GENESEQER PARSER

--------------------------------------------------------------------------------

GeneSeqer Parser Files:

  GeneSeqer2XML.pl - main - parses output of GeneSeqer into a GameXML file
  GetSequence.pm - extracts sequence information from the analyzed FASTA file
  ParseGeneSeqer.pm - parses GeneSeqer output file into structs
  GenerateXML.pm - generates GameXML file from the structs from ParseGeneSeqer
  AlignFix.pm - fixes GeneSeqer's EST alignment to fit individual exons

--------------------------------------------------------------------------------

Usage:

"perl GeneSeqer2XML.pl FASTA_File GeneSeqer_File XML_File"

  FASTA_File - (input) - BAC sequence (FASTA format)
  GeneSeqer_File - (input) - GeneSeqer results file
  XML_File - (output) - GAME XML file

--------------------------------------------------------------------------------
