Clone slm-37i8

Clone and library  
Clone
Clone name
slm-37i8
SL_MboI0037I08
C09SLm0037I08
Clone type
BAC
Contamination
none
Estimated length
173,390
Library
Name
Tomato MboI BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
MboI
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (SGN 2011)

This map shows the contig positions of the SGN2011 physical map constructed at the Arizona Genome Institute in early 2011. The marker positions shown are from the latest EXPEN2000 map.

This physical map contains clones from the HindIII, EcoRI, MboI and sheared BAC libraries.

not present in Tomato FPC (SGN 2009)

This map shows the contig positions of the SGN2009 physical map constructed at the Arizona Genome Institute in late 2009. The marker positions shown are from the latest EXPEN2000 map.

This physical map contains clones from the HindIII, EcoRI, MboI and sheared BAC libraries.

not present in Tomato FPC (Sanger 2006)
Tomato fingerprint contigs, 2006 build (from the Sanger Centre).
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this?None
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches)Not on Physical Map
FISH map 
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
1053-01 1CompositeFluorescencePhase94.8%
1053-10 1CompositeFluorescencePhase96.4%
1053-13 1CompositeFluorescencePhase95.9%
1053-15 1CompositeFluorescencePhase96.7%
1053-16 1CompositeFluorescencePhase95.8%
1053-18 1CompositeFluorescencePhase93.7%
1053-22 1CompositeFluorescencePhase94.7%
1053-23a 1CompositeFluorescencePhase96.3%
1053-23b 1CompositeFluorescencePhase93.0%
1053-26 1CompositeFluorescencePhase95.6%
1053-29 1CompositeFluorescencePhase95.4%
Mean±sd95.3%±1.2%

Given an estimated length of 9.7µm for chromosome 9Q and the mean percentage above, this BAC is approximately 9.2µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 9 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 9
HTGS phase
2 - fragmented, ordered
Sequencing Status
complete
Sequencing Organization
Uploaded by account 'spain'
Full Sequence
88,383 bp
C09SLm0037I08.2
EF647613.2 (GenBank)
[View]
[Download fasta]
[Download full submission] (228.50 MB)
End Sequences
Warnings
  • sequence is not finished to HTGS3
  • sequence length 88,383 is 49.0% different from estimated length 173,390
FTP
Chromosome Assembly   
Restriction Fragments
HindIII in vitro (33)
1404, 1451, 1583, 1671, 1739, 1838, 1955, 1983, 2234, 2302, 2544, 2785, 3019, 3130, 3575, 3688, 3767, 3914, 4027, 4099, 4562, 4833, 5032, 5376, 6433, 6589, 8062, 8519, 9974, 11624, 12852, 15936, 20890
HindIII in silico (19)
1268, 1568, 1828, 2051, 2304, 2607, 3349, 3393, 3703, 3747, 3772, 4828, 4831, 5267, 5374, 5932, 6406, 8388, 9065
Fragment Lengths Match Score
0.74
Annotations  
Browse
SL_MboI0037I08 has no browsable sequence annotations
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