Clone Read LE_HBa0190J18_SP6_107602

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0190J18_SP6_107602
Primer
SP6
ID from Seq. Facility
LE_HBa_190_J18-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
6 trimmed for vector and quality, 908 raw
Sequence
>LE_HBa0190J18_SP6_107602 (raw untrimmed)
AAAAAGGAACATTACCAGCTGCGAAAAAAAGATGCATCGAAGACTGGCAAAATAAATTATTTCTTTTGAAACAAATGAAGAACCCTTTGAATAAAGAGGG
CACTCCTATTTCTAACAATAGGAACCTTTAAAAGGGCGTTCTAGACCAGCAGTACGAAATGGGGAT
AAAATTCGATGAACAAATTCAAGGACTATGACCC
CAAAAAAACCTGCCCGACTCTATTGAAACTCTGCGAGGGAGAGGAGACCAATTCAGATCCCAGTGGAGTTGGCACCACGGAAAACGGTAAAAGCGGTGCC
TAAAAAAAAGGAATGCCCAACAAAACCGCCAGGAGCCTCACGTACGACTTGCCACAACCGAAGGTTGACTTACTCGAAGAAAGGTGTGGAAAGAAACCTC
ATAGGCCCATAGAAAACGGATCTATACAGTTTTGGGAAATTGATATATCTCCACTTCCAGGAAATGGGTGGGGGGGGGGAATTGACCATAAATATTTTGT
GTGTATCCTCCCACTTTCTGGGTCGATTCACAAACGGAAAAATTCAAACCAACAGGAAGTATATGGAAGGCCCACAAGACACTACTCCGCTAGTGGTGTT
CGCTAATAAAATACTGAAACTTTTTACTGTCGCACGCTGGAAGAAATAACTCTCCATAGAACTGTGATGTCGTGGGAAAAACCTCACAACAGAGTATTTG
AGCAGTTCGAGGTCCTTAACTGTACTAACTCTGACTAACCCGAATCGAACAAACAACATATCAACACTCAAGTATAGCAGACGCTCAATAACTCTATACA
TACCGTATCAAATATCAACCTCCATCGATCCCGAATAGCCTCGCACTTCCACTACCGAATATTCTTTAATAAGTACATATTCCTTTCTACCACTACACAA
AAGAAGAT
>LE_HBa0190J18_SP6_107602 (trimmed for quality and cloning vector)
AAAATT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.00157
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0190J18
Clone
Clone name
hba-190j18
LE_HBa0190J18
P190J18
Clone type
BAC
Contamination
none
Estimated length
106,962
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found