Clone hba-3d15

Clone and library  
Clone
Clone name
hba-3d15
LE_HBa0003D15
C01HBa0003D15
P003D15
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (SGN 2011)

This map shows the contig positions of the SGN2011 physical map constructed at the Arizona Genome Institute in early 2011. The marker positions shown are from the latest EXPEN2000 map.

This physical map contains clones from the HindIII, EcoRI, MboI and sheared BAC libraries.

not present in Tomato FPC (SGN 2009)

This map shows the contig positions of the SGN2009 physical map constructed at the Arizona Genome Institute in late 2009. The marker positions shown are from the latest EXPEN2000 map.

This physical map contains clones from the HindIII, EcoRI, MboI and sheared BAC libraries.

not present in Tomato FPC (Sanger 2006)
Tomato fingerprint contigs, 2006 build (from the Sanger Centre).
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches Additional Info
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
FISH map 
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
260-04a 1CompositeFluorescencePhase64.2%
260-04b 1CompositeFluorescencePhase64.4%
260-14 1CompositeFluorescencePhase64.7%
260-24 1CompositeFluorescencePhase62.2%
260-25 1CompositeFluorescencePhase64.8%
260-26 1CompositeFluorescencePhase66.5%
260-28 1CompositeFluorescencePhase62.9%
260-30 1CompositeFluorescencePhase61.3%
260-35 1CompositeFluorescencePhase67.8%
260-37 1CompositeFluorescencePhase59.8%
260-39 1CompositeFluorescencePhase63.3%
260-40a 1CompositeFluorescencePhase63.7%
260-40b 1CompositeFluorescencePhase62.0%
260-41a 1CompositeFluorescencePhase62.4%
260-41b 1CompositeFluorescencePhase62.4%
Mean±sd63.5%±2.0%

Given an estimated length of 6.7µm for chromosome 1P and the mean percentage above, this BAC is approximately 4.3µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL Mapping 
Assigned to project
USA
IL-mapped to chromosome
-
IL-mapped to IL segment
-
IL mapping notes
-
Sequencing  
This clone is being sequenced by the Chromosome 1 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 1
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
97,174 bp
C01HBa0003D15.1
AC193776.1 (GenBank)
[View]
[Download fasta]
[Download full submission] (411.56 MB)
End Sequences
Warnings
none
FTP
Chromosome Assembly   
Annotations  
Browse
LE_HBa0003D15 has no browsable sequence annotations
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