Clone hba-116c14

Clone and library  
Clone
Clone name
hba-116c14
LE_HBa0116C14
C09HBa0116C14
P116C14
Clone type
BAC
Contamination
none
Estimated length
101,670
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (SGN 2011)

This map shows the contig positions of the SGN2011 physical map constructed at the Arizona Genome Institute in early 2011. The marker positions shown are from the latest EXPEN2000 map.

This physical map contains clones from the HindIII, EcoRI, MboI and sheared BAC libraries.

not present in Tomato FPC (SGN 2009)

This map shows the contig positions of the SGN2009 physical map constructed at the Arizona Genome Institute in late 2009. The marker positions shown are from the latest EXPEN2000 map.

This physical map contains clones from the HindIII, EcoRI, MboI and sheared BAC libraries.

not present in Tomato FPC (Sanger 2006)
Tomato fingerprint contigs, 2006 build (from the Sanger Centre).
Tomato FPC (AGI 2005)
ctg2890 : [coherent], 3 members:
LE_HBa0041G07, C09HBa0116C14, LE_HBa0141K03
Marker matches - overgo what's this? 
Plausible matches Additional Info
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
FISH map 
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
126-06 1CompositeFluorescencePhase86.2%
126-28 1CompositeFluorescencePhase81.9%
126-29 1CompositeFluorescencePhase82.3%
126-30 1CompositeFluorescencePhase84.3%
126-32 1CompositeFluorescencePhase85.8%
126-33 1CompositeFluorescencePhase85.2%
126-34 1CompositeFluorescencePhase83.9%
126-37 1CompositeFluorescencePhase87.6%
126-38 1CompositeFluorescencePhase87.2%
Mean±sd84.9%±2.0%

Given an estimated length of 5.4µm for chromosome 9P and the mean percentage above, this BAC is approximately 4.6µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 9 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 9
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
109,872 bp
C09HBa0116C14.2
EF647604.1 (GenBank)
[View]
[Download fasta]
[Download full submission] (479.52 MB)
End Sequences
Warnings
none
FTP
Chromosome Assembly   
Restriction Fragments
HindIII in vitro (22)
1156, 1204, 1447, 1506, 1534, 1627, 1778, 1995, 3044, 3155, 3655, 3752, 3983, 4511, 4699, 5268, 6022, 6022, 8337, 8628, 12438, 15909
HindIII in silico (27)
1001, 1040, 1070, 1136, 1161, 1195, 1380, 1429, 1445, 1511, 1533, 1631, 1780, 3047, 3163, 3660, 3803, 4019, 4449, 4594, 5008, 5723, 5764, 8201, 8465, 11847, 14838
Fragment Lengths Match Score
0.88
Annotations  
Browse
LE_HBa0116C14 has no browsable sequence annotations
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