Clone Read LE_HBa0035G11_SP6_141225

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0035G11_SP6_141225
Primer
SP6
ID from Seq. Facility
LE_HBa_035_G11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
669 trimmed for vector and quality, 956 raw
Genbank Accession
DU043724
Sequence
>LE_HBa0035G11_SP6_141225 (raw untrimmed)
GGGGTTAACATATGTAGACTTTTGCTTTGTAGTTCTCGCTGATGGTATTATTATTTGTCTAGGTTATTTAAGGATTTATTTCACTCTGTACTTATCCTTG
CAGGGTGTTTGACAAATGGATATCAACAGCCAACTTCCAATTTCTTGGTCAGTTCGGGTGGGAATAATTTGGTACCATCAATGAGTGGGCAAAGAATGAC
AAGCCAAATGATCCCCACTCCAGGGTTTAATGCCAGTGGTGGTGCTAATTTGAATAGCAACACTAACACACAGTCTTCCCTGAATTTGGACTCAACCAAT
AGTATTGCTGCACTTCCTAGTGTTGATTCCATGAATGTTTCACAGCCTCTGCAACAAAAGCAGCATGTTGCTGCTCAAAACAGCCGTATACTCCATACAG
TTGGCAGCCATGTGGGTGGTGGAATCAGGTCAGGATTTCAGAATAGATCCTATGGACAGTCAACTGGGCCTCTTAATGGAGGGGGACTTGGAATGATTGG
AAACAATTTGCACTTGGTGAATGGTTCAGCACCTGAGGGCTATATATCAGCAACCACGTATGGGAACTCCCCAAAGTCATTGCCGCAGCACTTCGATCAA
CAGCATCAACCATTAATGCAAGGTGCTCCCACTTTCAACAAGTGCCCATAAAATAACTCCTGCAGTCGGATTGTTTCAAACTTCAAATAATATATGAGAA
TTTTTCAATTTTTTTTTTTGGACAGGTGATAGATATGGTATCAGTCATGCAGATTCTTCGGGGTCTGGAAACTTATGTCTTCCTGTTTCTTCTGTGGGAA
TTGGTCATGATAATCAAAAACCGGGGTGCTGTTACCTACAGTCCTTCTCCAAAACAACTCCTCGTGGATTCCATTCATCCAACTTTACTGCTTCGGGGCA
AGCCAATTGTAAAGTCCACCTCCATCCTTCACCAAATAAATTTCCCCCCTTTTTCT
>LE_HBa0035G11_SP6_141225 (trimmed for quality and cloning vector)
TCTAGGTTATTTAAGGATTTATTTCACTCTGTACTTATCCTTGCAGGGTGTTTGACAAATGGATATCAACAGCCAACTTCCAATTTCTTGGTCAGTTCGG
GTGGGAATAATTTGGTACCATCAATGAGTGGGCAAAGAATGACAAGCCAAATGATCCCCACTCCAGGGTTTAATGCCAGTGGTGGTGCTAATTTGAATAG
CAACACTAACACACAGTCTTCCCTGAATTTGGACTCAACCAATAGTATTGCTGCACTTCCTAGTGTTGATTCCATGAATGTTTCACAGCCTCTGCAACAA
AAGCAGCATGTTGCTGCTCAAAACAGCCGTATACTCCATACAGTTGGCAGCCATGTGGGTGGTGGAATCAGGTCAGGATTTCAGAATAGATCCTATGGAC
AGTCAACTGGGCCTCTTAATGGAGGGGGACTTGGAATGATTGGAAACAATTTGCACTTGGTGAATGGTTCAGCACCTGAGGGCTATATATCAGCAACCAC
GTATGGGAACTCCCCAAAGTCATTGCCGCAGCACTTCGATCAACAGCATCAACCATTAATGCAAGGTGCTCCCACTTTCAACAAGTGCCCATAAAATAAC
TCCTGCAGTCGGATTGTTTCAAACTTCAAATAATATATGAGAATTTTTCAATTTTTTTTTTTGGACAGG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.965697
Expected error %
0.3618
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g79000.1 Score 77 E Value 1e-14 Identity 10.50% Align. Length 551bp (82.36%) Frame 2
68414.m09212 p300/CBP acetyltransferase-related protein 2 (PCAT2) contains Pfam domains PF02135: TAZ zinc finger and PF00569: Zinc finger, ZZ type; identical to cDNA p300/CBP acetyltransferase-related protein 2 GI:12597460
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g16710.1 Score 65 E Value 3e-11 Identity 11.30% Align. Length 485bp (72.50%) Frame 2
68414.m02003 TAZ zinc finger family protein / zinc finger (ZZ type) family protein contains Pfam profiles PF02135: TAZ zinc finger, PF00569: Zinc finger, ZZ type
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02019 Score 195 E Value 1e-48 Identity 19.50% Align. Length 521bp (77.88%) Frame 2
callus-associated protein - common tobacco (fragment) gb|AAA03633.1| callus associated protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_565197.2| Score 77 E Value 5e-13 Identity 10.50% Align. Length 551bp (82.36%) Frame 2
p300/CBP acetyltransferase-related protein 2 (PCAT2) [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0035G11
Clone
Clone name
hba-35g11
LE_HBa0035G11
P035G11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found