Clone hba-49f8

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Clone
Clone name
hba-49f8
LE_HBa0049F08
C09HBa0049F08
P049F08
Clone type
BAC
Contamination
none
Estimated length
92,481
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this?None
Marker matches - BLAST 
MarkerEvalueIdentity %ScoreParams
cLET-7-O31e-820.993301.00evalue cutoff: 1e-10; min len = 25; min identity=0.96
Marker matches - manualNone
Physical map (from marker matches) 
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 9 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 9
HTGS phase
2 - fragmented, ordered
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
151,911 bp
C09HBa0049F08.1
EF606852.1 (GenBank)
[View]
[Download fasta]
[Download full submission] (223.24 MB)
End Sequences
Warnings
  • sequence is not finished to HTGS3
  • poor correspondence with in vitro restriction fragments
    (match score below 0.7)
  • sequence length 151,911 is 64.3% different from estimated length 92,481
FTP
Chromosome Assembly   
Restriction Fragments
HindIII in vitro (19)
2101, 2191, 2329, 2697, 2746, 3111, 3234, 3321, 3696, 4064, 4756, 5400, 5632, 5714, 6060, 6312, 6312, 10926, 11879
HindIII in silico (41)
1054, 1054, 1077, 1125, 1135, 1292, 1328, 1445, 1488, 1495, 1652, 1764, 1820, 1940, 2070, 2102, 2133, 2190, 2230, 2368, 2724, 2735, 2755, 2789, 3103, 3222, 3347, 3713, 3751, 4114, 5065, 5277, 5425, 5785, 6151, 6169, 6172, 7346, 8603, 10810, 11892
Fragment Lengths Match Score
0.66
Annotations  
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LE_HBa0049F08 has no browsable sequence annotations
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