Clone Read LE_HBa0170B07_SP6_13561

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0170B07_SP6_13561
Primer
SP6
ID from Seq. Facility
LE_HBa_170_B07-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1789 raw
Sequence
>LE_HBa0170B07_SP6_13561 (raw untrimmed)
CATCACAATATCACTATATACGACACATGACATCAGTCTCACAGTACACGCGAATACACGACTGCANACATGCTAGAGAGTGCTTGTCNTGCTGCTTTCT
AGTAGCATACAATGTCGACTACTGCTATTCACAAGAGNGAATATGATATNCTCGATGAGACGGACCTCACCTGCGTGTGTACGACGGTGAGCTACGATTA
GCGANCACTGTGCGCGACAAGTAGAAGTGCTCNANAGTAATCNTNTAGTCAGTCGCGAGTGANCTNCNCTCTTCTTAATGTCNGCACTGAGNACTCATTT
NCNATCGTACGAAGNCGGATACAGTGCNTGANTGTGAGACGATACTATGATCTGTCTTGCCTGCTTGAGATACGNCTNANTTATACTGTTACTATCGCAA
GTAGGTGGTATATATAGACTGNCATCATCCTGTTCAANATGATATAAGCTCGGCGTACATACGACTCACGCATGACTTNTCGCACGTAGCATNCGANGAC
ACNCTTNGGCTCTCGTGGAGAGATAGAACNAGAGAATCGTCTCAGNATAGCGGNCTCCTAGAACCCANATCNGCGNCATGAGTACGTAAGCATATACGCA
ACTAATCATATNANGCATGTTATACCAACTGAGATATTCGACCTTGATCAGCGACGCTCTCGCACGAGCGAACATGCTACGTACTGATGTATACGTAAGG
ACACCAGCAANTTCCAGTTGCGTGATACGAGATTACATGTGATCACATATACTAGCGAACATTGTCGCCCTCGATATCATGCGCACTCGCTTATANTGAC
TATTCACTTCTAGGTATCCTCGTACGNCGATATAGTGCNTATTGTGCATGTTAATGTGATANGNGCACTCGCCCTACACANGNTAGNGAGTATCCCGCCA
CTATACAGACTGTCAGTCATGTTACGTTNTGACAGAGACAACAGATCTCGAGTAGAAGATTTTATTGCAGCGTGTGCGGTGGGAAACCTCACAAATACTA
CAAAGNCTAGATGTCTTATTCTTATTCTTCTATTACGTCNCATCCACATTACCACACANCACTTGACATACACGTACGCATGGCTCCTCTCACGCTGCCC
TCACCAAATACAGATAAAAATATACGTNCACGACTACTCATTGACATATTATCATATACATATACAGCTTTTACATGACGTATACTATACATTCTTACAT
CTTATAAGTACACGTGTACTCTGTCCGTCTGNCTTCTCATACAAGTACATACGTCTGCTATATACTACTTCAGATCCGTATTACATACTCTCTCTGCTAT
TCCACTCGGTTGCACTCTACGCGCACACATTGAGATGATCTGTACATCTATATATATAGTCACTACAACATCATCATCNCTTCTGTCCGCATCATATCAT
CATCCTCTGTCACCCTCTTGCTCTCCTCACATTAGCCTAATANGCTCTATGACCTACACTATCTCTATTCCATTGTTCGCTGACTTATNTCTATGCTCTC
ACTCACTATATCATGTAATCTCGATCAACTACTANTATATGTCTNCTTTCTTACATACTGACTATAATTGCTTGTATAACTGCGTTCACTCTGCCTTGTT
GGACTCTTGCTTGTNTATATAGTTACACGTATTCTCACTATCTACGCACTGACTCACTANACACGTACTACTTCATTATTATGCGCGATCCTAACCTAGA
TGACTTCACGTATAACTTCTAAGCACNTNTGATGCGTCACATCTCATGCTCTAGCGTCGCGGCGTTACTGATCTCATTGGCTCGCAGCG
>LE_HBa0170B07_SP6_13561 (trimmed for quality and cloning vector)
AC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.04763
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0170B07
Clone
Clone name
hba-170b7
LE_HBa0170B07
C03HBa0170B07
P170B07
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found