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Clone hba-201c12

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Clone
Clone name
hba-201c12
LE_HBa0201C12
C10HBa0201C12
P201C12
Clone type
BAC
Contamination
none
Estimated length
126,143
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Marker matches - overgo what's this? 
Plausible matches Additional Info
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
FISH map 
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
467-06a 1CompositeFluorescencePhase49.4%
467-06b 1CompositeFluorescencePhase46.1%
467-07 1CompositeFluorescencePhase48.4%
467-11 1CompositeFluorescencePhase55.6%
467-14 1CompositeFluorescencePhase46.2%
467-15 1CompositeFluorescencePhase48.9%
467-17 1CompositeFluorescencePhase50.2%
467-18 1CompositeFluorescencePhase51.7%
467-27 1CompositeFluorescencePhase47.9%
467-29 1CompositeFluorescencePhase51.8%
467-37 1CompositeFluorescencePhase52.7%
467-40 1CompositeFluorescencePhase54.1%
467-45 1CompositeFluorescencePhase48.0%
467-46 1CompositeFluorescencePhase54.2%
467-49 1CompositeFluorescencePhase51.9%
467-52 1CompositeFluorescencePhase54.1%
467-53 1CompositeFluorescencePhase51.0%
Mean±sd50.7%±2.9%

Given an estimated length of 4.8µm for chromosome 10P and the mean percentage above, this BAC is approximately 2.4µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 10 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 10
HTGS phase
3 - finished
Sequencing Status
in_progress
Sequencing Organization
Uploaded by account 'manual'
Full Sequence
125,962 bp
C10HBa0201C12.7
AC233127.23 (GenBank)
[View]
[Download fasta]
[Download full submission] (0.08 MB)
End Sequences
Warnings
none
FTP
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (33)
1167, 1191, 1271, 1271, 1466, 1479, 1493, 1564, 1649, 2076, 2476, 2510, 2920, 2920, 3039, 3039, 3228, 3326, 3937, 4111, 4111, 4314, 4399, 4755, 5345, 5345, 5476, 5766, 6120, 6897, 7157, 7648, 12677
HindIII in silico (33)
1150, 1156, 1196, 1245, 1406, 1447, 1469, 1494, 1570, 1647, 2044, 2491, 2541, 2905, 2930, 3061, 3241, 3350, 3957, 4098, 4146, 4285, 4379, 4586, 4971, 5066, 5078, 5183, 5420, 5900, 7072, 7517, 12431
Fragment Lengths Match Score
0.99
Annotations  
Browse
LE_HBa0201C12 has no browsable sequence annotations
Download
temporarily unavailable
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