Clone Read LE_HBa0015M08_T7_129988

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0015M08_T7_129988
Primer
T7
ID from Seq. Facility
LE_HBa_015_M08-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
924 trimmed for vector and quality, 972 raw
Genbank Accession
DU051296
Sequence
>LE_HBa0015M08_T7_129988 (raw untrimmed)
CGTAAGCTGGTACCGGGGGTTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTTTATTTCGAAGATTTTCTCTACCTTTTAGGGGATCTCAGTATAAA
GACGCTCCCCATAAGATTCCTCTGAGGGAGTTTCCAACACCGCTTTATTATTATCATCCTTTCCCCGATAGAAGTATTCCTTCAGTGACTCATCATCTAT
ACGGTGATTGGGGACTCTTCTAAAAAACGAGGTGAATCTATCCCAATAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTGTTTACTCTGTCTTTG
TGGTTTAGTTTCTTGGAGACCGGGTAGTATCGTGCTAAGAAAACGTCCCTTAGTTGGTTCTAAGTGAAAATTGAGTTGTAAGGGAGCTCAATGAACCAAA
TAGCAGCATCTCCCATCAGTGAGAGAGGAAACACTCTCAGACCTATTACATCCAAGTCCAAGTCAGGCCTCTTCCCAAAACTTTTACACACTGCCTTACC
TTAGCTATATGGGCATGTGGATCCACAGAAGGTAGCCCTGAAAACAAACCTCTGGCAGTGAGCATTTACATCAGTCTACTAGTTACCACTAAGGTGTGGC
CTGGTTGTAGAGGGGGCAAGACAAGTGGCCCATCGGAGTTTGCTATATTGTCATAGCCTCTGTAGTATTCTTGGGGCCGTGGAGCGGGATTGTGTCCTCT
CTGTTGGTTTTCACCAGGAGCATCGGGTAACAACTGACCATGAACATCAACCAGAGCTGGGATGCTCAGGTTTGGATCATCATCATTAATTCCTAAGTTT
CGATTCATGTTGCGTAGTGTACGCTCTAATTTGTGATCGTAAGGAAACAAGGGTTCTCTCCCTCTCCGTGTATTTGGCATACAAGGAAGATGGTTCTACA
AGAATCAAAACAATAAAACAAGTAAAATCAAGAAAATACAATTAACTATAATATACCCTAAATTATCTAAAA
>LE_HBa0015M08_T7_129988 (trimmed for quality and cloning vector)
AGCTTTTTTATTTCGAAGATTTTCTCTACCTTTTAGGGGATCTCAGTATAAAGACGCTCCCCATAAGATTCCTCTGAGGGAGTTTCCAACACCGCTTTAT
TATTATCATCCTTTCCCCGATAGAAGTATTCCTTCAGTGACTCATCATCTATACGGTGATTGGGGACTCTTCTAAAAAACGAGGTGAATCTATCCCAATA
ACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTGTTTACTCTGTCTTTGTGGTTTAGTTTCTTGGAGACCGGGTAGTATCGTGCTAAGAAAACGTCC
CTTAGTTGGTTCTAAGTGAAAATTGAGTTGTAAGGGAGCTCAATGAACCAAATAGCAGCATCTCCCATCAGTGAGAGAGGAAACACTCTCAGACCTATTA
CATCCAAGTCCAAGTCAGGCCTCTTCCCAAAACTTTTACACACTGCCTTACCTTAGCTATATGGGCATGTGGATCCACAGAAGGTAGCCCTGAAAACAAA
CCTCTGGCAGTGAGCATTTACATCAGTCTACTAGTTACCACTAAGGTGTGGCCTGGTTGTAGAGGGGGCAAGACAAGTGGCCCATCGGAGTTTGCTATAT
TGTCATAGCCTCTGTAGTATTCTTGGGGCCGTGGAGCGGGATTGTGTCCTCTCTGTTGGTTTTCACCAGGAGCATCGGGTAACAACTGACCATGAACATC
AACCAGAGCTGGGATGCTCAGGTTTGGATCATCATCATTAATTCCTAAGTTTCGATTCATGTTGCGTAGTGTACGCTCTAATTTGTGATCGTAAGGAAAC
AAGGGTTCTCTCCCTCTCCGTGTATTTGGCATACAAGGAAGATGGTTCTACAAGAATCAAAACAATAAAACAAGTAAAATCAAGAAAATACAATTAACTA
TAATATACCCTAAATTATCTAAAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.974087
Expected error %
1.3758
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38730.1| Score 141 E Value 2e-32 Identity 17.40% Align. Length 431bp (46.65%) Frame 1
putative reverse transcriptase [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAB18645.1| Score 73 E Value 6e-12 Identity 29.30% Align. Length 457bp (49.46%) Frame 1
unknown [Hordeum vulgare] pir||T06196 hypothetical protein - barley
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0015M08
Clone
Clone name
hba-15m8
LE_HBa0015M08
P015M08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found