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Clone Read LE_HBa0188H19_T7_113645

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0188H19_T7_113645
Primer
T7
ID from Seq. Facility
LE_HBa_188_H19-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1180 raw
Sequence
>LE_HBa0188H19_T7_113645 (raw untrimmed)
CACCAGTTTATCGGTGGTACTACGGGGGGAAATTCTCCTTAGACGGCGTTACGTGGCTGAGCAGTGACGAAGCTGTGAGACGTATNCTATTTATATTTTT
GCCCCCTTTTAAGGGANGAGTGATGATTAAGNATGTGGCGTNTTATTGTAATGGAATCTCCCTTTAAGGAGGTGTTTGATAGATATATAAGTGGTGGTAA
GTTAAATTAATGTTTAAAAATATGTTAGGGATTAGGTGTTGTAGTTAGTGGTTGTTTCCCCTTTAGTAATCTATCACACTGGAACCTATAACCCTATTTG
TAAAAATGGAATTACATCGCTGTATACGAATGATACCATATCTGTTGTGTGCTTTCTGTTTGTCGCGCCGTCCTGCTTTGCGATAAGATACCACTTAACT
ATTGACTATCCCGCGCTCTAAGTGCAGAACACATAGAGATTATTTATTACTTTTTGTAATATTAGTAATGTTGTTCTCTCTTGGTTGGATGGTATAGTGG
GCGGTATACGGCTGTA
ATATATGGCATTCTTACTTATAATACCTGCTCTTACCTCTTTTCTTCATCCCTGGACTTATATCCCTGTCCTTCTTAATGACTG
CGGAAGGCACTCTGTTAGTTTGTTTTGTGCTTCGTGACTTTGTTGTGCATTGCAGCTCTGCTGTGTCTTCACTGCTACTATATTTCGTTGTATCTATATA
AAAATTTTGGTTCTCTTCTTATAGTTTATAACTAAAGGTATATGCTATTTGTTTGTATAGTATCGTTGCTTTATACTTGCACGATGTGTATACAGGATAC
TCTCTACTTATCCAATCTTGCTTAAATCATACTCTCAGATTTTCACTTAGTATTTATGTAATGTTATCCTGTTTATAATGGCTTAGTTGTTCTTCATTTC
GTTGGCTTGATGTGAGAGAGTTTACTATCATAATGATTCTAGGGATTATAACATGTGTTACGCCTTTAATGTATATCTTGCTATGTTTTGAGCTTTGCTT
CCACTTGTCTATCTTGTAGACCACATGGCTTCTATATTGCCTATTATTACTATAGTTGATGTCGATGCTGTTTATATTGTTGGATTGAGACATGTTACAA
ACGCCTATGTAGATGTATGATATATTTATTTATCTTAGGGCGTGATAGTTTGATGTCTGAATAAAGAGAATAAAGATGAG
>LE_HBa0188H19_T7_113645 (trimmed for quality and cloning vector)
AT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.6641
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0188H19
Clone
Clone name
hba-188h19
LE_HBa0188H19
P188H19
Clone type
BAC
Contamination
none
Estimated length
108,669
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found