Clone Read LE_HBa0167K07_T7_13165

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0167K07_T7_13165
Primer
T7
ID from Seq. Facility
LE_HBa_167_K07-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
783 trimmed for vector and quality, 827 raw
Genbank Accession
DU031799
Sequence
>LE_HBa0167K07_T7_13165 (raw untrimmed)
ACTCGGTCCCGAGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGCCCTCAAAAGAACAGGTAACCAATATTCCCTTTTTATTTTACTTCAATTA
TATTTTTCCCAATATACTATAAGGTCAAAATATTTGTTTTTGGTATCATACTTCACTTTTTCCTTTTTTCTGGAAACCCCTTTTTATCTCCATTTGACCA
TTTAAGCTTCATTTTACACAAAAAGTTTGGATCTTGACAATAAAAAATTGGGTCCATAGTGAACCCATCTCAAGAATCTTGATGAGATGAAACTTTTCGT
TCCATAACAATGAATTTGACAATACAAAGCAATAGAGTAAATTTAAGTAACAATCAAAAAACAAATAATGTATTTAAAGTAACAATAGATAAACCATCCA
AACAAGCTGTAAAAAGGGTTAATCATCTTGATCTTTTCTTGTGTTAATTTAGTAGTATTAGTTTCTAATAGTTTCTTTCAATAATTGAAACCTGTACAAG
TTGATGATACTCACAGAAGCTAATATGTGTACTCACCGTGAAAATCCAGGACATGAATGGACAGCTTTGGCACATTTAATTACAGCAGTAATTGGTTCTG
GTGTTCTATCATTAGCATGGAGCATGGCACAGCTAGGTTGGGTTGCTGGTCCATTGACTATGCTCGTATTTGCTTGTGTCTCTCTTACTTCTGTATTTCT
TCTCTGCAATTGCTATAAGTCTCCTGATCCAGAAACTGGCCCTGATAGGAATGGCTGTTATCTTGATGCTGTACAAAAGATTTTAGGTGAGAATTCAAGC
TAAGAATAAATTAGAAAAAATCCTATG
>LE_HBa0167K07_T7_13165 (trimmed for quality and cloning vector)
AGCTTGCCCTCAAAAGAACAGGTAACCAATATTCCCTTTTTATTTTACTTCAATTATATTTTTCCCAATATACTATAAGGTCAAAATATTTGTTTTTGGT
ATCATACTTCACTTTTTCCTTTTTTCTGGAAACCCCTTTTTATCTCCATTTGACCATTTAAGCTTCATTTTACACAAAAAGTTTGGATCTTGACAATAAA
AAATTGGGTCCATAGTGAACCCATCTCAAGAATCTTGATGAGATGAAACTTTTCGTTCCATAACAATGAATTTGACAATACAAAGCAATAGAGTAAATTT
AAGTAACAATCAAAAAACAAATAATGTATTTAAAGTAACAATAGATAAACCATCCAAACAAGCTGTAAAAAGGGTTAATCATCTTGATCTTTTCTTGTGT
TAATTTAGTAGTATTAGTTTCTAATAGTTTCTTTCAATAATTGAAACCTGTACAAGTTGATGATACTCACAGAAGCTAATATGTGTACTCACCGTGAAAA
TCCAGGACATGAATGGACAGCTTTGGCACATTTAATTACAGCAGTAATTGGTTCTGGTGTTCTATCATTAGCATGGAGCATGGCACAGCTAGGTTGGGTT
GCTGGTCCATTGACTATGCTCGTATTTGCTTGTGTCTCTCTTACTTCTGTATTTCTTCTCTGCAATTGCTATAAGTCTCCTGATCCAGAAACTGGCCCTG
ATAGGAATGGCTGTTATCTTGATGCTGTACAAAAGATTTTAGGTGAGAATTCAAGCTAAGAATAAATTAGAAAAAATCCTATG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.943868
Expected error %
0.80231
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g23810.1 Score 100 E Value 9e-22 Identity 18.50% Align. Length 248bp (31.67%) Frame 2
68418.m02795 amino acid transporter family protein similar to amino acid carrier [Ricinus communis] GI:3293031; contains Pfam profile PF01490: Transmembrane amino acid transporter protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g09220.1 Score 98 E Value 5e-21 Identity 20.40% Align. Length 239bp (30.52%) Frame 2
68418.m01045 amino acid permease 2 (AAP2) identical to amine acid permease AAP2 [Arabidopsis thaliana] GI:510236
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAE03052.2| Score 113 E Value 5e-24 Identity 21.40% Align. Length 251bp (32.06%) Frame 2
OSJNBa0089K21.6 [Oryza sativa (japonica cultivar-group)] ref|XP_472826.1| OSJNBa0089K21.6 [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD53557.1| Score 101 E Value 2e-20 Identity 20.80% Align. Length 239bp (30.52%) Frame 2
putative amino acid carrier [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0167K07
Clone
Clone name
hba-167k7
LE_HBa0167K07
C07HBa0167K07
P167K07
Clone type
BAC
Contamination
none
Estimated length
74,918
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found