Clone hba-7i5

Clone and library  
Clone
Clone name
hba-7i5
LE_HBa0007I05
C09HBa0007I05
P007I05
Clone type
BAC
Contamination
none
Estimated length
122,696
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (SGN 2011)

This map shows the contig positions of the SGN2011 physical map constructed at the Arizona Genome Institute in early 2011. The marker positions shown are from the latest EXPEN2000 map.

This physical map contains clones from the HindIII, EcoRI, MboI and sheared BAC libraries.

not present in Tomato FPC (SGN 2009)

This map shows the contig positions of the SGN2009 physical map constructed at the Arizona Genome Institute in late 2009. The marker positions shown are from the latest EXPEN2000 map.

This physical map contains clones from the HindIII, EcoRI, MboI and sheared BAC libraries.

not present in Tomato FPC (Sanger 2006)
Tomato fingerprint contigs, 2006 build (from the Sanger Centre).
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this?None
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches)Not on Physical Map
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 9 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 9
HTGS phase
2 - fragmented, ordered
Sequencing Status
complete
Sequencing Organization
Uploaded by account 'spain'
Full Sequence
111,343 bp
C09HBa0007I05.1
AC234211.1 (GenBank)
[View]
[Download fasta]
[Download full submission] (246.65 MB)
End Sequences
Warnings
  • sequence is not finished to HTGS3
FTP
Chromosome Assembly   
Restriction Fragments
HindIII in vitro (33)
1088, 1249, 1358, 1358, 1413, 1498, 1540, 1540, 1755, 1840, 1933, 1933, 2131, 2282, 2282, 2334, 2446, 2446, 2939, 2978, 3363, 3389, 3547, 3574, 4961, 5739, 5955, 6172, 6547, 6670, 9695, 12100, 12641
HindIII in silico (31)
1075, 1220, 1242, 1348, 1350, 1411, 1501, 1764, 1830, 1909, 1920, 2142, 2297, 2303, 2463, 2932, 2981, 3365, 3414, 3577, 3610, 4279, 4774, 5390, 5656, 5669, 6012, 6165, 6476, 7827, 10405
Fragment Lengths Match Score
0.95
Annotations  
Browse
LE_HBa0007I05 has no browsable sequence annotations
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