Clone hba-24k9

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Clone
Clone name
hba-24k9
LE_HBa0024K09
P024K09
Clone type
BAC
Contamination
none
Estimated length
98,520
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg2475 : [coherent], 5 members:
LE_HBa0024K09, LE_HBa0172F14, C07HBa0195G07, LE_HBa0221K17, LE_HBa0258H12
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
SSR108Tomato-EXPEN 2000plate 1A7
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome
FISH map 
View on FISH map chromosome 11
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
711-02 1CompositeFluorescencePhase64.4%
711-04 1CompositeFluorescencePhase65.6%
711-06 1CompositeFluorescencePhase64.1%
711-08 1CompositeFluorescencePhase59.3%
711-09 1CompositeFluorescencePhase65.7%
711-11 1CompositeFluorescencePhase62.3%
711-12 1CompositeFluorescencePhase66.8%
711-13 1CompositeFluorescencePhase64.1%
711-15 1CompositeFluorescencePhase66.3%
711-18 1CompositeFluorescencePhase64.2%
711-21 1CompositeFluorescencePhase62.6%
711-23 1CompositeFluorescencePhase62.8%
711-25 1CompositeFluorescencePhase63.1%
711-26 1CompositeFluorescencePhase62.8%
Mean±sd63.9%±1.9%

Given an estimated length of 6.5µm for chromosome 11P and the mean percentage above, this BAC is approximately 4.2µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is not assigned to any sequencing project.
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Sequencing Project
none
HTGS phase
none
Sequencing Status
none
Sequencing Organization
not recorded
Full Sequence
Sequence not available.
End Sequences
Warnings
none
FTP
Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (19)
1589, 1895, 1968, 2433, 2666, 2928, 2991, 3338, 3790, 3923, 4036, 4588, 4743, 5655, 5875, 5966, 6366, 16357, 17413
Annotations  
Browse
LE_HBa0024K09 has no browsable sequence annotations
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End Sequences

e.g. crystallin
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Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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