Clone Read LE_HBa0017C24_T7_130308

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0017C24_T7_130308
Primer
T7
ID from Seq. Facility
LE_HBa_017_C24-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
719 trimmed for vector and quality, 901 raw
Genbank Accession
DU049564
Sequence
>LE_HBa0017C24_T7_130308 (raw untrimmed)
TCTGACCGGTACCGCGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCTAATTCAATTTTACATGTTAAATTGAGATTTTTGGTGTTTAAAACCC
CTAATTTTGAGTTTTCAGGACTCGAACAATCTGAAAGATGCATTGAAATACTCGGCTCAGATGCTCTCGGAGCTCCGAACTTCCAAGCTTTCTCCTCACA
AATACTATGAACTATGTAAGTGGTTTTCACTGATCGGATCTGCTCGTACTTTATAAGTTGGAACTCGGAGATCCTTTAACTGCAGTATTGGAATTGTGCT
CTTTGATTTGTTAGATATGCGCGCATTTGATGAATTGAGGAAATTAGAGATCTTCTTCAGAGAGGAGACAAATCGTGGCTGCTCCATTGTTGAGTTGTAT
GAGCTCGTGCAGCACGCTGGCAACATTTTGCCTAGATTGTAAGTTGTTATGTTCCTATGTTACTCCTATTTCTGGAAGCTTAATTATGGAAGGAAAGGAA
CTCAAGATGATCTGTAGAGAGTTCTAATCCACTTTGGAATGTAAAACCTGTCTAATTTTGTTTTCCAATTGGTATGAAGTGGAGTATGCAAATTAGGCTG
AAGCTTTGTGAGACACTACATAGTCTTCACAAGGACAGATTCAAACATATAGCTTTTTCTTTTTAATCCTATTTTAAGTATTCCATACTGCTGTTTGGTC
ATCAATGGATCTTATTTTTTACTGGTAAAAGAATAATTTGCTTAAACTTGTAGTCTTAATATAAATATTTAATCTGCCAACACCATAGATTTAGAACCAG
ATTGGGGTAGTCAATTGGGGTTAACCTACAGGGGTCAAGGAAGAGCTACCAGTTGGACGTTTCAGTCTCCCAACTCTGAATATCATTAGGCTGCTGGAAA
A
>LE_HBa0017C24_T7_130308 (trimmed for quality and cloning vector)
AGCTTCTAATTCAATTTTACATGTTAAATTGAGATTTTTGGTGTTTAAAACCCCTAATTTTGAGTTTTCAGGACTCGAACAATCTGAAAGATGCATTGAA
ATACTCGGCTCAGATGCTCTCGGAGCTCCGAACTTCCAAGCTTTCTCCTCACAAATACTATGAACTATGTAAGTGGTTTTCACTGATCGGATCTGCTCGT
ACTTTATAAGTTGGAACTCGGAGATCCTTTAACTGCAGTATTGGAATTGTGCTCTTTGATTTGTTAGATATGCGCGCATTTGATGAATTGAGGAAATTAG
AGATCTTCTTCAGAGAGGAGACAAATCGTGGCTGCTCCATTGTTGAGTTGTATGAGCTCGTGCAGCACGCTGGCAACATTTTGCCTAGATTGTAAGTTGT
TATGTTCCTATGTTACTCCTATTTCTGGAAGCTTAATTATGGAAGGAAAGGAACTCAAGATGATCTGTAGAGAGTTCTAATCCACTTTGGAATGTAAAAC
CTGTCTAATTTTGTTTTCCAATTGGTATGAAGTGGAGTATGCAAATTAGGCTGAAGCTTTGTGAGACACTACATAGTCTTCACAAGGACAGATTCAAACA
TATAGCTTTTTCTTTTTAATCCTATTTTAAGTATTCCATACTGCTGTTTGGTCATCAATGGATCTTATTTTTTACTGGTAAAAGAATAATTTGCTTAAAC
TTGTAGTCTTAATATAAAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.95752
Expected error %
0.1667
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g17790.1 Score 123 E Value 9e-29 Identity 21.20% Align. Length 320bp (44.51%) Frame 1
68415.m02062 vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein similar to vacuolar protein sorting 35 [Mus musculus] GI:11875394; contains Pfam profile PF03635: Vacuolar protein sorting-associated protein 35
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g75850.1 Score 115 E Value 2e-26 Identity 19.30% Align. Length 320bp (44.51%) Frame 1
68414.m08810 vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein similar to vacuolar protein sorting 35 [Mus musculus] GI:11875394; contains Pfam profile PF03635: Vacuolar protein sorting-associated protein 35
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T08858 Score 123 E Value 4e-27 Identity 21.20% Align. Length 320bp (44.51%) Frame 1
vacuolar protein-sorting protein homolog A_TM017A05.7 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_179370.1| Score 123 E Value 4e-27 Identity 21.20% Align. Length 320bp (44.51%) Frame 1
vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein [Arabidopsis thaliana] pir||E84556 probable vacuolar sorting-associated protein [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0017C24
Clone
Clone name
hba-17c24
LE_HBa0017C24
P017C24
Clone type
BAC
Contamination
none
Estimated length
107,634
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found