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Clone Read LE_HBa0188H19_SP6_113644

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0188H19_SP6_113644
Primer
SP6
ID from Seq. Facility
LE_HBa_188_H19-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1744 raw
Sequence
>LE_HBa0188H19_SP6_113644 (raw untrimmed)
NCGCGAGCGAGTGCGTATTCTTCGTACGCGTACGCAAGCTATCGCGAGATGATGCTGGTCGNGNTGCTGTCTCGTGAGTAGCAGTGTCGGTTGTGNGCGA
GAGAGTAGCGTGNCGATCNCACNCGTAGACGACGCACTCGCTCTNCTCTGCTCNACTATCTNCTTNTTGCGCCTCGTCTCTTTGAGAGCGCGTGCGCTCT
CNCGCACCCTGTCCCGCTCTCCNTCGCCTATACGCTNTGCTNGCTGACGACTGGCGAAGTCCCCCCCTTCTATCCACAAGAGGAGGCGGCGCTCTCGGCC
GCGTAGCATATCACCTACGGACNGAGGTGTGTCTTGTCTGATATNTGNCNTATGCTTGTTNCTATATGCGTNGTATGGTCAGTGAACGTACNGACTGTGA
CTTGTNCGTTNNCGATGCGTGCGCTGACGAGCGCGCTNGTACCANGANGGCGACAGCGGGGAGCGGAGCGGTAGCNGGGAAGACTGACGTCGNATCTGCG
CGTGNTATGNGCAGNCTATAGCGGTGCGATGCATGGTGTNTNGNAGCTGCAGTGCTGAGACGTGACAGACGGAGATCTAGCTGANANCGCTCTCNAGCCG
ATTGTCACGTATGTACTCTACTGTCGACTGTGCCACGATTTTGTANCTGGCGGNATATACGCATCATTCTTTGTNCGGCATCGTATACCTTGTGTCTGCG
TTNGACGACACGCGTNCTANCTGTGTACTNATCACTGTTACTATACACAATGCTGCGCGATACTATCATCGTNGTGCTACANTGNTACATACAGACGTGT
ATATGACTATATACGNTGTGTGGTGCTGAGTTAACTGGTGTGACATCTGTCATGTGTTNGACATGTATGTCTGCACTCTCTCGTGATAAGCACTGACAGT
CCGTGCCTGGNCGGTGCCGCACGCGCACGCGCTCTGACTTGTGCTGTGCTGCATTGTNTGGATTGTCGCAGCTGTCGCTCATGACACTCTCATCCTCGTG
TGTGCGTGGTCCATGTGACCTGCANACTGTCGGATTGGTNTGTCCTGTTGCATTTGCCGTGTCTTGCGTGCTGTACTCCATCGATACTGTATATGACGTC
GGTGTCGGCTCGCCGGTGGTTGTGTTTGATCGTTAGTCGGCGCGCTGCGCTTCGCCGGCTGGTGACGTGTGCTACCCCGCATCTTGTCGTGCTGCTGGTT
ACGTGTGTCGGGTGAGTCCTGCTCTTTCNTACCTGTCGTTCTNACCTCTCTCTTAGTGTGCATTCTGCGTGCGCACGTCCTCCAAGTGTGACGCTACCAT
GCGCGCATGTTCGGCTCTGTCGCNGTGGTCAAAGTGCGGTTCGACGACTGATACTCCGAACGACAGTAGATGTGTTGATACATGCATGCTACTTTGCATG
CCGGATGCANGGACGTGGCATGTTAGCGTGCGCGGATGGTGTGTCTGGGAGGAAGATACGCCTGTGTGTACATGCCGTCGGTCGGGCGATGGTTCTGGCG
CTCTTGTGCGGCGCTCCCATCCTNCTCTGATTCGCGTCCTGTCTTGCTGCTCTCGTCGTACGTCATTACGTTTTGCACGTCTGGCTGGCGCGGACCATGC
NTCGTGATNATCTTCGTCTGGTTATGTCTGGTAGAGCTGATGACTCTTGTCGTTGCCGTAGTCTCGCTTGCATGTCATGTGCTGGCGTGCTCTATCTGTG
CTGTCGTCTAGTGATGCNGTTCTGTATGTNGTGGCTGCGACTGC
>LE_HBa0188H19_SP6_113644 (trimmed for quality and cloning vector)
N

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0188H19
Clone
Clone name
hba-188h19
LE_HBa0188H19
P188H19
Clone type
BAC
Contamination
none
Estimated length
108,669
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found