Clone hba-278j12

Clone and library  
Clone
Clone name
hba-278j12
LE_HBa0278J12
C09HBa0278J12
P278J12
Clone type
BAC
Contamination
none
Estimated length
89,897
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (SGN 2011)

This map shows the contig positions of the SGN2011 physical map constructed at the Arizona Genome Institute in early 2011. The marker positions shown are from the latest EXPEN2000 map.

This physical map contains clones from the HindIII, EcoRI, MboI and sheared BAC libraries.

not present in Tomato FPC (SGN 2009)

This map shows the contig positions of the SGN2009 physical map constructed at the Arizona Genome Institute in late 2009. The marker positions shown are from the latest EXPEN2000 map.

This physical map contains clones from the HindIII, EcoRI, MboI and sheared BAC libraries.

not present in Tomato FPC (Sanger 2006)
Tomato fingerprint contigs, 2006 build (from the Sanger Centre).
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches Additional Info
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
FISH map 
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
122-07 1CompositeFluorescencePhase71.4%
122-12 1CompositeFluorescencePhase71.3%
122-15 1CompositeFluorescencePhase73.1%
122-16 1CompositeFluorescencePhase70.7%
Mean±sd71.6%±1.0%

Given an estimated length of 9.7µm for chromosome 9Q and the mean percentage above, this BAC is approximately 6.9µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 9 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 9
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Uploaded by account 'spain'
Full Sequence
102,418 bp
C09HBa0278J12.3
EF647608.2 (GenBank)
[View]
[Download fasta]
[Download full submission] (276.31 MB)
End Sequences
None
Warnings
none
FTP
Chromosome Assembly   
Restriction Fragments
HindIII in vitro (23)
1388, 1434, 1693, 1834, 1877, 2000, 2028, 2401, 2512, 2664, 2685, 2815, 2838, 3343, 3506, 4132, 4477, 4796, 5444, 6325, 8316, 9896, 11493
HindIII in silico (29)
1276, 1333, 1335, 1384, 1426, 1454, 1660, 1705, 1825, 1875, 1958, 1977, 2024, 2411, 2533, 2659, 2678, 2795, 2851, 3348, 3531, 4127, 4405, 4663, 5134, 6188, 8198, 9783, 11105
Fragment Lengths Match Score
0.88
Annotations  
Browse
LE_HBa0278J12 has no browsable sequence annotations
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