Clone hba-135a2

Clone and library  
Clone
Clone name
hba-135a2
LE_HBa0135A02
C05HBa0135A02
P135A02
Clone type
BAC
Contamination
none
Estimated length
76,170
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (SGN 2011)

This map shows the contig positions of the SGN2011 physical map constructed at the Arizona Genome Institute in early 2011. The marker positions shown are from the latest EXPEN2000 map.

This physical map contains clones from the HindIII, EcoRI, MboI and sheared BAC libraries.

not present in Tomato FPC (SGN 2009)

This map shows the contig positions of the SGN2009 physical map constructed at the Arizona Genome Institute in late 2009. The marker positions shown are from the latest EXPEN2000 map.

This physical map contains clones from the HindIII, EcoRI, MboI and sheared BAC libraries.

not present in Tomato FPC (Sanger 2006)
Tomato fingerprint contigs, 2006 build (from the Sanger Centre).
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this?None
Marker matches - BLAST 
MarkerEvalueIdentity %ScoreParams
T07307e-750.963276.00evalue cutoff: 1e-10; min len = 25; min identity=0.96
Marker matches - manualNone
Physical map (from marker matches) 
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 5 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 5
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Indian Agricultural Research Institute
Full Sequence
93,265 bp
C05HBa0135A02.3
AC212274.2 (GenBank)
[View]
[Download fasta]
[Download full submission] (530.31 MB)
End Sequences
Warnings
none
FTP
Chromosome Assembly   
Restriction Fragments
HindIII in vitro (16)
1677, 1677, 2344, 2443, 2539, 2661, 2893, 3154, 3464, 4335, 4335, 5000, 5238, 5644, 10926, 17840
HindIII in silico (26)
1005, 1021, 1332, 1395, 1463, 1651, 1678, 1681, 1802, 1807, 1871, 2337, 2369, 2449, 2545, 2689, 2915, 3147, 3476, 4338, 4367, 4814, 4978, 5320, 10705, 17217
Fragment Lengths Match Score
0.77
Annotations  
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LE_HBa0135A02 has no browsable sequence annotations
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