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Clone hba-325d7

Clone and library  
Clone
Clone name
hba-325d7
LE_HBa0325D07
C07HBa0325D07
P325D07
Clone type
BAC
Contamination
none
Estimated length
91,481
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg977 : [coherent], 13 members:
LE_HBa0026C01, C07HBa0028C05, LE_HBa0034K06, LE_HBa0086F12, LE_HBa0191N02, C07HBa0229N08, LE_HBa0247D07, LE_HBa0279M04, LE_HBa0286G23, LE_HBa0314J24, LE_HBa0319G10, C07HBa0325D07, C07HBa0328B07
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T1414Tomato-EXPEN 2000plate 7H6
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 7
FISH map 
View on FISH map chromosome 7
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
644-01 1CompositeFluorescencePhase41.3%
644-04 1CompositeFluorescencePhase41.7%
644-11 1CompositeFluorescencePhase43.9%
644-16 1CompositeFluorescencePhase38.6%
644-18 1CompositeFluorescencePhase43.6%
644-19 1CompositeFluorescencePhase42.1%
644-23a 1CompositeFluorescencePhase48.3%
644-23b 1CompositeFluorescencePhase44.7%
644-24 1CompositeFluorescencePhase46.9%
644-29 1CompositeFluorescencePhase45.1%
644-37 1CompositeFluorescencePhase41.3%
644-38 1CompositeFluorescencePhase45.0%
644-45 1CompositeFluorescencePhase49.6%
644-48 1CompositeFluorescencePhase48.8%
644-49 1CompositeFluorescencePhase42.7%
644-52 1CompositeFluorescencePhase40.0%
Mean±sd44.0%±3.2%

Given an estimated length of 5.8µm for chromosome 7P and the mean percentage above, this BAC is approximately 2.6µm±0.2µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 7 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 7
HTGS phase
2 - fragmented, ordered
Sequencing Status
complete
Sequencing Organization
Uploaded by account 'france'
Full Sequence
120,824 bp
C07HBa0325D07.2
AC212642.2 (GenBank) 		[View]
[Download fasta]
[Download full submission] (0.10 MB)
End Sequences
None
Warnings
  • sequence is not finished to HTGS3
 FTP
Chromosome 7 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (22)
2029, 2029, 2193, 2239, 2295, 2619, 2901, 2986, 3208, 3309, 3700, 3731, 3911, 3911, 4499, 5103, 5628, 5779, 6166, 6210, 6755, 10280
HindIII in silico (31)
1399, 1436, 1495, 1820, 1875, 2021, 2046, 2191, 2256, 2314, 2645, 2906, 2968, 3222, 3347, 3745, 3755, 3786, 3801, 3929, 3932, 3987, 4425, 4833, 4862, 4884, 5316, 5449, 6714, 6827, 10097
Fragment Lengths Match Score
0.82
Annotations  
Browse
LE_HBa0325D07 has no browsable sequence annotations
Download
 
User commentsNone[Add comment] 
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End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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