Clone Read LE_HBa0023K06_T7_134496

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0023K06_T7_134496
Primer
T7
ID from Seq. Facility
LE_HBa_023_K06-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
695 trimmed for vector and quality, 922 raw
Genbank Accession
DU044500
Sequence
>LE_HBa0023K06_T7_134496 (raw untrimmed)
GGGGACCCCGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTATTACTGTTTGAATAAACACAGTCCTTTTTTATCCTCCGTTTAAATATCTGCT
TAATTTGTGATATCTTCAGAGATGTGGAAGATTGGATGACCAAATAGTCCTGTTGAGGCACAAATTGTTTTTGATACAACAAGGTTTGGCCTTTAATGGA
AAGCGTACGAAGACTGCGAGATCCCAGGGGAAGAAGTTTCAGGTTTCTGTGGAGCAAGAAGCAACTAGATTACTGGTAAATATAGAATTGTGAGACTTGT
ACTTCATAGTTTTGGATCTCACCTATGAAAATGAATATTGTTTGATAACAATTATTTGTCAATCTTCCAGGGGAATTTAGGGTGGGCGCTGATGCAACAA
AATAACTACATTGAAGCTGAGGATGCTTATCGTAGGGCACTAGTGATTGCACCAGACAACAACAAAATGTGCAATTTGGGCATCTGCTTGATGAAACAAG
GGAGAGTAGGTGAGGCAAAAGAGACACTTAGGAGAGTTAAACCAGCGGTGATAGATGGCCCCAGAGGTGTAGATTCTCATCTCAAGGCCTATGAAAGAGC
ACAGCAGATGCTCCGCGACCTCGAGTCTGAAATGATGAATAAAGGTGGTGATAGAATTGAACCAAGGAAACTGTTTGATGCCTTCTTGGGCCTCTTCTGC
TATCTGGCAGCCTCAGCCTTGCAAGGAACATACTTACTATCACTTTGAGTTAAACCTACCAAGCTTAACCCACCCTCAAAATGAATTTGCTAATGATAAC
ATCAATTCTCCTAACCTCCTTCCGAAAACCCAGACAGCTCCTTCCCCCGCCAAAATAGATGGAAACCCCAAATTTTTTTTTTTTGGGGGAAATCCTCCTC
CAAATCTTCCAATTCCCCCCCC
>LE_HBa0023K06_T7_134496 (trimmed for quality and cloning vector)
AGCTTATTACTGTTTGAATAAACACAGTCCTTTTTTATCCTCCGTTTAAATATCTGCTTAATTTGTGATATCTTCAGAGATGTGGAAGATTGGATGACCA
AATAGTCCTGTTGAGGCACAAATTGTTTTTGATACAACAAGGTTTGGCCTTTAATGGAAAGCGTACGAAGACTGCGAGATCCCAGGGGAAGAAGTTTCAG
GTTTCTGTGGAGCAAGAAGCAACTAGATTACTGGTAAATATAGAATTGTGAGACTTGTACTTCATAGTTTTGGATCTCACCTATGAAAATGAATATTGTT
TGATAACAATTATTTGTCAATCTTCCAGGGGAATTTAGGGTGGGCGCTGATGCAACAAAATAACTACATTGAAGCTGAGGATGCTTATCGTAGGGCACTA
GTGATTGCACCAGACAACAACAAAATGTGCAATTTGGGCATCTGCTTGATGAAACAAGGGAGAGTAGGTGAGGCAAAAGAGACACTTAGGAGAGTTAAAC
CAGCGGTGATAGATGGCCCCAGAGGTGTAGATTCTCATCTCAAGGCCTATGAAAGAGCACAGCAGATGCTCCGCGACCTCGAGTCTGAAATGATGAATAA
AGGTGGTGATAGAATTGAACCAAGGAAACTGTTTGATGCCTTCTTGGGCCTCTTCTGCTATCTGGCAGCCTCAGCCTTGCAAGGAACATACTTAC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.971685
Expected error %
0.9534
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g51280.1 Score 186 E Value 2e-50 Identity 83.20% Align. Length 617bp (88.78%) Frame 1
68416.m05613 male sterility MS5, putative similar to male sterility MS5 [Arabidopsis thaliana] GI:3859112; contains Pfam profile PF00515 TPR Domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g04770.1 Score 76 E Value 5e-28 Identity 44.80% Align. Length 514bp (73.96%) Frame 1
68414.m00473 male sterility MS5 family protein similar to male sterility MS5 [Arabidopsis thaliana] GI:3859112; contains Pfam profile PF00515 TPR Domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB62650.1| Score 186 E Value 8e-49 Identity 83.20% Align. Length 617bp (88.78%) Frame 1
MS5-like protein [Arabidopsis thaliana] gb|AAP21246.1| At3g51280 [Arabidopsis thaliana] ref|NP_190696.1| male sterility MS5, putative [Arabidopsis thaliana] pir||T45759 MS5-like protein - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC72542.1| Score 186 E Value 9e-49 Identity 83.20% Align. Length 581bp (83.60%) Frame 1
MS5-like protein [Arabidopsis thaliana] pir||T51865 MS5-like protein [imported] - Arabidopsis thaliana (fragment)
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0023K06
Clone
Clone name
hba-23k6
LE_HBa0023K06
C02HBa0023K06
P023K06
Clone type
BAC
Contamination
none
Estimated length
79,042
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found