Clone hba-244p17

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Clone
Clone name
hba-244p17
LE_HBa0244P17
C05HBa0244P17
P244P17
Clone type
BAC
Contamination
none
Estimated length
125,140
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg1727 : [coherent], 8 members:
LE_HBa0041C18, LE_HBa0055G23, LE_HBa0237E15, C05HBa0244P17, LE_HBa0255M10, LE_HBa0271P05, LE_HBa0294K10, C05HBa0309L13
Marker matches - overgo what's this? 
Plausible matches Additional Info
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
FISH mapNot on FISH map
FISH imagesNone
IL Mapping 
Assigned to project
Italy
IL-mapped to chromosome
5
IL-mapped to IL segment
-
IL mapping notes
verfied by Blast
Sequencing  
This clone is being sequenced by the Chromosome 5 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 5
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Wellcome Trust Sanger Institute
Full Sequence
146,766 bp
C05HBa0244P17.1
CU914756.3 (GenBank)
[View]
[Download fasta]
[Download full submission] (0.09 MB)
End Sequences
Warnings
none
FTP
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (32)
1003, 1003, 1095, 1158, 1185, 1409, 1552, 1552, 1727, 1869, 1949, 1949, 2051, 2051, 2138, 2341, 2428, 2428, 2785, 3317, 3589, 3618, 4317, 4795, 5986, 6738, 7583, 8508, 8508, 10077, 11332, 13099
HindIII in silico (34)
1080, 1141, 1160, 1197, 1415, 1482, 1546, 1559, 1725, 1856, 1903, 1934, 2021, 2043, 2057, 2122, 2391, 2447, 2466, 2784, 3345, 3635, 3716, 4332, 4681, 5684, 6719, 7351, 8394, 8394, 8417, 9883, 11031, 12878
Fragment Lengths Match Score
0.96
Annotations  
Browse
LE_HBa0244P17 has no browsable sequence annotations
Download
 
User comments [Add comment] 
Posted by Helen Beasley (sequencer) on 2009-02-20 07:30:23   
Moved to unmapped - pending chr4 confirmation at Imperial College.
Posted by Robert Buels (curator) on 2009-06-16 14:52:32 Delete  
high homology to C05HBa0309L13 and C05SLe0037P02, as reported by M. Gonzalez, assigning to chromosome 5.
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