ARATH (e_value=4e-30) Probable calcium-binding protein CML35 OS=Arabidopsis thaliana GN=CML35; Solyc04g018110.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:9603164-9603892 transcript_region:SL2.40ch04:9603164..9603892+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein 1 (AHRD V1 *-*- B4FRR5_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type " 1 8 10 18 opLeV0100001451 sgn|U218529 TCCTACTCTCTCCAAGGATGCAGCTATGGGTTTGGTCCTTAGTGCAGCTAATGTAAGAGGCTGGACTACT Experimental SGN-U592696 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157336152|emb|CAO61982.1| (e_value=1e-76) unnamed; (*ATH) AT5G27280.1 (e_value=6e-59) | Symbol: None | zinc finger (DNL type) family protein, contains Pfam profile PF05180: DNL zinc finger | chr5:9617489-9618484 FORWARD | Aliases: F21A20.2; Solyc04g082020.2.1 genomic_reference:SL2.40ch04 gene_region:63421329-63424627 transcript_region:SL2.40ch04:63421329..63424627- functional_description:"DNL zinc finger family protein (AHRD V1 **-- B6TGI7_MAIZE); contains Interpro domain(s) IPR007853 Zinc finger, Zim17-type " 1 6 10 18 opLeV0100001452 sgn|U218551 TTCATCTTGCTCTTGGAACAAGATCATTGCTTTGAGGCGTGGTGTGGAGACTAGTGGTCTATCATTACAT Experimental SGN-U597004 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157337332|emb|CAO21678.1| (e_value=7e-30) unnamed; (*ATH) AT3G46510.1 (e_value=2e-24) Symbol: None | armadillo/beta-catenin repeat family protein / U-box domain-containing family protein, contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain | chr3:17134724-17137663 REVERSE | Aliases: F12A... ; (*SWP) sp|Q9SNC6|PUB13_ARATH (e_value=2e-23) U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13; \N \N 1 4 10 18 opLeV0100001453 sgn|U224650 GTTCTCCTAGTGCTGTTCAGATTTGAGATTTAGCTTTTAACTCTTGAAACTAGAACTGGTGTGACATGGC Experimental SGN-U575607 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|45479746|gb|AAS66760.1| (e_value=5e-27) PHAVOLUTA-like HD-ZIPIII protein [Nicotiana sylvestris]; (*ATH) AT2G34710.1 (e_value=4e-14) | Symbol: None | homeobox-leucine zipper transcription factor (HB-14), identical to homeodomain transcription factor (ATHB-14)GP:3132474 GB:Y11122 (Arabidopsis thaliana); | chr2:14646402-14651348 REVERSE | Aliases: T29F13.8, T29F13_8; (*SWP) sp|A2XK30|HOX32_ORYSI (e_value=5e-15) Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. indica GN=HOX32; \N \N 1 2 10 18 opLeV0100001454 sgn|U220635 GAATGATTGCCATGGGATTCAAAACTGCCAGAACTTTTGGTCTGATGCCGTTCACCACTATGGGAACAAA Experimental SGN-U567772 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|15222340|ref|NP_172201.1| (e_value=5e-15) expressed protein [Arabidopsis thaliana]; (*ATH) AT1G07210.1 (e_value=3e-17) | Symbol: None | 30S ribosomal protein S18 family, contains Pfam profile: PF01084 ribosomal protein S18; similar to 30S ribosomal protein S18 (SP:P80382) {Thermus thermophilus} | chr1:2215235-2217391 FORWARD | Aliases: F10K1.8, F10K1_8; Solyc01g058530.2.1 genomic_reference:SL2.40ch01 gene_region:59707735-59709386 transcript_region:SL2.40ch01:59707735..59709386- go_terms:GO:0005840 functional_description:"30S ribosomal protein S18 family (AHRD V1 *-*- D7KH00_ARALY); contains Interpro domain(s) IPR001648 Ribosomal protein S18 " 1 8 14 18 opLeV0100001455 sgn|U224378 TTGGCAGTGTACAGACTGATAATACTGACAGACCAATCCATGATGTGAGGATCTTGAGGACTACCGTCAA Experimental SGN-U573618 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157346172|emb|CAO15869.1| (e_value=1e-74) unnamed; (*ATH) AT2G36130.1 (e_value=1e-70) Symbol: None | peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative, contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type | chr2:15173863-15175569 FORWARD | Aliases: F9C22.6, F9C2... ; (*SWP) sp|Q9D0W5|PPIL1_MOUSE (e_value=3e-53) Peptidyl-prolyl cis-trans isomerase-like 1 OS=Mus musculus GN=Ppil1; Solyc09g010190.2.1 genomic_reference:SL2.40ch09 gene_region:3581547-3586678 transcript_region:SL2.40ch09:3581547..3586678- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- C6TF56_SOYBN); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type " 1 6 14 18 opLeV0100001456 sgn|U233394 TAATCACCCCCTCTAAACTGTTTCGGACAGTTTTATGACTATCACGGATGCTCCTCGGTCCTCCCTGCCA Experimental SGN-U590887 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|116787506|gb|ABK24533.1| (e_value=1e-34) unknown; (*ATH) AT3G58040.1 (e_value=4e-36) | Symbol: None | seven in absentia (SINA) family protein, similar to siah-1A protein (Mus musculus) GI:297035; contains Pfam profile PF03145: Seven in absentia protein family | chr3:21499493-21502465 FORWARD | Aliases: T10K17.250; (*SWP) sp|Q84JL3|SINA3_ARATH (e_value=4e-35) E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3; Solyc01g006190.2.1 genomic_reference:SL2.40ch01 gene_region:819250-823951 transcript_region:SL2.40ch01:819250..823951- go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 **-* B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein " 1 4 14 18 opLeV0100001457 sgn|U241766 CTCTAGTGTCTATGCTCATGCGTGTGCACAGACGGAGAAGTTACCAAGGAACTCCTGATCTTTTTCCTTC Experimental SGN-U601780 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157354462|emb|CAO47088.1| (e_value=8e-17) unnamed; (*ATH) AT1G22860.1 (e_value=2e-17) | Symbol: None | TGF beta receptor associated protein-related, contains weak similarity to TGF beta receptor associated protein-1 (Homo sapiens) gi:3150052:gb:AAC16903 | chr1:8083389-8089225 FORWARD | Aliases: F19G10.18, F19G10_18; Solyc05g015210.2.1 genomic_reference:SL2.40ch05 gene_region:10037526-10072881 transcript_region:SL2.40ch05:10037526..10072881+ go_terms:GO:0005488 functional_description:"Transforming growth factor-beta receptor-associated protein 1 (AHRD V1 **-- TGFA1_MOUSE); contains Interpro domain(s) IPR019453 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 " 1 2 14 18 opLeV0100001458 sgn|U212996 GGGCTTGTGGCTTTTCCGTGGAAAGGAAATTCCCATGTTTGTTATGGAGGAGGTCTATGACATGGAACTC Experimental SGN-U579804 Tomato 200607#2 [64 ESTs aligned] (*GB) gi|77416961|gb|ABA81876.1| (e_value=0) unknown [Solanum tuberosum]; (*ATH) AT1G09640.1 (e_value=1e-158) | Symbol: None | elongation factor 1B-gamma, putative / eEF-1B gamma, putative, Similar to elongation factor 1-gamma (gb:EF1G_XENLA). ESTs gb:T20564,gb:T45940,gb:T04527 come from this gene | chr1:3119917-3122528 FORWARD | Aliases: F21M12.3, F21M12_3; (*SWP) sp|Q6YW46|EF1G2_ORYSJ (e_value=3e-168) Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500; Solyc11g028100.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:16767881-16769971 transcript_region:SL2.40ch11:16767881..16769971+ go_terms:GO:0005853 functional_description:"Elongation factor 1-gamma (AHRD V1 ***- B7SDI2_ORYSJ); contains Interpro domain(s) IPR001662 Translation elongation factor EF1B, gamma chain, conserved " 1 8 18 18 opLeV0100001459 sgn|U227121 CTCGGTAGCTCGATAGTATGCTTGATGAGAGCTCAGTAGTTTTCTCTCGTCCATAAAAGAGTGCAAACCT Experimental SGN-U565094 Tomato 200607#2 [3 ESTs aligned] \N \N 1 6 18 18 opLeV0100001460 sgn|U220668 GGAGAAGTCTCAAGGAGCGAAACCACGAGTATTTCAGCAGTCTTCGGATAACTCAAGTCATAGCAACAGC Experimental SGN-U584074 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157349996|emb|CAO39895.1| (e_value=5e-145) unnamed; (*ATH) AT5G06530.2 (e_value=1e-144) Symbol: None | similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:At3g52310.1); similar to putative ABC transporter AbcG1 [Oryza sativa (japonica cultivar-group)] (GB:XP_480256.1); contains InterPro domain AAA ATPase (InterPro:IP... ; (*SWP) sp|Q93YS4|WBC23_ARATH (e_value=1e-143) White-brown complex homolog protein 23 OS=Arabidopsis thaliana GN=WBC23; Solyc04g070970.2.1 genomic_reference:SL2.40ch04 gene_region:55373820-55377979 transcript_region:SL2.40ch04:55373820..55377979- go_terms:GO:0017127 functional_description:"ABC transporter G family member 22 (AHRD V1 **** AB22G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like " 1 4 18 18 opLeV0100001461 sgn|U214763 ATGGTTTGCTGGGCAACATTGACGCAAATTCTGGCGATCCCCAGATTGGTTGGGACACAGATCAATTTTT Experimental SGN-U574414 Tomato 200607#2 [72 ESTs aligned] (*GB) gi|157352288|emb|CAO43316.1| (e_value=0) unnamed; (*ATH) AT5G57655.2 (e_value=0) | Symbol: None | xylose isomerase family protein, contains similarity to Xylose isomerase (EC 5.3.1.5) (Swiss-Prot:P22842) (Thermoanaerobacter ethanolicus) | chr5:23363987-23367230 FORWARD | Aliases: None; (*SWP) sp|Q9FKK7|XYLA_ARATH (e_value=0) Xylose isomerase OS=Arabidopsis thaliana GN=XYLA; Solyc07g006650.2.1 genomic_reference:SL2.40ch07 gene_region:1517595-1522933 transcript_region:SL2.40ch07:1517595..1522933- go_terms:GO:0005975,GO:0009045 functional_description:"Xylose isomerase (AHRD V1 ***- B9T2E0_RICCO); contains Interpro domain(s) IPR013452 Xylose isomerase, bacterial type " 1 2 18 18 opLeV0100001462 sgn|U214634 AACCCTCGTATTCGGAATTTCAACTACTGGCTAGGGAGAGTGAGTATGCTGCCTGGACACTTGTCAATGG Experimental SGN-U578798 Tomato 200607#2 [48 ESTs aligned] (*GB) gi|53689727|gb|AAU89741.1| (e_value=6e-133) hypothetical protein [Solanum tuberosum]; (*ATH) AT1G07040.1 (e_value=6e-123) | Symbol: None | expressed protein | chr1:2160944-2163302 REVERSE | Aliases: F10K1.25, F10K1_25; Solyc05g007060.2.1 genomic_reference:SL2.40ch05 gene_region:1644471-1649129 transcript_region:SL2.40ch05:1644471..1649129- functional_description:"Bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (AHRD V1 **-- A8T8Q5_9VIBR)" 3 8 10 18 opLeV0100001463 sgn|U216617 CGTGGCCGGGGTACCATTTGACAACACTACAACCACCGGAATAATAGTCTACGAAGGTGCAAAATCATCA Experimental SGN-U567371 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|170177495|gb|ACB10229.1| (e_value=4e-154) laccase; (*ATH) AT3G09220.1 (e_value=3e-109) Symbol: None | laccase family protein / diphenol oxidase family protein, similar to laccase (Pinus taeda)(GI:13661201), laccase GB:CAA74105 (Populus balsamifera subsp. trichocarpa); contains Pfam profile: Multicopper oxidases | chr3:2827245-2830548 ... ; (*SWP) sp|Q9SR40|LAC7_ARATH (e_value=3e-108) Laccase-7 OS=Arabidopsis thaliana GN=LAC7; Solyc05g043360.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:55217891-55222581 transcript_region:SL2.40ch05:55217891..55222581+ go_terms:GO:0048046,GO:0055114 functional_description:"Laccase (AHRD V1 ***- B1PXG7_SOLLC); contains Interpro domain(s) IPR017761 Laccase " 3 6 10 18 opLeV0100001464 sgn|U242967 CCCTTCTCCGAGGATCAGGGATTTTCCACAGCCCGTGTCCAAAAATTACGGGAAAGTATTTTCCATGGGT Experimental SGN-U602542 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157341957|emb|CAO63413.1| (e_value=8e-32) unnamed; (*ATH) AT4G17840.1 (e_value=2e-31) | Symbol: None | expressed protein | chr4:9918067-9920488 REVERSE | Aliases: T6K21.20, T6K21_20; \N \N 3 4 10 18 opLeV0100001465 sgn|U239361 ATAAGGTGATTTCTGGTGTAACTCTCAGTCCCCGCAGCACCAGAGGTTATCTGAGAACTAGCCTCAGATG Experimental SGN-U604445 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157347242|emb|CAO17624.1| (e_value=5e-55) unnamed; (*ATH) AT3G05330.1 (e_value=2e-53) | Symbol: None | cyclin family, low similarity to microtubule-binding protein TANGLED1 (Zea mays) GI:11228986; contains Pfam profile PF00134: Cyclin, N-terminal domain | chr3:1518950-1521465 REVERSE | Aliases: T12H1.30, T12H1_30; Solyc01g099270.2.1 genomic_reference:SL2.40ch01 gene_region:81306624-81308855 transcript_region:SL2.40ch01:81306624..81308855- functional_description:"Microtubule binding protein (AHRD V1 ***- A6YTD5_CUCME)" 3 2 10 18 opLeV0100001466 sgn|U213105 TTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCC Experimental SGN-U580126 Tomato 200607#2 [162 ESTs aligned] (*GB) gi|170388|gb|AAA34140.1| (e_value=7e-143) chlorophyll a/b-binding protein; (*ATH) AT3G54890.1 (e_value=2e-121) Symbol: LHCA1 | chlorophyll A-B binding protein / LHCI type I (CAB), identical to chlorophyll A/B-binding protein (Arabidopsis thaliana) GI:16207; contains Pfam profile: PF00504 chlorophyll A-B binding protein | chr3:20350482-20351968 REVERSE | Alia... ; (*SWP) sp|P12360|CB11_SOLLC (e_value=7e-140) Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A; Solyc05g056080.2.1 genomic_reference:SL2.40ch05 gene_region:64607811-64609969 transcript_region:SL2.40ch05:64607811..64609969- functional_description:"Unknown Protein (AHRD V1)" 3 8 14 18 opLeV0100001467 sgn|U221363 CTGCACATTGCTGCTGAAATGGTGTCACCAGACATGGTAGCTGTTCTATTAGACCATCATGCTGATCCCA Experimental SGN-U574717 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157348441|emb|CAO23333.1| (e_value=5e-170) unnamed; (*ATH) AT2G41370.1 (e_value=2e-165) | Symbol: None | ankyrin repeat family protein / BTB/POZ domain-containing protein, contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain | chr2:17244823-17247518 REVERSE | Aliases: F13H10.8, F13H10_8; (*SWP) sp|P93002|NPR1_ARATH (e_value=6e-26) Regulatory protein NPR1 OS=Arabidopsis thaliana GN=NPR1; Solyc04g040220.2.1 genomic_reference:SL2.40ch04 gene_region:31130616-31133135 transcript_region:SL2.40ch04:31130616..31133135- go_terms:GO:0005515 functional_description:"NPR1-like protein (Fragment) (AHRD V1 ***- Q2QBV6_PYRCO); contains Interpro domain(s) IPR013069 BTB/POZ " 3 6 14 18 opLeV0100001468 sgn|U214988 GTGGTGTTGATGCTAACATCGCCAGCAGTTATGGAAGCGGAGAAAGCAATTTTGGCTTTGGCACAAGTGG Experimental SGN-U581588 Tomato 200607#2 [53 ESTs aligned] (*GB) gi|147774036|emb|CAN71872.1| (e_value=2e-40) hypothetical; (*ATH) AT5G61030.1 (e_value=2e-37) Symbol: None | RNA-binding protein, putative, similar to RNA-binding protein from (Solanum tuberosum) GI:15822705, (Nicotiana tabacum) GI:15822703, (Nicotiana sylvestris) GI:624925; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA re... ; (*SWP) sp|Q9SVM8|GRP2_ARATH (e_value=1e-28) Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2; Solyc10g081180.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61634176-61635965 transcript_region:SL2.40ch10:61634176..61635965+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein (AHRD V1 *--- Q941H8_SOLTU); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein " 3 4 14 18 opLeV0100001469 sgn|U214312 CACCTCAACCGGTACAATCTCCCATGCGAAAGCACCTGCTTCCTGAGCAGCGATTCCACGTTCGAAACTT Experimental SGN-U588811 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|53854350|gb|AAU95618.1| (e_value=3e-51) cytosolic acetoacetyl-coenzyme A thiolase [Nicotiana tabacum]; (*ATH) AT5G47720.3 (e_value=1e-45) Symbol: None | acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative, strong similarity to Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) (Raphanus sativus) GI:1542941; contains InterPro accession IPR002155: Thiolase | chr5:1934... ; (*SWP) sp|Q9FIK7|THIC2_ARATH (e_value=1e-44) Probable acetyl-CoA acetyltransferase, cytosolic 2 OS=Arabidopsis thaliana GN=At5g47720; Solyc07g045350.2.1 genomic_reference:SL2.40ch07 gene_region:55772647-55779165 transcript_region:SL2.40ch07:55772647..55779165- go_terms:GO:0003985 functional_description:"Acetyl-CoA C-acetyltransferase protein (AHRD V1 **** D3YN47_9ERIC); contains Interpro domain(s) IPR002155 Thiolase " 3 2 14 18 opLeV0100001470 sgn|U222250 AATACCAGGGTGCTCAGCCATGCGCATACCATAAGAAAGTGCTTCACGGGCATCATGGCCTCCGAAGAAC Experimental SGN-U575435 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157358237|emb|CAO65874.1| (e_value=1e-44) unnamed; (*ATH) AT5G41610.1 (e_value=4e-40) | Symbol: None | cation/hydrogen exchanger, putative (CHX18), monovalent cation:proton antiporter family 2 (CPA2) member, PMID:11500563 | chr5:16655598-16658956 REVERSE | Aliases: MBK23.12, MBK23_12; \N \N 3 8 18 18 opLeV0100001471 sgn|U222118 ATGATCATCTTCCATCTGAGCTTCCTGCCTGCACTTCTGGTTGTCAGTCCCAGAGTGTATTGGCCGATGA Experimental SGN-U584480 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|147843803|emb|CAN81604.1| (e_value=3e-91) hypothetical; (*ATH) AT1G04300.2 (e_value=1e-29) |; Solyc06g053750.2.1 genomic_reference:SL2.40ch06 gene_region:33093445-33109434 transcript_region:SL2.40ch06:33093445..33109434+ functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 *--- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR002083 MATH " 3 6 18 18 opLeV0100001472 sgn|U227490 CTGATGGCTATACGTATGAGCATAGAGCAATAAAGTTATGGTTTGACAGATACAGTGTATCACCCATGAC Experimental SGN-U567038 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157342604|emb|CAO65316.1| (e_value=1e-45) unnamed; (*ATH) AT2G19410.1 (e_value=8e-42) | Symbol: None | protein kinase family protein, contains Pfam profile: PF00069 Eukaryotic protein kinase domain | chr2:8411983-8416094 REVERSE | Aliases: F27F23.21, F27F23_21; (*SWP) sp|Q8S8S7|PUB34_ARATH (e_value=7e-41) U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34; Solyc12g008990.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2291562-2296507 transcript_region:SL2.40ch12:2291562..2296507+ go_terms:GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 3 4 18 18 opLeV0100001473 sgn|U213374 GGCTCCTTCCACTTGGTGAAGTGCCAAGTTGGTCAAATCACAACTGATTCGTCATACTCAGAATTGGAGG Experimental SGN-U578593 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|23193174|gb|AAN14410.1| (e_value=0) bifunctional lysine-ketoglutarate reductase/saccharopine dehydrogenase [Gossypium hirsutum]; (*ATH) AT4G33150.1 (e_value=0) Symbol: None | lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme, identical to lysine-ketoglutarate reductase/saccharopine dehydrogenase GI:2052508 from (Arabidopsis thaliana) | chr4:15985201-15991539 REVERSE | Aliases: F... ; (*SWP) sp|Q9SMZ4|AASS_ARATH (e_value=0) Alpha-aminoadipic semialdehyde synthase OS=Arabidopsis thaliana GN=LKR/SDH; Solyc07g017610.2.1 genomic_reference:SL2.40ch07 gene_region:7668445-7680370 transcript_region:SL2.40ch07:7668445..7680370+ go_terms:GO:0047131 functional_description:"Saccharopine dehydrogenase (NAD(+) L-glutamate-forming) (AHRD V1 *-** C7PUW7_CHIPD); contains Interpro domain(s) IPR005097 Saccharopine dehydrogenase " 3 2 18 18 opLeV0100001474 sgn|U216063 TGCGGACTTGGATGATGACATGGCCTGTGCTACTGCCTATCTCCAGTATGTAGTGCAACATGTGTTGGAG Experimental SGN-U564860 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|15236037|ref|NP_193462.1| (e_value=0) asparaginyl-tRNA synthetase, chloroplast/mitochondrial (asparagine-tRNA ligase) (AsnRS) (SYNO) [Arabidopsis thaliana]; (*ATH) AT4G17300.1 (e_value=0) | Symbol: None | asparaginyl-tRNA synthetase, chloroplast, mitochondrial / asparagine-tRNA ligase / AsnRS (SYNO), nearly identical to SP:O48593 | chr4:9681551-9684984 FORWARD | Aliases: DL4685W, FCAALL.396; (*SWP) sp|O48593|SYNO_ARATH (e_value=0) Asparaginyl-tRNA synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYNO; Solyc03g019940.2.1 genomic_reference:SL2.40ch03 gene_region:6810545-6817858 transcript_region:SL2.40ch03:6810545..6817858+ go_terms:GO:0042802,GO:0004816 functional_description:"Asparaginyl-tRNA synthetase (AHRD V1 **** D6YS69_WADCW); contains Interpro domain(s) IPR004522 Asparaginyl-tRNA synthetase, class IIb " 1 8 11 18 opLeV0100001475 sgn|U222575 AACAGCCAAGACGCAAGACTCGGAAAATCCTTACAGATGGAAACTACAACAGAATACAAGGTGCAACAAT Experimental SGN-U582768 Tomato 200607#2 [4 ESTs aligned] \N \N 1 6 11 18 opLeV0100001476 sgn|U213244 TGACTAAAGATCCAAGTTTTCAAGCAGCCTTAGCAGCCGCCATATCAGGA Experimental SGN-U566778 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|192337550|gb|ACF04195.1| (e_value=2e-29) WRKY; (*ATH) AT4G31800.2 (e_value=4e-17) Symbol: None | similar to WRKY family transcription factor [Arabidopsis thaliana] (TAIR:At2g25000.1); similar to WRKY transcription factor 21 [Larrea tridentata] (GB:AAW30662.1); contains InterPro domain DNA-binding WRKY (InterPro:IPR003657) | chr4:... ; (*SWP) sp|Q9C5T4|WRK18_ARATH (e_value=4e-16) WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18; Solyc03g116890.2.1 genomic_reference:SL2.40ch03 gene_region:60192911-60195340 transcript_region:SL2.40ch03:60192911..60195340- go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor 2 (AHRD V1 **** C0L2R9_SOLLC); contains Interpro domain(s) IPR003657 DNA-binding WRKY " 1 4 11 18 opLeV0100001477 sgn|U213335 AAAAAAATCGGAAGCTTTGTAGGAGGATCTCTCAGGGATTTAGTCGGCGATGGCGTCCAAGCGGATTCTG Experimental SGN-U580479 Tomato 200607#2 [47 ESTs aligned] (*GB) gi|118484605|gb|ABK94176.1| (e_value=6e-83) unknown; (*ATH) AT5G53300.2 (e_value=7e-83) | Symbol: None | ubiquitin-conjugating enzyme 10 (UBC10), E2; identical to gi:297877, SP:P35133 | chr5:21649740-21651389 REVERSE | Aliases: None; (*SWP) sp|P35133|UBC10_ARATH (e_value=6e-82) Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10; \N \N 1 2 11 18 opLeV0100001478 sgn|U223624 GGCAATACACCACGGTGTCGCGCCTTTGACACTGAACCTTTCTGAACCAGATCCAGTATTCAATGGTGGT Experimental SGN-U563492 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157349011|emb|CAO24089.1| (e_value=1e-99) unnamed; (*ATH) AT2G04540.1 (e_value=1e-92) Symbol: None | 3-oxoacyl-(acyl-carrier-protein) synthase II, putative, similar to Swiss-Prot:P56902 3-oxoacyl-(acyl-carrier-protein) synthase II (EC 2.3.1.41) (Beta- ketoacyl-ACP synthase II) (KAS II) (Rhizobium meliloti) | chr2:1581413-1584685 REVE... ; (*SWP) sp|Q8L3X9|KASM_ARATH (e_value=1e-91) 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Arabidopsis thaliana GN=KAS; Solyc07g049570.2.1 genomic_reference:SL2.40ch07 gene_region:57229419-57239024 transcript_region:SL2.40ch07:57229419..57239024+ go_terms:GO:0005515,GO:0004315 functional_description:"3-oxoacyl-(Acyl-carrier-protein) synthase (AHRD V1 **** Q2W5G3_MAGSA); contains Interpro domain(s) IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 " 1 8 15 18 opLeV0100001479 sgn|U233294 TGGTTGTAGCCCAAATGCTCTAGCCCAAAACAGTCCTGATGGAAGAACCT Experimental SGN-U583108 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|60459375|gb|AAX20033.1| (e_value=8e-157) GDSL-lipase; (*ATH) AT4G18970.1 (e_value=1e-129) Symbol: None | GDSL-motif lipase/hydrolase family protein, similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from (Arabidopsis thaliana); contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase | chr4:10389122-1... ; (*SWP) sp|P40603|APG_BRANA (e_value=7e-18) Anther-specific proline-rich protein APG (Fragment) OS=Brassica napus GN=APG; Solyc02g071610.2.1 genomic_reference:SL2.40ch02 gene_region:35588862-35591358 transcript_region:SL2.40ch02:35588862..35591358+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g45670 (AHRD V1 ***- GDL82_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL " 1 6 15 18 opLeV0100001480 sgn|U240710 GCTAGGAATTTACATGCTAGATCTAATTGCTAGGAATTTGCTAGATGGCAACGAAGTTGTGGGAGAGTTT Experimental SGN-U601599 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|109676322|gb|ABG37643.1| (e_value=1e-29) unknown; (*ATH) AT5G25320.1 (e_value=9e-29) | Symbol: None | ACT domain-containing protein, contains Pfam ACT domain PF01842 | chr5:8787406-8789533 REVERSE | Aliases: F18G18.60, F18G18_60; Solyc06g011520.2.1 genomic_reference:SL2.40ch06 gene_region:7974245-7977278 transcript_region:SL2.40ch06:7974245..7977278- go_terms:GO:0008152 functional_description:"ACT domain-containing protein (AHRD V1 **-- D7M3X3_ARALY); contains Interpro domain(s) IPR002912 Amino acid-binding ACT " 1 4 15 18 opLeV0100001481 sgn|U225155 GCAGAGTACGAGGAATCATATCATTGCCATGGGAGAAAAAATCGAAACACAGGAGAGGAAACAAGTGCAG Experimental SGN-U569512 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|729774|sp|P41152|HSF30_SOLPE (e_value=1e-175) RecName:; (*ATH) AT2G26150.1 (e_value=2e-87) | Symbol: None | heat shock transcription factor family protein, contains Pfam profile: PF00447 HSF-type DNA-binding domain | chr2:11142760-11144474 FORWARD | Aliases: T19L18.4, T19L18_4; (*SWP) sp|P41152|HSF30_SOLPE (e_value=8e-177) Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30; Solyc08g062960.2.1 genomic_reference:SL2.40ch08 gene_region:49589145-49591151 transcript_region:SL2.40ch08:49589145..49591151- go_terms:GO:0005515,GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding " 1 2 15 18 opLeV0100001482 sgn|U217164 AGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGC Experimental SGN-U565482 Tomato 200607#2 [26 ESTs aligned] (*GB) gi|157335559|emb|CAO61389.1| (e_value=1e-51) unnamed; (*ATH) AT5G47830.1 (e_value=5e-44) | Symbol: None | expressed protein | chr5:19390124-19391537 REVERSE | Aliases: MCA23.17, MCA23_17; Solyc04g078600.2.1 genomic_reference:SL2.40ch04 gene_region:60872971-60876969 transcript_region:SL2.40ch04:60872971..60876969+ functional_description:"Genomic DNA chromosome 5 P1 clone MCA23 (AHRD V1 **-- Q9FIJ8_ARATH)" 1 8 19 18 opLeV0100001483 sgn|U221878 TCAAAGCTGATGATCAGAGTACATCTCAGGCCTTCTCAGAGTTGTTCCAGTCAGCCTTGTCCAAATTTGG Experimental SGN-U576056 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|15239071|ref|NP_196710.1| (e_value=0) adaptin family [Arabidopsis thaliana]; (*ATH) AT5G11490.1 (e_value=0) Symbol: None | adaptin family protein, similar to SP:Q9WV76 Adapter-related protein complex 4 beta 1 subunit (Beta subunit of AP- 4) {Mus musculus}, beta-adaptin Drosophila 1 {Drosophila melanogaster} GI:434902; contains Pfam profile: PF01602 Adapti... ; (*SWP) sp|Q54R84|AP4B_DICDI (e_value=1e-104) AP-4 complex subunit beta OS=Dictyostelium discoideum GN=ap4b1; Solyc08g068210.2.1 genomic_reference:SL2.40ch08 gene_region:54522106-54537913 transcript_region:SL2.40ch08:54522106..54537913+ go_terms:GO:0030276 functional_description:"AP-1 complex subunit beta-1 (AHRD V1 ***- C5GH51_AJEDR); contains Interpro domain(s) IPR016342 Adaptor protein complex, beta subunit " 1 6 19 18 opLeV0100001484 sgn|U238905 GATATGATAAGTAGTCAAGGTGTCCTGCAGAAACTCATCGGGGATGGGCTATGACGTCTAATATTGCAGA Experimental SGN-U573474 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205400|gb|AAU90303.2| (e_value=3e-13) Zinc; Solyc04g071390.1.1 evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:55961936-55964244 transcript_region:SL2.40ch04:55961936..55964244- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SJD8_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant " 1 4 19 18 opLeV0100001485 sgn|U229206 AGGACTCTCAATAGTTCTTCCTTGGTTTCGTTAAGAGTGAAGCGAGTTGCGCTTTCTGCCACACAAACAA Experimental SGN-U575674 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157355592|emb|CAO49401.1| (e_value=2e-151) unnamed; (*ATH) AT1G73060.1 (e_value=1e-152) | Symbol: None | expressed protein | chr1:27482661-27487376 FORWARD | Aliases: F3N23.26, F3N23_26; Solyc06g068480.2.1 genomic_reference:SL2.40ch06 gene_region:38831809-38837277 transcript_region:SL2.40ch06:38831809..38837277- functional_description:"Homology to unknown gene (Fragment) (AHRD V1 ***- Q01G24_OSTTA); contains Interpro domain(s) IPR018962 Domain of unknown function DUF1995 " 1 2 19 18 opLeV0100001486 sgn|U218868 CCTAGTTGAGACAGGAGAAAGCAATTCCCCTGGTTTGGAGATCCAGGTGACACAACTAAGCAACAATGAC Experimental SGN-U576744 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|157347977|emb|CAO22564.1| (e_value=0) unnamed; (*ATH) AT1G03090.2 (e_value=0) Symbol: None | methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA), nearly identical to SP:Q42523 Methylcrotonyl-CoA carboxylase alpha chain, mitochondrial precursor (EC 6.4.1.4) (3-Methylcrotonyl-Co... ; (*SWP) sp|Q42777|MCCA_SOYBN (e_value=0) Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Glycine max GN=MCCA; Solyc09g065540.2.1 genomic_reference:SL2.40ch09 gene_region:59258116-59272301 transcript_region:SL2.40ch09:59258116..59272301+ go_terms:GO:0004485 functional_description:"Methylcrotonoyl-CoA carboxylase alpha chain (AHRD V1 **** B0RM10_XANCB); contains Interpro domain(s) IPR013816 ATP-grasp fold, subdomain 2 " 3 8 11 18 opLeV0100001487 sgn|U226402 ATCCATGATCGCCATTTTGACTGCTAAGGTTTCCCCTTTAAACCCTCCCCAGTATACAGATCCCTTTATC Experimental SGN-U584758 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157335398|emb|CAO61228.1| (e_value=2e-156) unnamed; (*ATH) AT2G33580.1 (e_value=1e-104) Symbol: None | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein, protein kinase (Arabidopsis thaliana) GI:2852449; contains Pfam profiles PF01476: LysM domain, PF00069: Protein kinase domain | chr2:14226699-142289... ; (*SWP) sp|Q9CAL2|CRK3_ARATH (e_value=3e-35) Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3; Solyc12g089020.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62622167-62623865 transcript_region:SL2.40ch12:62622167..62623865- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 3 4 11 18 opLeV0100001488 AF096261 CACTCTCCAAGAATACCATCAACCGAAGAGATTGCCGTCAGAGTTAACAAGATGCTTGCAGTCCTTGACA Experimental SGN-U592252 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|8439545|gb|AAF74983.1|AF082893_1 (e_value=3e-144) methionine; (*ATH) AT3G03780.1 (e_value=9e-136) Symbol: None | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative / vitamin-B12-independent methionine synthase, putative / cobalamin-independent methionine synthase, putative, very strong similarity to SP:O50008 5-methy... ; (*SWP) sp|Q42662|METE_SOLSC (e_value=3e-139) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET; Solyc10g081510.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61890862-61894137 transcript_region:SL2.40ch10:61890862..61894137+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase " 3 2 11 18 opLeV0100001489 sgn|U225716 CATAGGCCACTTGCACCTGCTATTACACGGGACCAAAGAGCTACAGATGAACCACTTCCGTATGGTGATA Experimental SGN-U562822 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157355110|emb|CAO48483.1| (e_value=2e-86) unnamed; (*ATH) AT3G19180.1 (e_value=2e-66) | Symbol: None | cell division protein-related, weak similarity to cell division protein Ftn2 (Synechococcus sp. PCC 7942) GI:16226084 | chr3:6632682-6637205 FORWARD | Aliases: MVI11.9; Solyc03g098610.2.1 genomic_reference:SL2.40ch03 gene_region:54355155-54363385 transcript_region:SL2.40ch03:54355155..54363385- go_terms:GO:0043621 functional_description:"Genomic DNA chromosome 3 P1 clone MVI11 (AHRD V1 **-- Q9LJL2_ARATH)" 3 8 15 18 opLeV0100001490 sgn|U230538 CCCGGGGATGTGAGGATTCTGGAGGCTGTAGATGTTCCTGGTTTACACCATCTCTATGATTGTCTGGTCT Experimental SGN-U567398 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|167995454|gb|ACA13601.1| (e_value=0) RNA-dependent; (*ATH) AT3G49500.1 (e_value=2e-177) | Symbol: None | RNA-dependent RNA polymerase (SDE1), identical to RNA-dependent RNA polymerase (Arabidopsis thaliana) gi:8248473:gb:AAF74208 | chr3:18360178-18364190 REVERSE | Aliases: T9C5.95; (*SWP) sp|O14227|RDR1_SCHPO (e_value=5e-34) RNA-dependent RNA polymerase 1 OS=Schizosaccharomyces pombe GN=rdr1; Solyc04g014870.2.1 genomic_reference:SL2.40ch04 gene_region:5125889-5130330 transcript_region:SL2.40ch04:5125889..5130330+ go_terms:GO:0003676 functional_description:"RNA-dependent RNA polymerase (AHRD V1 ***- B3TNC1_9SOLA); contains Interpro domain(s) IPR007855 RNA-dependent RNA polymerase, eukaryotic-type " 3 6 15 18 opLeV0100001491 sgn|U213227 AAGTCAGATACTGGCTTCACAACAGTAGATATCACCAGTCGACTCGATGTAGTCCCCTTTTGAGCCAAAG Experimental SGN-U571926 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157331822|emb|CAO67158.1| (e_value=2e-49) unnamed; (*ATH) AT4G16745.1 (e_value=2e-31) | Symbol: None | exostosin family protein, contains Pfam PF03016: Exostosin family | chr4:9411914-9414133 FORWARD | Aliases: None; Solyc07g006170.2.1 genomic_reference:SL2.40ch07 gene_region:1005388-1007327 transcript_region:SL2.40ch07:1005388..1007327+ go_terms:GO:0003824 functional_description:"Exostosin-like (AHRD V1 ***- Q2HVN7_MEDTR); contains Interpro domain(s) IPR004263 Exostosin-like " 3 4 15 18 opLeV0100001492 sgn|U225373 GGTGAATTCTCATCAAGCAACACAAGTAGCAGTACTCTTCTAGATCCTGAGGAATTCAGAAGACAAGGAC Experimental SGN-U581920 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|82395822|gb|ABB72475.1| (e_value=4e-66) phenylacetaldehyde; (*ATH) AT2G20340.1 (e_value=6e-53) Symbol: None | tyrosine decarboxylase, putative, similar to tyrosine/dopa decarboxylase (Papaver somniferum) GI:3282527, SP:Q06087 Tyrosine decarboxylase 3 (EC 4.1.1.25) {Petroselinum crispum}; contains Pfam profile PF00282: Pyridoxal-dependent deca... ; (*SWP) sp|Q06086|TYDC2_PETCR (e_value=1e-58) Tyrosine decarboxylase 2 OS=Petroselinum crispum GN=TYRDC-2; Solyc03g045020.2.1 genomic_reference:SL2.40ch03 gene_region:15269790-15271338 transcript_region:SL2.40ch03:15269790..15271338- go_terms:GO:0004058 functional_description:"Aromatic L-amino acid decarboxylase (AHRD V1 **** A6BM84_ROSDA); contains Interpro domain(s) IPR010977 Aromatic-L-amino-acid decarboxylase " 3 2 15 18 opLeV0100001493 sgn|U236236 TTTGTCCCACGGATAGCGAACGACGTGATTTTTTGATTGTTTTAGTAAAAAACCCTTCCAAAAACTTGGC Experimental SGN-U593853 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157357326|emb|CAO63849.1| (e_value=1e-16) unnamed; \N \N 3 8 19 18 opLeV0100001494 sgn|U223662 CCTCTGGGAGTGAATAACTCACCCATTGCTTCAAGCTAAGATCTCCCTCAAACTCACTAGGCTTTCTCCT Experimental SGN-U582491 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157348365|emb|CAO23152.1| (e_value=4e-105) unnamed; (*ATH) AT3G47570.1 (e_value=2e-66) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, protein kinase Xa21 - Oryza sativa, PIR:A57676 | chr3:17538492-17541914 FORWARD | Aliases: F1P2.120; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=4e-47) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2; Solyc03g006100.2.1 genomic_reference:SL2.40ch03 gene_region:771603-775358 transcript_region:SL2.40ch03:771603..775358+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK" 3 6 19 18 opLeV0100001495 Y14810 TGGTTCATAAGAGATTTCCCGTAGGGCCTATTGCCAACGTGCCTTACTTTCGGAGGGTAGCTGCAGCACA Experimental SGN-U568611 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|112819500|gb|ABI23730.1| (e_value=1e-152) carotene; (*ATH) AT4G25700.1 (e_value=7e-91) | Symbol: None | beta-carotene hydroxylase, identical to GI:1575296 | chr4:13093946-13095944 REVERSE | Aliases: L73G19.80, L73G19_80; (*SWP) sp|Q01332|CRTZ_ESCVU (e_value=9e-18) Beta-carotene hydroxylase OS=Escherichia vulneris GN=crtZ; Solyc03g007960.2.1 genomic_reference:SL2.40ch03 gene_region:2447872-2450289 transcript_region:SL2.40ch03:2447872..2450289+ go_terms:GO:0010291 functional_description:"Beta-carotene hydroxylase 2" 3 4 19 18 opLeV0100001496 sgn|U213984 TAACATTGTCACGTAGCAGTGAACTTTGTACACTTCTTTGACGGTTTTGCTATTGGCCCCTTTTGAAAAT Experimental SGN-U579776 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|84688910|gb|ABC61504.1| (e_value=3e-28) AGO4-1; (*ATH) AT5G21030.1 (e_value=6e-23) Symbol: None | PAZ domain-containing protein / piwi domain-containing protein, similar to SP:O04379 Argonaute protein (AGO1) {Arabidopsis thaliana}, SP:Q9XGW1 PINHEAD protein (ZWILLE protein) {Arabidopsis thaliana}; contains Pfam profiles PF02171: P... ; \N \N 3 2 19 18 opLeV0100001497 sgn|U227684 GAGTTGGTGGAGCAAATCAAGTCAATGTCGAAGCAAAGGGAAGATGAACTGCAGGGAGAATTACAAAACT Experimental SGN-U570838 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|113205231|gb|AAT39303.2| (e_value=0) Myosin; (*ATH) AT5G60210.1 (e_value=4e-86) | Symbol: None | cytoplasmic linker protein-related, contains weak similarity to cytoplasmic linker protein CLIP-170 (GI:2905649) (Gallus gallus) | chr5:24260313-24262858 REVERSE | Aliases: F15L12.15, F15L12_15; (*SWP) sp|Q9M9F9|Y1843_ARATH (e_value=1e-19) Uncharacterized protein At1g78430 OS=Arabidopsis thaliana GN=At1g78430; Solyc11g072490.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52765942-52769984 transcript_region:SL2.40ch11:52765942..52769984+ functional_description:"Interactor of constitutive active ROPs 3 (AHRD V1 ***- ICR3_ARATH)" 1 8 12 18 opLeV0100001498 sgn|U234614 TGAGGGCAACAAATCCTTTGAACCAATGCTTTGGGCTGATGTCCCTTGGGGCTCGATTGGCCATGTCTCA Experimental SGN-U589650 Tomato 200607#2 [1 ESTs aligned] Solyc03g098490.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:54217657-54218670 transcript_region:SL2.40ch03:54217657..54218670- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008480 Protein of unknown function DUF761, plant " 1 6 12 18 opLeV0100001499 sgn|U224421 GATGTTGTTCATGTTTTACGTGCTGTTTTTGAAAACAGAAAAGAGTGGACATGGCAGTGTGCAGTTGTTG Experimental SGN-U574700 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|18419967|ref|NP_568377.1| (e_value=2e-70) sulfate transporter -related [Arabidopsis thaliana]; (*ATH) AT5G19600.1 (e_value=2e-72) Symbol: None | sulfate transporter, putative, similar to sulfate transporter (Arabidopsis thaliana) GI:2285885; contains Pfam profiles PF00916: Sulfate transporter family, PF01740: STAS domain; supporting cDNA gi:14141683:dbj:AB061739.1: | chr5:6612... ; (*SWP) sp|Q94LW6|SUT35_ARATH (e_value=2e-71) Probable sulfate transporter 3.5 OS=Arabidopsis thaliana GN=SULTR3;5; Solyc12g006960.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1385899-1392055 transcript_region:SL2.40ch12:1385899..1392055- go_terms:GO:0016020,GO:0016021 functional_description:"Sulfate transporter (AHRD V1 ***- Q0WVG5_ARATH); contains Interpro domain(s) IPR001902 Sulphate anion transporter " 1 4 12 18 opLeV0100001500 sgn|U225408 GGCAAATTGGCTTTGGTATCCCTGTTATACTCATGGTTTTGTCTGTCTCAACGTTCCTAATCGGTTCTTC Experimental SGN-U578210 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|157339504|emb|CAO44045.1| (e_value=4e-171) unnamed; (*ATH) AT1G52190.1 (e_value=3e-146) | Symbol: None | proton-dependent oligopeptide transport (POT) family protein, contains Pfam profile: PF00854 POT family | chr1:19438192-19442640 FORWARD | Aliases: F9I5.4, F9I5_4; (*SWP) sp|Q9M817|PTR2X_ARATH (e_value=3e-145) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190; Solyc05g005950.2.1 genomic_reference:SL2.40ch05 gene_region:717668-720026 transcript_region:SL2.40ch05:717668..720026- go_terms:GO:0080054,GO:0042936 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region " 1 2 12 18 opLeV0100001501 sgn|U231502 TGCTCGTACATGTAGCACGAAAGCCCCAGCTCTTCTCCTCCCATCTCAGGCTCTTCTGGTTCCATTTGAC Experimental SGN-U579479 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|118485798|gb|ABK94747.1| (e_value=0) unknown; (*ATH) AT4G16120.1 (e_value=0) | Symbol: None | phytochelatin synthetase-related, contains Pfam PF04833: Phytochelatin synthetase-like conserved region; supporting cDNA gi:26449620:dbj:AK117261.1: | chr4:9116313-9119325 REVERSE | Aliases: DL4100C, FCAALL.104; (*SWP) sp|Q8GZ17|COBL7_ARATH (e_value=0) COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7; Solyc01g065530.2.1 genomic_reference:SL2.40ch01 gene_region:64199720-64202838 transcript_region:SL2.40ch01:64199720..64202838+ functional_description:"COBRA-like protein (AHRD V1 ***- Q655F2_ORYSJ); contains Interpro domain(s) IPR006918 Glycosyl-phosphatidyl inositol-anchored, plant " 1 8 16 18 opLeV0100001502 sgn|U234488 AAGAACTTTGAAGGTCTTATATCAACTGTAGCTGTTTCTGACAAAGGCTCAAATGTTGAAGCTTACGCTG Experimental SGN-U589102 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147789144|emb|CAN60339.1| (e_value=4e-88) hypothetical; (*ATH) AT3G14150.1 (e_value=2e-81) Symbol: None | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative, similar to (S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate oxidase, GOX) (Short chain alpha-hydroxy... ; (*SWP) sp|P05414|GOX_SPIOL (e_value=1e-60) Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea; Solyc03g122140.2.1 genomic_reference:SL2.40ch03 gene_region:64135516-64138456 transcript_region:SL2.40ch03:64135516..64138456- go_terms:GO:0008891 functional_description:"L-lactate dehydrogenase (AHRD V1 ***- B2WEY8_PYRTR); contains Interpro domain(s) IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent " 1 6 16 18 opLeV0100001503 sgn|U217502 GAGAACAATCAATGTCAATAGTCCCGGCTGTTTGTTTCTCGAACCAATCGTTCCCCTTAGGCTGTCCAAC Experimental SGN-U577442 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|118487585|gb|ABK95618.1| (e_value=2e-80) unknown; (*ATH) AT2G46210.1 (e_value=5e-81) | Symbol: None | delta-8 sphingolipid desaturase, putative, similar to delta-8 sphingolipid desaturase GI:3819708 from (Brassica napus) | chr2:18984417-18986074 FORWARD | Aliases: T3F17.14; (*SWP) sp|Q9M4B5|PFD4_ARATH (e_value=2e-42) Probable prefoldin subunit 4 OS=Arabidopsis thaliana GN=API3; Solyc10g011810.2.1 genomic_reference:SL2.40ch10 gene_region:4042221-4043855 transcript_region:SL2.40ch10:4042221..4043855- go_terms:GO:0004768,GO:0042284 functional_description:"Fatty acid delta-6 desaturase (AHRD V1 **** Q84KG6_9ERIC); contains Interpro domain(s) IPR012171 Fatty acid/sphingolipid desaturase " 1 4 16 18 opLeV0100001504 sgn|U228261 TACTTTGTTCCCGATTCTATGTCAGTGTGGAACCTTCTTAGAGAGTTCCGCATCAGAAAGGTACACATGG Experimental SGN-U582430 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157337797|emb|CAO38841.1| (e_value=5e-110) unnamed; (*ATH) AT3G13070.1 (e_value=6e-112) Symbol: None | CBS domain-containing protein / transporter associated domain-containing protein, similar to SP:Q54318 Hemolysin C (Serpulina hyodysenteriae) {Treponema hyodysenteriae}; contains Pfam profiles PF00571: CBS domain, PF03471: Transporter... ; (*SWP) sp|Q54318|HLYC_TREHY (e_value=1e-28) Hemolysin C OS=Treponema hyodysenteriae GN=tlyC; Solyc07g065310.2.1 genomic_reference:SL2.40ch07 gene_region:64344445-64352893 transcript_region:SL2.40ch07:64344445..64352893- functional_description:"Magnesium and cobalt efflux protein corC (AHRD V1 *--- Q7P7S7_FUSNV); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 " 1 8 20 18 opLeV0100001505 sgn|U230335 TCAGAAAAGATAGAGGGCGGCAAAGAAGATCTTATTAAGGTGTCCAATGGCGAGATAGGTCAGACGGAGC Experimental SGN-U586598 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147862641|emb|CAN81488.1| (e_value=3e-28) hypothetical; Solyc07g043320.2.1 genomic_reference:SL2.40ch07 gene_region:54338081-54344479 transcript_region:SL2.40ch07:54338081..54344479+ go_terms:GO:0000166 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009053 Prefoldin " 1 6 20 18 opLeV0100001506 sgn|U220888 AACAATTACCGTGAGTGAGGACCCAGAAACAATATCCTGGGAGCATTTCTGTCAATCAAAGCTCTCACCT Experimental SGN-U565884 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157345492|emb|CAO14790.1| (e_value=6e-115) unnamed; (*ATH) AT5G14790.1 (e_value=1e-93) | Symbol: None | expressed protein | chr5:4782949-4785808 FORWARD | Aliases: T9L3.90, T9L3_90; Solyc02g086940.2.1 genomic_reference:SL2.40ch02 gene_region:44106511-44108900 transcript_region:SL2.40ch02:44106511..44108900+ go_terms:GO:0005488 functional_description:"FAM179B protein (Fragment) (AHRD V1 *--- Q6P183_HUMAN); contains Interpro domain(s) IPR016024 Armadillo-type fold " 1 4 20 18 opLeV0100001507 sgn|U216549 GTGGAGCCCAGCACTAACTCTCAAGACAGCTCTCCTTTCTATACAAGCATTACTTTCTGCTCCTGAACCT Experimental SGN-U582847 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|886679|emb|CAA58111.1| (e_value=9e-108) ubiquitin conjugating enzyme [Lycopersicon esculentum]; (*ATH) AT5G50870.1 (e_value=3e-81) Symbol: None | ubiquitin-conjugating enzyme, putative, strong similarity to ubiquitin conjugating enzyme (Lycopersicon esculentum) GI:886679; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme | chr5:20716709-20718302 REVERSE | Aliases: K3K... ; (*SWP) sp|Q9FI61|UBC27_ARATH (e_value=3e-80) Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27; Solyc06g072570.2.1 genomic_reference:SL2.40ch06 gene_region:41145493-41149587 transcript_region:SL2.40ch06:41145493..41149587+ go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 1 (AHRD V1 **** UBC1_SCHPO); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote IPR000608 Ubiquitin-conjugating enzyme, E2 " 1 2 20 18 opLeV0100001508 sgn|U228373 TTTATCTGAATCAGCTTGCACATCTTTAGATGAAGGTATATCATCTGAAGTCTTGTGTCTGGAGTGTTCC Experimental SGN-U572477 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157336739|emb|CAO71424.1| (e_value=6e-175) unnamed; (*ATH) AT3G23340.1 (e_value=2e-155) | Symbol: CKL10 | casein kinase, putative, similar to casein kinase I (Arabidopsis thaliana) gi:1197461:emb:CAA55396 | chr3:8350810-8353966 FORWARD | Aliases: MLM24.21, CKL10; (*SWP) sp|P42158|KC1D_ARATH (e_value=9e-132) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100; Solyc09g066440.2.1 genomic_reference:SL2.40ch09 gene_region:60450504-60459771 transcript_region:SL2.40ch09:60450504..60459771- go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 3 8 12 18 opLeV0100001509 sgn|U213533 GAGACTTTCGCTCACAGATATCAAAATTGACATTAGTAGAATCCCGAAGAAGAAGACCCTCATTGCTGCT Experimental SGN-U578385 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|76161008|gb|ABA40467.1| (e_value=1e-65) glycoprotein-like protein [Solanum tuberosum]; (*ATH) AT2G20450.1 (e_value=8e-61) | Symbol: None | 60S ribosomal protein L14 (RPL14A) | chr2:8820947-8822332 FORWARD | Aliases: T13C7.4, T13C7_4; (*SWP) sp|Q9SIM4|RL141_ARATH (e_value=7e-60) 60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A; Solyc06g083820.2.1 genomic_reference:SL2.40ch06 gene_region:45415855-45418135 transcript_region:SL2.40ch06:45415855..45418135+ go_terms:GO:0003735,GO:0003723 functional_description:"60 ribosomal protein L14 (AHRD V1 ***- B6TMP6_MAIZE); contains Interpro domain(s) IPR002784 Ribosomal protein L14 " 3 6 12 18 opLeV0100001510 sgn|U235685 AGCTCGCTGATTAATATATCGTGTATGGTCAAAATTGAGTGTCAACACTTACTTTAAAATTTAAGTCCCT Experimental SGN-U604771 Tomato 200607#2 [1 ESTs aligned] \N \N 3 4 12 18 opLeV0100001511 sgn|U221115 AGGGGTTGATGACCAGCAGCTCGCACGATTGGTATAGCAATTGGACCCATTATAGTTGCCAAGCCAAGAT Experimental SGN-U582034 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157360168|emb|CAO69357.1| (e_value=3e-75) unnamed; (*ATH) AT4G23740.1 (e_value=1e-65) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, receptor-like protein kinase - Arabidopsis thaliana RKL1, PID:g4008006 | chr4:12366472-12369348 FORWARD | Aliases: F9D16.210, F9D16_210; (*SWP) sp|Q9SUQ3|Y4374_ARATH (e_value=1e-64) Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740; \N \N 3 2 12 18 opLeV0100001512 sgn|U215148 GATAAGTTTGTTGTTGTGGTCGATGATTCGAAGCTTGTTTCGGGTCTTGGTGGATCCGGGTTGGCTATGC Experimental SGN-U594050 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157352045|emb|CAO43035.1| (e_value=4e-70) unnamed; (*ATH) AT3G04790.1 (e_value=9e-64) | Symbol: None | ribose 5-phosphate isomerase-related, similar to ribose-5-phosphate isomerase GI:18654317 from (Spinacia oleracea) | chr3:1313324-1314369 FORWARD | Aliases: F7O18.28, F7O18_28; (*SWP) sp|Q9ZU38|RPIA_ARATH (e_value=1e-52) Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290; Solyc01g097460.2.1 genomic_reference:SL2.40ch01 gene_region:80067637-80074843 transcript_region:SL2.40ch01:80067637..80074843+ go_terms:GO:0009052 functional_description:"Ribose-5-phosphate isomerase (AHRD V1 ***- A8IRQ1_CHLRE); contains Interpro domain(s) IPR004788 Ribose 5-phosphate isomerase " 3 8 16 18 opLeV0100001513 sgn|U217431 CATTCACGCACCAAAGAACCAGAGAAAATCATTCGCGAAGCAGACATTATCATTGCTGCCGCAGGACAGG Experimental SGN-U569834 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|157350039|emb|CAO39977.1| (e_value=1e-135) unnamed; (*ATH) AT3G12290.1 (e_value=1e-127) Symbol: None | tetrahydrofolate dehydrogenase/cyclohydrolase, putative, similar to SP:P07245 C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF synthase) (Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclo... ; (*SWP) sp|A5GAM5|FOLD_GEOUR (e_value=2e-73) Bifunctional protein folD OS=Geobacter uraniireducens (strain Rf4) GN=folD; Solyc10g080970.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61467340-61472069 transcript_region:SL2.40ch10:61467340..61472069+ go_terms:GO:0009396,GO:0008152 functional_description:"FolD bifunctional protein (AHRD V1 ***- B6TJF9_MAIZE); contains Interpro domain(s) IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase " 3 6 16 18 opLeV0100001514 sgn|U222286 CACATTTTCATCCGAGAGCAACAGAGACTGCATTCGTGCTCGAGGGGAAGATTTATTCAGGGTTTGTTGA Experimental SGN-U569668 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157346224|emb|CAO15921.1| (e_value=2e-66) unnamed; (*ATH) AT3G10080.1 (e_value=3e-67) | Symbol: None | germin-like protein, putative, similar to germin-like protein 2 (Oryza sativa) GI:2655287 | chr3:3107281-3108182 REVERSE | Aliases: T22K18.9; (*SWP) sp|Q9SR72|GL32_ARATH (e_value=2e-66) Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080; Solyc11g006980.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1485191-1485829 transcript_region:SL2.40ch11:1485191..1485829+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 18 (AHRD V1 ***- C7S8D2_SOYBN); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold " 3 4 16 18 opLeV0100001515 sgn|U225200 TGGTTCGATTTCGGCCACGATCAGGTTTTTGCTTACCTGTTGCTGTCGGCGGGATCGGCAGCAACGTCAC Experimental SGN-U570336 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157344292|emb|CAO69225.1| (e_value=1e-54) unnamed; (*ATH) AT3G55390.1 (e_value=5e-47) Symbol: None | integral membrane family protein, MtN24, Medicago truncatula, EMBL:MTY15290; contains TIGRFAM TIGR01569 : plant integral membrane protein TIGR01569; contains Pfam PF04535 : Domain of unknown function (DUF588) | chr3:20545592-20546658 ... ; (*SWP) sp|Q9M2U0|U497M_ARATH (e_value=4e-46) UPF0497 membrane protein At3g55390 OS=Arabidopsis thaliana GN=At3g55390; Solyc04g011420.2.1 genomic_reference:SL2.40ch04 gene_region:3881797-3883525 transcript_region:SL2.40ch04:3881797..3883525- functional_description:"UPF0497 membrane protein 2 (AHRD V1 ***- U4972_POPTR); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup " 3 8 20 18 opLeV0100001516 sgn|U231452 GGCTCAGTGATTGTGAAGCTGCCTCTATTCTTGAAAGGTCCTTCCCTTCAAATCTGATCATAAGAGGGCC Experimental SGN-U565112 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|14423558|gb|AAK62461.1|AF387016_1 (e_value=2e-176) putative; (*ATH) AT5G03430.1 (e_value=2e-178) Symbol: None | phosphoadenosine phosphosulfate (PAPS) reductase family protein, low similarity to SP:P38913 FAD synthetase (EC 2.7.7.2) {Saccharomyces cerevisiae}; contains Pfam profiles PF01507: Phosphoadenosine phosphosulfate reductase family, PF0... ; (*SWP) sp|Q8NFF5|FAD1_HUMAN (e_value=3e-39) FAD synthetase OS=Homo sapiens GN=FLAD1; Solyc10g083960.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62978820-62988839 transcript_region:SL2.40ch10:62978820..62988839+ go_terms:GO:0008152,GO:0006777 functional_description:"Phosphoadenosine phosphosulfate reductase domain containing protein (AHRD V1 *--- C5PEQ4_COCP7); contains Interpro domain(s) IPR002500 Phosphoadenosine phosphosulphate reductase " 3 6 20 18 opLeV0100001517 sgn|U215878 CGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGG Experimental SGN-U576453 Tomato 200607#2 [10 ESTs aligned] \N \N 3 4 20 18 opLeV0100001518 sgn|U222713 CCATGCCAACAATAGTAGCACTAAACTTTCAAAAGAAGAGAGATGAGATCAAGCTTTGAAGTGGGTAGCT Experimental SGN-U586011 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157329149|emb|CAO24574.1| (e_value=1e-77) unnamed; (*ATH) AT5G66050.1 (e_value=9e-70) | Symbol: None | expressed protein | chr5:26429315-26431762 REVERSE | Aliases: K2A18.12, K2A18_12; \N \N 3 2 20 18 opLeV0100001519 sgn|U222909 TGATGAAGAAATCTGCTCGCCAAATGGCCAAAAGTGCTACACCTGTGGAACAACTGCGCCAAGCAATACA Experimental SGN-U585184 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157329306|emb|CAO39787.1| (e_value=5e-90) unnamed; (*ATH) AT2G32950.1 (e_value=5e-81) | Symbol: None | COP1 regulatory protein, photomorphogenesis repressor; identical to COP1 regulatory protein/FUSCA protein FUS1 GI:402685 SP:P43254 | chr2:13985019-13990608 FORWARD | Aliases: T21L14.11, T21L14_11; (*SWP) sp|P93471|COP1_PEA (e_value=3e-81) E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1; Solyc11g011980.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4927052-4931762 transcript_region:SL2.40ch11:4927052..4931762- go_terms:GO:0008270 functional_description:"WD-40 repeat protein (AHRD V1 *--- B2J557_NOSP7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region " 1 3 9 18 opLeV0100001520 sgn|U217207 TAGGGCGAATAGCTCGTTGTCCCCTTCGTTTTATAGTGTCGTTGAAGAACTGGTAATCGTATTTTGTGTC Experimental SGN-U582597 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|4589834|dbj|BAA76895.1| (e_value=6e-178) LeArcA1 protein [Lycopersicon esculentum]; (*ATH) AT1G48630.1 (e_value=2e-155) Symbol: None | guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative, contains 7 WD-40 repeats (PF00400); very similar to guanine nucleotide-binding protein; activated protein kinase C receptor; R... ; (*SWP) sp|P49026|GBLP_TOBAC (e_value=6e-175) Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA; \N \N 1 1 9 18 opLeV0100001521 sgn|U219490 CTCAGGTTTCCTAAAGTTCCTGCAGTGGAGGATCCGGATACAGCTATCCTGGGTAACACCAACTTCCCGT Experimental SGN-U582306 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|15230911|ref|NP_191358.1| (e_value=3e-69) expressed protein [Arabidopsis thaliana]; (*ATH) AT3G57990.1 (e_value=2e-71) | Symbol: None | expressed protein | chr3:21480979-21482463 REVERSE | Aliases: T10K17.200; Solyc10g080470.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61057242-61058297 transcript_region:SL2.40ch10:61057242..61058297- functional_description:"Unknown Protein (AHRD V1)" 1 7 13 18 opLeV0100001522 sgn|U219812 GTGGACCTTGATCCCAACTCTTCATCGTGACCCTGACATATGGGGACGAGATGCCAATGAATTCAAGCCA Experimental SGN-U583747 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157351131|emb|CAO41318.1| (e_value=1e-119) unnamed; (*ATH) AT5G24910.1 (e_value=5e-102) Symbol: None | cytochrome P450 family protein, similar to Cytochrome P450 72A1 (SP:Q05047) (Catharanthus roseus); similar to fatty acid omega-hydroxylase cytochrome P450 4A11 - Homo sapiens, PIR:I53015; supported by cDNA: gi_16604323_gb_AY058060.1_ ... ; (*SWP) sp|Q05047|C72A1_CATRO (e_value=5e-49) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1; Solyc03g095310.2.1 genomic_reference:SL2.40ch03 gene_region:49777121-49783215 transcript_region:SL2.40ch03:49777121..49783215- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450" 1 5 13 18 opLeV0100001523 sgn|U224988 GAAAGATCAAATAAATCGCGAGCATGGAAGCCAGTTTTGTCTACCATTAGAGAATGGTCGTTTAATAGGA Experimental SGN-U565058 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|147777381|emb|CAN67198.1| (e_value=6e-34) hypothetical; \N \N 1 3 13 18 opLeV0100001524 sgn|U219468 GAAAGGTGTTTGTGACAAGGGACATACAGAAGACTTACGCGCAATGTACAGAGAATGGCCCTTCTTCCAG Experimental SGN-U570998 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|149789412|gb|ABR29877.1| (e_value=0) phosphoenolpyruvate; (*ATH) AT1G68750.1 (e_value=0) Symbol: None | phosphoenolpyruvate carboxylase family protein / PEP carboxylase family protein, similar to SP:P51059 Phosphoenolpyruvate carboxylase 2 (EC 4.1.1.31) (PEPCASE) {Zea mays}; contains Pfam profile PF00311: phosphoenolpyruvate carboxylase... ; (*SWP) sp|Q8GVE8|CAPP4_ARATH (e_value=0) Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis thaliana GN=PPC4; Solyc04g006970.2.1 genomic_reference:SL2.40ch04 gene_region:663594-674845 transcript_region:SL2.40ch04:663594..674845- go_terms:GO:0005515,GO:0008964 functional_description:"Phosphoenolpyruvate carboxylase (AHRD V1 **** A6YM33_RICCO); contains Interpro domain(s) IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core " 1 1 13 18 opLeV0100001525 sgn|U229669 GCCTTTAATCATGGGGCTCCCTCCAGAGACAGCACGACCCCTACCAAGAGAAAAAGTAGGGGTAGCACCA Experimental SGN-U569285 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157335341|emb|CAO61171.1| (e_value=1e-42) unnamed; (*ATH) AT5G42950.1 (e_value=6e-37) | Symbol: None | GYF domain-containing protein, contains Pfam profile: PF02213 GYF domain | chr5:17241664-17248583 FORWARD | Aliases: MBD2.15, MBD2_15; Solyc04g080240.2.1 genomic_reference:SL2.40ch04 gene_region:62073311-62083188 transcript_region:SL2.40ch04:62073311..62083188- functional_description:"PERQ amino acid-rich with GYF domain-containing protein 2 (AHRD V1 *-*- PERQ2_MOUSE); contains Interpro domain(s) IPR003169 GYF " 1 7 17 18 opLeV0100001526 sgn|U241900 TGGGAAGAAACTACACTAAAAGAAAACCACCGTTCATGTTGTAAACCTCCGTAAGTCCACGTTAAGAAAA Experimental SGN-U587540 Tomato 200607#2 [1 ESTs aligned] \N \N 1 5 17 18 opLeV0100001527 sgn|U229379 TGGAGCTATGAAGTTTCCTTTCACAAATACCACCAACCCTGAGTGTGGATTATGCAGGTTTGATTGTCAT Experimental SGN-U573541 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147852668|emb|CAN81685.1| (e_value=8e-17) hypothetical; Solyc05g008940.2.1 genomic_reference:SL2.40ch05 gene_region:3148903-3152133 transcript_region:SL2.40ch05:3148903..3152133+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM25_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 1 3 17 18 opLeV0100001528 sgn|U222963 GACCGAATAGAGGACGAGGGGGGCGTTGGTAAGGGAAACGGAAGATGTAGTAGGTATTATTCTAGTGCAA Experimental SGN-U581963 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|147865124|emb|CAN79835.1| (e_value=4e-104) hypothetical; (*ATH) AT3G50930.1 (e_value=4e-98) | Symbol: None | AAA-type ATPase family protein, contains Pfam profile: ATPase family PF00004 | chr3:18940507-18942820 FORWARD | Aliases: F18B3.210; (*SWP) sp|Q9P6Q3|BCS1_SCHPO (e_value=4e-30) Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe GN=SPAC644.07; Solyc02g084900.2.1 genomic_reference:SL2.40ch02 gene_region:42534523-42536479 transcript_region:SL2.40ch02:42534523..42536479- go_terms:GO:0016887 functional_description:"Cell division protease ftsH homolog (AHRD V1 *--- FTSH_BACPE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core " 1 1 17 18 opLeV0100001529 sgn|U226444 AAAAGTTGAGCAGAAGATGCTTGGCTGGGGTGGTCGGGATGACTCAAAGATATTGGTTCCAGCTACTGTT Experimental SGN-U565548 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|15237311|ref|NP_197130.1| (e_value=2e-143) RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]; (*ATH) AT5G16260.1 (e_value=1e-145) Symbol: None | RNA recognition motif (RRM)-containing protein, similar to Tat-SF1 - Homo sapiens, GI:1667611; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) | chr5:5311210-5315770 FORWARD | Aliases: T21H19.... ; (*SWP) sp|Q8BGC0|HTSF1_MOUSE (e_value=1e-38) HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1; Solyc11g008700.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2876416-2885934 transcript_region:SL2.40ch11:2876416..2885934- go_terms:GO:0003676,GO:0000166 functional_description:"Splicing factor U2AF-associated protein (AHRD V1 *--- C0NKB4_AJECG); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait " 3 7 9 18 opLeV0100001530 sgn|U213683 GCAGTGGCGTTATTGGGTTTCTTCTGTGCTCAACTGAGGGACCATTTGTT Experimental SGN-U593751 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|33150481|gb|AAP97136.1| (e_value=7e-37) putative spermine synthase [Lycopersicon esculentum]; (*ATH) AT5G53120.1 (e_value=1e-33) Symbol: None | spermidine synthase, putative / putrescine aminopropyltransferase, putative, similar to SP:O82147 Spermidine synthase (EC 2.5.1.16) (Putrescine aminopropyltransferase) (SPDSY) {Coffea arabica}; contains Pfam profile PF01564: Spermine/... ; (*SWP) sp|Q9ZUB3|SPD1_ARATH (e_value=2e-24) Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1; \N \N 3 5 9 18 opLeV0100001531 sgn|U215236 CACTCGTTCCTAAAAAAGACGGAGTTGAAGTTCATTGCGTTGGCTGTCGTCAATCGAGTGGTTGTCACAC Experimental SGN-U583902 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|15224871|ref|NP_181966.1| (e_value=1e-21) CHP-rich zinc finger protein, putative [Arabidopsis thaliana]; (*ATH) AT2G44380.1 (e_value=1e-23) | Symbol: None | DC1 domain-containing protein, highly similar to GP:2435515:AF024504; contains Pfam profile PF03107: DC1 domain | chr2:18330666-18331504 REVERSE | Aliases: F4I1.19; Solyc02g068680.1.1 evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:33202425-33203810 transcript_region:SL2.40ch02:33202425..33203810+ go_terms:GO:0023034,GO:0008270 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 **-- Q9FK70_ARATH); contains Interpro domain(s) IPR011424 C1-like " 3 3 9 18 opLeV0100001532 sgn|U223126 TGAAGGCTACTATGGTAGATCCAAGACTCGCGGGAGTTGTGAAATTCGCATGTACCACCCCAATGAGTAC Experimental SGN-U572782 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|125555316|gb|EAZ00922.1| (e_value=2e-41) hypothetical; (*ATH) AT4G17690.1 (e_value=6e-37) | Symbol: None | peroxidase, putative, similar to peroxidase (Spinacia oleracea) gi:1781336:emb:CAA71495 | chr4:9846140-9847120 FORWARD | Aliases: DL4880W, FCAALL.96; (*SWP) sp|P22196|PER2_ARAHY (e_value=2e-36) Cationic peroxidase 2 OS=Arachis hypogaea GN=PNC2; Solyc05g013350.2.1 genomic_reference:SL2.40ch05 gene_region:6440494-6442318 transcript_region:SL2.40ch05:6440494..6442318+ go_terms:GO:0004601 functional_description:"Peroxidase 1 (AHRD V1 **** B6T173_MAIZE); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial " 3 1 9 18 opLeV0100001533 sgn|U221871 TTACCCACCAGATTTTCGCCGGAGAAGATGGCGGAGTTAGCTGTGTTGATTGATCTGATTCTACCGTTTT Experimental SGN-U562978 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|157348120|emb|CAO22830.1| (e_value=7e-165) unnamed; (*ATH) AT2G18280.1 (e_value=4e-133) Symbol: None | tubby-like protein 2 (TULP2), identical to tubby-like protein 2 (GI:27372512) {Arabidopsis thaliana}; similar to phosphodiesterase (GI:467578) (Mus musculus); similar to Tubby related protein 2 (Tubby-like protein 2) (P4-6 protein) (F... ; (*SWP) sp|Q8GVE5|TLP2_ARATH (e_value=3e-132) Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2; \N \N 3 7 13 18 opLeV0100001534 sgn|U223907 CTGCATACAGAGAGCGGGTGGGCATGCTTCTGATGAAGCTCTTGATCGTCTGCCGACATCAGCTACTTGC Experimental SGN-U568001 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157353066|emb|CAO44956.1| (e_value=5e-100) unnamed; (*ATH) AT3G17205.1 (e_value=8e-98) Symbol: UPL6 | similar to HECT-domain-containing protein / ubiquitin-transferase family protein / IQ calmodulin-binding motif-containing protein [Arabidopsis thaliana] (TAIR:At3g53090.1); similar to hypothetical protein [Gallus gallus] (GB:CAG30948.... ; (*SWP) sp|Q8RWB8|UPL6_ARATH (e_value=7e-97) E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6; Solyc01g057900.2.1 genomic_reference:SL2.40ch01 gene_region:57041756-57078903 transcript_region:SL2.40ch01:57041756..57078903- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase (AHRD V1 *-** Q17BV9_AEDAE); contains Interpro domain(s) IPR000569 HECT " 3 5 13 18 opLeV0100001535 sgn|U240031 CCCTAAGGAATTCCCCAGTTTTTTCCCGCCGGGGCCACCCCCTGCCACTTGTAAAAAACCTGCCGCCCCT Experimental SGN-U598556 Tomato 200607#2 [1 ESTs aligned] \N \N 3 3 13 18 opLeV0100001536 sgn|U216209 TTCCAAGATAGATTTAGTGGTCCAAACTATGACATATGACCGCAGGTGTAGCTACATTGGAGTTAGAGGG Experimental \N \N \N \N 3 1 13 18 opLeV0100001537 sgn|U227317 CAACAAAAGGTAATGTGCAACAACAAGCTGCAGATACCGCTAAAGGTGATGTCCAAGAACTCACTCCAGC Experimental SGN-U572460 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157341615|emb|CAO62170.1| (e_value=1e-80) unnamed; (*ATH) AT4G17720.1 (e_value=1e-74) | Symbol: None | RNA recognition motif (RRM)-containing protein | chr4:9862459-9864676 REVERSE | Aliases: DL4895C, FCAALL.73; Solyc06g072770.2.1 genomic_reference:SL2.40ch06 gene_region:41263197-41266916 transcript_region:SL2.40ch06:41263197..41266916+ go_terms:GO:0003676,GO:0000166,GO:0055114 functional_description:"RNA recognition motif-containing protein (AHRD V1 **-- D7M9G3_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase " 3 7 17 18 opLeV0100001538 sgn|U222889 TACGGGAGGTCAGGTTTATCTCACACTACAATTGCTGGTTCAGTCTTGCACGGCATGAAAGAGATAGAGG Experimental SGN-U563584 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|3819676|emb|CAA09882.1| (e_value=9e-118) ER auxin binding protein 1 [Lycopersicon esculentum]; (*ATH) AT4G02980.1 (e_value=1e-72) | Symbol: None | auxin-binding protein 1 (ABP1), identical to Auxin-binding protein 1 precursor (ABP) (Swiss-Prot:P33487) (Arabidopsis thaliana) | chr4:1319656-1321477 REVERSE | Aliases: T4I9.14, T4I9_14; (*SWP) sp|P33491|ABP2_TOBAC (e_value=9e-99) Auxin-binding protein T92 OS=Nicotiana tabacum GN=T92; Solyc06g084390.2.1 genomic_reference:SL2.40ch06 gene_region:45813049-45815938 transcript_region:SL2.40ch06:45813049..45815938- go_terms:GO:0005515 functional_description:"ER auxin binding protein 1 (AHRD V1 **** Q9ZRX6_SOLLC); contains Interpro domain(s) IPR000886 Endoplasmic reticulum, targeting sequence " 3 3 17 18 opLeV0100001539 sgn|U225935 TTGTTACGTGTGCTATGAACCTAGCAAGAATGGCACAATGCATGTATCAGCATGGTGATGGCCATGGCGG Experimental SGN-U565148 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|145666652|gb|ABP88782.1| (e_value=2e-96) plastid; (*ATH) AT3G25810.1 (e_value=2e-57) | Symbol: None | myrcene/ocimene synthase, putative, similar to GI:9957293; contains Pfam profile: PF01397 terpene synthase family | chr3:9432042-9435081 FORWARD | Aliases: K13N2.7; (*SWP) sp|O81191|SCS_SALOF (e_value=1e-52) 1,8-cineole synthase, chloroplastic OS=Salvia officinalis; \N \N 3 1 17 18 opLeV0100001540 sgn|U226458 CTGGAGCAACTACATCCATGCTCCTTTATCACTTGGACTATGCAAGGACTCGGCTGGCGATGGATGCTCA Experimental SGN-U564500 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157356282|emb|CAO62434.1| (e_value=3e-102) unnamed; (*ATH) AT5G17400.1 (e_value=1e-102) Symbol: None | ADP, ATP carrier protein, mitochondrial, putative / ADP/ATP translocase, putative / adenine nucleotide translocator, putative, similar to SWISS-PROT:Q09188 ADP,ATP carrier protein (ADP/ATP translocase) (Schizosaccharomyces pombe); con... ; (*SWP) sp|P31691|ADT_ORYSJ (e_value=9e-86) ADP,ATP carrier protein, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0718900; Solyc06g069410.2.1 genomic_reference:SL2.40ch06 gene_region:39556556-39559850 transcript_region:SL2.40ch06:39556556..39559850+ go_terms:GO:0005471 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 **** Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 " 1 7 10 18 opLeV0100001541 sgn|U216346 AACTCGAGACTAGTTCTCTCGGCACGAGGGTTGCCTCTTTTGAAACCCCT Experimental \N \N \N \N 1 5 10 18 opLeV0100001542 sgn|U220342 ATCAAGAGTCCACTAAACGTTTTGCCACACATCCATTTACTCCCACAGCTCTACAAAATGCTCTGACATC Experimental SGN-U585551 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|46367701|dbj|BAD15363.1| (e_value=0) nitrite reductase [Nicotiana tabacum]; (*ATH) AT2G15620.1 (e_value=0) Symbol: None | ferredoxin--nitrite reductase, putative, strong similarity to ferredoxin--nitrite reductase (Nicotiana tabacum) GI:19893; contains Pfam profiles PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain, PF01077: Nitrite and sulp... ; (*SWP) sp|P38500|NIR_BETVE (e_value=0) Ferredoxin--nitrite reductase, chloroplastic OS=Betula verrucosa GN=NIR1; Solyc01g108630.2.1 genomic_reference:SL2.40ch01 gene_region:87640633-87643378 transcript_region:SL2.40ch01:87640633..87643378+ go_terms:GO:0005515 functional_description:"Nitrite reductase (AHRD V1 ***- Q76KB0_TOBAC); contains Interpro domain(s) IPR006067 Nitrite and sulphite reductase 4Fe-4S region " 1 3 10 18 opLeV0100001543 sgn|U227400 ATATTGGTAACCACCTCAGAGATGTATGACTTGGTAGACTTCCCTGTTCTTCTTCTTTCTTCAGCTGGTA Experimental SGN-U563811 Tomato 200607#2 [3 ESTs aligned] \N \N 1 1 10 18 opLeV0100001544 sgn|U216584 CACGGACTTCACATTCATGACATCGTTGAGGGTAATGGTGGAATGGTTCGGGATGCTGTTGACCATATTG Experimental SGN-U563599 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|125889|sp|P15722|PEL59_SOLLC (e_value=0) RecName:; (*ATH) AT1G14420.1 (e_value=4e-148) | Symbol: None | pectate lyase family protein, similar to pectate lyase P59 SP:P15722 from (Lycopersicon esculentum) | chr1:4931774-4933400 REVERSE | Aliases: F14L17.19, F14L17_19; (*SWP) sp|P15722|PEL59_SOLLC (e_value=0) Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59; Solyc03g058890.2.1 genomic_reference:SL2.40ch03 gene_region:23968073-23970799 transcript_region:SL2.40ch03:23968073..23970799+ go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7LQ55_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen " 1 7 14 18 opLeV0100001545 sgn|U226277 ACCACCCCGAAAAGCACGCACCAGCACACGAGAAGGGTGCAAGGCAATGATGTTGGTAAAGATTAACAAG Experimental SGN-U583029 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147864082|emb|CAN81119.1| (e_value=5e-69) hypothetical; (*ATH) AT2G43280.1 (e_value=2e-43) Symbol: None | far-red impaired responsive family protein / FAR1 family protein, weak similarity to far-red impaired response protein (Arabidopsis thaliana) GI:5764395; contains Pfam profile PF03101: FAR1 family | chr2:17996775-17998099 FORWARD | Al... ; Solyc09g057880.2.1 genomic_reference:SL2.40ch09 gene_region:47291339-47302811 transcript_region:SL2.40ch09:47291339..47302811+ functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 *--- FRS5_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related " 1 5 14 18 opLeV0100001546 sgn|U219358 AGATATTCAGATGTTGCTGACTGGGTAGAGAATCGAATGCCTAAGACCCTCGTGTTTAAACAAACAGGAC Experimental SGN-U574278 Tomato 200607#2 [11 ESTs aligned] \N \N 1 3 14 18 opLeV0100001547 sgn|U215396 GATAGCAACCTGACTGAGGAGATCCTGGCAGCTGGTCCAAACTTCTAATTGAAGAAGGATTTGCCTGAGT Experimental SGN-U591069 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|16950587|gb|AAG01894.2| (e_value=8e-51) phosphoenolpyruvate carboxykinase [Lycopersicon esculentum]; (*ATH) AT4G37870.1 (e_value=1e-43) Symbol: None | phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putative, similar to phosphoenolpyruvate carboxykinase (Lycopersicon esculentum) GI:16950587, SP:Q9SLZ0 Phosphoenolpyruvate carboxykinase (ATP) (... ; (*SWP) sp|Q9T074|PEPCK_ARATH (e_value=1e-42) Phosphoenolpyruvate carboxykinase [ATP] OS=Arabidopsis thaliana GN=PCKA; Solyc04g076880.2.1 genomic_reference:SL2.40ch04 gene_region:59409918-59415730 transcript_region:SL2.40ch04:59409918..59415730+ go_terms:GO:0004612,GO:0042802 functional_description:"Phosphoenolpyruvate carboxykinase (AHRD V1 **** Q8W505_SOLLC); contains Interpro domain(s) IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising " 1 1 14 18 opLeV0100001548 sgn|U235368 TCTTGAACGATAGACTGCACCCATCTTGGCAAGTCAACACCTTCCTCGTTCAGGAGGGCATGAGTGGGTG Experimental SGN-U590757 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157343732|emb|CAO68238.1| (e_value=2e-42) unnamed; (*ATH) AT5G58300.1 (e_value=9e-33) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative | chr5:23589105-23592587 FORWARD | Aliases: MCK7.17, MCK7_17; (*SWP) sp|Q9LVM0|Y5830_ARATH (e_value=8e-32) Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300; Solyc03g118510.2.1 genomic_reference:SL2.40ch03 gene_region:61406457-61409311 transcript_region:SL2.40ch03:61406457..61409311+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK" 1 7 18 18 opLeV0100001549 sgn|U216561 TTGGTGGTTCAGTTGCTACCCAATCAAATGCATCTTTAGTTGCTACATTTCCCATTGCTAACCAAGAAGT Experimental SGN-U577285 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|61223199|gb|AAX40666.1| (e_value=2e-57) sesquiterpene; (*ATH) AT5G23960.1 (e_value=7e-28) | Symbol: None | Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in the stigma. | chr5:8092972-8095131 FORWARD | Aliases: MZF18.16, MZF18_16; (*SWP) sp|Q43714|DCS3_GOSAR (e_value=6e-30) (+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A; Solyc12g006570.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1067723-1072118 transcript_region:SL2.40ch12:1067723..1072118+ go_terms:GO:0016829,GO:0008152 functional_description:"Germacrene-D synthase (AHRD V1 ***- Q32W37_ACTDE); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain " 1 5 18 18 opLeV0100001550 sgn|U217664 CTGGTGCAACTCTTGAGAGGCTGTCTCTGTGCTGCCAATAGATTTTACTCCGACAATCTTTCAGATGTCC Experimental SGN-U563990 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|157340187|emb|CAO45864.1| (e_value=0) unnamed; (*ATH) AT3G16200.1 (e_value=0) | Symbol: None | expressed protein | chr3:5491412-5493635 REVERSE | Aliases: MYA6.1; Solyc03g120490.2.1 genomic_reference:SL2.40ch03 gene_region:62926123-62930230 transcript_region:SL2.40ch03:62926123..62930230+ functional_description:"Genomic DNA chromosome 3 P1 clone MYA6 (AHRD V1 ***- Q9LU25_ARATH)" 1 3 18 18 opLeV0100001551 sgn|U229999 ATAATCAGCATTATCCGTGGGCAACTCGTGGCGACAAACAGGACATGTATTACGGATATTTAGCCATGGC Experimental SGN-U566164 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|4651204|dbj|BAA77204.1| (e_value=3e-32) ring finger protein [Cicer arietinum]; (*ATH) AT3G02340.1 (e_value=8e-30) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 Zinc finger, C3HC4 type (RING finger) | chr3:477010-478449 FORWARD | Aliases: F11A12.3, F11A12_3; (*SWP) sp|Q6GPV5|RN181_XENLA (e_value=5e-19) RING finger protein 181 OS=Xenopus laevis GN=rnf181; Solyc02g089410.2.1 genomic_reference:SL2.40ch02 gene_region:45823534-45826227 transcript_region:SL2.40ch02:45823534..45826227+ go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- RNF13_CHICK); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type " 1 1 18 18 opLeV0100001552 sgn|U213629 TGTCAAAGGAATACCTACGAGTTGCACTTGATGTTCTTGCACCATCAGCTGGTTTACCTCCCATTGGTGC Experimental SGN-U580173 Tomato 200607#2 [61 ESTs aligned] (*GB) gi|3550661|emb|CAA04670.1| (e_value=0) 39 kDa EF-Hand containing protein [Solanum tuberosum]; (*ATH) AT4G38810.2 (e_value=1e-137) | Symbol: None | calcium-binding EF hand family protein, contains INTERPRO:IPR002048 calcium-binding EF-hand domain | chr4:18115277-18119071 REVERSE | Aliases: None; Solyc01g111040.2.1 genomic_reference:SL2.40ch01 gene_region:89209383-89212670 transcript_region:SL2.40ch01:89209383..89212670+ go_terms:GO:0005509 functional_description:"EF-Hand containing protein-like (AHRD V1 ***- Q9T0I9_ARATH); contains Interpro domain(s) IPR018248 EF hand " 3 7 10 18 opLeV0100001553 sgn|U230984 TGCTTCAGTAATAAAATTCTTTAGTGGTGACCGATAGGCTTTTTTCTACGAGCACCGGCAGACCTTTTGC Experimental SGN-U568888 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|157349209|emb|CAO24355.1| (e_value=3e-164) unnamed; (*ATH) AT5G63140.1 (e_value=8e-138) | Symbol: None | calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase | chr5:25345391-25347025 FORWARD | Aliases: MDC12.10, MDC12_10; (*SWP) sp|Q05924|DCR2_YEAST (e_value=4e-43) Phosphatase DCR2 OS=Saccharomyces cerevisiae GN=DCR2; Solyc11g066290.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49099350-49102726 transcript_region:SL2.40ch11:49099350..49102726- go_terms:GO:0009401,GO:0016787 functional_description:"Icc family phosphohydrolase (AHRD V1 **-- C6I6S4_9BACE); contains Interpro domain(s) IPR011230 Phosphoesterase At2g46880 " 3 5 10 18 opLeV0100001554 sgn|U213871 TAGCTAAAGGTGAAGAATTCGTGAAGAAAGCTGAGAAAAAACTAAGCGGTTGGGGACTGTTCGGCTCCAA Experimental SGN-U571365 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|18203271|sp|Q9M5P8|SNAA_SOLTU (e_value=1e-116) Alpha-soluble NSF attachment protein (Alpha-SNAP) (N-ethylmaleimide-sensitive factor attachment protein, alpha); (*ATH) AT3G56190.1 (e_value=8e-108) | Symbol: None | alpha-soluble NSF attachment protein 2 / alpha-SNAP2 / ASNAP2, identical to alpha-soluble NSF attachment protein 2 / alpha-SNAP2 SP:Q9SPE6 from (Arabidopsis thaliana) | chr3:20856653-20859505 REVERSE | Aliases: F18O21.150; (*SWP) sp|Q9M5P8|SNAA_SOLTU (e_value=7e-118) Alpha-soluble NSF attachment protein OS=Solanum tuberosum; Solyc05g052310.2.1 genomic_reference:SL2.40ch05 gene_region:61726403-61732455 transcript_region:SL2.40ch05:61726403..61732455+ go_terms:GO:0019905,GO:0005483 functional_description:"Alpha-soluble NSF attachment protein (AHRD V1 **** D2D2Z7_GOSHI); contains Interpro domain(s) IPR000744 NSF attachment protein " 3 3 10 18 opLeV0100001555 sgn|U216191 TCGCACTCCAATGGCGAGGCAATATAACACAATCATAGCGCAACAAAGAGAGCTTGAGTCCTACGAATCT Experimental SGN-U574600 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|30681457|ref|NP_187683.2| (e_value=4e-44) pectinesterase, putative [Arabidopsis thaliana]; (*ATH) AT3G10720.2 (e_value=4e-46) | Symbol: None | pectinesterase, putative, contains similarity to pectinesterase from Vitis vinifera GI:15081598, Prunus persica SP:Q43062; contains Pfam profile PF01095 pectinesterase | chr3:3354487-3357619 REVERSE | Aliases: None; (*SWP) sp|O04887|PME2_CITSI (e_value=2e-41) Pectinesterase-2 OS=Citrus sinensis GN=PECS-2.1; Solyc01g067420.2.1 genomic_reference:SL2.40ch01 gene_region:68386777-68387841 transcript_region:SL2.40ch01:68386777..68387841- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** Q7X9B1_FRAAN); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic " 3 1 10 18 opLeV0100001556 sgn|U219401 CTGTTCGGAAAGTCACTCTGCAGACTGGCAAGGTTAAGGCTATTCAGAGAATGCCGTACTCTGATTTTGG Experimental SGN-U569328 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|82621150|gb|ABB86263.1| (e_value=5e-93) glutamine; (*ATH) AT4G25720.2 (e_value=5e-78) Symbol: None | similar to putative glutamine cyclotransferase precursor [Oryza sativa (japonica cultivar-group)] (GB:BAD67954.1); contains InterPro domain Glutamine cyclotransferase (InterPro:IPR007788) | chr4:13099825-13102497 REVERSE | Aliases: No... ; Solyc03g007900.2.1 genomic_reference:SL2.40ch03 gene_region:2416651-2422800 transcript_region:SL2.40ch03:2416651..2422800+ go_terms:GO:0016603 functional_description:"Glutamine cyclotransferase-like (AHRD V1 **** Q2V9A5_SOLTU); contains Interpro domain(s) IPR007788 Glutamine cyclotransferase " 3 7 14 18 opLeV0100001557 sgn|U221768 TATACACTGATGCAACGGTCTATCTCCACAATGGGTGTTCAAATCCAGTGGTGCATTGTGACTTGAAGCC Experimental SGN-U575197 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157348365|emb|CAO23152.1| (e_value=6e-30) unnamed; (*ATH) AT3G47580.1 (e_value=9e-15) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, protein kinase Xa21 - Oryza sativa, PIR:A57676 | chr3:17543633-17547044 FORWARD | Aliases: F1P2.130; Solyc02g068830.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:33321008-33323344 transcript_region:SL2.40ch02:33321008..33323344- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK" 3 5 14 18 opLeV0100001558 sgn|U212652 CTCTTCCTGAAGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGA Experimental SGN-U578637 Tomato 200607#2 [198 ESTs aligned] (*GB) gi|27463709|gb|AAO15916.1| (e_value=0) neutral leucine aminopeptidase preprotein; preLAP-N; metallo-exopeptidase; leucyl aminopeptidase; LAP [Lycopersicon esculentum]; (*ATH) AT4G30920.1 (e_value=0) Symbol: None | cytosol aminopeptidase family protein, contains Pfam profiles: PF00883 cytosol aminopeptidase family catalytic domain, PF02789: cytosol aminopeptidase family N-terminal domain | chr4:15046463-15049379 REVERSE | Aliases: F6I18.170, F6I... ; (*SWP) sp|Q42876|AMPL2_SOLLC (e_value=0) Leucine aminopeptidase 2, chloroplastic OS=Solanum lycopersicum GN=LAPA2; Solyc12g010040.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3180908-3187436 transcript_region:SL2.40ch12:3180908..3187436- go_terms:GO:0003779 functional_description:"Leucyl aminopeptidase (AHRD V1 ***- D7DWG6_NOSA0); contains Interpro domain(s) IPR011356 Peptidase M17, leucyl aminopeptidase IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal " 3 3 14 18 opLeV0100001559 sgn|U217547 CCATACTGATACCGTGATTTCTGTATCATGCAACCCCACTCAGAACATGATTGCTTCTGGTTCGCTTGGG Experimental SGN-U574131 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|116782369|gb|ABK22482.1| (e_value=3e-143) unknown; (*ATH) AT3G49660.1 (e_value=6e-137) | Symbol: None | transducin family protein / WD-40 repeat family protein, beta-transducin, Schizosaccharomyces pombe, EMBL:CAA17803 | chr3:18424675-18426379 FORWARD | Aliases: T16K5.10; (*SWP) sp|Q2KIG2|WDR5_BOVIN (e_value=7e-125) WD repeat-containing protein 5 OS=Bos taurus GN=WDR5; Solyc02g091790.2.1 genomic_reference:SL2.40ch02 gene_region:47584642-47589198 transcript_region:SL2.40ch02:47584642..47589198+ go_terms:GO:0035064 functional_description:"Wd-repeat protein (AHRD V1 **-- Q17GJ0_AEDAE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region " 3 1 14 18 opLeV0100001560 sgn|U218003 ACATCCTACAAATTTACCATCACCACCTCCACCGCATGAGTCTCAAGACAAACTACATCCTGCGGGACAG Experimental SGN-U583462 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157354726|emb|CAO48044.1| (e_value=7e-92) unnamed; (*ATH) AT4G18640.1 (e_value=4e-70) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative | chr4:10259695-10263775 FORWARD | Aliases: F28A21.50, F28A21_50; (*SWP) sp|P93194|RPK1_IPONI (e_value=5e-22) Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1; Solyc03g006130.2.1 genomic_reference:SL2.40ch03 gene_region:782748-790090 transcript_region:SL2.40ch03:782748..790090- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK" 3 7 18 18 opLeV0100001561 sgn|U235496 AACCTAATCAAAACCCCCCTTAGGAAGAATTATTTCCTGGTTGGGCCCATAGGAAAAAACATGGGGGAAG Experimental SGN-U597868 Tomato 200607#2 [1 ESTs aligned] \N \N 3 5 18 18 opLeV0100001562 sgn|U223665 TTCTGAAACGAGGAAGTTGGGTTTGCTTGGGGCCCCTCCTTATCGAACGTTTGTCTTGGATGAGCTTCGA Experimental SGN-U585818 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|145308448|gb|ABP57459.1| (e_value=0) receptor-like; (*ATH) AT3G03770.1 (e_value=6e-106) Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, may contain C-terminal ser/thr protein kinase domain, similar to serine/threonine protein kinase Pto GB:AAB47421 (Lycopersicon esculentum) | chr3:945149-949045 REVERSE | Alia... ; (*SWP) sp|Q9LX66|Y3290_ARATH (e_value=1e-37) Probable receptor-like protein kinase At3g46290 OS=Arabidopsis thaliana GN=At3g46290; Solyc01g096940.2.1 genomic_reference:SL2.40ch01 gene_region:79700923-79705018 transcript_region:SL2.40ch01:79700923..79705018- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK" 3 3 18 18 opLeV0100001563 sgn|U217964 CTTGAGGATCTCTAGCTAAGAGTCATAGAAGATCGATTTTGTAACAAGAGGGGGGTAGAGGATAGAGGTG Experimental SGN-U586455 Tomato 200607#2 [29 ESTs aligned] (*GB) gi|157335945|emb|CAO61775.1| (e_value=0) unnamed; (*ATH) AT4G08540.1 (e_value=3e-168) | Symbol: None | expressed protein | chr4:5433642-5436521 FORWARD | Aliases: T15F16.15, T15F16_15; \N \N 3 1 18 18 opLeV0100001564 sgn|U222215 CGGTTCGAACCGGTCTCCACCGGTCGAGAGCCACCTCTCCGGTTTAAATTCCATACAATCCTCACCCCAA Experimental SGN-U574105 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157337152|emb|CAO21498.1| (e_value=7e-96) unnamed; (*ATH) AT5G58860.1 (e_value=7e-93) Symbol: None | cytochrome P450 86A1 (CYP86) (CYP86A1) / CYPLXXXVI / P450-dependent fatty acid omega-hydroxylase, identical to Cytochrome P450 86A1 (CYPLXXXVI) (P450-dependent fatty acid omega-hydroxylase) (SP:P48422) (Arabidopsis thaliana) | chr5:23... ; (*SWP) sp|P48422|C86A1_ARATH (e_value=7e-92) Cytochrome P450 86A1 OS=Arabidopsis thaliana GN=CYP86A1; Solyc06g076800.2.1 genomic_reference:SL2.40ch06 gene_region:44095294-44097255 transcript_region:SL2.40ch06:44095294..44097255+ go_terms:GO:0019825,GO:0008393 functional_description:"Cytochrome P450" 1 7 11 18 opLeV0100001565 sgn|U227713 ATATTGGAAACAAAAACAAGCCCGTGTTCTGCTTTCAAAGTCAGTCGTCGAATTATGGCTAGCTTCAATG Experimental SGN-U584082 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147862666|emb|CAN83595.1| (e_value=6e-62) hypothetical; (*ATH) AT4G28720.1 (e_value=1e-58) Symbol: None | flavin-containing monooxygenase family protein / FMO family protein, similar to flavin-containing monooxygenases YUCCA (gi:16555352), YUCCA2 (gi:16555354), and YUCCA3 (gi:16555356) from Arabidopsis thaliana | chr4:14192589-14194262 FO... ; (*SWP) sp|Q5L2G3|CZCO_GEOKA (e_value=1e-11) Uncharacterized oxidoreductase czcO-like OS=Geobacillus kaustophilus GN=GK0582; Solyc06g008050.2.1 genomic_reference:SL2.40ch06 gene_region:1915865-1918482 transcript_region:SL2.40ch06:1915865..1918482- go_terms:GO:0004497 functional_description:"Monooxygenase (AHRD V1 **** D5ZV09_9ACTO); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II " 1 5 11 18 opLeV0100001566 sgn|U231332 GACTATCACCCGCGTTGGGTCTGATGAAGATATTTCCGTTGATAAGAAAAACTCAGTTCCATTTCCAACA Experimental SGN-U570200 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|4972072|emb|CAB43879.1| (e_value=3e-14) putative; (*ATH) AT4G27470.1 (e_value=3e-16) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr4:13735005-13736524 FORWARD | Aliases: F27G19.70, F27G19_70; Solyc12g013800.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4593932-4596815 transcript_region:SL2.40ch12:4593932..4596815- go_terms:GO:0008270 functional_description:"RING finger protein 5 (AHRD V1 *-*- B6TF06_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type " 1 3 11 18 opLeV0100001567 sgn|U214232 ATCTGCACAAGGTTAAGTCCAGAACCCGGTTTAAACGGGTATCAGCTAAGCCTGAGCCGAGGAAGCAGTC Experimental SGN-U564260 Tomato 200607#2 [35 ESTs aligned] (*GB) gi|157343549|emb|CAO68055.1| (e_value=2e-75) unnamed; (*ATH) AT3G02550.1 (e_value=5e-61) | Symbol: None | LOB domain protein 41 / lateral organ boundaries domain protein 41 (LBD41), identical to LOB DOMAIN 41 (Arabidopsis thaliana) GI:17227172 | chr3:536512-538005 REVERSE | Aliases: F16B3.18, F16B3_18; (*SWP) sp|Q9M886|LBD41_ARATH (e_value=4e-60) LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41; Solyc03g119530.2.1 genomic_reference:SL2.40ch03 gene_region:62162997-62164121 transcript_region:SL2.40ch03:62162997..62164121+ functional_description:"LOB domain protein 42 (AHRD V1 ***- D7KWD0_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB " 1 1 11 18 opLeV0100001568 sgn|U215260 CCTGCTTGTCGCGTCTTAATTCATCGATTTCTCCATCAAATGATCCAAACCTTCCCAACTCAACACATGA Experimental SGN-U580800 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|157348009|emb|CAO22596.1| (e_value=1e-80) unnamed; (*ATH) AT3G22830.1 (e_value=1e-79) | Symbol: None | heat shock transcription factor family protein, contains Pfam profile: PF00447 HSF-type DNA-binding domain | chr3:8078827-8081058 FORWARD | Aliases: MWI23.20; (*SWP) sp|Q9LUH8|HFA6B_ARATH (e_value=1e-78) Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b; \N \N 1 7 15 18 opLeV0100001569 sgn|U222262 GGAAGAAGCCAATCCACAGCCACCGAAGCAGACACTTCATCTAGCAAGCATGGTGAAACTTCTATCAATG Experimental SGN-U587617 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118489758|gb|ABK96679.1| (e_value=3e-62) unknown; (*ATH) AT4G27300.1 (e_value=1e-54) | Symbol: None | S-locus protein kinase, putative, similar to receptor protein kinase (Ipomoea trifida) gi:836954:gb:AAC23542; contains S-locus glycoprotein family domain, Pfam:PF00954 | chr4:13669314-13672354 REVERSE | Aliases: M4I22.110, M4I22_110; (*SWP) sp|Q8GYA4|CRK10_ARATH (e_value=9e-47) Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10; Solyc02g030300.2.1 genomic_reference:SL2.40ch02 gene_region:16184082-16189781 transcript_region:SL2.40ch02:16184082..16189781+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 1 5 15 18 opLeV0100001570 sgn|U223528 TGTCCCTCAGCTGAATTAATGGTGAAAAATACAGTAAGATCAGCTTCTTCTATGGATCCAACTATACCTG Experimental SGN-U580621 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157339839|emb|CAO44380.1| (e_value=2e-70) unnamed; (*ATH) AT4G31760.1 (e_value=4e-64) | Symbol: None | peroxidase, putative, similar to peroxidase (Spinacia oleracea) gi:1781338:emb:CAA71496 | chr4:15368266-15369730 REVERSE | Aliases: F28M20.50, F28M20_50; (*SWP) sp|O81772|PER46_ARATH (e_value=4e-63) Peroxidase 46 OS=Arabidopsis thaliana GN=PER46; Solyc12g096530.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63751473-63754937 transcript_region:SL2.40ch12:63751473..63754937- go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- D7MRK0_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial " 1 3 15 18 opLeV0100001571 sgn|U224477 GTGAAGGTGGTAGCCAATCTTGCAGCTGAAGACAGCAATCAGGAAAAGATTGTGCAAGAAGGTGGTTTAG Experimental SGN-U582620 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157343971|emb|CAO68904.1| (e_value=2e-89) unnamed; (*ATH) AT1G12430.1 (e_value=3e-75) | Symbol: None | armadillo/beta-catenin repeat family protein / kinesin motor family protein | chr1:4233871-4238757 REVERSE | Aliases: None; (*SWP) sp|Q0DV28|ARK1_ORYSJ (e_value=1e-83) Armadillo repeat-containing kinesin-like protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0152900; Solyc11g008350.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2551602-2567405 transcript_region:SL2.40ch11:2551602..2567405- go_terms:GO:0008017,GO:0003779 functional_description:"Kinesin-like protein (AHRD V1 *-*- D0NDH4_PHYIN); contains Interpro domain(s) IPR001752 Kinesin, motor region " 1 1 15 18 opLeV0100001572 sgn|U222254 CAGCAACAGAGGCAGTCTCATTTGTGACTTCTTGGGCGGCTTTTTTGGCCGTCTCAGCGCCTTGTTTCGC Experimental SGN-U582011 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147852500|emb|CAN78519.1| (e_value=8e-20) hypothetical; (*ATH) AT4G13230.1 (e_value=5e-12) Symbol: None | late embryogenesis abundant domain-containing protein / LEA domain-containing protein, similar to late embryogenesis abundant protein (Picea glauca) GI:1161171; contains Pfam profile PF02987: Late embryogenesis abundant protein | chr4... ; Solyc09g061960.2.1 genomic_reference:SL2.40ch09 gene_region:56425281-56426627 transcript_region:SL2.40ch09:56425281..56426627- functional_description:"Late embryogenesis abundant protein (AHRD V1 ***- Q2HV86_MEDTR); contains Interpro domain(s) IPR008611 Enterobacterial EspB " 1 7 19 18 opLeV0100001573 sgn|U230666 ACTCACGAGGTTGTTGGTCTCCATACTAGGCATTTGCAACAACCTTCTTTTTTACTCTAGTAATCATTGC Experimental SGN-U582127 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157353707|emb|CAO46239.1| (e_value=2e-13) unnamed; \N \N 1 3 19 18 opLeV0100001574 sgn|U226970 GTTTGCAGAAGTGGTGCCTTCAAAGCACCGCACCATGATTTATGCTTTTGATCGTGCGTTTGAGGGTTCA Experimental SGN-U569216 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157348190|emb|CAO22900.1| (e_value=2e-83) unnamed; (*ATH) AT4G36790.1 (e_value=1e-82) Symbol: None | transporter-related, low similarity to spinster membrane proteins from (Drosophila melanogaster) GI:12003976, GI:12003972, GI:12003974, GI:12003970; contains Pfam profile PF00083: major facilitator superfamily protein | chr4:17336177-... ; Solyc02g085670.2.1 genomic_reference:SL2.40ch02 gene_region:43075413-43078617 transcript_region:SL2.40ch02:43075413..43078617+ go_terms:GO:0005351 functional_description:"Major facilitator superfamily MFS_1 (AHRD V1 **-- A4FJQ9_SACEN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter " 1 1 19 18 opLeV0100001575 sgn|U230905 GAATTTCAAAAAGGTATTTGACGTTAACGTGTACGGATCATTTCTCGGTGCGAAATATGCTGCCCGGGTC Experimental SGN-U583958 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157346147|emb|CAO15844.1| (e_value=1e-83) unnamed; (*ATH) AT1G52340.1 (e_value=9e-62) | Symbol: None | short-chain dehydrogenase/reductase (SDR) family protein, similar to stem secoisolariciresinol dehydrogenase GI:13752458 from (Forsythia x intermedia) | chr1:19493468-19495317 REVERSE | Aliases: F19K6.3, F19K6_3; (*SWP) sp|Q9C826|ABA2_ARATH (e_value=8e-61) Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2; Solyc10g083170.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62364083-62366056 transcript_region:SL2.40ch10:62364083..62366056- go_terms:GO:0018502 functional_description:"2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase (AHRD V1 **** LINC_PSEPA); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase " 3 7 11 18 opLeV0100001576 sgn|U216396 CAAGATCCTAGTTATGTCTACCAATGGCGTTTGCAGGCGGAGATCGCAATGAGAGCTGATGGGAAGCCTG Experimental SGN-U579211 Tomato 200607#2 [37 ESTs aligned] (*GB) gi|157340289|emb|CAO45966.1| (e_value=2e-165) unnamed; (*ATH) AT1G80380.2 (e_value=4e-164) | Symbol: None | encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle. | chr1:30222157-30224863 FORWARD | Aliases: None; (*SWP) sp|Q944I4|GLYK_ARATH (e_value=3e-163) D-glycerate 3-kinase, chloroplastic OS=Arabidopsis thaliana GN=GLYK; Solyc03g120430.2.1 genomic_reference:SL2.40ch03 gene_region:62875286-62878923 transcript_region:SL2.40ch03:62875286..62878923- go_terms:GO:0008887 functional_description:"Glycerate kinase (AHRD V1 **** C1DYY5_9CHLO)" 3 5 11 18 opLeV0100001577 sgn|U230731 TGGAATTTGACACGACAAGGACGACCAATAGTTCCTCGTTTTCCATCCAAGATGACTCTGAAATGCCACA Experimental SGN-U566905 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|4519671|dbj|BAA75684.1| (e_value=2e-34) transfactor [Nicotiana tabacum]; (*ATH) AT4G28610.1 (e_value=1e-23) Symbol: None | myb family transcription factor, putative / phosphate starvation response regulator, putative (PHR1), contains Pfam profile: PF00249 myb-like DNA-binding domain; identical to cDNA phosphate starvation response regulator 1 (phr1 gene) ... ; Solyc09g072830.2.1 genomic_reference:SL2.40ch09 gene_region:61018842-61025055 transcript_region:SL2.40ch09:61018842..61025055- go_terms:GO:0045449 functional_description:"Myb family transcription factor (AHRD V1 **-- D7M706_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class " 3 1 11 18 opLeV0100001578 AF416727 TACCACTGCTATAGATGGTCTATATTGTGTTGGCGATAGTTGCTTCCCAGGACAAGGTGTTATAGCTGTA Experimental SGN-U584987 Tomato 200607#2 [31 ESTs aligned] (*GB) gi|75159637|sp|Q8S4R4|CRTSO_SOLLC (e_value=0) RecName:; (*ATH) AT1G06820.1 (e_value=0) Symbol: None | carotenoid isomerase, putative, similar to carotenoid isomerase from Lycopersicon esculentum (gi:19550437); contains Pfam profile: PF02032 Phytoene dehydrogenase related enzyme | chr1:2092996-2096231 REVERSE | Aliases: F4H5.10, F4H5_1... ; (*SWP) sp|Q8S4R4|CRTSO_SOLLC (e_value=0) Carotenoid isomerase, chloroplastic OS=Solanum lycopersicum GN=CRTISO; Solyc10g081650.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62006972-62011520 transcript_region:SL2.40ch10:62006972..62011520- go_terms:GO:0046608 functional_description:"Carotenoid isomerase, chloroplastic" 3 7 15 18 opLeV0100001579 sgn|U214345 CCTCTGTTGCGGAGCTCTGATGTACATTTCCTATAGGAGGGATATCTAACATACCGTTTTGCATTCTACA Experimental SGN-U572085 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|1905785|emb|CAA71687.1| (e_value=1e-91) G/HBF-1 [Glycine max]; (*ATH) AT5G28770.1 (e_value=2e-35) Symbol: None | bZIP transcription factor family protein, similar to seed storage protein opaque-2(bZIP family)GI:168428 from Zea mays; contains Pfam profile PF00170: bZIP transcription factor; identical to cDNA bZIP protein BZO2H3 GI:10954098 | chr5... ; (*SWP) sp|Q99090|CPRF2_PETCR (e_value=3e-76) Light-inducible protein CPRF-2 OS=Petroselinum crispum GN=CPRF-2; \N \N 3 5 15 18 opLeV0100001580 sgn|U223245 TAATGACTGCAATGCTCTTGCTCTGGGTTTTCATGGGACTCTTTGCGGGCTACTCAGCTTCCCGTCTCTA Experimental SGN-U573240 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157339808|emb|CAO44349.1| (e_value=3e-163) unnamed; (*ATH) AT5G25100.1 (e_value=7e-160) | Symbol: None | endomembrane protein 70, putative, TM4 family; | chr5:8648106-8651115 REVERSE | Aliases: T11H3.110, T11H3_110; (*SWP) sp|Q66HG5|TM9S2_RAT (e_value=2e-107) Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2; Solyc08g006820.2.1 genomic_reference:SL2.40ch08 gene_region:1356285-1362353 transcript_region:SL2.40ch08:1356285..1362353- go_terms:GO:0005515 functional_description:"Transmembrane 9 superfamily protein member 4 (AHRD V1 ***- B6SXZ2_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) " 3 3 15 18 opLeV0100001581 sgn|U229471 CTGAAGTTGTACGCTACCGGCCCTTAACACTCCGGTGACGATGTACGATCAAAACTATTCAATACCAGCG Experimental SGN-U579315 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157335382|emb|CAO61212.1| (e_value=1e-13) unnamed; \N \N 3 1 15 18 opLeV0100001582 sgn|U214245 CTGTTCCGTTTAAACAAACACTGTTGTCTGATGTGGAACCATATTCGTGAGGGGTATTGATAGAAGATAC Experimental SGN-U569662 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157340299|emb|CAO45976.1| (e_value=2e-20) unnamed; (*ATH) AT1G52800.1 (e_value=2e-19) Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to GS-AOP loci (GI:16118889, GI:16118887, GI:16118891, GI:16118893); contains PF03171 2OG-Fe(II) oxygenase superfamily domain | chr1:19667712-19669030 FORWARD | Aliases: F14... ; \N \N 3 7 19 18 opLeV0100001583 sgn|U221620 GAGTGCTGCAGGTTGGGCCTAGCAAAGTCTATTGGTGTCAGCAATTTCAGTTGTACCAAACTCTCACAAC Experimental SGN-U588466 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157352910|emb|CAO44800.1| (e_value=3e-73) unnamed; (*ATH) AT1G59960.1 (e_value=5e-56) Symbol: None | aldo/keto reductase, putative, similar to NADPH-dependent codeinone reductase GI:6478210 (Papaver somniferum), NAD(P)H dependent 6'-deoxychalcone synthase (Glycine max)(GI:18728) | chr1:22074961-22076812 REVERSE | Aliases: F23H11.27, ... ; (*SWP) sp|Q7G764|NADO1_ORYSJ (e_value=1e-56) Probable NAD(P)H-dependent oxidoreductase 1 OS=Oryza sativa subsp. japonica GN=Os10g0113000; Solyc03g098100.2.1 genomic_reference:SL2.40ch03 gene_region:53888188-53889477 transcript_region:SL2.40ch03:53888188..53889477+ go_terms:GO:0055114 functional_description:"Reductase 2 (AHRD V1 ***- Q6TY50_HYDMC); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup " 3 5 19 18 opLeV0100001584 sgn|U235114 CAAAAGGAAACAATTCAACCAACCCTACGCTGATACCTAGACATTTCTTTCGGGAGGGGGGAACCATTTA Experimental SGN-U597044 Tomato 200607#2 [1 ESTs aligned] \N \N 3 3 19 18 opLeV0100001585 sgn|U215520 CTAAAAGCAGAGTTTCCCAAGGGTAAAAAAGAGCTGGCAGTGTCTCTGTTTCAGGCTGTTGTTTTAATGC Experimental SGN-U585944 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|159895408|gb|ABX09988.1| (e_value=0) cullin; (*ATH) AT5G46210.1 (e_value=0) | Symbol: CUL4 | cullin, putative, similar to SP:Q13619 Cullin homolog 4A (CUL-4A) {Homo sapiens}; contains Pfam profile PF00888: Cullin family | chr5:18748645-18754037 REVERSE | Aliases: MDE13.3, MDE13_3, CUL4; (*SWP) sp|Q13620|CUL4B_HUMAN (e_value=4e-152) Cullin-4B OS=Homo sapiens GN=CUL4B; Solyc02g070460.2.1 genomic_reference:SL2.40ch02 gene_region:34776959-34791726 transcript_region:SL2.40ch02:34776959..34791726+ go_terms:GO:0030332 functional_description:"Cullin 4 (AHRD V1 ***- A9LK40_SOLLC); contains Interpro domain(s) IPR001373 Cullin, N-terminal " 3 1 19 18 opLeV0100001586 sgn|U226946 AGCTTATAGTTTTGATATCAAACCATTTGCTTTCTCTGCTTCTGAACTCTCTGGAACCTCTGCTGGATCC Experimental SGN-U577407 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|30961941|gb|AAP40022.1| (e_value=1e-106) C-repeat/DRE-binding factor [Nicotiana tabacum]; (*ATH) AT1G53910.1 (e_value=5e-53) Symbol: RAP2.12 | encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.12). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. | chr1:... ; (*SWP) sp|Q9SSA8|RA212_ARATH (e_value=5e-52) Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12; Solyc12g049560.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46647808-46650026 transcript_region:SL2.40ch12:46647808..46650026- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 ***- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding " 1 7 12 18 opLeV0100001587 sgn|U219756 GCCTCAGGTCAGTCAAACTTGAGGCACCTGATCTTGAGACATTTTGGTTCCATGGGAAGAAATCTTCAAG Experimental SGN-U564397 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|147833276|emb|CAN68530.1| (e_value=5e-47) hypothetical; (*ATH) AT2G42730.1 (e_value=1e-13) | Symbol: None | F-box family protein, contains F-box domain Pfam:PF00646 | chr2:17794531-17798659 REVERSE | Aliases: F7D19.27, F7D19_27; (*SWP) sp|Q0WR05|FBL39_ARATH (e_value=1e-12) F-box/LRR-repeat protein At2g42730 OS=Arabidopsis thaliana GN=At2g42730; Solyc03g121290.2.1 genomic_reference:SL2.40ch03 gene_region:63494989-63497727 transcript_region:SL2.40ch03:63494989..63497727+ functional_description:"F-box family protein (AHRD V1 ***- B9I3S8_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box " 1 5 12 18 opLeV0100001588 sgn|U220861 TTCAAGGATGCCTCCATCGTGGAAGATTTTCGTGCTGCTGTAGTGGAACATAAAGGTACTACAACTGGTT Experimental SGN-U570828 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|147789984|emb|CAN59845.1| (e_value=2e-92) hypothetical; (*ATH) AT1G52380.1 (e_value=6e-80) Symbol: None | Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein, weak similarity to SP:Q09717 Ran-specific GTPase-activating protein 1 (Ran binding protein 1) (RANBP1) (Spi1-binding protein) {Schizosaccharomyces pom... ; Solyc03g120280.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62781048-62782397 transcript_region:SL2.40ch03:62781048..62782397+ go_terms:GO:0005643,GO:0046907 functional_description:"RAN binding protein 3 (AHRD V1 *-*- Q6DJQ7_XENTR); contains Interpro domain(s) IPR000156 Ran Binding Protein 1 " 1 3 12 18 opLeV0100001589 sgn|U218056 GTGTCCACAACTTAAGCCCCTTGTTATGCCTTCTTGGGACAAAATTAAAAAGCGAACAATGAGCAGGGAT Experimental SGN-U580206 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147841766|emb|CAN62210.1| (e_value=1e-25) hypothetical; (*ATH) AT3G48880.2 (e_value=2e-22) | Symbol: None | F-box family protein, N7 protein - Medicago truncatula, EMBL:CAA76808 ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 | chr3:18137897-18140157 FORWARD | Aliases: None; (*SWP) sp|Q9M2Z5|FBL53_ARATH (e_value=2e-21) F-box/LRR-repeat protein At3g48880 OS=Arabidopsis thaliana GN=At3g48880; Solyc03g025930.2.1 genomic_reference:SL2.40ch03 gene_region:7733745-7735103 transcript_region:SL2.40ch03:7733745..7735103+ functional_description:"F-box family protein (AHRD V1 ***- D7LS19_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box " 1 1 12 18 opLeV0100001590 sgn|U218917 CTGGTCACACCTTATAGCATAGGGGTTTCAGAGGGCCCCGAGATATTTTGTTTTGATCTTATATTTCTCG Experimental SGN-U577701 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|147852209|emb|CAN80138.1| (e_value=4e-20) hypothetical; (*ATH) AT1G52820.1 (e_value=9e-19) | Symbol: None | 2-oxoglutarate-dependent dioxygenase, putative, similar to AOP1 (Arabidopsis lyrata)(GI:16118889); contains Pfam profile PF03171: 2OG-Fe(II) oxygenase superfamily domain | chr1:19672851-19674095 FORWARD | Aliases: F14G24.9, F14G24_9; \N \N 1 7 16 18 opLeV0100001591 sgn|U215685 CTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACA Experimental SGN-U567350 Tomato 200607#2 [29 ESTs aligned] (*GB) gi|157327950|emb|CAO16914.1| (e_value=3e-123) unnamed; (*ATH) AT5G53750.1 (e_value=1e-83) Symbol: None | similar to CBS domain-containing protein [Arabidopsis thaliana] (TAIR:At4g27460.1); similar to OSJNBb0017I01.11 [Oryza sativa (japonica cultivar-group)] (GB:XP_474370.1); contains InterPro domain CBS domain (InterPro:IPR000644) | chr5... ; Solyc02g078480.2.1 genomic_reference:SL2.40ch02 gene_region:37721777-37724047 transcript_region:SL2.40ch02:37721777..37724047- functional_description:"CBS domain containing protein (AHRD V1 ***- B6SWR6_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core " 1 5 16 18 opLeV0100001592 sgn|U226801 TGATGTATACATGGGAAGGGGGCGAGATGATCGGAGGGTTGGACGAGGTGCATATTAGCTGGTGTTGAAA Experimental SGN-U569086 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157342789|emb|CAO65501.1| (e_value=1e-93) unnamed; (*ATH) AT4G28990.1 (e_value=9e-51) Symbol: None | RNA-binding protein-related, contains weak similarity to Swiss-Prot:Q01844 RNA-binding protein EWS (EWS oncogene)(Ewing sarcoma breakpoint region 1 protein) (Homo sapiens) | chr4:14291157-14293180 FORWARD | Aliases: F19B15.20, F19B15_... ; Solyc05g018340.2.1 genomic_reference:SL2.40ch05 gene_region:20573843-20579911 transcript_region:SL2.40ch05:20573843..20579911+ go_terms:GO:0005622 functional_description:"cDNA clone 001-201-C05 full insert sequence (AHRD V1 **-- B7EY91_ORYSJ); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type " 1 3 16 18 opLeV0100001593 sgn|U216820 ATTTCAAACTTTAAAGAGTACCACATTCCGACCACGACGACGATGGCCGGTCAACCGGAGAAGAAGCCAG Experimental SGN-U567791 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|157835621|pdb|2P5Q|A (e_value=3e-75) Chain; (*ATH) AT1G63460.1 (e_value=6e-71) | Symbol: None | glutathione peroxidase, putative, contains Pfam profile: PF00255 glutathione peroxidases | chr1:23538681-23540132 FORWARD | Aliases: F2K11.16, F2K11_16; (*SWP) sp|Q8LBU2|GPX8_ARATH (e_value=5e-70) Probable glutathione peroxidase 8 OS=Arabidopsis thaliana GN=GPX8; \N \N 1 1 16 18 opLeV0100001594 sgn|U213918 TTTAGATTTCCTGATCGTGACCTTGATTGCAAATGGAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACC Experimental SGN-U577609 Tomato 200607#2 [50 ESTs aligned] (*GB) gi|44804336|emb|CAD26882.1| (e_value=3e-179) protein kinase CK2 alpha subunit [Nicotiana tabacum]; (*ATH) AT5G67380.1 (e_value=4e-176) Symbol: None | casein kinase II alpha chain 1, identical to casein kinase II, alpha chain 1 (CK II) (Arabidopsis thaliana) SWISS-PROT:Q08467; contains protein kinase domain, Pfam:PF00069 | chr5:26898192-26900611 REVERSE | Aliases: K8K14.10, K8K14_10... ; (*SWP) sp|Q08467|CSK21_ARATH (e_value=4e-175) Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana GN=CKA1; Solyc02g092640.2.1 genomic_reference:SL2.40ch02 gene_region:48238108-48244942 transcript_region:SL2.40ch02:48238108..48244942+ go_terms:GO:0006468 functional_description:"Casein kinase (AHRD V1 ***- C5JNY0_AJEDS); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 1 7 20 18 opLeV0100001595 sgn|U220102 GGTACTTAAAGCAGGAAATTTGCCCTTCCCTGGTTTTGTGCTACCATCAGTGAACGACTTTGAGACAGAG Experimental SGN-U568857 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|170792414|emb|CAP08387.1| (e_value=2e-63) Ppx-GppA; (*ATH) AT1G09190.1 (e_value=1e-24) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr1:2966122-2971459 REVERSE | Aliases: T12M4.11, T12M4_11; Solyc01g100260.2.1 genomic_reference:SL2.40ch01 gene_region:82089176-82095527 transcript_region:SL2.40ch01:82089176..82095527+ functional_description:"Guanosine-5&apos-triphosphate 3&apos-diphosphate pyrophosphatase (AHRD V1 **-- D8MKR7_9ENTR); contains Interpro domain(s) IPR003695 Ppx/GppA phosphatase " 1 5 20 18 opLeV0100001596 sgn|U221805 CAAGGAGTTGATGGGGTTGAAACCGAAGAATCAAAGCGCAGAAAGACCGAAGTCTTGGAAGAAACGAAGG Experimental SGN-U573553 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|115489554|ref|NP_001067264.1| (e_value=2e-42) Os12g0613500; (*ATH) AT5G57120.1 (e_value=3e-40) | Symbol: None | expressed protein, weak similarity to SP:Q14978 Nucleolar phosphoprotein p130 {Homo sapiens} | chr5:23139766-23141739 REVERSE | Aliases: MUL3.6, MUL3_6; (*SWP) sp|Q14978|NOLC1_HUMAN (e_value=4e-17) Nucleolar phosphoprotein p130 OS=Homo sapiens GN=NOLC1; Solyc07g008330.2.1 genomic_reference:SL2.40ch07 gene_region:3114775-3120434 transcript_region:SL2.40ch07:3114775..3120434- functional_description:"Nucleolar and coiled-body phosphoprotein 1-like (AHRD V1 *--- B8JIY2_DANRE); contains Interpro domain(s) IPR007718 SRP40, C-terminal " 1 3 20 18 opLeV0100001597 sgn|U226384 GGAGTGCGTGCTGGATATGTTCCTGTATCTGAAACCAAAGTCTATTGGTTTATCTGCTACAATAGCTCGT Experimental SGN-U573805 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157328623|emb|CAO22321.1| (e_value=0) unnamed; (*ATH) AT2G35660.1 (e_value=8e-176) | Symbol: None | monooxygenase family protein, nearly identical to CTF2A (GI:4164576)(Plant Physiol. 119, 364 (1999), PGR99-008) | chr2:14995526-14997505 FORWARD | Aliases: T20F21.15, T20F21_15; (*SWP) sp|Q40412|ABA2_NICPL (e_value=1e-23) Zeaxanthin epoxidase, chloroplastic OS=Nicotiana plumbaginifolia GN=ABA2; Solyc06g060880.2.1 genomic_reference:SL2.40ch06 gene_region:35282556-35285882 transcript_region:SL2.40ch06:35282556..35285882- go_terms:GO:0008152,GO:0016491 functional_description:"Monooxygenase FAD-binding protein (AHRD V1 **-- Q1B616_MYCSS); contains Interpro domain(s) IPR003042 Aromatic-ring hydroxylase-like " 3 7 12 18 opLeV0100001598 sgn|U212752 ATATCTACCTCCAAGAAATGATTTGCTTGCTTTTGTCGAAGCTCGGACTCAAGCTTCTGCTTCTAAAGCA Experimental SGN-U578581 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|416649|sp|Q03662|GSTX1_TOBAC (e_value=9e-84) Probable; (*ATH) AT3G09270.1 (e_value=2e-50) | Symbol: None | glutathione S-transferase, putative, similar to glutathione transferase GB:CAA71784 (Glycine max) | chr3:2848295-2849293 REVERSE | Aliases: F3L24.14; (*SWP) sp|Q03662|GSTX1_TOBAC (e_value=6e-85) Probable glutathione S-transferase OS=Nicotiana tabacum; Solyc09g011490.2.1 genomic_reference:SL2.40ch09 gene_region:4809980-4811002 transcript_region:SL2.40ch09:4809980..4811002- go_terms:GO:0004364 functional_description:"Glutathione S-transferase-like protein (AHRD V1 **** A8DUB0_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal " 3 5 12 18 opLeV0100001599 sgn|U223346 ACAGATAGGACTCAGGAACCATACTCTGACACACAATGGGTTAAGGGCTGTTAACAAGCTTGATGGGCTC Experimental SGN-U567281 Tomato 200607#2 [62 ESTs aligned] (*GB) gi|267196|sp|Q00775|SSG1_SOLTU (e_value=0) Granule-bound starch synthase I, chloroplast precursor (GBSS I); (*ATH) AT1G32900.1 (e_value=0) | Symbol: None | starch synthase, putative, similar to starch synthase SP:Q42857 from (Ipomoea batatas) | chr1:11920371-11923746 REVERSE | Aliases: F9L11.8, F9L11_8; (*SWP) sp|Q00775|SSG1_SOLTU (e_value=0) Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY; Solyc08g083320.2.1 genomic_reference:SL2.40ch08 gene_region:62981703-62985075 transcript_region:SL2.40ch08:62981703..62985075- go_terms:GO:0004373,GO:0005515 functional_description:"Granule-bound starch synthase (AHRD V1 **** B0ZTE3_SOLTU); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type " 3 3 12 18 opLeV0100001600 sgn|U226562 CCCCAAAAGCCCCCGAGCTTCTGAGCTGAAGCGGAAGTCTTACGATTTCAGGTATGCTTCTTTAATGAAA Experimental SGN-U585223 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157330099|emb|CAO43700.1| (e_value=3e-99) unnamed; (*ATH) AT4G16390.1 (e_value=1e-92) | Symbol: None | chloroplastic RNA-binding protein P67, putative, nearly identical to 67kD chloroplastic RNA-binding protein, P67 (Arabidopsis thaliana) GI:9755842 | chr4:9257980-9260300 FORWARD | Aliases: DL4225W, FCAALL.354; (*SWP) sp|Q9ZU27|PPR76_ARATH (e_value=6e-16) Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana GN=At1g51965; Solyc11g012670.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5440678-5442747 transcript_region:SL2.40ch11:5440678..5442747- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRC5_ARALY); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal " 3 1 12 18 opLeV0100001601 sgn|U214795 CTGACACTATAAGGGACAACTGGATCGGTACGTTCATTTGCCTTGTAATTGGATGCTATCTGTTGCAAGA Experimental SGN-U585513 Tomato 200607#2 [66 ESTs aligned] (*GB) gi|157340882|emb|CAO47687.1| (e_value=7e-73) unnamed; (*ATH) AT1G49430.1 (e_value=7e-71) | Symbol: None | long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase, nearly identical to acyl CoA synthetase (MF45P) GI:1617268 from (Brassica napus) | chr1:18294712-18299493 FORWARD | Aliases: F13F21.14, F13F21_14; (*SWP) sp|P41216|ACSL1_MOUSE (e_value=2e-23) Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1; Solyc01g109180.2.1 genomic_reference:SL2.40ch01 gene_region:87977713-87983350 transcript_region:SL2.40ch01:87977713..87983350- go_terms:GO:0008152 functional_description:"Long-chain-fatty-acid-CoA ligase (AHRD V1 ***- B2WS80_ARAHA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase " 3 7 16 18 opLeV0100001602 sgn|U218034 GTCGATGGGAGATGTGCTGTGGAATCTTGAGTTTGCTCTGCAACTTCAGGAGAGTGCAGAGGAGTGTGGA Experimental SGN-U583204 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|17887381|gb|AAL40864.1| (e_value=0) receptor protein kinase-like protein [Capsicum annuum]; (*ATH) AT3G51550.1 (e_value=0) | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr3:19128563-19131840 REVERSE | Aliases: F26O13.190; (*SWP) sp|Q9LX66|Y3290_ARATH (e_value=1e-129) Probable receptor-like protein kinase At3g46290 OS=Arabidopsis thaliana GN=At3g46290; Solyc09g015830.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:11274733-11276682 transcript_region:SL2.40ch09:11274733..11276682- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein" 3 3 16 18 opLeV0100001603 sgn|U223614 TCGAAATGGACATGGACTCCTTACATCCGTACTCGTACTATAACTAGGTACTCATTGTGAGCGGTTGAAA Experimental SGN-U571251 Tomato 200607#2 [4 ESTs aligned] \N \N 3 1 16 18 opLeV0100001604 sgn|U239032 ATGAGGCTTCTTCAACGTGGCTACTCTGTCAACACCACCATTCGATCTCATCCAGATAGAAACAGAGATA Experimental SGN-U565549 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157349330|emb|CAO24476.1| (e_value=8e-54) unnamed; (*ATH) AT2G45400.1 (e_value=3e-41) | Symbol: None | dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family, similar to dihydroflavonol 4-reductase (SP:P51102), vestitone reductase (Medicago sativa, GI:973249) | chr2:18710903-18713319 REVERSE | Aliases: F4L23.9; (*SWP) sp|P51105|DFRA_GERHY (e_value=1e-34) Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=DFR; Solyc01g094070.2.1 genomic_reference:SL2.40ch01 gene_region:77418718-77420479 transcript_region:SL2.40ch01:77418718..77420479+ go_terms:GO:0016614,GO:0033729 functional_description:"Dihydroflavonol 4-reductase family (AHRD V1 **** D7LCI9_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain " 3 7 20 18 opLeV0100001605 sgn|U234593 ATTAAGGACATGTGTAATCGCGGCAGCCGTTGGATTAGTCATCGCTATTCCACCACCTACGGCTGTGATC Experimental SGN-U587185 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118484542|gb|ABK94145.1| (e_value=4e-29) unknown; (*ATH) AT2G39220.1 (e_value=1e-19) | Symbol: None | patatin family protein, similar to patatin-like latex allergen (Hevea brasiliensis)(PMID:10589016); contains patatin domain PF01734 | chr2:16381974-16384098 REVERSE | Aliases: T16B24.14, T16B24_14; Solyc10g078530.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59645667-59647481 transcript_region:SL2.40ch10:59645667..59647481- go_terms:GO:0006629,GO:0008152 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin " 3 5 20 18 opLeV0100001606 sgn|U220547 GGAGATGGACACACCTAACCAGAATGCAGAAAAACATAAGATTTCACCAAAAGCTTCACCCCAACCTTGA Experimental SGN-U563656 Tomato 200607#2 [12 ESTs aligned] \N \N 3 3 20 18 opLeV0100001607 sgn|U216035 AACTACTCCCTTCACTCTCTTCCTCTGCTCGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAG Experimental SGN-U567594 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157345523|emb|CAO14821.1| (e_value=3e-83) unnamed; (*ATH) AT3G01410.1 (e_value=2e-78) | Symbol: None | RNase H domain-containing protein, low similarity to GAG-POL precursor (Oryza sativa (japonica cultivar-group)) GI:5902445; contains Pfam profile: PF00075 RNase H | chr3:153446-155606 REVERSE | Aliases: T13O15.5, T13O15_5; (*SWP) sp|P64955|Y2228_MYCTU (e_value=2e-18) Uncharacterized protein Rv2228c/MT2287 OS=Mycobacterium tuberculosis GN=Rv2228c; \N \N 2 5 9 18 opLeV0100001608 sgn|U218756 GCCACAACAAGAGACCCTAGTCAACTACTTTCAAGTTGGCCTAAACTACTTGCGTTCCCTAGCAGCAAAC Experimental SGN-U585986 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|10567810|gb|AAG16759.1| (e_value=2e-129) putative glutathione S-transferase T4 [Lycopersicon esculentum]; (*ATH) AT2G29420.1 (e_value=7e-54) | Symbol: None | glutathione S-transferase, putative | chr2:12625013-12625976 REVERSE | Aliases: F16P2.20, F16P2_20; (*SWP) sp|P32110|GSTX6_SOYBN (e_value=8e-55) Probable glutathione S-transferase OS=Glycine max GN=HSP26-A; Solyc06g069040.2.1 genomic_reference:SL2.40ch06 gene_region:39229933-39234823 transcript_region:SL2.40ch06:39229933..39234823- go_terms:GO:0004364 functional_description:"Glutathione S-transferase (AHRD V1 **** Q84T17_PHAAT); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal " 2 3 9 18 opLeV0100001609 sgn|U218627 GGCTTAATTCCATACCGTCGGAATTTCCACGTTTTGCACCGGAGATTTGCTTCCGCGATTCGCCGGGTAA Experimental SGN-U591913 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|3043907|gb|AAC13259.1| (e_value=2e-30) IAA8; (*ATH) AT1G04250.1 (e_value=2e-28) Symbol: None | auxin-responsive protein / indoleacetic acid-induced protein 17 (IAA17), Identical to SP:P93830 Auxin-responsive protein IAA17 (Indoleacetic acid-induced protein 17) {Arabidopsis thaliana}; ESTs gb:H36782 and gb:F14074 come from this ... ; (*SWP) sp|P93830|IAA17_ARATH (e_value=1e-27) Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17; Solyc03g120390.2.1 genomic_reference:SL2.40ch03 gene_region:62863354-62864903 transcript_region:SL2.40ch03:62863354..62864903+ go_terms:GO:0005515,GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein " 2 1 9 18 opLeV0100001610 sgn|U233186 TAGCAACAATTTTTCCTTCTCGTGAAGAACCTGTAGCAAATTCAAGCATCAAAAGTGTCTTTCCAGCTCT Experimental SGN-U591640 Tomato 200607#2 [1 ESTs aligned] Solyc12g087830.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61766315-61777923 transcript_region:SL2.40ch12:61766315..61777923+ go_terms:GO:0005634 functional_description:"MADS box transcription factor (AHRD V1 ***- Q8L5F7_DAUCA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box " 2 5 13 18 opLeV0100001611 sgn|U214128 GATCGCGGCCCTGACCAAAGCCCCGGCCGCGACCCGTGGTGCTAGGGTTGTTATGGTGAAAGCAAGTTCT Experimental SGN-U592277 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118487685|gb|ABK95667.1| (e_value=1e-14) unknown; (*ATH) AT3G21055.1 (e_value=9e-11) | Symbol: None | photosystem II 5 kD protein, putative, identical to Swiss-Prot:Q39195 photosystem II 5 kDa protein, chloroplast precursor (PSII-T) (Arabidopsis thaliana) | chr3:7376643-7377192 REVERSE | Aliases: None; Solyc12g099650.1.1 evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:65050922-65051263 transcript_region:SL2.40ch12:65050922..65051263+ functional_description:"Photosystem II 5 kDa protein, chloroplastic (AHRD V1 ***- PST2_GOSHI)" 2 3 13 18 opLeV0100001612 sgn|U229633 AGTCACAAAGGTAGTAATAAATGCAACAGGTGAGCTCCACTCAAAGCTTAGTCCCAGAGCAGCCCTGGTG Experimental SGN-U585005 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|145332363|ref|NP_001078138.1| (e_value=2e-152) prenyltransferase; (*ATH) AT3G11945.1 (e_value=1e-154) |; Solyc03g051810.2.1 genomic_reference:SL2.40ch03 gene_region:18871399-18877676 transcript_region:SL2.40ch03:18871399..18877676+ go_terms:GO:0010357,GO:0010356,GO:0010355 functional_description:"Homogentisate phytyltransferase (AHRD V1 **-* D4ZR29_SPIPL); contains Interpro domain(s) IPR000537 UbiA prenyltransferase " 2 7 17 18 opLeV0100001613 sgn|U217626 GGAGAAAGCCAACGACGGTAGAAAGATAGAAGAGGAGAGCAACCATGAGTGTCCAACACAATGTTGATGT Experimental SGN-U575508 Tomato 200607#2 [56 ESTs aligned] (*GB) gi|160334210|gb|ABX24525.1| (e_value=0) omega-3; (*ATH) AT2G29980.1 (e_value=1e-171) | Symbol: None | omega-3 fatty acid desaturase, endoplasmic reticulum (FAD3), identical to SP:48623 | chr2:12788668-12792129 REVERSE | Aliases: F23F1.10, F23F1_10; (*SWP) sp|P48626|FAD3E_TOBAC (e_value=0) Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3; Solyc06g007130.2.1 genomic_reference:SL2.40ch06 gene_region:1182184-1184241 transcript_region:SL2.40ch06:1182184..1184241- go_terms:GO:0042389 functional_description:"Omega-3 fatty acid desaturase (AHRD V1 **** A9LNM9_SOLLC); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 " 2 5 17 18 opLeV0100001614 sgn|U213404 ACACATGTGATCTGGCATTGATGTGGTGGCTTATGAGTTAAAGAAAAAGTTCACTGTTGTTCAACTTCAC Experimental SGN-U580971 Tomato 200607#2 [87 ESTs aligned] (*GB) gi|157328180|emb|CAO17291.1| (e_value=0) unnamed; (*ATH) AT1G02205.2 (e_value=0) | Symbol: None | CER1 protein, identical to maize gl1 homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467 from (Arabidopsis thaliana) | chr1:418778-422438 FORWARD | Aliases: None; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=1e-101) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2; Solyc03g065250.2.1 genomic_reference:SL2.40ch03 gene_region:38386004-38392028 transcript_region:SL2.40ch03:38386004..38392028- go_terms:GO:0009924 functional_description:"CER1 (AHRD V1 **-- B6TFH3_MAIZE); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase " 2 3 17 18 opLeV0100001615 sgn|U219323 AAAATCTGGTTCAAGTTCAAGATTCTGTTGTGGCCCTTCCTGAACCTGCTCTCATGTTTTCACCCCGACC Experimental SGN-U595774 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157342618|emb|CAO65330.1| (e_value=3e-99) unnamed; (*ATH) AT2G26190.1 (e_value=6e-89) | Symbol: None | calmodulin-binding family protein, contains Pfam profile PF00612: IQ calmodulin-binding motif | chr2:11154717-11157588 REVERSE | Aliases: T1D16.17, T1D16_17; Solyc07g040710.2.1 genomic_reference:SL2.40ch07 gene_region:46741652-46743922 transcript_region:SL2.40ch07:46741652..46743922+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** A2I5F3_BETVU)" 2 1 17 18 opLeV0100001616 sgn|U232723 CTTGTCTCCGCCAATCTCAAAATGCTTGCACCTCTTGATTGGGTGTTGCG Experimental SGN-U592864 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118484797|gb|ABK94266.1| (e_value=9e-19) unknown; (*ATH) AT3G23390.1 (e_value=8e-20) | Symbol: None | 60S ribosomal protein L36a/L44 (RPL36aA), similar to ribosomal protein L41 GB:AAA34366 from (Candida maltosa) | chr3:8375382-8376397 FORWARD | Aliases: MLM24.22; (*SWP) sp|Q96499|RL44_GOSHI (e_value=2e-19) 60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44; Solyc06g071530.2.1 genomic_reference:SL2.40ch06 gene_region:40431000-40433125 transcript_region:SL2.40ch06:40431000..40433125+ go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L44 (AHRD V1 ***- B9RH89_RICCO); contains Interpro domain(s) IPR000552 Ribosomal protein L44e " 4 7 9 18 opLeV0100001617 sgn|U219776 AACAATTGTTGGTAACAAAAAATCCCCTTTTGAGTCTTTAAAATCCTCATCTCCACAAGCCCTTTCTGGG Experimental SGN-U584436 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|157350936|emb|CAO41051.1| (e_value=6e-135) unnamed; (*ATH) AT1G14390.1 (e_value=4e-106) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, similar to putative receptor-like protein kinase GI:2947063 from (Arabidopsis thaliana) | chr1:4924272-4926789 FORWARD | Aliases: F14L17.16, F14L17_16; (*SWP) sp|Q9ZVR7|PSKR_ARATH (e_value=4e-15) Putative phytosulfokine receptor OS=Arabidopsis thaliana GN=PSKR; Solyc05g007120.2.1 genomic_reference:SL2.40ch05 gene_region:1682919-1686805 transcript_region:SL2.40ch05:1682919..1686805- go_terms:GO:0004672 functional_description:"Receptor like kinase, RLK" 4 5 9 18 opLeV0100001618 sgn|U230037 GTATCAACATTATCGCTAACCATGTAGATACACCTAGCAACGGGAGTGAAGCATGGGAAATCGACAATGC Experimental SGN-U569797 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|115480473|ref|NP_001063830.1| (e_value=4e-58) Os09g0544300; (*ATH) AT4G38470.1 (e_value=2e-56) | Symbol: None | protein kinase family protein, similar to protein kinase (gi:170047) from Glycine max; contains Pfam protein kinase domain PF00069 | chr4:17999426-18003675 FORWARD | Aliases: F20M13.30, F20M13_30; (*SWP) sp|Q7T6Y2|YR831_MIMIV (e_value=4e-24) Putative serine/threonine-protein kinase/receptor R831 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R831; Solyc12g094410.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62972424-62976753 transcript_region:SL2.40ch12:62972424..62976753+ go_terms:GO:0008152,GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7MEZ1_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like " 4 3 9 18 opLeV0100001619 sgn|U222917 AGAAAGCAAGTCGCTGCACAAACCCGAAGCTTTGAAATCGATGCGTGATCGCATAAATTCAGATATCGTA Experimental SGN-U577099 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|5912543|emb|CAB56195.1| (e_value=2e-150) Knolle [Capsicum annuum]; (*ATH) AT1G08560.1 (e_value=1e-108) Symbol: None | syntaxin-related protein KNOLLE (KN) / syntaxin 111 (SYP111), identical to SP:Q42374 Syntaxin-related protein KNOLLE (Syntaxin 111) (AtSYP111) {Arabidopsis thaliana}; BAC F22O13 has a deletion of a cytosine at position 7887 | chr1:270... ; (*SWP) sp|Q42374|SY111_ARATH (e_value=1e-107) Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN; Solyc06g053760.2.1 genomic_reference:SL2.40ch06 gene_region:33112734-33114482 transcript_region:SL2.40ch06:33112734..33114482- go_terms:GO:0008565 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE " 4 1 9 18 opLeV0100001620 sgn|U217685 GCGGGTATAAGCCTCAGAGGACCAGTAGTGGGTGGTTACAGGACATTTGCAGTGACCAAAAGGGCTTTAC Experimental SGN-U582646 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|400992|sp|P30956|RK28_TOBAC (e_value=7e-59) 50S RIBOSOMAL PROTEIN L28, CHLOROPLAST PRECURSOR (CL28); (*ATH) AT2G33450.1 (e_value=1e-42) | Symbol: None | 50S ribosomal protein L28, chloroplast (CL28) | chr2:14180655-14181609 FORWARD | Aliases: F4P9.22, F4P9_22; (*SWP) sp|P30956|RK28_TOBAC (e_value=5e-60) 50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum GN=RPL28; Solyc09g090410.2.1 genomic_reference:SL2.40ch09 gene_region:65281878-65286083 transcript_region:SL2.40ch09:65281878..65286083- go_terms:GO:0005840 functional_description:"50S ribosomal protein L28 (AHRD V1 ***- B6TFW5_MAIZE); contains Interpro domain(s) IPR001383 Ribosomal protein L28 " 4 7 13 18 opLeV0100001621 sgn|U221868 CGATATAGATCGATTGGTTAGGCTTAATTTGGATTCATGGACCGGCAGGGTTTTCCTCATGGACGAGGCT Experimental SGN-U564608 Tomato 200607#2 [26 ESTs aligned] (*GB) gi|45260636|emb|CAD27417.1| (e_value=0) cytochrome P450 [Nicotiana tabacum]; (*ATH) AT5G05690.1 (e_value=0) | Symbol: None | cytochrome P450 90A1 (CYP90A1) (CYP90) (CPD), identical to Cytochrome P450 90A1 (SP:Q42569) (Arabidopsis thaliana) | chr5:1702689-1706781 REVERSE | Aliases: MJJ3.9, MJJ3_9; (*SWP) sp|Q42569|C90A1_ARATH (e_value=0) Cytochrome P450 90A1 OS=Arabidopsis thaliana GN=CYP90A1; Solyc06g051750.2.1 genomic_reference:SL2.40ch06 gene_region:31793440-31800469 transcript_region:SL2.40ch06:31793440..31800469- go_terms:GO:0019825,GO:0010295 functional_description:"Cytochrome P450" 4 5 13 18 opLeV0100001622 sgn|U241989 TTTTCGGCGGAAACTTTGCAAACGGTTTGCGAAAAAACCCCTAGCGGGAACGGCCCAAAATTCCCCCCGG Experimental SGN-U599296 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157329738|emb|CAO41624.1| (e_value=8e-15) unnamed; (*ATH) AT1G27980.1 (e_value=9e-15) Symbol: None | pyridoxal-dependent decarboxylase family protein, similar to sphingosine-1-phosphate lyase (Homo sapiens) GI:10129683; contains Pfam profile PF00282: Pyridoxal-dependent decarboxylase conserved domain | chr1:9748742-9752995 FORWARD | ... ; (*SWP) sp|Q9C509|SGPL_ARATH (e_value=7e-14) Sphingosine-1-phosphate lyase OS=Arabidopsis thaliana GN=At1g27980; \N \N 4 3 13 18 opLeV0100001623 sgn|U240470 CATTTCTGGATTTGAAGACTCGACTGCTTTTGTCCGCACTTTCAGAGCACGCTCCCTGAATGCAGCCTGA Experimental SGN-U588708 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157352998|emb|CAO44888.1| (e_value=3e-31) unnamed; (*ATH) AT4G16150.1 (e_value=2e-28) | Symbol: None | calmodulin-binding protein, similar to anther ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum) | chr4:9148239-9153064 FORWARD | Aliases: DL4115W, FCAALL.291; (*SWP) sp|O23463|CMTA5_ARATH (e_value=1e-27) Calmodulin-binding transcription activator 5 OS=Arabidopsis thaliana GN=CMTA5; Solyc12g099340.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64864264-64872889 transcript_region:SL2.40ch12:64864264..64872889- go_terms:GO:0016563 functional_description:"Calmodulin-binding transcription activator 5 (AHRD V1 **** D7MA72_ARALY); contains Interpro domain(s) IPR005559 CG-1 " 4 1 13 18 opLeV0100001624 sgn|U225641 CCGAATTCACACAGGTCACAGCTGATGTAGAGGCGGAATCTGTTATCATCGGCGAGAGAAACAAAGCTGC Experimental SGN-U572882 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157342813|emb|CAO65525.1| (e_value=2e-179) unnamed; (*ATH) AT5G19540.1 (e_value=7e-163) | Symbol: None | expressed protein | chr5:6595704-6597891 FORWARD | Aliases: T20D1.60, T20D1_60; Solyc12g007090.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1532751-1536367 transcript_region:SL2.40ch12:1532751..1536367- functional_description:"Os08g0387500 protein (Fragment) (AHRD V1 ***- Q0J5Y7_ORYSJ)" 4 7 17 18 opLeV0100001625 sgn|U216044 GAACTTTCCCTGTTTCAGCCTTTGAACTTGATCTCCCTAAAAAGGAAGTCAAAGAAGAAGCCAAAGAAGT Experimental SGN-U566629 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|118486251|gb|ABK94967.1| (e_value=4e-43) unknown; (*ATH) AT1G56580.1 (e_value=2e-40) | Symbol: None | expressed protein, contains Pfam profile PF04398: Protein of unknown function, DUF538 | chr1:21201924-21202621 REVERSE | Aliases: F25P12.97, F25P12_97; Solyc01g100760.2.1 genomic_reference:SL2.40ch01 gene_region:82474767-82475519 transcript_region:SL2.40ch01:82474767..82475519+ go_terms:GO:0005515 functional_description:"Susceptibility homeodomain transcription factor (Fragment) (AHRD V1 *-*- Q8SAA7_ORYSA); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 " 4 5 17 18 opLeV0100001626 sgn|U230124 TAACCATATTTAATAGATATCCTAGCATGTTGAGTAAAAGCCAGCTGAGGATCAGGCCAACTCCTATGCA Experimental SGN-U575187 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|42571101|ref|NP_973624.1| (e_value=2e-28) origin recognition complex subunit 2 (ORC2) [Arabidopsis thaliana]; (*ATH) AT2G37560.2 (e_value=2e-30) | Symbol: None | origin recognition complex subunit 2 (ORC2), identical to origin recognition complex subunit 2 (ORC2) SP:Q38899 from (Arabidopsis thaliana) | chr2:15765726-15768287 FORWARD | Aliases: None; (*SWP) sp|Q38899|ORC2_ARATH (e_value=1e-29) Origin recognition complex subunit 2 OS=Arabidopsis thaliana GN=ORC2; Solyc06g073510.2.1 genomic_reference:SL2.40ch06 gene_region:41699563-41703139 transcript_region:SL2.40ch06:41699563..41703139+ go_terms:GO:0042802 functional_description:"Origin recognition complex subunit 2 (AHRD V1 ***- Q9XFD6_ORYSJ); contains Interpro domain(s) IPR007220 Origin recognition complex subunit 2 " 4 1 17 18 opLeV0100001627 sgn|U234141 CCTTTGGAGGCAATCAGCAGTTCTACTCTAACAACCAGGCAATGCATACA Experimental SGN-U584071 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157327974|emb|CAO16940.1| (e_value=6e-114) unnamed; (*ATH) AT1G06070.1 (e_value=3e-102) Symbol: None | bZIP transcription factor, putative (bZIP69), similar to transcriptional activator RF2a GB:AF005492 GI:2253277 from (Oryza sativa); contains Pfam profile PF00170: bZIP transcription factor | chr1:1834828-1837647 REVERSE | Aliases: T21... ; (*SWP) sp|Q04088|POF21_ARATH (e_value=2e-88) Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21; Solyc06g053350.2.1 genomic_reference:SL2.40ch06 gene_region:32588534-32595646 transcript_region:SL2.40ch06:32588534..32595646+ go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 *-*- D7LF63_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper " 2 7 10 18 opLeV0100001628 sgn|U242333 GAAAATATCAAAAGAGCACTGAGCTTCTCATCCGGAAGATGCGCATTCCAAAGGCTTGTGCGTGAAATTG Experimental SGN-U579782 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|145334271|ref|NP_001078516.1| (e_value=7e-71) histone; (*ATH) AT4G40030.2 (e_value=5e-73) |; (*SWP) sp|Q71U98|H33_ORYCO (e_value=1e-70) Histone H3.3 OS=Oryza coarctata; Solyc04g081150.2.1 genomic_reference:SL2.40ch04 gene_region:62766596-62768699 transcript_region:SL2.40ch04:62766596..62768699- go_terms:GO:0042802 functional_description:"Histone H3 (AHRD V1 ***- A8MRL0_ARATH); contains Interpro domain(s) IPR000164 Histone H3 " 2 5 10 18 opLeV0100001629 sgn|U223591 TATTCGTCCCAGAAGTATACAAATCGTTCTTCAGAGATGCACAGACACTGGCTGGTGCACAATTCGATTA Experimental SGN-U571131 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157347424|emb|CAO18061.1| (e_value=7e-87) unnamed; (*ATH) AT5G02790.1 (e_value=5e-81) | Symbol: None | In2-1 protein, putative, similar to In2-1, Zea mays, EMBL:X58573 | chr5:632827-635088 FORWARD | Aliases: F9G14.100, F9G14_100; (*SWP) sp|P49248|IN21_MAIZE (e_value=2e-67) Protein IN2-1 OS=Zea mays GN=IN2-1; Solyc09g007150.2.1 genomic_reference:SL2.40ch09 gene_region:775043-778675 transcript_region:SL2.40ch09:775043..778675+ go_terms:GO:0045174 functional_description:"Glutathione S-transferase (AHRD V1 **** Q76KW1_PEA); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal " 2 3 10 18 opLeV0100001630 sgn|U231563 GGAAAGCGCAGTGCCTATGCCTATGATGAAGATTTAGACAATGTTGATCCTGAAACTGTCGCGGTGAAAC Experimental SGN-U567757 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|15218697|ref|NP_171804.1| (e_value=5e-152) protein destination factor -related [Arabidopsis thaliana]; (*ATH) AT1G03050.1 (e_value=3e-154) Symbol: None | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related, contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain; similar to CLATHRIN COAT ASSEMBLY PROTEIN AP180 - Mus musculu... ; (*SWP) sp|Q9SA65|CAP4_ARATH (e_value=3e-153) Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050; Solyc11g044860.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36244948-36246538 transcript_region:SL2.40ch11:36244948..36246538+ go_terms:GO:0030118,GO:0005543 functional_description:"Clathrin assembly protein-like (AHRD V1 **-- Q8LJJ6_ORYSJ); contains Interpro domain(s) IPR011417 ANTH " 2 1 10 18 opLeV0100001631 sgn|U234705 CCTGCGGAAAGTACTCCAGACGTGGCAGCATTAACCACAGCATCATAATGGGAGGTATCACCTCTAATCA Experimental SGN-U566818 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|33312438|gb|AAQ04061.1| (e_value=2e-80) 6,7-dimethyl-8-ribityllumazine synthase precursor [Nicotiana tabacum]; (*ATH) AT2G44050.1 (e_value=7e-62) Symbol: None | 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase, identical to 6,7-dimethyl-8-ribityllumazine synthase, chloroplast (precursor) SP:O80575 from (Arabidopsis thaliana) | chr2:18231342-182... ; (*SWP) sp|O80575|RISB_ARATH (e_value=6e-61) 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g44050; Solyc08g015660.2.1 genomic_reference:SL2.40ch08 gene_region:5104703-5114545 transcript_region:SL2.40ch08:5104703..5114545+ go_terms:GO:0000906 functional_description:"6 7-dimethyl-8-ribityllumazine synthase (AHRD V1 **** Q5ZQU1_TOBAC); contains Interpro domain(s) IPR002180 6,7-dimethyl-8-ribityllumazine synthase " 2 7 14 18 opLeV0100001632 L16582 GGGTGATGCAGAGCGATAGCCCTCACAGCTTTGCGTGACTCGCTCTGTCCCTGGTCCATCGTGTGCTGAT Experimental SGN-U578034 Tomato 200607#2 [225 ESTs aligned] (*GB) gi|6646840|emb|CAB64599.1| (e_value=0) arginine decarboxylase 1 [Datura stramonium]; (*ATH) AT4G34710.2 (e_value=0) | Symbol: None | arginine decarboxylase 2 (SPE2), identical to SP:O23141 Arginine decarboxylase 2 (EC 4.1.1.19) (ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana} | chr4:16560067-16562936 REVERSE | Aliases: None; (*SWP) sp|P49726|SPE1_SOLLC (e_value=0) Arginine decarboxylase OS=Solanum lycopersicum; Solyc01g110430.2.1 genomic_reference:SL2.40ch01 gene_region:88907042-88909861 transcript_region:SL2.40ch01:88907042..88909861- functional_description:"Unknown Protein (AHRD V1)" 2 5 14 18 opLeV0100001633 sgn|U219713 TTCCAGCAAGGGGACGTGTCTTTCGTCTTTGGAGCGTCGTTCACGCCTTGGTGTGAGGTGCGTACAAGTC Experimental SGN-U584894 Tomato 200607#2 [7 ESTs aligned] Solyc04g051100.2.1 genomic_reference:SL2.40ch04 gene_region:48789745-48790593 transcript_region:SL2.40ch04:48789745..48790593- functional_description:"Unknown Protein (AHRD V1)" 2 3 14 18 opLeV0100001634 sgn|U218072 TGGAAGTTGCTCCATTGCTTTTGTATCCCATCTTTGAATAGCAAGAGTGAAGAGTTCCAACTCATCAAGT Experimental SGN-U581284 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|62132627|gb|AAX69063.1| (e_value=0) monoterpene; (*ATH) AT3G25810.1 (e_value=4e-129) | Symbol: None | myrcene/ocimene synthase, putative, similar to GI:9957293; contains Pfam profile: PF01397 terpene synthase family | chr3:9432042-9435081 FORWARD | Aliases: K13N2.7; (*SWP) sp|O81193|SSS_SALOF (e_value=1e-134) (+)-sabinene synthase, chloroplastic OS=Salvia officinalis; Solyc01g105890.2.1 genomic_reference:SL2.40ch01 gene_region:85673319-85676126 transcript_region:SL2.40ch01:85673319..85676126+ go_terms:GO:0034768,GO:0050551 functional_description:"(E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain " 2 1 14 18 opLeV0100001635 sgn|U219795 CGTACATCACAGCCTCGATGCAAATACCCGATTCCTCGAGCCACTCCAAGAATAATGTCATACTTCCTCT Experimental SGN-U575322 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157355875|emb|CAO49732.1| (e_value=1e-126) unnamed; (*ATH) AT5G38280.1 (e_value=2e-90) | Symbol: None | serine/threonine protein kinase (PR5K), identical to receptor serine/threonine kinase PR5K gi:1235680:gb:AAC49208 | chr5:15310351-15314553 REVERSE | Aliases: MXA21.170, MXA21_170; (*SWP) sp|Q9SYS7|CRK39_ARATH (e_value=9e-55) Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana GN=CRK39; Solyc02g079610.2.1 genomic_reference:SL2.40ch02 gene_region:38702972-38704500 transcript_region:SL2.40ch02:38702972..38704500+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor serine/threonine kinase (AHRD V1 **** O49202_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 2 7 18 18 opLeV0100001636 sgn|U242063 GACAGTGGGTATGTGCTACCAGGAAAAAATCACTGCACTCTGTCTTTCGATGAACTGGGAATCAAATCAT Experimental SGN-U585199 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|157352365|emb|CAO43428.1| (e_value=0) unnamed; (*ATH) AT2G32230.1 (e_value=0) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr2:13686619-13689313 REVERSE | Aliases: F22D22.2, F22D22_2; (*SWP) sp|O15091|K0391_HUMAN (e_value=2e-11) Uncharacterized protein KIAA0391 OS=Homo sapiens GN=KIAA0391; Solyc06g065500.2.1 genomic_reference:SL2.40ch06 gene_region:37276957-37282094 transcript_region:SL2.40ch06:37276957..37282094- go_terms:GO:0004526,GO:0005215 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LEW3_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE " 2 5 18 18 opLeV0100001637 sgn|U217507 GTGTGTTGCTATTAGAGCTCTTGACAGGCAAGTCCCCCATCCATACAACAAACGGAGATGAGGTCATACA Experimental SGN-U583982 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157358205|emb|CAO65842.1| (e_value=0) unnamed; (*ATH) AT4G23740.1 (e_value=0) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, receptor-like protein kinase - Arabidopsis thaliana RKL1, PID:g4008006 | chr4:12366472-12369348 FORWARD | Aliases: F9D16.210, F9D16_210; (*SWP) sp|Q9SUQ3|Y4374_ARATH (e_value=0) Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740; Solyc08g081940.2.1 genomic_reference:SL2.40ch08 gene_region:62017281-62021205 transcript_region:SL2.40ch08:62017281..62021205+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK" 2 3 18 18 opLeV0100001638 sgn|U223802 CATAACACTGCAACCTTGAGCTCACACTCATCTCCTCAGCAACCATCAGCAATGGAGAATCAGAGTTTCA Experimental SGN-U583894 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|118483269|gb|ABK93537.1| (e_value=3e-40) unknown; (*ATH) AT5G08130.1 (e_value=2e-36) | Symbol: None | basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain | chr5:2606201-2609607 REVERSE | Aliases: T22D6.70, T22D6_70; (*SWP) sp|Q9LEZ3|BIM1_ARATH (e_value=2e-35) Transcription factor BIM1 OS=Arabidopsis thaliana GN=BIM1; Solyc06g069370.2.1 genomic_reference:SL2.40ch06 gene_region:39510571-39515377 transcript_region:SL2.40ch06:39510571..39515377+ go_terms:GO:0005515,GO:0003700 functional_description:"Transcription factor protein (AHRD V1 *-** Q4H2R4_CIOIN); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding " 2 1 18 18 opLeV0100001639 sgn|U226051 CCCTCTTTAGTTCATCTTTATGAAGCATCTCGTCGCCCTTATGGCCTTGTTTCTAAAGCCCAGTGTAGCT Experimental SGN-U573613 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157342977|emb|CAO65689.1| (e_value=9e-72) unnamed; (*ATH) AT3G33520.1 (e_value=2e-62) | Symbol: None | actin-related protein 6 (ARP6), nearly identical to actin-related protein 6 (ARP6) (Arabidopsis thaliana) GI:21427467; contains Pfam profile PF00022: Actin | chr3:14104642-14106535 REVERSE | Aliases: T4P3.8; (*SWP) sp|Q8LGE3|ARP6_ARATH (e_value=2e-61) Actin-related protein 6 OS=Arabidopsis thaliana GN=ARP6; Solyc05g018600.2.1 genomic_reference:SL2.40ch05 gene_region:22403561-22406376 transcript_region:SL2.40ch05:22403561..22406376- go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q0IFH2_AEDAE); contains Interpro domain(s) IPR004000 Actin/actin-like " 4 7 10 18 opLeV0100001640 sgn|U240160 GACTCTGGAGATAGTGTGATGAAAGAATTCATGGACTACCAGAACTAAGATTGTGGACTGTGCTAATAAG Experimental SGN-U599871 Tomato 200607#2 [1 ESTs aligned] \N \N 4 5 10 18 opLeV0100001641 sgn|U217375 AGATTTCTGCTACTATTACATAAAGAGTGTCATGAGCGGTCAACTTTTGGTCCGTCTGCCGCAGCCTGTA Experimental SGN-U579793 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|77745477|gb|ABB02637.1| (e_value=5e-138) ER lumen retaining receptor family-like protein [Solanum tuberosum]; (*ATH) AT3G25160.1 (e_value=1e-93) Symbol: None | ER lumen protein retaining receptor family protein, similar to SP:P24390 ER lumen protein retaining receptor 1 (KDEL receptor 1) {Homo sapiens}; contains Pfam profile PF00810: ER lumen protein retaining receptor | chr3:9160175-9162074... ; (*SWP) sp|Q09473|ERD22_CAEEL (e_value=3e-30) Putative ER lumen protein retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4; Solyc09g059270.2.1 genomic_reference:SL2.40ch09 gene_region:49758568-49762279 transcript_region:SL2.40ch09:49758568..49762279+ go_terms:GO:0005046 functional_description:"ER lumen retaining receptor family-like protein (AHRD V1 ***- Q38JH5_SOLTU); contains Interpro domain(s) IPR000133 ER lumen protein retaining receptor " 4 3 10 18 opLeV0100001642 sgn|U224043 GAGCGAACAAGGCGTAAACAATTGGGCTGGTCAAAGTTCTTCCAGATCATCGATGGAATTGCACGTGGGC Experimental SGN-U586593 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157338088|emb|CAO39132.1| (e_value=4e-64) unnamed; (*ATH) AT4G27290.1 (e_value=8e-64) Symbol: None | S-locus protein kinase, putative, similar to S-receptor kinase gi:392557:gb:AAA62232; contains Pfam domains PF00954: S-locus glycoprotein family, PF00069: Protein kinase domain and PF01453: Lectin (probable mannose binding) | chr4:136... ; (*SWP) sp|Q8GYA4|CRK10_ARATH (e_value=6e-56) Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10; \N \N 4 1 10 18 opLeV0100001643 sgn|U214702 AAACACAATCCCAGTCCATCCTTATGGATGGACCGCATTGCGATTTCGGGCCGATAATCCAGGAGTTTGG Experimental SGN-U581990 Tomato 200607#2 [45 ESTs aligned] (*GB) gi|66475040|gb|AAY47050.1| (e_value=0) ascorbate oxidase [Lycopersicon esculentum]; (*ATH) AT4G39830.1 (e_value=0) | Symbol: None | L-ascorbate oxidase, putative, similar to SP:P14133 L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) {Cucumis sativus}; contains Pfam profile PF00394: Multicopper oxidase | chr4:18478923-18481337 FORWARD | Aliases: T5J17.9; (*SWP) sp|P14133|ASO_CUCSA (e_value=8e-168) L-ascorbate oxidase OS=Cucumis sativus; Solyc04g054690.2.1 genomic_reference:SL2.40ch04 gene_region:52198899-52201343 transcript_region:SL2.40ch04:52198899..52201343- go_terms:GO:0005576,GO:0055114 functional_description:"Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017760 L-ascorbate oxidase, plants " 4 7 14 18 opLeV0100001644 sgn|U223036 ACCGATGTCCAACGCCACTTCCATACCCCCTATCGGTATGAACATCCGTAATCAGTCTGCTGGTTTCAAC Experimental SGN-U581431 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|22652125|gb|AAN03626.1|AF406702_1 (e_value=0) BEL1-related; (*ATH) AT2G35940.2 (e_value=2e-106) | Symbol: None | homeodomain-containing protein, contains 'Homeobox' domain signature, Prosite:PS00027 | chr2:15095912-15099255 REVERSE | Aliases: None; (*SWP) sp|Q9SJ56|BLH1_ARATH (e_value=2e-105) BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1; Solyc01g007070.2.1 genomic_reference:SL2.40ch01 gene_region:1602912-1606381 transcript_region:SL2.40ch01:1602912..1606381- go_terms:GO:0003677 functional_description:"BEL1-like homeodomain protein 1 (AHRD V1 **-- BLH1_ARATH); contains Interpro domain(s) IPR006563 POX " 4 5 14 18 opLeV0100001645 sgn|U225572 CTGGATTCGAACTCCAATTGTTGGAGGGGCATGGAAGATTAGTATCTTGCCTCGTATGACTTAACAGTGA Experimental SGN-U572849 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147846786|emb|CAN78503.1| (e_value=1e-27) hypothetical; (*ATH) AT4G21470.1 (e_value=4e-26) | Symbol: ATFMN/FHY | Bifunctional enzyme that catalyzes hydrolysis of FMN to riboflavin, and phosphorylation of riboflavin to FMN. | chr4:11431135-11433332 FORWARD | Aliases: F18E5.90, F18E5_90, ATFMN/FHY; (*SWP) sp|O76206|RIFK_DROME (e_value=1e-11) Putative riboflavin kinase OS=Drosophila melanogaster GN=anon-84Ea; \N \N 4 3 14 18 opLeV0100001646 sgn|U226869 ACACTCAAGTAGCGATTGCTTGAGCATGTACTCGTCTCACCACCCTGTATAATCGACGTTAAGGATGAGA Experimental SGN-U580457 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|3334219|sp|O23920|HPPD_DAUCA (e_value=8e-164) 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase); (*ATH) AT1G06570.1 (e_value=2e-159) | Symbol: None | 4-hydroxyphenylpyruvate dioxygenase (HPD), identical to 4-hydroxyphenylpyruvate dioxygenase (HPD) SP:P93836 (Arabidopsis thaliana (Mouse-ear cress)) | chr1:2011885-2013544 REVERSE | Aliases: F12K11.9, F12K11_9; (*SWP) sp|O23920|HPPD_DAUCA (e_value=5e-165) 4-hydroxyphenylpyruvate dioxygenase OS=Daucus carota; Solyc07g045050.2.1 genomic_reference:SL2.40ch07 gene_region:55467514-55473804 transcript_region:SL2.40ch07:55467514..55473804+ go_terms:GO:0003868,GO:0016763 functional_description:"4-hydroxyphenylpyruvate dioxygenase (AHRD V1 **** B7X935_HEVBR); contains Interpro domain(s) IPR005956 4-hydroxyphenylpyruvate dioxygenase " 4 1 14 18 opLeV0100001647 sgn|U223651 AGGTTCTCGAATGAACTTCAGAACTTAGGACGATTACGCCACAGAAACCTGGTGCAACTCCGCGGATGGT Experimental SGN-U566389 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|147767429|emb|CAN66719.1| (e_value=1e-137) hypothetical; (*ATH) AT2G32800.1 (e_value=2e-103) | Symbol: None | protein kinase family protein, contains dual protein kinase domains, Pfam:PF00069 | chr2:13923529-13926629 FORWARD | Aliases: F24L7.6, F24L7_6; (*SWP) sp|Q9M0X5|CRK25_ARATH (e_value=6e-39) Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25; \N \N 4 7 18 18 opLeV0100001648 sgn|U213307 GCAGCAAAATCAGTTCCAATGGCTGCAACTGCTTAAGCTTTGGTAGGAACAAAGACTGCCAAGCTGGTTC Experimental SGN-U577906 Tomato 200607#2 [70 ESTs aligned] (*GB) gi|118481185|gb|ABK92544.1| (e_value=6e-178) unknown; (*ATH) AT5G50850.1 (e_value=3e-171) Symbol: None | pyruvate dehydrogenase E1 component beta subunit, mitochondrial / PDHE1-B (PDH2), identical to SP:Q38799 Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor (EC 1.2.4.1) (PDHE1-B) {Arabidopsis thaliana} | chr5:20... ; (*SWP) sp|Q38799|ODPB_ARATH (e_value=3e-170) Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2; Solyc03g097680.2.1 genomic_reference:SL2.40ch03 gene_region:53455935-53462816 transcript_region:SL2.40ch03:53455935..53462816+ go_terms:GO:0004739 functional_description:"Pyruvate dehydrogenase E1 component subunit beta (AHRD V1 **-* B6T6H3_MAIZE); contains Interpro domain(s) IPR005475 Transketolase, central region " 4 5 18 18 opLeV0100001649 sgn|U218433 CAAGGAGCAGTAGTAGTGGAGAGGGATACAGGTTGAGAAATCTGAAGTGCAATTCCACACCTGATGTCCT Experimental SGN-U566900 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|157339387|emb|CAO43928.1| (e_value=3e-98) unnamed; (*ATH) AT5G24870.2 (e_value=2e-57) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, similar to Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) | chr5:8544788-8547116 REVERSE | Aliases: None; (*SWP) sp|Q0V9R0|RN111_XENTR (e_value=6e-11) E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111; Solyc12g096420.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63686253-63689020 transcript_region:SL2.40ch12:63686253..63689020+ go_terms:GO:0008270 functional_description:"RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type " 4 3 18 18 opLeV0100001650 sgn|U213108 CCCTTGAGAGGGTGGCACCTCTTACACACGCAGTTGGAAATGTGTTGAAACGTGTGTTCGTGATTGGATT Experimental SGN-U581538 Tomato 200607#2 [108 ESTs aligned] (*GB) gi|231903|sp|P29463|TPT_SOLTU (e_value=0) Triose; (*ATH) AT5G46110.1 (e_value=3e-158) Symbol: None | phosphate/triose-phosphate translocator, putative, identical to phosphate/triose-phosphate translocator precursor (Arabidopsis thaliana) gi:3983125:gb:AAC83815; similar to triose phosphate/phosphate translocator, chloroplast precursor... ; (*SWP) sp|P29463|TPT_SOLTU (e_value=0) Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT; Solyc10g008980.2.1 genomic_reference:SL2.40ch10 gene_region:3003367-3007677 transcript_region:SL2.40ch10:3003367..3007677+ go_terms:GO:0008524 functional_description:"Triose phosphate/phosphate translocator (AHRD V1 **** Q9MSB6_MESCR); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator " 4 1 18 18 opLeV0100001651 sgn|U214909 CTGGAGTACCGAAAGAGGGTGCGCCTGCAGTCTAAGCAGTATCCACCTCTTGTTTAAAAGAATGTTTGTC Experimental SGN-U580409 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|37719049|emb|CAE45567.1| (e_value=9e-75) SUMO E2 conjugating enzyme SCE1 [Nicotiana benthamiana]; (*ATH) AT3G57870.1 (e_value=1e-70) Symbol: EMB1637 | ubiquitin-conjugating enzyme, putative, strong similarity to SP:P50550 Ubiquitin-like protein SUMO-1 conjugating enzyme (EC 6.3.2.19) (SUMO- 1-protein ligase) (Ubiquitin carrier protein) (Ubiquitin-conjugating enzyme UbcE2A) {Xenop... ; (*SWP) sp|Q9NGP4|UBC9_DICDI (e_value=3e-48) Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9; Solyc02g093110.2.1 genomic_reference:SL2.40ch02 gene_region:48605264-48609246 transcript_region:SL2.40ch02:48605264..48609246- go_terms:GO:0019789 functional_description:"Ubiquitin-conjugating enzyme E2 I (AHRD V1 ***- B6U359_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 " 2 7 11 18 opLeV0100001652 AF320029 ACATCGACAACTTAGAGGATTGTCATCGATCACGTTTAACAAGCTGCAGATGAGTGAATATGGCTGCATC Experimental SGN-U584801 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|14485577|gb|AAK63013.1|AF320029_1 (e_value=2e-122) heme; (*ATH) AT2G26550.1 (e_value=2e-55) | Symbol: None | heme oxygenase 2 (HO2), similar to heme oxygenase 2 (Arabidopsis thaliana) gi:4530595:gb:AAD22109 | chr2:11298662-11300504 REVERSE | Aliases: T9J22.22, T9J22_22; Solyc04g079290.2.1 genomic_reference:SL2.40ch04 gene_region:61391519-61394711 transcript_region:SL2.40ch04:61391519..61394711+ go_terms:GO:0020037 functional_description:"Heme oxygenase 2 (AHRD V1 **** Q94FW6_SOLLC); contains Interpro domain(s) IPR016951 Haem oxygenase (decyclizing), plant " 2 5 11 18 opLeV0100001653 sgn|U215568 CCTTGCTGGGGCGGCTGTACGGTGGGACCGGGAATTGTGCGCTCACCCTGGTAAGCAAGATAAAGGATAG Experimental SGN-U586203 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157347843|emb|CAO22430.1| (e_value=4e-75) unnamed; (*ATH) AT3G63000.1 (e_value=3e-70) | Symbol: None | NPL4 family protein, contains Pfam domain, PF05021: NPL4 family | chr3:23294584-23296515 FORWARD | Aliases: T20O10.100; (*SWP) sp|Q9LYC2|NPL41_ARATH (e_value=2e-69) NPL4-like protein 1 OS=Arabidopsis thaliana GN=At3g63000; Solyc06g084440.2.1 genomic_reference:SL2.40ch06 gene_region:45835298-45839256 transcript_region:SL2.40ch06:45835298..45839256- functional_description:"Nuclear protein localization 4 (AHRD V1 ***- D3B583_POLPA); contains Interpro domain(s) IPR007717 NPL4 " 2 3 11 18 opLeV0100001654 sgn|U215877 TCCGTAATGAAGATGCAAAAAGATACGTCAGGCAACTCCCACAACATCCACGCCAGCAGTTAGCAACAGT Experimental SGN-U587406 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|164414445|ref|NP_001105599.1| (e_value=1e-80) MAP; (*ATH) AT3G45640.1 (e_value=2e-47) Symbol: None | mitogen-activated protein kinase, putative / MAPK, putative (MPK3), identical to mitogen-activated protein kinase homolog (AtMPK3)(Arabidopsis thaliana) SWISS-PROT:Q39023; PMID:12119167 | chr3:16767755-16769683 FORWARD | Aliases: T6D9... ; (*SWP) sp|Q39023|MPK3_ARATH (e_value=2e-46) Mitogen-activated protein kinase 3 OS=Arabidopsis thaliana GN=MPK3; Solyc06g005170.2.1 genomic_reference:SL2.40ch06 gene_region:192235-195321 transcript_region:SL2.40ch06:192235..195321+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 3 (AHRD V1 **** Q84MI4_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase " 2 1 11 18 opLeV0100001655 sgn|U217866 GGGGAAATTGTGGAGACTTATCGCCTCTCCGCAAACCGTTGGAAACCCGTAAAAGATGATGAAGCAAAGT Experimental SGN-U566229 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|157335683|emb|CAO61513.1| (e_value=0) unnamed; (*ATH) AT4G07960.1 (e_value=0) Symbol: None | glycosyl transferase family 2 protein, similar to cellulose synthase from Agrobacterium tumeficiens (gi:710492) and Agrobacterium radiobacter (gi:710493); contains Pfam glycosyl transferase, group 2 family protein domain PF00535 | chr... ; (*SWP) sp|Q9ZQB9|CSLCC_ARATH (e_value=0) Probable xyloglucan glycosyltransferase 12 OS=Arabidopsis thaliana GN=CSLC12; Solyc04g077470.2.1 genomic_reference:SL2.40ch04 gene_region:59977870-59981093 transcript_region:SL2.40ch04:59977870..59981093+ go_terms:GO:0016759 functional_description:"Cellulose synthase-like C1-2 glycosyltransferase family 2 protein (AHRD V1 **** D8T077_SELML); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 " 2 7 15 18 opLeV0100001656 sgn|U232799 CAGGATGGTTCCGTTTGGGCTCAATCTGCTAATTTTCCTCAGGTTTTGCT Experimental SGN-U590929 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|17224229|gb|AAL29690.1| (e_value=4e-17) profilin [Lycopersicon esculentum]; (*ATH) AT2G19760.1 (e_value=2e-17) | Symbol: None | profilin 1 (PRO1) (PFN1) (PRF1) / allergen Ara t 8, identical to profilin 1 (Allergen Ara t 8) SP:Q42449 GI:1353770 from (Arabidopsis thaliana) | chr2:8523869-8525249 REVERSE | Aliases: F6F22.21, F6F22_21; (*SWP) sp|O82572|PROF1_RICCO (e_value=9e-17) Profilin-1 OS=Ricinus communis GN=PRO1; \N \N 2 5 15 18 opLeV0100001657 sgn|U213895 CCGAAGAATGTAAGTTACTTTATCGATGGAGTAGGCGATGCAGGGACCGTGTTGGTGCTTCCGGACGGGC Experimental SGN-U577264 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|157352431|emb|CAO43511.1| (e_value=7e-133) unnamed; (*ATH) AT3G23840.1 (e_value=9e-83) Symbol: None | transferase family protein, low similarity to hypersensitivity-related gene (Nicotiana tabacum) GI:1171577, acetyl-CoA:benzylalcohol acetyltranferase (Clarkia concinna) GI:6166330; contains Pfam profile PF02458: Transferase family | c... ; (*SWP) sp|P11432|ELI_PEA (e_value=2e-16) Early light-induced protein, chloroplastic OS=Pisum sativum; Solyc09g092270.2.1 genomic_reference:SL2.40ch09 gene_region:66753282-66757155 transcript_region:SL2.40ch09:66753282..66757155- go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (AHRD V1 *--* D1GJ93_COFAR); contains Interpro domain(s) IPR003480 Transferase " 2 3 15 18 opLeV0100001658 sgn|U221489 ACTGAATTGGCTAATGTAGTTCAAGATAGAGGGAGGAGTTCACTTGAGAAGATGCAATGGATGAAAACTA Experimental SGN-U576351 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157346305|emb|CAO16002.1| (e_value=9e-30) unnamed; (*ATH) AT3G10040.1 (e_value=1e-19) | Symbol: None | expressed protein, est match | chr3:3096420-3098076 REVERSE | Aliases: T22K18.13; Solyc09g008830.2.1 genomic_reference:SL2.40ch09 gene_region:2249828-2257471 transcript_region:SL2.40ch09:2249828..2257471+ functional_description:"Os01g0318400 protein (Fragment) (AHRD V1 *-*- Q7XXQ7_ORYSJ)" 2 1 15 18 opLeV0100001659 sgn|U215246 TTTTCAGAGTCCTTGTAGGAGTCAGCTAGTTCTCACCTGTAGTGTTCAGCTCTATTGGGCCTTTTGGCAG Experimental SGN-U564747 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|62824286|gb|AAY15746.1| (e_value=0) VIP2 [Nicotiana benthamiana]; (*ATH) AT1G07705.2 (e_value=0) |; (*SWP) sp|Q9NZN8|CNOT2_HUMAN (e_value=9e-36) CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2; Solyc06g075590.2.1 genomic_reference:SL2.40ch06 gene_region:43370736-43379277 transcript_region:SL2.40ch06:43370736..43379277+ go_terms:GO:0005634 functional_description:"CCR4-NOT transcription complex subunit 2 (AHRD V1 **-- B6SVB8_MAIZE); contains Interpro domain(s) IPR007282 NOT2/NOT3/NOT5 " 2 7 19 18 opLeV0100001660 sgn|U230312 TGCTATAGCAAATATGTGATATCGGGGTTGGTTATTTCCGTTGGTGGCTTGCAAGATTCATTGAGGAAAG Experimental SGN-U568088 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157349373|emb|CAO24519.1| (e_value=1e-79) unnamed; (*ATH) AT3G60740.1 (e_value=1e-76) | Symbol: None | tubulin folding cofactor D, identical to tubulin folding cofactor D GI:20514263 from (Arabidopsis thaliana) | chr3:22458244-22464339 REVERSE | Aliases: T4C21.150; (*SWP) sp|Q9BTW9|TBCD_HUMAN (e_value=3e-22) Tubulin-specific chaperone D OS=Homo sapiens GN=TBCD; Solyc01g091080.2.1 genomic_reference:SL2.40ch01 gene_region:76559722-76569026 transcript_region:SL2.40ch01:76559722..76569026- go_terms:GO:0051087 functional_description:"Tubulin-specific chaperone D (AHRD V1 **** C0H9S8_SALSA); contains Interpro domain(s) IPR016024 Armadillo-type fold " 2 5 19 18 opLeV0100001661 sgn|U214203 CAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATC Experimental SGN-U577863 Tomato 200607#2 [59 ESTs aligned] (*GB) gi|147832535|emb|CAN74888.1| (e_value=4e-56) hypothetical; (*ATH) AT1G16740.1 (e_value=3e-55) | Symbol: None | ribosomal protein L20 family protein, similar to ribosomal protein L20 GI:3603025 from (Guillardia theta) | chr1:5727683-5729072 FORWARD | Aliases: F19K19.15; (*SWP) sp|Q3YSX0|RL20_EHRCJ (e_value=2e-30) 50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) GN=rplT; Solyc01g006160.2.1 genomic_reference:SL2.40ch01 gene_region:805777-808340 transcript_region:SL2.40ch01:805777..808340- functional_description:"Unknown Protein (AHRD V1)" 2 3 19 18 opLeV0100001662 sgn|U219990 TGCTTGCACAGCAGCTCCGTAAGCAACAGCTTCGTCGGGGTTGATGCTCTTGCAAAGCTCCTTCCCATTA Experimental SGN-U578971 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|115440955|ref|NP_001044757.1| (e_value=8e-54) Os01g0840100; (*ATH) AT5G02500.1 (e_value=4e-55) | Symbol: None | heat shock cognate 70 kDa protein 1 (HSC70-1) (HSP70-1), identical to SP:P22953 Heat shock cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis thaliana} | chr5:553743-556437 REVERSE | Aliases: T22P11.90, T22P11_90; (*SWP) sp|P27322|HSP72_SOLLC (e_value=1e-54) Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2; Solyc09g010630.2.1 genomic_reference:SL2.40ch09 gene_region:3965253-3968837 transcript_region:SL2.40ch09:3965253..3968837+ go_terms:GO:0051082 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 " 2 1 19 18 opLeV0100001663 sgn|U223096 TGCTTCCTCCTGGAGCTCCAGCTCAGTTTAGGAAATTGTTTCCACCAACACAGTGGGCAGCAGAATTCAA Experimental SGN-U577652 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|157356713|emb|CAO62908.1| (e_value=3e-91) unnamed; (*ATH) AT1G64680.1 (e_value=3e-91) | Symbol: None | expressed protein | chr1:24039684-24041064 FORWARD | Aliases: F1N19.25, F1N19_25; Solyc08g008630.2.1 genomic_reference:SL2.40ch08 gene_region:3021327-3023012 transcript_region:SL2.40ch08:3021327..3023012+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q014B2_OSTTA)" 4 7 11 18 opLeV0100001664 sgn|U216265 ATCGTGCCAAGCTTGAGGCACGCTTAAGAGCCTTAGAAGGCAAAGAGTTGAGCAAATCAGCTGGGTCTGC Experimental SGN-U577901 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|13623892|dbj|BAB41076.1| (e_value=0) MAR-binding protein [Nicotiana tabacum]; (*ATH) AT3G05060.1 (e_value=0) Symbol: None | SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein | chr3:1412873-1415958 REVERSE | A... ; (*SWP) sp|Q9MAB3|NOP5B_ARATH (e_value=0) Probable nucleolar protein NOP5-2 OS=Arabidopsis thaliana GN=NOP5-2; Solyc09g083080.2.1 genomic_reference:SL2.40ch09 gene_region:64141872-64145889 transcript_region:SL2.40ch09:64141872..64145889- go_terms:GO:0051082 functional_description:"Nucleolar protein 5 (AHRD V1 ***- Q6P364_XENTR); contains Interpro domain(s) IPR002687 Pre-mRNA processing ribonucleoprotein, binding region " 4 5 11 18 opLeV0100001665 sgn|U224659 TGGAACTGTCAATGGGAACTCAAATTCATCATTCCATGTTGGTATCCAGTTGTCCTCTATTGCCTTGGTT Experimental SGN-U574915 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|158827652|gb|ABW81003.1| (e_value=1e-56) PI-phospholipase; (*ATH) AT3G08510.1 (e_value=1e-38) | Symbol: None | phosphoinositide-specific phospholipase C (PLC2), identical to phosphoinositide specific phospholipase C(AtPLC2) GI:857374 (Arabidopsis thaliana) | chr3:2582373-2585857 REVERSE | Aliases: T8G24.4; (*SWP) sp|Q39033|PLCD2_ARATH (e_value=7e-38) Phosphoinositide phospholipase C 2 OS=Arabidopsis thaliana GN=PLC2; Solyc10g076710.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58968235-58971638 transcript_region:SL2.40ch10:58968235..58971638- go_terms:GO:0023034,GO:0006629,GO:0005509 functional_description:"1-phosphatidylinositol-4 5-bisphosphate phosphodiesterase (AHRD V1 ***- O49902_NICRU); contains Interpro domain(s) IPR001711 Phospholipase C, phosphatidylinositol-specific, Y domain IPR018029 C2 membrane targeting protein IPR000909 Phospholipase C, phosphatidylinositol-specific , X region " 4 3 11 18 opLeV0100001666 sgn|U216158 CCGATTCTAAGAAGAAACCTAGAAGCACCAGGGCCACTTCAACTGCAGCGAAGAAAACAGAGGTGCCGAA Experimental SGN-U581474 Tomato 200607#2 [38 ESTs aligned] (*GB) gi|825521|emb|CAA77867.1| (e_value=2e-53) H1 histone-like protein [Lycopersicon esculentum]; (*ATH) AT2G18050.1 (e_value=8e-25) Symbol: None | histone H1-3 (HIS1-3), similar to histone H1 (Lycopersicon pennellii) SWISS-PROT:P40267; identical to cDNA histone H1-3 (His1-3) GI:1809314, histone H1-3 (Arabidopsis thaliana) GI:1809305 | chr2:7853132-7853966 FORWARD | Aliases: T27K... ; (*SWP) sp|P40267|H1_SOLPN (e_value=6e-52) Histone H1 OS=Solanum pennellii; Solyc02g084240.2.1 genomic_reference:SL2.40ch02 gene_region:41975280-41976442 transcript_region:SL2.40ch02:41975280..41976442+ go_terms:GO:0005634,GO:0000786 functional_description:"H1 histone-like protein (AHRD V1 ***- Q43511_SOLLC); contains Interpro domain(s) IPR005818 Histone H1/H5 " 4 1 11 18 opLeV0100001667 sgn|U225311 CACGGCGGCGGAGTTAGCGCATTCTATGGCTAAATTAGGACATGCACTTACACAAGAGGAGTTAACAGGG Experimental SGN-U571387 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157341617|emb|CAO62172.1| (e_value=5e-59) unnamed; (*ATH) AT3G03000.1 (e_value=7e-59) | Symbol: None | calmodulin, putative, similar to calmodulin SP:P04352 from (Chlamydomonas reinhardtii); contains Pfam profile: PF00036 EF hand (4 copies) | chr3:677247-678091 FORWARD | Aliases: F13E7.5, F13E7_5; (*SWP) sp|Q9M8U1|CML18_ARATH (e_value=6e-58) Probable calcium-binding protein CML18 OS=Arabidopsis thaliana GN=CML18; Solyc03g097100.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:52891513-52892004 transcript_region:SL2.40ch03:52891513..52892004+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6UHC3_MAIZE); contains Interpro domain(s) IPR003299 Flagellar calcium-binding protein (calflagin) " 4 7 15 18 opLeV0100001668 sgn|U217156 GAGTTTCGTGATGCTGCAATAGAAGGTGGAGAGGTAGTGTGGAAAAGTGGGTTGGTCGAGAAAGTGGGAC Experimental SGN-U573281 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|8489877|gb|AAF75794.1|AF272710_1 (e_value=3e-173) putative; (*ATH) AT5G65280.1 (e_value=7e-126) | Symbol: None | lanthionine synthetase C-like family protein, contains Pfam domain, PF05147: Lanthionine synthetase C-like protein | chr5:26103199-26105370 REVERSE | Aliases: MQN23.23, MQN23_23; (*SWP) sp|Q9JJK2|LANC2_MOUSE (e_value=3e-46) LanC-like protein 2 OS=Mus musculus GN=Lancl2; Solyc11g010170.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3257971-3262718 transcript_region:SL2.40ch11:3257971..3262718- functional_description:"LanC-like protein 2 (AHRD V1 ***- B6TCV9_MAIZE); contains Interpro domain(s) IPR020464 LanC-like protein, eukaryotic " 4 5 15 18 opLeV0100001669 sgn|U236680 TACCTTAGGCAAAGTAATGCCTACGCCTTCTGTGATATCTATTGGCGTATTCGATGATGGACTAAAAGCA Experimental SGN-U564259 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|85068590|gb|ABC69375.1| (e_value=7e-99) CYP82M1v4; (*ATH) AT3G25180.1 (e_value=4e-65) | Symbol: None | cytochrome P450 family protein, similar to cytochrome P450 monooxygenase GB:AAC49188 (Pisum sativum); contains Pfam profile: PF00067 cytochrome P450 | chr3:9167292-9169289 REVERSE | Aliases: MJL12.5; (*SWP) sp|O49858|C82A3_SOYBN (e_value=1e-56) Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3; Solyc10g039210.2.1 genomic_reference:SL2.40ch10 gene_region:20742639-20746994 transcript_region:SL2.40ch10:20742639..20746994- go_terms:GO:0019825 functional_description:"Cytochrome P450" 4 3 15 18 opLeV0100001670 sgn|U239031 CCCAAAAAAAGTCCCAGGCCTTGCCCATTTTTTCCCCGGGGGTTGACTTGCACAAGGGTTGGGAATCTTC Experimental SGN-U601222 Tomato 200607#2 [1 ESTs aligned] \N \N 4 1 15 18 opLeV0100001671 sgn|U234531 CTCACTATTAACCCCTTCTTTTCCCCACTTCTCTTTTCATACCCTTTTGGTAACCTCAACTTCTCTACTT Experimental SGN-U568785 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|19743740|gb|AAL92461.1| (e_value=6e-144) putative glucosyltransferase [Lycopersicon esculentum]; (*ATH) AT4G34131.1 (e_value=3e-50) | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr4:16343061-16344822 REVERSE | Aliases: F28A23.2; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=5e-129) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1; Solyc10g079930.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60702629-60703942 transcript_region:SL2.40ch10:60702629..60703942- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 ***- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase " 4 7 19 18 opLeV0100001672 sgn|U237438 GCTATAATTTATTATCAGGGAACATATCTGAGCTGGGAGGAATTGGGACCCTCACCGAATTGAACCTGGC Experimental SGN-U601309 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|218198449|gb|EEC80876.1| (e_value=5e-32) hypothetical; (*ATH) AT4G36180.1 (e_value=6e-31) | Symbol: None | leucine-rich repeat family protein, contains protein kinase domain, Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560 | chr4:17120088-17123844 REVERSE | Aliases: F23E13.70, F23E13_70; (*SWP) sp|Q9LYN8|EXS_ARATH (e_value=5e-28) Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS; Solyc03g005960.2.1 genomic_reference:SL2.40ch03 gene_region:646357-655844 transcript_region:SL2.40ch03:646357..655844+ go_terms:GO:0004702,GO:0005515 functional_description:"Receptor like kinase, RLK" 4 5 19 18 opLeV0100001673 sgn|U212800 GTTCCTCCTACACCCGGCTCTCTATTGGTGAATATTGGAGATTTTCTGCA Experimental SGN-U577171 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|119640|sp|P10967|ACCH3_SOLLC (e_value=3e-136) RecName:; (*ATH) AT1G06620.1 (e_value=3e-69) Symbol: None | 2-oxoglutarate-dependent dioxygenase, putative, similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP:P10967); contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family | chr1:2025600-2027270 FOR... ; (*SWP) sp|P10967|ACCH3_SOLLC (e_value=2e-137) 1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3; Solyc09g089580.2.1 genomic_reference:SL2.40ch09 gene_region:64646856-64649117 transcript_region:SL2.40ch09:64646856..64649117+ go_terms:GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH8_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase " 4 3 19 18 opLeV0100001674 sgn|U218271 GGAGCCAGTGCAGCTAAGTATGTAGCAAAAGTGATAGCCCCAAAAAACTCAACAATTTCTATCTCTCCAC Experimental SGN-U579833 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|3687301|emb|CAA06997.1| (e_value=0) subtilisin-like; (*ATH) AT5G67090.1 (e_value=7e-154) | Symbol: None | subtilase family protein, contains similarity to subtilisin-like protease ag12 GI:757522 from (Alnus glutinosa) | chr5:26791337-26793547 REVERSE | Aliases: K21H1.5, K21H1_5; (*SWP) sp|O65351|SUBL_ARATH (e_value=4e-149) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12; \N \N 4 1 19 18 opLeV0100001675 sgn|U213035 TTAAACACCAATACTCAGCTGATGAGATGTTCAGATAGCAGTAGAATAGATACACGGTGGAAGTAAATGC Experimental SGN-U579973 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|73543248|gb|AAZ77770.1| (e_value=1e-64) cytosolic; (*ATH) AT1G07890.5 (e_value=8e-55) Symbol: None | similar to L-ascorbate peroxidase 1b (APX1b) [Arabidopsis thaliana] (TAIR:At3g09640.1); similar to ascorbate peroxidase [Brassica juncea] (GB:AAN60794.1); contains InterPro domain Haem peroxidase (InterPro:IPR002016); contains InterPr... ; (*SWP) sp|Q05431|APX1_ARATH (e_value=8e-54) L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis thaliana GN=APX1; \N \N 2 7 12 18 opLeV0100001676 sgn|U235074 TGGGACCCGTAAAGCACTCTCCAAAGGCATGAAAACACTTCACGTAATCTGCATTGAGCCAAAAACGTTC Experimental SGN-U567621 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157360309|emb|CAO69520.1| (e_value=2e-92) unnamed; (*ATH) AT4G10925.2 (e_value=6e-85) | Symbol: None | F-box family protein, contains Pfam PF00646: F-box domain | chr4:6702766-6704618 REVERSE | Aliases: None; Solyc08g082560.2.1 genomic_reference:SL2.40ch08 gene_region:62472243-62478469 transcript_region:SL2.40ch08:62472243..62478469+ functional_description:"F-box family protein (AHRD V1 ***- B9GXK0_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box " 2 5 12 18 opLeV0100001677 sgn|U214784 CATTGAAAAAGTGGCATGGATGGCTAGCGAGTTCAAGTTTTACGGTGGCTATGAAGCTCGCTCCAGACAG Experimental SGN-U567110 Tomato 200607#2 [37 ESTs aligned] (*GB) gi|217075787|gb|ACJ86253.1| (e_value=2e-93) unknown; (*ATH) AT2G33470.1 (e_value=1e-87) Symbol: None | glycolipid transfer protein-related, similar to phosphoinositol 4-phosphate adaptor protein-2 (GI:14165198) (Homo sapiens); similar to Glycolipid transfer protein (GLTP) (Swiss-Prot:Q9JL62) (Mus musculus); similar to Glycolipid transf... ; (*SWP) sp|Q80W71|PKHA8_MOUSE (e_value=2e-18) Pleckstrin homology domain-containing family A member 8 OS=Mus musculus GN=Plekha8; Solyc06g083810.2.1 genomic_reference:SL2.40ch06 gene_region:45406955-45411773 transcript_region:SL2.40ch06:45406955..45411773- go_terms:GO:0051861,GO:0017089 functional_description:"Glycolipid transfer protein domain-containing protein 1 (AHRD V1 **-* C1C1L0_9MAXI); contains Interpro domain(s) IPR014830 Glycolipid transfer protein, GLTP " 2 3 12 18 opLeV0100001678 sgn|U223942 CACTCATGAGTTGGAAGAATCAACTCCTGACAGCACATTGCCTGTACTTGTAGGACATTTATTTGGGAGA Experimental SGN-U565079 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157344260|emb|CAO69193.1| (e_value=3e-61) unnamed; (*ATH) AT3G55480.1 (e_value=2e-51) | Symbol: None | adaptin family protein, similar to AP-3 complex beta3A subunit, Homo sapiens, SP:O00203; contains Pfam profile: PF01602 Adaptin N terminal region | chr3:20577226-20582227 REVERSE | Aliases: T22E16.140; (*SWP) sp|Q9JME5|AP3B2_MOUSE (e_value=1e-19) AP-3 complex subunit beta-2 OS=Mus musculus GN=Ap3b2; Solyc06g043030.2.1 genomic_reference:SL2.40ch06 gene_region:25908427-25918673 transcript_region:SL2.40ch06:25908427..25918673+ go_terms:GO:0005215,GO:0019903 functional_description:"AP-1 complex subunit beta-1 (AHRD V1 *-*- C0NNW5_AJECG); contains Interpro domain(s) IPR011989 Armadillo-like helical " 2 1 12 18 opLeV0100001679 sgn|U226610 CCTTAGAGGAGGTAATAAAGCACTTCATGCATTTAGCTACTGAGCGAGCTGAACTAGCTCGCAATCAGGC Experimental SGN-U590628 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|6685538|sp|Q40554|EIF3A_TOBAC (e_value=4e-71) Eukaryotic; (*ATH) AT4G11420.1 (e_value=2e-64) Symbol: None | eukaryotic translation initiation factor 3 subunit 10 / eIF-3 theta / eIF3a (TIF3A1), identical to eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) ... ; (*SWP) sp|Q40554|EIF3A_TOBAC (e_value=3e-72) Eukaryotic translation initiation factor 3 subunit A OS=Nicotiana tabacum GN=TIF3A1; Solyc09g010460.2.1 genomic_reference:SL2.40ch09 gene_region:3817371-3827369 transcript_region:SL2.40ch09:3817371..3827369+ go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 3 subunit A (AHRD V1 ***- Q24JU4_HUMAN); contains Interpro domain(s) IPR000717 Proteasome component region PCI " 2 7 16 18 opLeV0100001680 sgn|U225013 CCAATAGAGGTGCTGGTGGAAGTAGCTGTACTGGTTCGTCATACAAAGCAGGTGTCTCTCATAGTATGGT Experimental SGN-U581999 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|22327952|ref|NP_200665.2| (e_value=4e-49) expressed protein [Arabidopsis thaliana]; (*ATH) AT5G58575.1 (e_value=3e-51) | Symbol: None | expressed protein | chr5:23691244-23692462 FORWARD | Aliases: None; Solyc06g082160.2.1 genomic_reference:SL2.40ch06 gene_region:44360379-44364956 transcript_region:SL2.40ch06:44360379..44364956- functional_description:"SAGA-associated factor 11 homolog (AHRD V1 *-*- SGF11_ANOGA); contains Interpro domain(s) IPR013246 Sgf11, transcriptional regulation " 2 5 16 18 opLeV0100001681 sgn|U214201 TTGAGTGTCCATTACCTCCCAAGGAACTCAAATATGAATCCTGTTGAGGGGCTAAAGGCTTTATATGGAG Experimental SGN-U581626 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|407940|gb|AAA81890.1| (e_value=2e-174) epoxide hydrolase; (*ATH) AT4G02340.1 (e_value=7e-108) Symbol: None | epoxide hydrolase, putative, similar to epoxide hydrolases from Glycine max GI:2764806, Solanum tuberosum GI:407938; contains Pfam profile PF00561: hydrolase, alpha/beta fold family | chr4:1035683-1037615 FORWARD | Aliases: T14P8.15, ... ; (*SWP) sp|P34913|HYES_HUMAN (e_value=5e-38) Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2; Solyc05g054320.2.1 genomic_reference:SL2.40ch05 gene_region:63402671-63404922 transcript_region:SL2.40ch05:63402671..63404922- go_terms:GO:0004301 functional_description:"Epoxide hydrolase (AHRD V1 **** Q41413_SOLTU); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like " 2 3 16 18 opLeV0100001682 sgn|U243036 TCCGATTCCTTTCCGTCTATAACCCACAACAAGCCAAAGCCCATTACCGGAAACAACTCAAATCAGTATT Experimental SGN-U594864 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|79314133|ref|NP_001030807.1| (e_value=2e-42) unknown; (*ATH) AT3G44326.1 (e_value=1e-44) Symbol: None | similar to F-box family protein [Arabidopsis thaliana] (TAIR:At2g36090.1); similar to F-box domain, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX92725.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) | c... ; (*SWP) sp|Q9XIN8|FB119_ARATH (e_value=1e-43) F-box protein At2g27310 OS=Arabidopsis thaliana GN=At2g27310; \N \N 2 1 16 18 opLeV0100001683 sgn|U216014 TGAGCCATATTCAGTATATGGCTATAAACCTTTACCCAAAATGCCCCGACCCGACTGTAACAGCTGGAGC Experimental SGN-U581679 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|113205138|gb|AAT40509.2| (e_value=7e-119) Hyoscyamine; (*ATH) AT5G24530.1 (e_value=2e-49) Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavanone 3-hydroxylase (Persea americana)(GI:727410); contains PF03171 2OG-Fe(II) oxygenase superfamily domain | chr5:8378836-8383404 FORWARD | Aliases: K18P6.6, K18P6_6... ; (*SWP) sp|P24397|HY6H_HYONI (e_value=6e-91) Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H; Solyc06g073580.2.1 genomic_reference:SL2.40ch06 gene_region:41757606-41760433 transcript_region:SL2.40ch06:41757606..41760433+ go_terms:GO:0045431 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-- ACCO1_ORYSJ); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase " 2 7 20 18 opLeV0100001684 sgn|U218770 CAATCGCCAAATCACGGTGTCCTATGCCTACAAGAAAGATACAAAGGGAGAACGTCATGGAACCCCTGCT Experimental SGN-U573091 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|157348166|emb|CAO22876.1| (e_value=1e-129) unnamed; (*ATH) AT2G18510.1 (e_value=8e-119) Symbol: EMB2444 | pre-mRNA splicing factor, putative, similar to SP:Q15427 Splicing factor 3B subunit 4 (Spliceosome associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA splicing factor SF3b 49 kDa subunit) {Homo sapiens}; contains Pfam profile PF0007... ; (*SWP) sp|Q8QZY9|SF3B4_MOUSE (e_value=5e-93) Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4; Solyc03g118800.2.1 genomic_reference:SL2.40ch03 gene_region:61670164-61674250 transcript_region:SL2.40ch03:61670164..61674250+ go_terms:GO:0017091 functional_description:"Polyadenylate-binding protein (AHRD V1 *--* B6K6T8_SCHJY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait " 2 5 20 18 opLeV0100001685 sgn|U226824 TTGCACACAGCTTGCTACTATAGTCAAGACGCGACCGCGATGCGTGTGTCATGTTTTTAGTGGAGTTAAT Experimental SGN-U566253 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157347961|emb|CAO22548.1| (e_value=1e-23) unnamed; (*ATH) AT3G22600.1 (e_value=3e-19) | Symbol: None | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein, contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 | chr3:8006521-8007478 REVERSE | Aliases: F16J14.16; Solyc09g065410.2.1 genomic_reference:SL2.40ch09 gene_region:59121775-59123697 transcript_region:SL2.40ch09:59121775..59123697- go_terms:GO:0008289 functional_description:"Non-specific lipid-transfer protein (AHRD V1 **** B7FGM2_MEDTR); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical " 2 3 20 18 opLeV0100001686 sgn|U214367 CCGTGGAATGTTATCGATCCACTGTTAAATCCGAATGGGACTTGGGAGGACTGAAGCTGAACGCTTTGAA Experimental SGN-U576995 Tomato 200607#2 [33 ESTs aligned] (*GB) gi|18394416|ref|NP_564011.1| (e_value=1e-82) ubiquitin-conjugating enzyme, putative [Arabidopsis thaliana]; (*ATH) AT1G16890.2 (e_value=1e-84) | Symbol: None | ubiquitin-conjugating enzyme, putative, nearly identical to ubiquitin-conjugating enzyme E2 (Catharanthus roseus) GI:5381319; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme | chr1:5776339-5778448 REVERSE | Aliases: None; (*SWP) sp|Q9FZ48|UBC36_ARATH (e_value=9e-84) Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36; Solyc10g007260.2.1 genomic_reference:SL2.40ch10 gene_region:1673007-1678261 transcript_region:SL2.40ch10:1673007..1678261- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 N (AHRD V1 ***- B5XC59_SALSA); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 " 2 1 20 18 opLeV0100001687 sgn|U226252 CTTCTAAAACTCGCACCATTGTTACTATAACTCCTCACCAACGCATCCTGAGATCCACCGTTAAACAATT Experimental SGN-U566251 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|5453379|gb|AAD43561.1|AF155124_1 (e_value=2e-138) bacterial-induced; (*ATH) AT5G05340.1 (e_value=1e-117) | Symbol: None | peroxidase, putative, similar to peroxidase (Nicotiana tabacum) gi:5381253:dbj:BAA82306; similar to Peroxidase P7 (Brassica rapa (Turnip)) SWISS-PROT:P00434 | chr5:1578952-1580876 REVERSE | Aliases: K18I23.14, K18I23_14; (*SWP) sp|Q9FLC0|PER52_ARATH (e_value=1e-116) Peroxidase 52 OS=Arabidopsis thaliana GN=PER52; Solyc03g025380.2.1 genomic_reference:SL2.40ch03 gene_region:7193903-7196417 transcript_region:SL2.40ch03:7193903..7196417+ go_terms:GO:0005515 functional_description:"Peroxidase (AHRD V1 ***- Q58GF4_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial " 4 7 12 18 opLeV0100001688 sgn|U218849 CTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAAC Experimental SGN-U579566 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|13699079|dbj|BAB41200.1| (e_value=6e-62) TMV response-related gene product [Nicotiana tabacum]; (*ATH) AT1G76600.1 (e_value=2e-32) | Symbol: None | expressed protein | chr1:28751782-28752739 FORWARD | Aliases: F14G6.20, F14G6_20; Solyc04g082960.1.1 evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:64017682-64018245 transcript_region:SL2.40ch04:64017682..64018245+ functional_description:"TMV response-related protein (AHRD V1 *--- B6UGH4_MAIZE)" 4 5 12 18 opLeV0100001689 sgn|U213067 CTGAAGAGGCAAAGGAGCAAGAAGAGGAAGTGCCAGCAATTGCAGATTATGCAGACTACTCTGCGAGTGC Experimental SGN-U579857 Tomato 200607#2 [163 ESTs aligned] (*GB) gi|78191420|gb|ABB29931.1| (e_value=8e-115) P40-like protein [Solanum tuberosum]; (*ATH) AT1G72370.1 (e_value=2e-104) | Symbol: None | 40S ribosomal protein SA (RPSaA), identical to laminin receptor-like protein GB:U01955 (Arabidopsis thaliana); identical to cDNA laminin receptor homologue GI:16379 | chr1:27246607-27248589 REVERSE | Aliases: T10D10.16, T10D10_16; (*SWP) sp|O22518|RSSA_SOYBN (e_value=1e-106) 40S ribosomal protein SA OS=Glycine max; Solyc06g072120.2.1 genomic_reference:SL2.40ch06 gene_region:40837031-40840492 transcript_region:SL2.40ch06:40837031..40840492- go_terms:GO:0043236 functional_description:"40S ribosomal protein SA (AHRD V1 ***- B4G194_MAIZE); contains Interpro domain(s) IPR005707 Ribosomal protein S2, eukaryotic/archaeal " 4 3 12 18 opLeV0100001690 sgn|U221227 GAGCTGTCCAAAAAGACGTAAAGGCCATGATACTTATTGGCTTTGCAGGTCTGTTTGCCGGTGCTTGTAG Experimental SGN-U577024 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147779494|emb|CAN65435.1| (e_value=3e-61) hypothetical; (*ATH) AT3G25190.1 (e_value=2e-55) | Symbol: None | nodulin, putative, similar to nodulin 21 (N-21) (Glycine max) SWISS-PROT:P16313 | chr3:9175694-9177013 FORWARD | Aliases: MJL12.26; (*SWP) sp|P16313|NO21_SOYBN (e_value=2e-41) Nodulin 21 OS=Glycine max; Solyc01g104810.2.1 genomic_reference:SL2.40ch01 gene_region:84923962-84924859 transcript_region:SL2.40ch01:84923962..84924859+ functional_description:"Integral membrane protein (AHRD V1 ***- B6U6B5_MAIZE); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane " 4 1 12 18 opLeV0100001691 sgn|U224703 CTTCTAATATGTGGTTGAATCATAAATGTCACTCTCCAAGTTTCCCTCATTGAACTGCAAAGAGCAGACT Experimental SGN-U579291 Tomato 200607#2 [4 ESTs aligned] \N \N 4 7 16 18 opLeV0100001692 sgn|U213029 CTGGTGAACTCCAGAATGTGCATGCAATGCATCTTCCATATGATGTTAAGATGCTTCCATTTAACATGAA Experimental SGN-U564449 Tomato 200607#2 [121 ESTs aligned] (*GB) gi|164472579|gb|ABY58971.1| (e_value=9e-167) jasmonate; (*ATH) AT3G17860.1 (e_value=1e-38) | Symbol: None | expressed protein | chr3:6119773-6123017 FORWARD | Aliases: MEB5.8; (*SWP) sp|Q9LVI4|TIF6B_ARATH (e_value=9e-38) Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B; \N \N 4 5 16 18 opLeV0100001693 sgn|U220612 CTTGTCCTATGTGAGGTTAGAAGTTTATCGAGGCTATAGCACTACTATACATCTTGAGTACAGCTTAGTA Experimental SGN-U574795 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|147843500|emb|CAN82068.1| (e_value=2e-47) hypothetical; (*ATH) AT2G04240.1 (e_value=9e-39) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr2:1461627-1462931 REVERSE | Aliases: T23O15.13, T23O15_13; \N \N 4 3 16 18 opLeV0100001694 sgn|U219159 AATCATATAGTCGAGGAGCTCTTACTATTGACTGTTTAATGCGCGAACAGTAGCTCTTCTACTTTCAGCA Experimental SGN-U577689 Tomato 200607#2 [6 ESTs aligned] \N \N 4 1 16 18 opLeV0100001695 sgn|U241891 TAAGGATGATCCCCATAAGGTCCATCATCAACATGTACCTCCAGGAACACCTTGCCTCATGAACTATTCA Experimental SGN-U573023 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157347398|emb|CAO18035.1| (e_value=1e-14) unnamed; (*ATH) AT3G53680.1 (e_value=2e-16) | Symbol: None | PHD finger transcription factor, putative, predicted proteins, Arabidopsis thaliana | chr3:19903841-19908390 REVERSE | Aliases: F4P12.380; \N \N 4 7 20 18 opLeV0100001696 sgn|U215423 ACCCCTCAGCTCAACCAGCTTACGGTGAAAAACCTATGACTGGTGTTCCCGTGCCGGGCCAATTTCAAGC Experimental SGN-U567416 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|157338984|emb|CAO42335.1| (e_value=2e-61) unnamed; (*ATH) AT1G14870.1 (e_value=2e-56) | Symbol: None | expressed protein, similar to PGPS/D12 (Petunia x hybrida) GI:4105794; contains Pfam profile PF04749: Protein of unknown function, DUF614 | chr1:5128370-5129518 REVERSE | Aliases: F10B6.27, F10B6_27; (*SWP) sp|Q9LQU4|Y1487_ARATH (e_value=2e-55) Uncharacterized protein At1g14870 OS=Arabidopsis thaliana GN=At1g14870; Solyc01g005470.2.1 genomic_reference:SL2.40ch01 gene_region:322628-324932 transcript_region:SL2.40ch01:322628..324932- functional_description:"Cell number regulator 10 (AHRD V1 **-- D9HP26_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich " 4 5 20 18 opLeV0100001697 sgn|U220025 GAAAAGTCTTCTTCTCATCACTTGTTCGTTTGGTACCCACAACCAAGCTTGCAATCTTTGCCTCGACAGG Experimental SGN-U584100 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157343847|emb|CAO68353.1| (e_value=9e-155) unnamed; (*ATH) AT3G48770.1 (e_value=8e-108) | Symbol: None | expressed protein | chr3:18090246-18097802 REVERSE | Aliases: T21J18.40; Solyc03g097670.2.1 genomic_reference:SL2.40ch03 gene_region:53436068-53446094 transcript_region:SL2.40ch03:53436068..53446094- go_terms:GO:0005524 functional_description:"ATP binding protein (AHRD V1 **-- D7LS09_ARALY); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like " 4 3 20 18 opLeV0100001698 sgn|U218707 TTGTCATGCCTGGAGCCATTTCCACATAAATAGTCGATTGCATACCACGGCTCATTGGCATAAGATGTGG Experimental SGN-U584432 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|156763844|emb|CAO99124.1| (e_value=5e-72) putative; (*ATH) AT2G19940.1 (e_value=2e-57) Symbol: None | semialdehyde dehydrogenase family protein, similar to N-acetyl-glutamyl-phosphate reductase (Campylobacter jejuni) GI:6650362; contains Pfam profiles PF02774: Semialdehyde dehydrogenase dimerisation domain, PF01118: Semialdehyde dehyd... ; (*SWP) sp|Q6AV34|ARGC_ORYSJ (e_value=5e-57) Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0617900; Solyc01g108660.2.1 genomic_reference:SL2.40ch01 gene_region:87650490-87656659 transcript_region:SL2.40ch01:87650490..87656659- go_terms:GO:0008800 functional_description:"N-acetyl-gamma-glutamyl-phosphate reductase (AHRD V1 ***- A7WPL0_TOBAC); contains Interpro domain(s) IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase " 4 1 20 18 opLeV0100001699 sgn|U213508 GTTGTGTCCTTGTTTCGCTAGACGTTACTCAGTCATGTTAGAGGTTTCATAGATAGATCCGTAATGTATA Experimental SGN-U581797 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|23451057|gb|AAN32641.1|AF416732_1 (e_value=1e-110) putative; (*ATH) AT1G63380.1 (e_value=6e-75) | Symbol: None | short-chain dehydrogenase/reductase (SDR) family protein, contains similarity to 3-oxoacyl-(acyl-carrier protein) reductase SP:P51831 from (Bacillus subtilis) | chr1:23509306-23510169 FORWARD | Aliases: F2K11.24, F2K11_24; (*SWP) sp|Q9X248|FABG_THEMA (e_value=3e-24) 3-oxoacyl-[acyl-carrier-protein] reductase OS=Thermotoga maritima GN=fabG; \N \N 2 6 9 18 opLeV0100001700 sgn|U215657 TCCTGTTTTCTTCAGCATGAAAGAACACATTGTCTATGTGAAACAGCGGCCTCACCTCCGGACATTCTTG Experimental SGN-U572002 Tomato 200607#2 [28 ESTs aligned] (*GB) gi|157358995|emb|CAO66897.1| (e_value=3e-149) unnamed; (*ATH) AT5G46410.1 (e_value=3e-93) | Symbol: None | NLI interacting factor (NIF) family protein, contains Pfam profile PF03031: NLI interacting factor | chr5:18842330-18846448 FORWARD | Aliases: MPL12.21, MPL12_21; (*SWP) sp|Q54GB2|CTSL2_DICDI (e_value=3e-54) CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum GN=ctdspl2; Solyc02g071250.2.1 genomic_reference:SL2.40ch02 gene_region:35304214-35311172 transcript_region:SL2.40ch02:35304214..35311172- go_terms:GO:0016791 functional_description:"Protein phosphatase (AHRD V1 *-*- A8N6T5_COPC7); contains Interpro domain(s) IPR011948 Dullard-like phosphatase domain " 2 4 9 18 opLeV0100001701 sgn|U216505 AACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGC Experimental SGN-U584295 Tomato 200607#2 [41 ESTs aligned] (*GB) gi|147778296|emb|CAN60816.1| (e_value=4e-38) hypothetical; (*ATH) AT5G27700.1 (e_value=8e-35) | Symbol: None | 40S ribosomal protein S21 (RPS21C), ribosomal protein S21, Zea mays, PIR:T03945 | chr5:9807323-9808480 REVERSE | Aliases: T1G16.30, T1G16_30; (*SWP) sp|Q3E902|RS212_ARATH (e_value=7e-34) 40S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C; Solyc04g074910.2.1 genomic_reference:SL2.40ch04 gene_region:58412512-58414503 transcript_region:SL2.40ch04:58412512..58414503- go_terms:GO:0003735 functional_description:"40S ribosomal protein S21 (AHRD V1 ***- D7M5J1_ARALY); contains Interpro domain(s) IPR001931 Ribosomal protein S21e " 2 2 9 18 opLeV0100001702 sgn|U223493 TGCTGAAAGTACACAAGAACTACTTCTACAACGACGTGCTGATTGCAAGGATTCCTGGGCTGGTCAATGG Experimental SGN-U579067 Tomato 200607#2 [52 ESTs aligned] (*GB) gi|157348375|emb|CAO23162.1| (e_value=0) unnamed; (*ATH) AT1G79690.1 (e_value=0) Symbol: ATNUDT3 | MutT/nudix family protein, contains Pfam NUDIX domain (PF00293); very low similarity to Chain A and Chain B of Escherichia coli isopentenyl diphosphate:dimethylallyl diphosphate isomerase (gi:15826361) (gi:15826360) | chr1:29990223... ; (*SWP) sp|Q8L831|NUDT3_ARATH (e_value=0) Nudix hydrolase 3 OS=Arabidopsis thaliana GN=NUDT3; Solyc08g075390.2.1 genomic_reference:SL2.40ch08 gene_region:56687214-56708030 transcript_region:SL2.40ch08:56687214..56708030- go_terms:GO:0005515 functional_description:"Isopentenyl-diphosphate delta-isomerase family protein (AHRD V1 *--- B1KWZ7_CLOBM); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain " 2 8 13 18 opLeV0100001703 sgn|U222372 TATCCGCTGAGGTGGTGATTGCTTGTGATGGTGTATGGTCACCAACGGCTAAATGGATGGGATTTCGACA Experimental SGN-U573806 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157328623|emb|CAO22321.1| (e_value=8e-78) unnamed; (*ATH) AT2G35660.1 (e_value=4e-75) | Symbol: None | monooxygenase family protein, nearly identical to CTF2A (GI:4164576)(Plant Physiol. 119, 364 (1999), PGR99-008) | chr2:14995526-14997505 FORWARD | Aliases: T20F21.15, T20F21_15; Solyc08g078040.2.1 genomic_reference:SL2.40ch08 gene_region:59074800-59077939 transcript_region:SL2.40ch08:59074800..59077939+ go_terms:GO:0008152,GO:0016491 functional_description:"Monooxygenase FAD-binding (AHRD V1 ***- D8MSJ3_9ENTR); contains Interpro domain(s) IPR003042 Aromatic-ring hydroxylase-like " 2 4 13 18 opLeV0100001704 sgn|U219600 ATTTTGCCGTCCTATCAGCTTGTCAAGAGATTGTGCCAGTGCCATCACTACCAACTTGATCTCAGCCACT Experimental SGN-U563216 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157336224|emb|CAO70909.1| (e_value=1e-65) unnamed; (*ATH) AT3G17340.1 (e_value=2e-58) | Symbol: None | importin-related, contains Pfam profile PF03810: Importin-beta N-terminal domain | chr3:5920466-5926923 REVERSE | Aliases: MGD8.18; Solyc01g057520.2.1 genomic_reference:SL2.40ch01 gene_region:54163130-54174043 transcript_region:SL2.40ch01:54163130..54174043+ go_terms:GO:0005488 functional_description:"Genomic DNA chromosome 3 P1 clone MGD8 (AHRD V1 *--- Q9LUT8_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical " 2 2 13 18 opLeV0100001705 sgn|U240782 GACCATTTGGTAAAGCTTTGGTATTCGTTTGAGCCGACAGTATATCGAAAACAGTCTTTCGATCCTGTAA Experimental SGN-U604549 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157352436|emb|CAO43516.1| (e_value=6e-21) unnamed; \N \N 2 8 17 18 opLeV0100001706 sgn|U219612 CCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTA Experimental SGN-U566785 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|15241516|ref|NP_196991.1| (e_value=3e-58) cyclic nucleotide-regulated ion channel, putative (CNGC18) [Arabidopsis thaliana]; (*ATH) AT5G14870.1 (e_value=2e-60) | Symbol: None | cyclic nucleotide-regulated ion channel, putative (CNGC18), similar to cyclic nucleotide and calmodulin-regulated ion channel (cngc6) GI:4581207 from (Arabidopsis thaliana) | chr5:4808094-4810900 REVERSE | Aliases: T9L3.170, T9L3_170; (*SWP) sp|Q9LEQ3|CNG18_ARATH (e_value=2e-59) Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18; Solyc02g086990.2.1 genomic_reference:SL2.40ch02 gene_region:44124213-44128131 transcript_region:SL2.40ch02:44124213..44128131- go_terms:GO:0030551 functional_description:"Cyclic nucleotide gated channel (AHRD V1 **** A9CRE4_MALDO); contains Interpro domain(s) IPR018490 Cyclic nucleotide-binding-like " 2 6 17 18 opLeV0100001707 U72396 CGAGAAGACGACAGAAGGGGACTGCAATTACAAATCAAACCAAAATTGACAAATTTCACGCACAAAATCA Experimental SGN-U593766 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|1773291|gb|AAC14577.1| (e_value=5e-65) class II small heat shock protein Le-HSP17.6 [Lycopersicon esculentum]; (*ATH) AT5G12020.1 (e_value=3e-36) | Symbol: None | 17.6 kDa class II heat shock protein (HSP17.6-CII), identical to 17.6 kDa class II heat shock protein SP:P29830 from (Arabidopsis thaliana) | chr5:3882238-3882939 REVERSE | Aliases: F14F18.190, F14F18_190; (*SWP) sp|O82013|HSP21_SOLPE (e_value=2e-61) 17.3 kDa class II heat shock protein OS=Solanum peruvianum; \N \N 2 4 17 18 opLeV0100001708 sgn|U226631 GGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCT Experimental SGN-U577560 Tomato 200607#2 [3 ESTs aligned] \N \N 2 2 17 18 opLeV0100001709 sgn|U212765 TGGTTCATGTTGGATGTGTTGCAAAAATTAACCCTCTTGCTCCTCTTGACAAAGTATGTGTCCTTAGTTG Experimental SGN-U579420 Tomato 200607#2 [345 ESTs aligned] (*GB) gi|399007|sp|P28032|ADH2_SOLLC (e_value=0) RecName:; (*ATH) AT1G77120.1 (e_value=3e-172) | Symbol: ATADH | The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. | chr1:28980345-28982311 FORWARD | Aliases: F22K20.19, F22K20_19, ATADH; (*SWP) sp|P28032|ADH2_SOLLC (e_value=0) Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN=ADH2; Solyc06g059740.2.1 genomic_reference:SL2.40ch06 gene_region:33996647-33998846 transcript_region:SL2.40ch06:33996647..33998846+ go_terms:GO:0004024 functional_description:"Alcohol dehydrogenase 2 (AHRD V1 **** Q84UY3_PETHY); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing " 4 8 9 18 opLeV0100001710 sgn|U220889 CAAGGACATGACACCTGAGGCTGCTTATGATTATGTCAGATCCATCAGACCAAGGGTGTTGTTGGCCCCC Experimental SGN-U581306 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|118487498|gb|ABK95576.1| (e_value=2e-93) unknown; (*ATH) AT2G35680.1 (e_value=2e-90) | Symbol: None | dual specificity protein phosphatase family protein, contains Pfam profile: PF00782 dual specificity phosphatase, catalytic domain | chr2:15003792-15006164 REVERSE | Aliases: T20F21.13, T20F21_13; (*SWP) sp|Q86BN8|PTPM1_DROME (e_value=7e-26) Protein-tyrosine phosphatase mitochondrial 1-like protein OS=Drosophila melanogaster GN=Plip; Solyc10g039280.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:20931712-20936807 transcript_region:SL2.40ch10:20931712..20936807+ go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity protein phosphatase family protein (AHRD V1 ***- Q1EP41_MUSBA); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain " 4 6 9 18 opLeV0100001711 sgn|U226178 AGCAAGAGCTTTCAGCTACACATAAGTCTCTTGAGCTAGCTCTGACACGTCAAGCGGAACTTCTAGCATA Experimental SGN-U563854 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147807974|emb|CAN70946.1| (e_value=4e-49) hypothetical; (*ATH) AT2G18180.1 (e_value=4e-35) Symbol: None | SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative, contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminussimilar to phosphatidylinositol transfer-like protein IV (GI:144867... ; Solyc10g053900.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:49676051-49680791 transcript_region:SL2.40ch10:49676051..49680791- go_terms:GO:0005622 functional_description:"SEC14-like protein (AHRD V1 **-- Q9T027_ARATH); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal " 4 2 9 18 opLeV0100001712 sgn|U214825 TTCAGTTTGACCCAGCTCCTCGACAGATAGAGCCCGACACCACAAGGAAGACTCCAGATTACTTTTTGTG Experimental SGN-U567354 Tomato 200607#2 [28 ESTs aligned] (*GB) gi|34398263|gb|AAQ67226.1| (e_value=0) protein phosphatase 2A catalytic subunit [Lycopersicon esculentum]; (*ATH) AT1G10430.1 (e_value=2e-180) Symbol: None | serine/threonine protein phosphatase PP2A-1 catalytic subunit (PP2A1), identical to SP:Q07098 Serine/threonine protein phosphatase PP2A-1 catalytic subunit (EC 3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile PF00149: Ser/Thr p... ; (*SWP) sp|Q07098|PP2A2_ARATH (e_value=2e-179) Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Arabidopsis thaliana GN=PP2A2; Solyc01g011340.2.1 genomic_reference:SL2.40ch01 gene_region:8677842-8684080 transcript_region:SL2.40ch01:8677842..8684080+ go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** Q6VUQ5_SOLLC); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase " 4 8 13 18 opLeV0100001713 sgn|U218577 CCTCCAGAGCTTCGCATTACTGGAATCGATCTTCCCCAGCCAGGTTTCAAGCCAGCAGGGAGGGTTGAGG Experimental SGN-U575365 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|89474466|gb|ABD72960.1| (e_value=0) GRAS4; (*ATH) AT2G29060.1 (e_value=2e-148) | Symbol: None | scarecrow transcription factor family protein | chr2:12489068-12494060 FORWARD | Aliases: T9I4.14, T9I4_14; (*SWP) sp|Q69VG1|CIGR1_ORYSJ (e_value=2e-56) Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1; Solyc01g100200.2.1 genomic_reference:SL2.40ch01 gene_region:82020197-82022661 transcript_region:SL2.40ch01:82020197..82022661- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9GJL6_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor " 4 6 13 18 opLeV0100001714 sgn|U234003 TGCTGTGCACCTTTGTGAGGGAAATCAGGAGGATGAGGAGCTCAAAAAAG Experimental SGN-U581682 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|125599907|gb|EAZ39483.1| (e_value=4e-13) hypothetical; (*ATH) AT5G67320.1 (e_value=2e-11) | Symbol: None | WD-40 repeat family protein, strong similarity to unknown protein (ref:NP_005638.1) | chr5:26874380-26878337 FORWARD | Aliases: K8K14.4, K8K14_4; \N \N 4 4 13 18 opLeV0100001715 sgn|U216005 GGGAAAGAAAGAGGAGAAGGAAGAGAAAGTTGGTGAAGGATCCCACTAATATTTGACGTGCCGAATGCCT Experimental SGN-U576169 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157338165|emb|CAO39209.1| (e_value=6e-25) unnamed; (*ATH) AT2G20820.1 (e_value=9e-18) | Symbol: None | expressed protein, . | chr2:8971481-8972511 FORWARD | Aliases: F5H14.21, F5H14_21; Solyc07g063540.2.1 genomic_reference:SL2.40ch07 gene_region:63218222-63221060 transcript_region:SL2.40ch07:63218222..63221060- functional_description:"Unknown Protein (AHRD V1)" 4 2 13 18 opLeV0100001716 sgn|U218672 AGTGGGATAAAGCAAGTGTGCAGGAAATGAAAGACAAGTTCAAAGCTGTTGGCTTGGGCCCTCGTCAGTT Experimental SGN-U577581 Tomato 200607#2 [30 ESTs aligned] (*GB) gi|11387206|sp|Q9THX6|APX4_SOLLC (e_value=0) Putative; (*ATH) AT4G09010.1 (e_value=9e-124) Symbol: None | L-ascorbate peroxidase, chloroplast, putative, identical to SP:P82281:TL29_ARATH (EC 1.11.1.11) {Arabidopsis thaliana}; ascorbate peroxidase - Spinacia oleracea, (gi:1669585); contains Pfam domain PF00141: Peroxidase; contains TIGRfam... ; (*SWP) sp|Q9THX6|APX4_SOLLC (e_value=0) Putative L-ascorbate peroxidase, chloroplastic OS=Solanum lycopersicum GN=CLEB3J9; Solyc04g074640.2.1 genomic_reference:SL2.40ch04 gene_region:58163011-58168188 transcript_region:SL2.40ch04:58163011..58168188- go_terms:GO:0005031 functional_description:"L-ascorbate peroxidase (AHRD V1 ***- A8JG56_CHLRE); contains Interpro domain(s) IPR002207 Plant ascorbate peroxidase " 4 8 17 18 opLeV0100001717 sgn|U214575 CCTTGTGAATGTTGGAATTATCCTGCATCTAAGCCTTTGATGCGATCATCGAAACATTGTCTTGAATATG Experimental SGN-U581359 Tomato 200607#2 [48 ESTs aligned] (*GB) gi|192910730|gb|ACF06473.1| (e_value=1e-52) light-inducible; (*ATH) AT5G01650.1 (e_value=2e-54) | Symbol: None | macrophage migration inhibitory factor family protein / MIF family protein, contains pfam profile: PF001187 Macrophage migration inhibitory factor | chr5:242547-244096 REVERSE | Aliases: F7A7.170, F7A7_170; (*SWP) sp|P91850|MIFH_BRUMA (e_value=1e-15) Macrophage migration inhibitory factor homolog OS=Brugia malayi GN=BMBAC01P19.1; \N \N 4 6 17 18 opLeV0100001718 sgn|U214653 CTTAATTTGTTAGGTGGCGACTCCAAAACTCAAAAATCCCAGAAAAGTTGTTAGGTTGTGCACAAAACCC Experimental SGN-U569302 Tomato 200607#2 [5 ESTs aligned] \N \N 4 4 17 18 opLeV0100001719 sgn|U233329 TTAGGGCCTAATACTAGTCCATATTATTGGCCTTCCACAACATGGACAATGGGGATTGAATTCTAGCCGT Experimental SGN-U599256 Tomato 200607#2 [1 ESTs aligned] \N \N 4 2 17 18 opLeV0100001720 sgn|U213551 AGATCCACAGCGTGGTATCAAGGAAGCTTATCGGGTACTAACCATAGGTGGGGTTGCCTGCCTGATTGGT Experimental SGN-U581492 Tomato 200607#2 [118 ESTs aligned] (*GB) gi|1419090|emb|CAA64422.1| (e_value=7e-169) 37kDa chloroplast inner envelope membrane polypeptide precursor [Nicotiana tabacum]; (*ATH) AT3G63410.1 (e_value=8e-142) Symbol: None | chloroplast inner envelope membrane protein, putative (APG1), similar to SP:P23525 37 kDa inner envelope membrane protein, chloroplast precursor (E37) {Spinacia oleracea}; contains Pfam profile PF01209: methlytransferase, UbiE/COQ5 fa... ; (*SWP) sp|P23525|IN37_SPIOL (e_value=4e-145) 37 kDa inner envelope membrane protein, chloroplastic OS=Spinacia oleracea; Solyc03g005230.2.1 genomic_reference:SL2.40ch03 gene_region:132905-138964 transcript_region:SL2.40ch03:132905..138964+ go_terms:GO:0051741 functional_description:"Menaquinone biosynthesis methyltransferase ubiE (AHRD V1 *-** A1BDQ8_CHLPD); contains Interpro domain(s) IPR013216 Methyltransferase type 11 " 2 8 10 18 opLeV0100001721 sgn|U220538 ATCAGCTTGTGCAAATTACAGCGAGTGTTTCAGGGATCCAGCCTGTATCAAGCGATAACTGCTGTTGCAA Experimental SGN-U563800 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|30682386|ref|NP_196460.2| (e_value=2e-31) expressed protein [Arabidopsis thaliana]; (*ATH) AT5G08430.1 (e_value=2e-33) Symbol: None | SWIB complex BAF60b domain-containing protein / plus-3 domain-containing protein / GYF domain-containing protein, similar to CPRF interacting protein (Petroselinum crispum) GI:9588690; contains Pfam profiles PF02201: BAF60b domain of ... ; (*SWP) sp|Q9FT92|Y5843_ARATH (e_value=1e-32) Uncharacterized protein At5g08430 OS=Arabidopsis thaliana GN=At5g08430; Solyc01g103340.2.1 genomic_reference:SL2.40ch01 gene_region:83728516-83733759 transcript_region:SL2.40ch01:83728516..83733759+ go_terms:GO:0005634 functional_description:"Zinc finger CCCH domain-containing protein 44 (AHRD V1 **-- C3H44_ARATH); contains Interpro domain(s) IPR018144 Plus-3 domain, subgroup " 2 6 10 18 opLeV0100001722 sgn|U221932 GTTATCGGTCTGATACAAGGGTAAGTTGTAGTTTAGGTCGATTAGGCTGAGGCTCAACGACTTCCATGTG Experimental SGN-U580442 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157344976|emb|CAO71704.1| (e_value=7e-62) unnamed; (*ATH) AT2G17510.1 (e_value=7e-63) | Symbol: None | ribonuclease II family protein, similar to SP:P37202 Mitotic control protein dis3 {Schizosaccharomyces pombe}; contains Pfam profile PF00773: RNB-like protein | chr2:7616352-7623049 REVERSE | Aliases: MJB20.7, MJB20_7; (*SWP) sp|Q17632|RRP44_CAEEL (e_value=3e-18) Probable exosome complex exonuclease RRP44 OS=Caenorhabditis elegans GN=dis-3; Solyc02g082460.2.1 genomic_reference:SL2.40ch02 gene_region:40730303-40748885 transcript_region:SL2.40ch02:40730303..40748885- go_terms:GO:0000175 functional_description:"Exoribonuclease 2 (AHRD V1 *--* RNB_VIBSL); contains Interpro domain(s) IPR001900 Ribonuclease II and R " 2 4 10 18 opLeV0100001723 sgn|U225434 AGGAATGTACTAATGAAGGGTTGGGATACACTCGTTGTGAGATGAAATGTGACACTGAATGCAGTGCTAA Experimental SGN-U577169 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|76363957|gb|ABA41598.1| (e_value=2e-17) putative; Solyc06g008640.2.1 genomic_reference:SL2.40ch06 gene_region:2525896-2527232 transcript_region:SL2.40ch06:2525896..2527232- functional_description:"Pollen allergen Ole e 6 (AHRD V1 --*- ALL6_OLEEU); contains Interpro domain(s) IPR015333 Pollen allergen ole e 6 " 2 2 10 18 opLeV0100001724 sgn|U240260 TCTTTTCACCTGTCAATCCCAGTATGGTGGTTTTGGTAAGACTCCGGAGCAGCTGCCAGATCTTTACCAT Experimental SGN-U575999 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|37787343|gb|AAP50511.1| (e_value=3e-64) geranylgeranyltransferase type I beta subunit [Catharanthus roseus]; (*ATH) AT2G39550.1 (e_value=7e-58) | Symbol: None | encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways | chr2:16508701-16511382 FORWARD | Aliases: None; (*SWP) sp|Q8BUY9|PGTB1_MOUSE (e_value=2e-27) Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus GN=Pggt1b; Solyc05g054520.2.1 genomic_reference:SL2.40ch05 gene_region:63571270-63577255 transcript_region:SL2.40ch05:63571270..63577255+ go_terms:GO:0004662 functional_description:"Geranylgeranyl transferase type i beta subunit (AHRD V1 ***- Q17K57_AEDAE); contains Interpro domain(s) IPR008930 Terpenoid cylases/protein prenyltransferase alpha-alpha toroid " 2 8 14 18 opLeV0100001725 sgn|U234749 TCTCCCTAGCGGAGGGGGAAGCAAAATTAACCATGTGTGCTAAGGCAGGAATAATGTAAACTGTGAACCT Experimental SGN-U588964 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|75262335|sp|Q9FEL6|LAX3_MEDTR (e_value=9e-22) Auxin; (*ATH) AT1G77690.1 (e_value=7e-21) Symbol: None | amino acid permease, putative, similar to AUX1 (regulator of root gravitropism, putative permease) GI:1531758 GB:CAA67308 from (Arabidopsis thaliana); contains Pfam profile PF01490: Transmembrane amino acid transporter protein | chr1:... ; (*SWP) sp|Q9FEL6|LAX3_MEDTR (e_value=7e-23) Auxin transporter-like protein 3 OS=Medicago truncatula GN=LAX3; \N \N 2 6 14 18 opLeV0100001726 sgn|U215804 GGGATATGCAGGTCCGTAGATAGGATTATGGAGGTTCATCGACGTTGTGGGGAAGGCGAGAATGCTTTGT Experimental SGN-U572561 Tomato 200607#2 [29 ESTs aligned] (*GB) gi|157348920|emb|CAO23998.1| (e_value=0) unnamed; (*ATH) AT1G05170.1 (e_value=0) | Symbol: None | galactosyltransferase family protein | chr1:1491110-1494218 REVERSE | Aliases: YUP8H12.22, YUP8H12_22; (*SWP) sp|Q9N491|SQV2_CAEEL (e_value=6e-18) Beta-1,3-galactosyltransferase sqv-2 OS=Caenorhabditis elegans GN=sqv-2; Solyc07g064670.2.1 genomic_reference:SL2.40ch07 gene_region:63938407-63943118 transcript_region:SL2.40ch07:63938407..63943118+ go_terms:GO:0008499 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 **** B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 " 2 4 14 18 opLeV0100001727 sgn|U217458 AATCACTGGATCTCAGGCTCTCACATCCACAGGTGGCTGGTATAGGAACA Experimental SGN-U574038 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157355842|emb|CAO49689.1| (e_value=6e-32) unnamed; (*ATH) AT5G64170.1 (e_value=9e-27) | Symbol: None | dentin sialophosphoprotein-related, contains weak similarity to Swiss-Prot:Q9NZW4 dentin sialophosphoprotein precursor (Homo sapiens) | chr5:25689692-25693972 REVERSE | Aliases: MHJ24.1, MHJ24_1; \N \N 2 2 14 18 opLeV0100001728 sgn|U223811 TCTGGTCTTGTACATAGTTTATGTGGAAGCTCTGGTATATATGTGAGCCTGAGCAATAGCGAGAGTCTAC Experimental SGN-U585309 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|118488527|gb|ABK96076.1| (e_value=2e-58) unknown; (*ATH) AT1G08570.1 (e_value=1e-60) | Symbol: None | thioredoxin family protein, contains Pfam profile: PF00085 Thioredoxin; similar to ESTs gb:T46281, gb:R83933, gb:N65879, emb:F14466, gb:N96726, gb:AA042340, and emb:Z18150 | chr1:2712930-2714737 FORWARD | Aliases: F22O13.5, F22O13_5; (*SWP) sp|O64654|TRXL1_ARATH (e_value=1e-59) Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g08570; \N \N 2 8 18 18 opLeV0100001729 sgn|U215091 GAATCTGGAGATCCAGATTGGACCCAGAAACACATACAGCTTTTTGATGGGGTTGTATCAGCCTCAGGGG Experimental SGN-U585250 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|2281453|gb|AAB69766.1| (e_value=1e-64) putative pectate lyase Nt59 [Nicotiana tabacum]; (*ATH) AT3G01270.1 (e_value=4e-44) | Symbol: None | pectate lyase family protein, similar to pectate lyase P59 SP:P15722 from (Lycopersicon esculentum) | chr3:82695-84904 REVERSE | Aliases: T22N4.10, T22N4_10, T4P13.4, T4P13_4; (*SWP) sp|P15722|PEL59_SOLLC (e_value=1e-64) Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59; Solyc02g087670.2.1 genomic_reference:SL2.40ch02 gene_region:44601349-44603342 transcript_region:SL2.40ch02:44601349..44603342+ go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7M6R5_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen " 2 6 18 18 opLeV0100001730 sgn|U219208 CAGCTCTCGATGATGTGGAGATCATTGCCCTGCTGAAAGTTGCCATAGGATAGCACCACAACAAAGATCA Experimental SGN-U572685 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157343874|emb|CAO68380.1| (e_value=4e-35) unnamed; (*ATH) AT5G13300.1 (e_value=3e-26) Symbol: None | similar to ARF GTPase-activating domain-containing protein [Arabidopsis thaliana] (TAIR:At5g61980.1); similar to ARF GTPase-activating domain-containing protein [Arabidopsis thaliana] (TAIR:At1g60860.1); similar to ARF GTPase-activati... ; (*SWP) sp|Q5W7F2|VAN3_ARATH (e_value=2e-25) Protein VASCULAR NETWORK 3 OS=Arabidopsis thaliana GN=VAN3; Solyc12g042170.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42646392-42654179 transcript_region:SL2.40ch12:42646392..42654179- go_terms:GO:0030506 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 (AHRD V1 *--- AGAP1_XENLA); contains Interpro domain(s) IPR001164 Arf GTPase activating protein " 2 4 18 18 opLeV0100001731 sgn|U231354 TGTTTCTGGGAATTCTGTACCCCATCACTTCACATGTTTGCACTGCACGATGAGGGAGCAACAACGGTCC Experimental SGN-U585949 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|88175355|gb|ABD39696.1| (e_value=1e-56) littorine; (*ATH) AT2G45570.1 (e_value=3e-43) Symbol: None | cytochrome P450 76C2, putative (CYP76C2) (YLS6), identical to SP:O64637 Cytochrome P450 76C2 (EC 1.14.-.-) {Arabidopsis thaliana}, cDNA YLS6 mRNA for cytochrome P450 (CYP76C2), partial cds GI:13122289 | chr2:18786867-18789032 REVERSE ... ; (*SWP) sp|P37121|C76A1_SOLME (e_value=1e-46) Cytochrome P450 76A1 (Fragment) OS=Solanum melongena GN=CYP76A1; Solyc06g035760.2.1 genomic_reference:SL2.40ch06 gene_region:21596705-21598492 transcript_region:SL2.40ch06:21596705..21598492+ go_terms:GO:0019825 functional_description:"Cytochrome P450" 2 2 18 18 opLeV0100001732 sgn|U221226 CACGACGTCGTTCTGGTCAGAACCGAGATTTTCCGGCACGTTTTCCAGCCGGAAACCTTGTTACTTCAAC Experimental SGN-U564732 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|7362746|emb|CAB83116.1| (e_value=4e-88) putative protein [Arabidopsis thaliana]; (*ATH) AT3G62660.1 (e_value=3e-90) Symbol: None | glycosyl transferase family 8 protein, low similarity to glycosyl transferase lgtC - Neisseria gonorrhoeae, EMBL:AF208062; contains Pfam glycosyl transferase family 8 domain PF01501 | chr3:23183782-23185737 FORWARD | Aliases: F26K9.90... ; (*SWP) sp|Q9LSG3|QUA1_ARATH (e_value=2e-17) Glycosyltransferase QUASIMODO1 OS=Arabidopsis thaliana GN=QUA1; Solyc09g075560.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62750328-62751431 transcript_region:SL2.40ch09:62750328..62751431- go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 " 4 8 10 18 opLeV0100001733 sgn|U229306 TGAAGACCTCAGCGAAATAACGCTAGCACATACAGATTCTTGAACATAGGAGACAGGTAGACATGATAGC Experimental SGN-U587332 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|5689136|dbj|BAA82827.1| (e_value=3e-35) transcription factor Ntlim1 [Nicotiana tabacum]; (*ATH) AT1G10200.1 (e_value=6e-29) Symbol: None | transcription factor LIM, putative, strong similarity to transcription factor Ntlim1 (Nicotiana tabacum) GI:5689136, LIM domain protein WLIM-1 (Helianthus annuus) GI:5070280; contains Pfam profile PF00412: LIM domain | chr1:3346392-33... ; (*SWP) sp|P29675|SF3_HELAN (e_value=3e-23) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3; Solyc04g077780.2.1 genomic_reference:SL2.40ch04 gene_region:60273625-60275883 transcript_region:SL2.40ch04:60273625..60275883- go_terms:GO:0042802 functional_description:"LIM domain protein (AHRD V1 **-- Q306K1_BRANA); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type " 4 6 10 18 opLeV0100001734 sgn|U213409 ATCAAGCTTTATGTCTCTTCCACCCCAGAAGTGAAAGAAGGCACATTAATGAAAAAAAGTGGATGGGTTG Experimental SGN-U580887 Tomato 200607#2 [114 ESTs aligned] (*GB) gi|81076243|gb|ABB55390.1| (e_value=1e-78) ubiquitin-conjugating; (*ATH) AT3G46460.1 (e_value=1e-75) | Symbol: None | ubiquitin-conjugating enzyme 13 (UBC13), E2; identical to gi:992706 | chr3:17106886-17108437 REVERSE | Aliases: F18L15.180; (*SWP) sp|Q42540|UBC7_ARATH (e_value=4e-75) Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7; Solyc04g011430.2.1 genomic_reference:SL2.40ch04 gene_region:3885139-3888726 transcript_region:SL2.40ch04:3885139..3888726- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme 13 E2 (AHRD V1 **** D8QMV8_SELML); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 " 4 4 10 18 opLeV0100001735 sgn|U217374 TATGTAAAAAGTGTCATGAGTGGCCAGTTGATTGTTCGCCTGCCAACGCCGGTGTAATACACTAAGAGAC Experimental SGN-U581368 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|77745477|gb|ABB02637.1| (e_value=1e-123) ER lumen retaining receptor family-like protein [Solanum tuberosum]; (*ATH) AT3G25160.1 (e_value=4e-102) Symbol: None | ER lumen protein retaining receptor family protein, similar to SP:P24390 ER lumen protein retaining receptor 1 (KDEL receptor 1) {Homo sapiens}; contains Pfam profile PF00810: ER lumen protein retaining receptor | chr3:9160175-9162074... ; (*SWP) sp|Q09473|ERD22_CAEEL (e_value=3e-29) Putative ER lumen protein retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4; Solyc06g083270.2.1 genomic_reference:SL2.40ch06 gene_region:45045594-45049094 transcript_region:SL2.40ch06:45045594..45049094+ go_terms:GO:0005046 functional_description:"ER lumen retaining receptor family-like protein (AHRD V1 ***- Q38JH5_SOLTU); contains Interpro domain(s) IPR000133 ER lumen protein retaining receptor " 4 8 14 18 opLeV0100001736 sgn|U221033 GACAGGATTCTCTACTGCCCAGAAATTAGACAAACTTGGGATGCGAGGAAGTGACACATGTGAGCTTGTG Experimental SGN-U563923 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|25453061|sp|Q9FS87|IVD2_SOLTU (e_value=1e-126) Isovaleryl-CoA dehydrogenase 2, mitochondrial precursor (IVD 2); (*ATH) AT3G45300.1 (e_value=4e-110) | Symbol: None | isovaleryl-CoA-dehydrogenase (IVD), identical to isovaleryl-CoA-dehydrogenase precursor (Arabidopsis thaliana) GI:5596622 | chr3:16632060-16636033 REVERSE | Aliases: F18N11.60; (*SWP) sp|Q9FS87|IVD2_SOLTU (e_value=7e-128) Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fragment) OS=Solanum tuberosum GN=IVD2; Solyc11g069180.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50892679-50899807 transcript_region:SL2.40ch11:50892679..50899807+ go_terms:GO:0055114 functional_description:"Isovaleryl-CoA dehydrogenase (AHRD V1 ***- Q0MX57_BETVU); contains Interpro domain(s) IPR009100 Acyl-CoA dehydrogenase/oxidase, middle and N-terminal " 4 6 14 18 opLeV0100001737 sgn|U218789 TTCAGTATATCCCTGAAGGAACGATTGACAATAGGTGGACGATCCGCCTCCGTGACCTCAACACAGGAAG Experimental SGN-U583574 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157338243|emb|CAO39287.1| (e_value=5e-13) unnamed; (*ATH) AT3G15350.2 (e_value=6e-14) | Symbol: None | glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein, contains Pfam profile: PF02485 Core-2/I-Branching enzyme | chr3:5166249-5169527 FORWARD | Aliases: None; Solyc10g007040.2.1 genomic_reference:SL2.40ch10 gene_region:1431324-1434091 transcript_region:SL2.40ch10:1431324..1434091- go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase (AHRD V1 *--* GCNT3_BHV4L); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 " 4 4 14 18 opLeV0100001738 sgn|U231199 CAGCCCAGACCAATTCTTGACATCCCTAAAAAAGGACATGAAGTTACCCAGGGTCCTTCTTTGGATGATG Experimental SGN-U584112 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|83630761|gb|ABC26878.1| (e_value=5e-48) NRC1; (*ATH) AT1G58807.1 (e_value=2e-19) Symbol: None | disease resistance protein (CC-NBS-LRR class), putative / PRM1 homolog, putative, similar to disease resistance protein rpp8 (Arabidopsis thaliana) gi:3901294:gb:AAC78631; identical to cDNA RF45 mRNA for PRM1 homolog, partial cds GI:6... ; (*SWP) sp|Q9LQ54|DRL12_ARATH (e_value=4e-19) Probable disease resistance protein At1g59620 OS=Arabidopsis thaliana GN=At1g59620; Solyc04g007060.2.1 genomic_reference:SL2.40ch04 gene_region:773650-778371 transcript_region:SL2.40ch04:773650..778371+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein" 4 2 14 18 opLeV0100001739 sgn|U213367 TCTTAGACTCTACCTAGATTCTTTGAAGAAGAGGTCTTCACCAAAACTGGCATTAGGTTCTCACATTGTT Experimental SGN-U568548 Tomato 200607#2 [56 ESTs aligned] (*GB) gi|57340416|gb|AAT37498.2| (e_value=0) GDP-mannose pyrophosphorylase [Lycopersicon esculentum]; (*ATH) AT2G39770.1 (e_value=0) Symbol: None | GDP-mannose pyrophosphorylase (GMP1), identical to GDP-mannose pyrophosphorylase from Arabidopsis thaliana (GI:3598958); updated per Conklin PL et al, PNAS 1999, 96(7):4198-203 | chr2:16595783-16598063 FORWARD | Aliases: T5I7.7, T5I7_... ; (*SWP) sp|Q54K39|GMPPB_DICDI (e_value=2e-134) Mannose-1-phosphate guanyltransferase beta OS=Dictyostelium discoideum GN=gmppB; Solyc06g051270.2.1 genomic_reference:SL2.40ch06 gene_region:30991736-30993659 transcript_region:SL2.40ch06:30991736..30993659+ go_terms:GO:0004475,GO:0051015 functional_description:"GDP-D-mannose pyrophosphorylase 2" 4 8 18 18 opLeV0100001740 sgn|U213876 AATTTCCAGTATCTGATTTCTGTAGCCACAGCCATAGCTTTGGCTTAGGGGTTCGATGCCATTCAATTGA Experimental SGN-U578824 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157355629|emb|CAO49446.1| (e_value=1e-74) unnamed; (*ATH) AT4G23420.1 (e_value=5e-71) Symbol: None | short-chain dehydrogenase/reductase (SDR) family protein, similar to WW-domain oxidoreductase (Mus musculus) GI:6934274, WW domain-containing oxidoreductase isoform FORII (Homo sapiens) GI:15667686; contains Pfam PF00106: oxidoreducta... ; (*SWP) sp|Q8BYK4|RDH12_MOUSE (e_value=5e-26) Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12; \N \N 4 6 18 18 opLeV0100001741 sgn|U225939 GGGCACAGAGTTCCAAGATGATAGCAAAAAAGTTTTCGGGTCTGATTCAGGTCGGAGTTCGACTCCTTCA Experimental SGN-U563180 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|147777834|emb|CAN75732.1| (e_value=9e-18) hypothetical; Solyc02g072510.2.1 genomic_reference:SL2.40ch02 gene_region:36268726-36276453 transcript_region:SL2.40ch02:36268726..36276453- functional_description:"SAP30 binding protein (AHRD V1 *--- Q7ZUQ6_DANRE); contains Interpro domain(s) IPR012479 HCNGP-like " 4 4 18 18 opLeV0100001742 sgn|U220409 TTCTGGGATTTGCAGCATTTCATGGTCATTATCAGCCCCTCTTCCTCCCTCGACTCTCAGGTTTTAGTGT Experimental SGN-U594149 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157348916|emb|CAO23994.1| (e_value=6e-25) unnamed; (*ATH) AT2G04790.2 (e_value=3e-30) | Symbol: None | expressed protein | chr2:1679525-1680478 FORWARD | Aliases: None; Solyc05g041430.2.1 genomic_reference:SL2.40ch05 gene_region:50848963-50851647 transcript_region:SL2.40ch05:50848963..50851647+ functional_description:"Unknown Protein (AHRD V1)" 4 2 18 18 opLeV0100001743 sgn|U229642 AATCAGAGCTCCGGCGACAATGGTGCCACATATTGCCGGCGAAGAATTCCGGTTAACCGAAGATTACGTT Experimental SGN-U570212 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|161701428|gb|ABX75534.1| (e_value=0) sterol; (*ATH) AT2G34500.1 (e_value=6e-178) | Symbol: None | cytochrome P450 family protein, similar to Cytochrome P450 61 (C-22 sterol desaturase) (SP:P54781) {Saccharomyces cerevisiae} | chr2:14546558-14548485 REVERSE | Aliases: F13P17.35; (*SWP) sp|Q55EK2|C524A_DICDI (e_value=6e-72) Probable cytochrome P450 524A1 OS=Dictyostelium discoideum GN=cyp524a1; Solyc02g070580.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34885987-34887492 transcript_region:SL2.40ch02:34885987..34887492+ go_terms:GO:0019825,GO:0000249 functional_description:"Cytochrome p450" 2 8 11 18 opLeV0100001744 sgn|U218323 ACCTGCTGACAAGCCTATGATTGTTGACTAGTTCTCCAAGGCGAAGAGAAACAGTTCTCTGCTGAAGAAA Experimental SGN-U579872 Tomato 200607#2 [71 ESTs aligned] (*GB) gi|762844|gb|AAB42159.1| (e_value=0) Hsc70; (*ATH) AT3G12580.1 (e_value=0) | Symbol: HSP70 | heat shock protein 70, putative / HSP70, putative, strong similarity to heat shock protein GI:425194 (Spinacia oleracea) | chr3:3991268-3993798 REVERSE | Aliases: T2E22.11, HSP70; (*SWP) sp|P27322|HSP72_SOLLC (e_value=0) Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2; Solyc04g011440.2.1 genomic_reference:SL2.40ch04 gene_region:3894918-3898067 transcript_region:SL2.40ch04:3894918..3898067+ go_terms:GO:0051082 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 " 2 6 11 18 opLeV0100001745 sgn|U231707 GTTTATGAATATGAGCACTGCCTAACTTCTTGAGGAGGCCCCCGCTACAGTACCATGAGAAGATTGACAC Experimental SGN-U570436 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157340876|emb|CAO47681.1| (e_value=4e-21) unnamed; (*ATH) AT2G15980.1 (e_value=8e-16) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr2:6958431-6959927 REVERSE | Aliases: F19G14.2, F19G14_2; \N \N 2 4 11 18 opLeV0100001746 sgn|U214169 TGCATTTTAAGAAACGACAGTTGTAGCTTTAGACCTCAATTCTTTCCTTTGTAGGTCGATCCAGTCCTGC Experimental SGN-U574723 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|30683784|ref|NP_180382.2| (e_value=8e-17) expressed protein [Arabidopsis thaliana]; (*ATH) AT2G28150.1 (e_value=6e-19) | Symbol: None | expressed protein | chr2:12006913-12009474 FORWARD | Aliases: F24D13.6, F24D13_6; \N \N 2 2 11 18 opLeV0100001747 sgn|U213804 GTAATAGTAGCCCCAAAGAAAGAGGTAAGACTTTGGGAGTGACTAGGTTTCCTTTATAGCATTTAGAACA Experimental SGN-U580116 Tomato 200607#2 [76 ESTs aligned] (*GB) gi|77745460|gb|ABB02629.1| (e_value=2e-83) unknown [Solanum tuberosum]; (*ATH) AT1G68490.1 (e_value=3e-14) | Symbol: None | expressed protein | chr1:25697112-25699139 FORWARD | Aliases: T26J14.6, T26J14_6; Solyc06g069120.2.1 genomic_reference:SL2.40ch06 gene_region:39292001-39293674 transcript_region:SL2.40ch06:39292001..39293674+ functional_description:"Unknown Protein (AHRD V1)" 2 8 15 18 opLeV0100001748 sgn|U227294 GATAGTTCAAATGGTTTTGTCGCCAATCAAGAGGCAGAAGATTCACTGATGGTGGTAGACGGTATTGGGG Experimental SGN-U574679 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|3127045|gb|AAC39455.1| (e_value=2e-128) bHLH transcription factor JAF13 [Petunia x hybrida]; (*ATH) AT5G41315.1 (e_value=1e-53) Symbol: None | basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain ;annotation temporarily based on supporting cDNA gi:17224394:gb:AF246291.1:AF246291 | chr5:16546685-16550094 FORWARD | Al... ; (*SWP) sp|Q9FN69|GL3_ARATH (e_value=1e-52) Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3; Solyc08g081140.2.1 genomic_reference:SL2.40ch08 gene_region:61386802-61391666 transcript_region:SL2.40ch08:61386802..61391666+ go_terms:GO:0003700,GO:0042802 functional_description:"Myc-like anthocyanin regulatory protein (AHRD V1 ***- Q675M5_9ASTE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH " 2 6 15 18 opLeV0100001749 sgn|U237608 AGGGGTTTTTGCATACGGGGATCTGCCCTTATTTTGCTTCAGGGCTTCACCCCCCAAATTAGGCCAGGAA Experimental SGN-U603380 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157352660|emb|CAO44475.1| (e_value=4e-19) unnamed; (*ATH) AT5G44650.1 (e_value=2e-19) | Symbol: None | expressed protein | chr5:18030376-18032630 FORWARD | Aliases: K15C23.10, K15C23_10; Solyc10g005180.2.1 genomic_reference:SL2.40ch10 gene_region:140704-145668 transcript_region:SL2.40ch10:140704..145668+ functional_description:"Genomic DNA chromosome 5 TAC clone K15C23 (AHRD V1 **-- Q9LU01_ARATH)" 2 4 15 18 opLeV0100001750 sgn|U214737 GGGAAAGGAGGCTGCGAAATTAGGGTTTACCTGAAGTAATCAGCAAATCGATGGAAGGAATCACAGACGG Experimental SGN-U578432 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|157342933|emb|CAO65645.1| (e_value=1e-42) unnamed; (*ATH) AT2G34160.1 (e_value=1e-42) | Symbol: None | expressed protein | chr2:14433282-14434462 FORWARD | Aliases: T14G11.28, T14G11_28; (*SWP) sp|O22969|Y2416_ARATH (e_value=1e-41) Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160; Solyc06g065980.2.1 genomic_reference:SL2.40ch06 gene_region:37745855-37749141 transcript_region:SL2.40ch06:37745855..37749141+ go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 ***- D7LGX9_ARALY); contains Interpro domain(s) IPR014560 Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related " 2 2 15 18 opLeV0100001751 sgn|U236367 TCCCGGGCGTATATGGCACGGACTGGACAATTGAACTCCCATGGTTACTCGGCCGGGCTTGTGAATGCAA Experimental SGN-U600322 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|42561615|ref|NP_171710.3| (e_value=2e-35) transcriptional regulator-related [Arabidopsis thaliana]; (*ATH) AT1G02080.1 (e_value=2e-37) Symbol: None | transcriptional regulator-related, contains Pfam PF04054: CCR4-Not complex component, Not1; contains TIGRFAM TIGR01612: reticulocyte binding protein; similar to General negative regulator of transcription subunit 1 (SP:P25655) {Saccha... ; \N \N 2 8 19 18 opLeV0100001752 sgn|U224725 CGGTGGAGATCGAAGCAAGCACAATGCTAGAATGCTCCCTGGATGACTCATTTGCGAAATGCCACATCTG Experimental SGN-U576331 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157355077|emb|CAO48450.1| (e_value=1e-46) unnamed; (*ATH) AT1G17850.1 (e_value=8e-43) | Symbol: None | expressed protein | chr1:6146305-6148813 REVERSE | Aliases: F2H15.8, F2H15_8; (*SWP) sp|Q6ME97|Y378_PARUW (e_value=2e-21) UPF0176 protein pc0378 OS=Protochlamydia amoebophila (strain UWE25) GN=pc0378; Solyc12g027770.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:20129796-20135584 transcript_region:SL2.40ch12:20129796..20135584- functional_description:"UPF0176 protein yceA (AHRD V1 ***- Q1RDA3_ECOUT); contains Interpro domain(s) IPR001763 Rhodanese-like " 2 6 19 18 opLeV0100001753 sgn|U228188 GGATTTTTTAGATCACAAAACAGATGTTAGCTACCTCACTAACTTGCCTGAAGCATCCCAAAGGCTACGG Experimental SGN-U566207 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157349329|emb|CAO24475.1| (e_value=9e-23) unnamed; (*ATH) AT2G45400.1 (e_value=1e-20) | Symbol: None | dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family, similar to dihydroflavonol 4-reductase (SP:P51102), vestitone reductase (Medicago sativa, GI:973249) | chr2:18710903-18713319 REVERSE | Aliases: F4L23.9; (*SWP) sp|P51104|DFRA_DIACA (e_value=4e-12) Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A; Solyc05g051010.2.1 genomic_reference:SL2.40ch05 gene_region:60362987-60364407 transcript_region:SL2.40ch05:60362987..60364407+ go_terms:GO:0004022 functional_description:"Dihydroflavonol 4-reductase family (AHRD V1 ***- D7LCI9_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain " 2 4 19 18 opLeV0100001754 sgn|U237960 CCCTCATCAGTTGGAATAATTTTGTACCCAAAAACCAAAACCTCAAATTGGGAGGAAACGGGGCCCTTTT Experimental SGN-U600351 Tomato 200607#2 [1 ESTs aligned] \N \N 2 2 19 18 opLeV0100001755 sgn|U219740 CATTGGCTTGATAAGCACTGGAACATTATTTCTATGGATTTGGCGGGTGAGAAATGGGAAGAGGTTGATC Experimental SGN-U583144 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|47824946|gb|AAT38720.1| (e_value=1e-64) putative F-Box protein [Solanum demissum]; (*ATH) AT3G23880.1 (e_value=2e-43) | Symbol: None | F-box family protein, contains F-box domain Pfam:PF00646 | chr3:8621999-8623169 REVERSE | Aliases: F14O13.6; (*SWP) sp|Q9LIR8|FBK67_ARATH (e_value=2e-42) F-box/Kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880; Solyc09g083230.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64287968-64289113 transcript_region:SL2.40ch09:64287968..64289113+ functional_description:"F-box family protein (AHRD V1 ***- D7L456_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box " 4 8 11 18 opLeV0100001756 sgn|U223731 GACCTTAATGTACCAGATAATGATGGGAGGAGCCCTCTTCACTGGGCTGCATACAAGGGATTTGGTGATA Experimental SGN-U568829 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157355925|emb|CAO49795.1| (e_value=6e-129) unnamed; (*ATH) AT5G20350.1 (e_value=7e-97) Symbol: None | similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:At2g14250.1); similar to putative ankyrin repeat-containing protein [Oryza sativa (japonica cultivar-group)] (GB:XP_464354.1); contains InterPro domain Zn-finger, D... ; (*SWP) sp|Q52T38|TIP1_ARATH (e_value=7e-96) Palmitoyltransferase TIP1 OS=Arabidopsis thaliana GN=TIP1; Solyc01g106440.2.1 genomic_reference:SL2.40ch01 gene_region:86093522-86101805 transcript_region:SL2.40ch01:86093522..86101805+ go_terms:GO:0019706 functional_description:"Ankyrin repeat-containing protein-like (AHRD V1 **-- Q67WP3_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin " 4 6 11 18 opLeV0100001757 sgn|U223235 TATAGGGATCAGTGCGCACACCTTTTGATCCCTTTGAACAAGTGTCGGCA Experimental SGN-U568717 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|147777223|emb|CAN63291.1| (e_value=2e-42) hypothetical; (*ATH) AT2G02050.1 (e_value=6e-41) Symbol: None | NADH-ubiquinone oxidoreductase B18 subunit, putative, contains Pfam PF05676: NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7); similar to NADH-ubiquinone oxidoreductase B18 subunit (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-B18) (CI-B18... ; (*SWP) sp|Q54V61|NDUB7_DICDI (e_value=4e-18) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Dictyostelium discoideum GN=ndufb7; Solyc04g008490.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:2117997-2118299 transcript_region:SL2.40ch04:2117997..2118299- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** NDUB7_DICDI); contains Interpro domain(s) IPR008698 NADH:ubiquinone oxidoreductase, B18 subunit " 4 4 11 18 opLeV0100001758 sgn|U232904 TTGGGCGGCAGTTGGCGGATATTTGTTCAACTCCGATGGGTTGAAAGTAAACTTTGATGTGTCAAGCCCA Experimental SGN-U587767 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157342005|emb|CAO63461.1| (e_value=6e-13) unnamed; (*ATH) AT1G32400.2 (e_value=4e-12) | Symbol: None | senescence-associated family protein, contains Pfam profile PF00335: Tetraspanin family | chr1:11689089-11691445 REVERSE | Aliases: None; Solyc08g077220.2.1 genomic_reference:SL2.40ch08 gene_region:58295865-58302381 transcript_region:SL2.40ch08:58295865..58302381- go_terms:GO:0005515 functional_description:"Tetraspanin family protein (AHRD V1 **-- B6TTZ1_MAIZE); contains Interpro domain(s) IPR018499 Tetraspanin " 4 2 11 18 opLeV0100001759 sgn|U233425 GGGGTGGTTGTCATTTAGATAGTTTTCCCAAAGTGGTGTATATTGTGCTTTTGTTCCACTTCTTTTTGTG Experimental SGN-U596810 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157356840|emb|CAO63042.1| (e_value=5e-23) unnamed; (*ATH) AT5G06950.2 (e_value=4e-23) | Symbol: None | bZIP transcription factor HBP-1b homolog, identical to transcription factor HBP-1b homolog SP:P43273 from (Arabidopsis thaliana) | chr5:2151047-2154546 FORWARD | Aliases: None; (*SWP) sp|O24160|TGA21_TOBAC (e_value=1e-23) TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21; \N \N 4 8 15 18 opLeV0100001760 sgn|U213705 ATACAGAGCTTAGTGAAGGAACCAAAGGGTGCAGGGCTGAAGAAAAACTC Experimental \N \N \N \N 4 6 15 18 opLeV0100001761 sgn|U216050 ATGAATAATGTTGGTAACAATAACAGTCAGAGCCCGTGTGGGAGCAGTACCGTGGAGTCATCCAGCGGAG Experimental SGN-U581852 Tomato 200607#2 [33 ESTs aligned] (*GB) gi|57012875|sp|Q9LW49|ERF4_NICSY (e_value=1e-49) Ethylene-responsive transcription factor 4 (Ethylene-responsive element-binding factor 4 homolog) (EREBP-3) (NsERF3); (*ATH) AT5G44210.1 (e_value=1e-19) Symbol: ATERF-9 | encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7,... ; (*SWP) sp|Q9LW49|ERF4_NICSY (e_value=9e-51) Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4; Solyc07g053740.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:59491419-59492096 transcript_region:SL2.40ch07:59491419..59492096+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding " 4 4 15 18 opLeV0100001762 sgn|U224284 TTGACTGGTTTGCCTGTGAAGATGGCTAGAGGTATAGTGAACAGGCTCTCATTTGGCCCTGCTGTTCAGC Experimental SGN-U569309 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157352199|emb|CAO43227.1| (e_value=5e-64) unnamed; (*ATH) AT4G30200.1 (e_value=6e-48) | Symbol: None | expressed protein, contains weak similarities to Pfam profiles: PF00041 Fibronectin type III domain, PF00628 PHD-finger; supporting cDNA gi:11177136:dbj:AB050977.1: | chr4:14786639-14790461 REVERSE | Aliases: F9N11.50, F9N11_50; (*SWP) sp|Q9FIE3|VIN3_ARATH (e_value=2e-28) Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3; Solyc07g018270.2.1 genomic_reference:SL2.40ch07 gene_region:9970191-9981371 transcript_region:SL2.40ch07:9970191..9981371+ functional_description:"Vernalization insensitive 3 (Fragment) (AHRD V1 *--- C4PFF9_BRARC); contains Interpro domain(s) IPR003961 Fibronectin, type III " 4 2 15 18 opLeV0100001763 sgn|U213896 TGGAGTCTGAAGATAATTATATGTACGCACGTACACAAGCAAGCGCACAGTCTTGTCTCTATCCTGTATA Experimental SGN-U578039 Tomato 200607#2 [54 ESTs aligned] (*GB) gi|157350911|emb|CAO41026.1| (e_value=9e-84) unnamed; (*ATH) AT3G01470.1 (e_value=6e-38) Symbol: None | homeobox-leucine zipper protein 5 (HAT5) / HD-ZIP protein 5 / HD-ZIP protein (HB-1), identical to homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5) (HD-ZIP protein ATHB-1) GB:Q02283 (Arabidopsis thaliana) | chr3:182567-184410 RE... ; (*SWP) sp|Q02283|HAT5_ARATH (e_value=6e-37) Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5; Solyc05g006980.2.1 genomic_reference:SL2.40ch05 gene_region:1561232-1563997 transcript_region:SL2.40ch05:1561232..1563997- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox " 4 8 19 18 opLeV0100001764 sgn|U213509 CTCTATGTGATGAAATCAACTCGAATTCATCGAACGGATCGACGAAGTCGAGTCAGGATTTACGTGCCGT Experimental SGN-U581798 Tomato 200607#2 [74 ESTs aligned] (*GB) gi|13549123|gb|AAK29646.1|AF349916_1 (e_value=5e-115) putative; (*ATH) AT3G55290.2 (e_value=8e-79) | Symbol: None | short-chain dehydrogenase/reductase (SDR) family protein, contains similarity to 3-oxoacyl-(acyl-carrier protein) reductase SP:P51831 from (Bacillus subtilis) | chr3:20513604-20514774 FORWARD | Aliases: None; (*SWP) sp|P0A2D2|UCPA_SALTI (e_value=4e-18) Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA; Solyc10g080900.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61395439-61397612 transcript_region:SL2.40ch10:61395439..61397612+ go_terms:GO:0008152,GO:0055114 functional_description:"3-oxoacyl-reductase (AHRD V1 **-- B6UEX0_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase " 4 6 19 18 opLeV0100001765 sgn|U225767 GAAGAATCTCGCCGCTGGTGATGATCAAGCAAATGGTAATCCTGCTTCATTAACTGGGAAGAAAATTCTT Experimental SGN-U569628 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|3024505|sp|Q40522|RB11D_TOBAC (e_value=9e-116) Ras-related protein Rab11D; (*ATH) AT5G65270.1 (e_value=2e-107) | Symbol: None | Ras-related GTP-binding family protein, similar to GTP-binding protein RAB11A GI:1370142 from (Lotus japonicus); contains Pfam profile: PF00071 Ras family | chr5:26100602-26101940 FORWARD | Aliases: MQN23.22, MQN23_22; (*SWP) sp|Q40522|RB11D_TOBAC (e_value=6e-117) Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D; Solyc11g010100.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3222459-3224358 transcript_region:SL2.40ch11:3222459..3224358+ go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related " 4 4 19 18 opLeV0100001766 sgn|U222628 TGTGCTCGGCTATCCTTAAGCTAGGGTTGACACAAATACGAGGGTGCATGCTGTTTATTCGATCACTTGT Experimental SGN-U567956 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157336546|emb|CAO71231.1| (e_value=5e-11) unnamed; \N \N 4 2 19 18 opLeV0100001767 sgn|U234112 ATACCCGTGCAACGTGCACAATCCCCCAAAAAGCACGGGTTTTAAGAAAA Experimental SGN-U586819 Tomato 200607#2 [1 ESTs aligned] \N \N 2 8 12 18 opLeV0100001768 sgn|U217348 AGGAAATGCTGATGAACCACCGACTACACCATGGTCGGGTATTTCTGCAGTTGAAGATAAAGAGGAACCG Experimental SGN-U579911 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|157360279|emb|CAO69490.1| (e_value=1e-59) unnamed; (*ATH) AT1G64510.1 (e_value=7e-60) | Symbol: None | ribosomal protein S6 family protein, similar to plastid ribosomal protein S6 precursor GB:AAF64311 GI:7582401 from (Spinacia oleracea) | chr1:23958466-23959914 REVERSE | Aliases: F1N19.8, F1N19_8; (*SWP) sp|Q8VY91|RR6_ARATH (e_value=7e-59) 30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana GN=RPS6; Solyc08g082690.2.1 genomic_reference:SL2.40ch08 gene_region:62557534-62560345 transcript_region:SL2.40ch08:62557534..62560345- go_terms:GO:0005840 functional_description:"30S ribosomal protein S6 (AHRD V1 *-*- D7DYF3_NOSA0); contains Interpro domain(s) IPR000529 Ribosomal protein S6 " 2 6 12 18 opLeV0100001769 sgn|U231708 ACGAACCATCTTTAAATCCTGGATCCGTCCTTGTTGTTTTTTCACTTGCAGGTAAGAAAGATTCAACAAG Experimental SGN-U574880 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157345852|emb|CAO15367.1| (e_value=9e-43) unnamed; (*ATH) AT3G25560.2 (e_value=4e-41) | Symbol: None | protein kinase family protein, contains Prosite:PS00108: Serine/Threonine protein kinases active-site signature and PS00107: Protein kinases ATP-binding region signature | chr3:9280750-9283924 REVERSE | Aliases: None; (*SWP) sp|Q94F62|BAK1_ARATH (e_value=2e-17) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1; \N \N 2 4 12 18 opLeV0100001770 sgn|U240424 ATCACGCGTCTTCGTTGTAAGCTAGCTTCTTGTCTTGGAGTTCTCCAGTCCTCGTCTCTACAGATTCGTT Experimental SGN-U597423 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157335068|emb|CAO60898.1| (e_value=2e-41) unnamed; (*ATH) AT1G21460.1 (e_value=1e-42) | Symbol: None | nodulin MtN3 family protein, contains similarity to MTN3 (nodule development protein) GB:Y08726 GI:1619601 from (Medicago truncatula) | chr1:7511850-7513347 REVERSE | Aliases: F24J8.9, F24J8_9; (*SWP) sp|Q8LFH5|RPG1_ARATH (e_value=1e-16) Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1; Solyc04g064640.2.1 genomic_reference:SL2.40ch04 gene_region:54928279-54931284 transcript_region:SL2.40ch04:54928279..54931284- go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_DICDI); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue " 2 2 12 18 opLeV0100001771 sgn|U214525 CAAAGACAAACCCAACGAAGTTCCGCTTGATTATGTACTTTTCCAGCCTAACCAAGGTACGACTGACCCG Experimental SGN-U585972 Tomato 200607#2 [57 ESTs aligned] (*GB) gi|147846770|emb|CAN80621.1| (e_value=4e-132) hypothetical; (*ATH) AT2G27500.1 (e_value=1e-127) | Symbol: None | glycosyl hydrolase family 17 protein, similar to glucan endo-1,3-beta-glucosidase precursor SP:P52409 from (Triticum aestivum) | chr2:11759267-11761029 REVERSE | Aliases: F10A12.18, F10A12_18; (*SWP) sp|Q9ZQG9|E1314_ARATH (e_value=1e-126) Putative glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500/F10A12.18; Solyc11g068440.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50253546-50256836 transcript_region:SL2.40ch11:50253546..50256836+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T478_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 " 2 8 16 18 opLeV0100001772 sgn|U224735 AGTGGACAAGCTTTGGGTGGTCACAAAAGGCGACACTATGAAGGGAAGATGACGTCATCATCATCGTCGA Experimental SGN-U580987 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|439493|dbj|BAA05079.1| (e_value=2e-44) zinc-finger protein [Petunia x hybrida]; (*ATH) AT1G27730.1 (e_value=3e-33) | Symbol: None | Salt tolerance zinc finger protein responsive to chitin oligomers. | chr1:9648128-9649060 REVERSE | Aliases: T22C5.18, T22C5_18; (*SWP) sp|Q42430|ZFP1_WHEAT (e_value=1e-21) Zinc finger protein 1 OS=Triticum aestivum; Solyc12g088390.1.1 evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62238837-62239439 transcript_region:SL2.40ch12:62238837..62239439+ go_terms:GO:0005622 functional_description:"Zinc-finger protein (AHRD V1 ***- Q40899_PETHY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type " 2 6 16 18 opLeV0100001773 sgn|U217965 AATGCAGATTGATTAACCATCTCAAAAAAGGGGGGGCCCGGTACCCAATC Experimental \N \N \N \N 2 4 16 18 opLeV0100001774 sgn|U222258 AACTTCCAAATTTTGACCACTCCTACTCCCCAGTTATTGCTGCACAAGATATAAGCTTTTGCTGTGGCCG Experimental SGN-U581382 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157360154|emb|CAO69343.1| (e_value=5e-12) unnamed; Solyc08g082000.2.1 genomic_reference:SL2.40ch08 gene_region:62081443-62086358 transcript_region:SL2.40ch08:62081443..62086358- functional_description:"Genomic DNA chromosome 5 TAC clone K19E1 (AHRD V1 *-*- Q9FK19_ARATH)" 2 2 16 18 opLeV0100001775 sgn|U226341 CTTGCCTAGGATCATTCGTTGGAACGTTTGGTCGGCTCTTCGTAATGATTCCAGAATAGCTGCATCCCTC Experimental SGN-U569267 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|30694586|ref|NP_175380.2| (e_value=7e-105) peroxidase, putative [Arabidopsis thaliana]; (*ATH) AT1G49570.1 (e_value=5e-107) | Symbol: None | peroxidase, putative, identical to peroxidase ATP5a (Arabidopsis thaliana) gi:1546702:emb:CAA67341; similar to peroxidase SWISS-PROT:P80679 from (Armoracia rusticana) | chr1:18350704-18352619 FORWARD | Aliases: F14J22.19, F14J22_19; (*SWP) sp|Q9FX85|PER10_ARATH (e_value=5e-106) Peroxidase 10 OS=Arabidopsis thaliana GN=PER10; Solyc01g108320.2.1 genomic_reference:SL2.40ch01 gene_region:87434515-87436047 transcript_region:SL2.40ch01:87434515..87436047+ go_terms:GO:0005515 functional_description:"Peroxidase (AHRD V1 ***- Q43004_ORYSJ); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial " 2 8 20 18 opLeV0100001776 sgn|U214150 CCTCATTTTAGCCATCTCTTTTAACTCTTTACTCTCCTCAGCTGCTGAATCCCCACCGGAAGTAGTCGAC Experimental SGN-U571781 Tomato 200607#2 [51 ESTs aligned] (*GB) gi|2654440|gb|AAC63057.1| (e_value=5e-116) Lemir [Lycopersicon esculentum]; (*ATH) AT1G17860.1 (e_value=3e-59) Symbol: None | trypsin and protease inhibitor family protein / Kunitz family protein, similar to LeMir (miraculin homolog) GI:2654440 from (Lycopersicon esculentum), tumor-related protein (Nicotiana tabacum) GI:1762933; contains Pfam profile PF00197... ; (*SWP) sp|P13087|MIRA_RICDU (e_value=5e-53) Miraculin OS=Richadella dulcifica; Solyc03g020010.1.1 evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:6869908-6870525 transcript_region:SL2.40ch03:6869908..6870525+ go_terms:GO:0004867,GO:0015066 functional_description:"Kunitz-type trypsin inhibitor alpha chain (AHRD V1 **** ID5A_PROJU); contains Interpro domain(s) IPR002160 Proteinase inhibitor I3, Kunitz legume " 2 6 20 18 opLeV0100001777 sgn|U215813 TCTGGTACAACTACCATTGCTTTTGAGGATGTGGAGAATGGCAGAATATGAGACATGTATAAACACTGTA Experimental SGN-U571861 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|9621903|gb|AAF89579.1|AF165891_1 (e_value=2e-63) phosphatidic; (*ATH) AT3G02600.2 (e_value=2e-62) |; (*SWP) sp|Q8LFD1|LPP3_ARATH (e_value=2e-61) Putative lipid phosphate phosphatase 3, chloroplastic OS=Arabidopsis thaliana GN=LPP3; Solyc05g008820.2.1 genomic_reference:SL2.40ch05 gene_region:3052180-3055426 transcript_region:SL2.40ch05:3052180..3055426+ go_terms:GO:0008195 functional_description:"Lipid phosphate phosphatase 3 (AHRD V1 **** B6SSC1_MAIZE); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase " 2 4 20 18 opLeV0100001778 sgn|U223358 CGACGGCGACGGCTACTCTCAACGTTAAGTTCCTGAACTGTGCAATCGTCTTTCAAAGATGGACTATCAT Experimental SGN-U569976 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|77548477|gb|ABA91274.1| (e_value=9e-70) hypothetical; \N \N 2 2 20 18 opLeV0100001779 sgn|U213088 GCATCATTGATCTAGGTAGCTTGAAGGTGACCGGTGATGTATGGTTTGGATCTAGCGTTACCCTAAAGGG Experimental SGN-U579867 Tomato 200607#2 [179 ESTs aligned] (*GB) gi|136739|sp|P19595|UGPA_SOLTU (e_value=0) UTP--glucose-1-phosphate; (*ATH) AT3G03250.1 (e_value=0) Symbol: UGP | Is thought to encodes a cytosolic UDP-glucose pyrophosphorylase with strong similarity to UTP--glucose-1-phosphate uridylyltransferase (SwissProt P19595, EC 2.7.7.9, UDP-glucose pyrophosphorylase