Clone Read LE_HBa0080M20_SP6_20966

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0080M20_SP6_20966
Primer
SP6
ID from Seq. Facility
LE_HBa_080_M20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
612 trimmed for vector and quality, 773 raw
Sequence
>LE_HBa0080M20_SP6_20966 (raw untrimmed)
GGTTAATTCTTATTTCTCGCCGTTCCCCTTAATTAGATTCAACCTACTCAGCTTCTTGTTCGCGATCGATCCTTAAAGGGTANAAGGTATTTNTTTTATT
TNAATTTATATGAATTATTTTTGTTTTTGATNGGTTTAAATAAAATCCCTTATTTTTATATTTATTTTANGTTTAGAGGATAAATTGAAAAGTTTTTTTT
TAAAAAAAAATTGTGTGAAGTTAAANTAAGTAATATGAAATGAGATGGGNAGTAATATGTATGTTNTTTTNTTTTNATAAATTTATAATTATATTTTTTT
GTATATGTTTTTTTATTTTTTATGATGTTGTAAATTTGNATATGGGTTGAANTGGTATTGATTAAATGTTTTTTTATAATTATATTAANANTTATTTATT
TTTGTGGGTTTAATAAAGAATGGTTTAGTTTAATTTGGTAGGGAGTTGATAAAAAGATTTTTGATTATGTGATTATAAATTAAAGTTATGTNAAATGTNA
AAATTATNATTTAATTTTGTGGTTTTAAATATGTGATATGAAAAATTANTANAAAAAAAATNATTATTATTTAAATAGATTAAAAAGAAAAAAAATTATT
TTTTTAAATGGAGAAAATATATAAATATAGATTATAGAGAGTTATAATTATATTTTAAATATATATTTTGATGATAAAAAGAGATTTGATAAGGTTGGGT
AAGAATGTGAATATTTTAATTTGAAGAAATTATGGATTTTTTTTTTTATTGTGAATGAATATGTTATTGATAA
>LE_HBa0080M20_SP6_20966 (trimmed for quality and cloning vector)
CAACCTACTCAGCTTCTTGTTCGCGATCGATCCTTAAAGGGTANAAGGTATTTNTTTTATTTNAATTTATATGAATTATTTTTGTTTTTGATNGGTTTAA
ATAAAATCCCTTATTTTTATATTTATTTTANGTTTAGAGGATAAATTGAAAAGTTTTTTTTTAAAAAAAAATTGTGTGAAGTTAAANTAAGTAATATGAA
ATGAGATGGGNAGTAATATGTATGTTNTTTTNTTTTNATAAATTTATAATTATATTTTTTTGTATATGTTTTTTTATTTTTTATGATGTTGTAAATTTGN
ATATGGGTTGAANTGGTATTGATTAAATGTTTTTTTATAATTATATTAANANTTATTTATTTTTGTGGGTTTAATAAAGAATGGTTTAGTTTAATTTGGT
AGGGAGTTGATAAAAAGATTTTTGATTATGTGATTATAAATTAAAGTTATGTNAAATGTNAAAATTATNATTTAATTTTGTGGTTTTAAATATGTGATAT
GAAAAATTANTANAAAAAAAATNATTATTATTTAAATAGATTAAAAAGAAAAAAAATTATTTTTTTAAATGGAGAAAATATATAAATATAGATTATAGAG
AGTTATAATTAT

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.852864
Expected error %
8.95432
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0080M20
Clone
Clone name
hba-80m20
LE_HBa0080M20
P080M20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found