Clone hba-40m10

Clone and library  
Clone
Clone name
hba-40m10
LE_HBa0040M10
C03HBa0040M10
P040M10
Clone type
BAC
Contamination
none
Estimated length
107,900
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (SGN 2011)

This map shows the contig positions of the SGN2011 physical map constructed at the Arizona Genome Institute in early 2011. The marker positions shown are from the latest EXPEN2000 map.

This physical map contains clones from the HindIII, EcoRI, MboI and sheared BAC libraries.

not present in Tomato FPC (SGN 2009)

This map shows the contig positions of the SGN2009 physical map constructed at the Arizona Genome Institute in late 2009. The marker positions shown are from the latest EXPEN2000 map.

This physical map contains clones from the HindIII, EcoRI, MboI and sheared BAC libraries.

not present in Tomato FPC (Sanger 2006)
Tomato fingerprint contigs, 2006 build (from the Sanger Centre).
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this?None
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches)Not on Physical Map
FISH mapNot on FISH map
FISH imagesNone
IL Mapping 
Assigned to project
China
IL-mapped to chromosome
3
IL-mapped to IL segment
-
IL mapping notes
-
Sequencing  
This clone is being sequenced by the Chromosome 3 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 3
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Uploaded by account 'jianfeng-ren'
Full Sequence
111,801 bp
C03HBa0040M10.1
AC238752.1 (GenBank)
[View]
[Download fasta]
[Download full submission] (186.38 MB)
End Sequences
Warnings
none
FTP
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (21)
1271, 1308, 1327, 2019, 2145, 2213, 3067, 3078, 3203, 3504, 3883, 3990, 5070, 5247, 5247, 5867, 6750, 7558, 9195, 15515, 16443
HindIII in silico (20)
1093, 1276, 2135, 2208, 3062, 3112, 3269, 3573, 3956, 4056, 4866, 4984, 4998, 5022, 5584, 6818, 7509, 9224, 15211, 16526
Fragment Lengths Match Score
0.96
Annotations  
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LE_HBa0040M10 has no browsable sequence annotations
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