Clone Read LE_HBa0224M24_SP6_377314

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0224M24_SP6_377314
Primer
SP6
ID from Seq. Facility
LE_HBa_224_M24-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
131 trimmed for vector and quality, 774 raw
Sequence
>LE_HBa0224M24_SP6_377314 (raw untrimmed)
TTTCTTTAGAGGGNANNNNNNNNNNCCANAGNNAAAANNNCATCTTTAAGGGGGAGNNNGGNNANNAGACNAAGCAAAANAANCAAAGCAGGAGAAANGC
AGGCGGCACCGGCGACACCGGAGAGGGNGNAANGNNNNGGGNGGAAGAAGAAGGGGGNGGNGGNGANANANNGNAAGNGGGGNNGNGGNNNGANNAAAAN
NAANGGAGNNNNNANNGAGNNGGNNNAGNNGGAGAANNNNNGGNANAAAGNNNNNGAGNNAANNTTTTTTNTAGGTNGTNAANGATTNGNNGGAGTTGAA
ATGAGAATNNGAGTNAAAGGAGGAGGTNATANTTNTNAGATTTTTTATANNNGNNAGNNAAAAGNAAAGGNTNTTTGGGGGGNNAANNAGAAGNANGNNG
AAGAGNAGAAGAAGAAGGAGAANAAGGANANNNNGATTNGATANGATAGGANTTTGNTTGTTGNTGATNNTAGANGTTGTGAGNN
TAAGAAGTTTGGTGG
TNGTGGTGGTNGTTNTAGGTTNNAGAAATNTTANNGTTAAATTTANGGTATATGTTNTATTGNTATTGGTGNTNTGNAATTTTGAGTATGGTTTNGATTT
TAGGGATTATTATTATTATTTATTNANNATTAAAGTTATTTGAGTAAGNTTTGGATTTTGATGAANNGTAATGTAGTTGTTTTANGGTGGAATGATTTTA
TGTTAAGTATGNATTGAAATATGTTTTTTNAAAGAATAATAAAAATTATGTTATATTTGTTGTTGTTAGAAAAT
>LE_HBa0224M24_SP6_377314 (trimmed for quality and cloning vector)
TAAGAAGTTTGGTGGTNGTGGTGGTNGTTNTAGGTTNNAGAAATNTTANNGTTAAATTTANGGTATATGTTNTATTGNTATTGGTGNTNTGNAATTTTGA
GTATGGTTTNGATTTTAGGGATTATTATTAT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
  • Not screened for contaminants
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.890718
Expected error %
21.9129
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0224M24
Clone
Clone name
hba-224m24
LE_HBa0224M24
P224M24
Clone type
BAC
Contamination
none
Estimated length
106,724
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found