Clone hba-33h16

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Clone
Clone name
hba-33h16
LE_HBa0033H16
C09HBa0033H16
P033H16
Clone type
BAC
Contamination
none
Estimated length
104,795
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this?None
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches)Not on Physical Map
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 9 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 9
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
31,276 bp
C09HBa0033H16.1
EF647598.1 (GenBank)
[View]
[Download fasta]
[Download full submission] (237.75 MB)
End Sequences
Warnings
  • poor correspondence with in vitro restriction fragments
    (match score below 0.7)
  • sequence length 31,276 is 70.2% different from estimated length 104,795
FTP
Chromosome Assembly   
Restriction Fragments
HindIII in vitro (21)
1895, 2063, 2063, 2275, 2552, 3236, 3383, 3383, 3639, 3695, 5039, 5039, 5337, 5730, 5730, 6158, 7544, 7938, 8294, 8294, 11508
HindIII in silico (6)
1004, 2101, 3420, 5374, 7955, 8264
Fragment Lengths Match Score
0.60
Annotations  
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LE_HBa0033H16 has no browsable sequence annotations
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