Clone Read LE_HBa0170B07_T7_13563

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0170B07_T7_13563
Primer
T7
ID from Seq. Facility
LE_HBa_170_B07-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
356 trimmed for vector and quality, 740 raw
Genbank Accession
DU032142
Sequence
>LE_HBa0170B07_T7_13563 (raw untrimmed)
GGTTTGTGATTAAATATGGCCTTACCGCAAAACTATAGGTAGTAGCTAGGTGTCTATGTCCAATACTTGGAATTAGTGCGCCGAACTCTACGGGGCCCAT
TTGAAGGGTCAAATTCACTGCCCCTAATGTGTCTCTTTGAACACCATCAAACGCTCTTACATTAACCTTTTTCTGCTTCACTTTCCCGAGGTCAAAATTT
AGGTTCCTCAACATCGACAATGGGCAGATATTCAAACCGGATCCATCATCTACCAAAACACGGTTGACAACCTTGTCACGACATATCACGGTAATGTGCA
ACGCTTTGTTGTGTGATCTTCCTTCGACTGGCAACTCATTGTAACAAAAGTTGATTCGGTGCCCCCGAATAACTTGATGAATCATGGCAGCTATGTTATC
ACTACTTGTACCTGAGGTACATATGTATCGTCAAGAGATTTCATTAAAAGCCTGCCTGAGGGACTTGACAGCTCATCTAGCAAGGCCCATATGGTTATTT
TAGCCGGATTCATCTCTAGATATATGCAAATGAAAACTATTCTCAATTGCATCCTTTCTAAAATTACTTCAGTCCTTTAAAACTAAGCCTCCTATTATAT
AAAAAACTTTCCTTCGCCATTTCAAAATAAATTTTTCATCTTTATTATACAGTTGTTCACCTCTGTATTGATCAGTCATAATATATATATATAAATCTTA
AATATAAATATGCTGTCTACATTAAATCTGTTAATAATAC
>LE_HBa0170B07_T7_13563 (trimmed for quality and cloning vector)
TGTCTATGTCCAATACTTGGAATTAGTGCGCCGAACTCTACGGGGCCCATTTGAAGGGTCAAATTCACTGCCCCTAATGTGTCTCTTTGAACACCATCAA
ACGCTCTTACATTAACCTTTTTCTGCTTCACTTTCCCGAGGTCAAAATTTAGGTTCCTCAACATCGACAATGGGCAGATATTCAAACCGGATCCATCATC
TACCAAAACACGGTTGACAACCTTGTCACGACATATCACGGTAATGTGCAACGCTTTGTTGTGTGATCTTCCTTCGACTGGCAACTCATTGTAACAAAAG
TTGATTCGGTGCCCCCGAATAACTTGATGAATCATGGCAGCTATGTTATCACTACT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.979249
Expected error %
0.46382
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89777.1| Score 135 E Value 3e-31 Identity 25.20% Align. Length 245bp (68.82%) Frame 1
gag-pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAQ82035.1| Score 82 E Value 4e-15 Identity 13.00% Align. Length 323bp (90.73%) Frame 1
gag/pol polyprotein [Pisum sativum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0170B07
Clone
Clone name
hba-170b7
LE_HBa0170B07
C03HBa0170B07
P170B07
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found