Clone hba-59i5

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Clone
Clone name
hba-59i5
LE_HBa0059I05
C09HBa0059I05
P059I05
Clone type
BAC
Contamination
none
Estimated length
95,676
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg1759 : [coherent], 4 members:
LE_HBa0008K01, C09HBa0059I05, LE_HBa0297O06, LE_HBa0322F21
Marker matches - overgo what's this? 
Plausible matches Additional Info
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 9 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 9
HTGS phase
2 - fragmented, ordered
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
127,064 bp
C09HBa0059I05.3
EF647599.2 (GenBank)
[View]
[Download fasta]
[Download full submission] (381.68 MB)
End Sequences
Warnings
  • sequence is not finished to HTGS3
FTP
Chromosome Assembly   
Restriction Fragments
HindIII in vitro (28)
1061, 1136, 1193, 1437, 1437, 1517, 1554, 1576, 1685, 2018, 2456, 2456, 2609, 2716, 2923, 3019, 3083, 3282, 3282, 3917, 4587, 4803, 5695, 5695, 5695, 7476, 8308, 9060
HindIII in silico (37)
1040, 1050, 1064, 1120, 1182, 1200, 1423, 1434, 1438, 1448, 1509, 1530, 1555, 1589, 1683, 1995, 2464, 2481, 2510, 2560, 2633, 2747, 2933, 3024, 3089, 3232, 3297, 3308, 3952, 4537, 4672, 5395, 5466, 7416, 8389, 8965, 10287
Fragment Lengths Match Score
0.87
Annotations  
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LE_HBa0059I05 has no browsable sequence annotations
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