Clone Read LE_HBa0173I22_T7_105259

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0173I22_T7_105259
Primer
T7
ID from Seq. Facility
LE_HBa_173_I22-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
710 trimmed for vector and quality, 782 raw
Sequence
>LE_HBa0173I22_T7_105259 (raw untrimmed)
ACTCGGACCCGAGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCTACCAAAGGGACATTGTAGACCTTTGCTTCAACATTGTTAATAAATGTTG
ATATTTACCATCCTCTGTCTTTTTCACTAACCTTTGAGGAAATGGGGGGCGGGGCATCTAGGCATGAGAGTTACCTTATAAGGCACTTCAACATATTTTC
AATGTTATCTTCTACTTCACCATTAAGCTCTACCACTTTATCAGTATCTTTTGTCACATTTTTTCATAAGACGACATAGGTGGCTCAATTGTTTGCTTAC
CACCACGAGTAGTGATTGCCGTATAATTTCCATCATTTTTTGGATTCTGGACAGTGTTGCTAGGAAGAGTGCCCAGTTGCCGTGTGTTCAGAGTCGCAAA
TAATTGGACCAATTGTAACTCAAGTTGCTTAATTGATATTGCATGTGTATAGACTTTCTGGTTAATACCCGCTAAATCATTCCTCTACTCACCCGGCTGC
TCATCACTAGCATCGAACCTCCTCATCATTTTATGCAACATATCCTCAACTCCCTCCATACTACCTCAACAATCCCTAGGAGTAACTTTAGGATTTTGAG
GAGGAACATAGGGCCCGTTCCTATCATTTCTATTACCATAGTTACCCCCAGTTGAAGTGGTTGTAGCGGTTGTAATTTCCTTCTCCACCATAATGAACCT
CACGGTTATAGTTACCATAGATCTGACCTTGGTTCCCTTGACCTTTGTCGCCAATTTATCCTGATTAAAGCCTTGGGCACTC
>LE_HBa0173I22_T7_105259 (trimmed for quality and cloning vector)
AGCTTCTACCAAAGGGACATTGTAGACCTTTGCTTCAACATTGTTAATAAATGTTGATATTTACCATCCTCTGTCTTTTTCACTAACCTTTGAGGAAATG
GGGGGCGGGGCATCTAGGCATGAGAGTTACCTTATAAGGCACTTCAACATATTTTCAATGTTATCTTCTACTTCACCATTAAGCTCTACCACTTTATCAG
TATCTTTTGTCACATTTTTTCATAAGACGACATAGGTGGCTCAATTGTTTGCTTACCACCACGAGTAGTGATTGCCGTATAATTTCCATCATTTTTTGGA
TTCTGGACAGTGTTGCTAGGAAGAGTGCCCAGTTGCCGTGTGTTCAGAGTCGCAAATAATTGGACCAATTGTAACTCAAGTTGCTTAATTGATATTGCAT
GTGTATAGACTTTCTGGTTAATACCCGCTAAATCATTCCTCTACTCACCCGGCTGCTCATCACTAGCATCGAACCTCCTCATCATTTTATGCAACATATC
CTCAACTCCCTCCATACTACCTCAACAATCCCTAGGAGTAACTTTAGGATTTTGAGGAGGAACATAGGGCCCGTTCCTATCATTTCTATTACCATAGTTA
CCCCCAGTTGAAGTGGTTGTAGCGGTTGTAATTTCCTTCTCCACCATAATGAACCTCACGGTTATAGTTACCATAGATCTGACCTTGGTTCCCTTGACCT
TTGTCGCCAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.971998
Expected error %
0.98462
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38730.1| Score 87 E Value 4e-16 Identity 14.00% Align. Length 407bp (57.32%) Frame 1
putative reverse transcriptase [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0173I22
Clone
Clone name
hba-173i22
LE_HBa0173I22
P173I22
Clone type
BAC
Contamination
none
Estimated length
117,581
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found