Clone Read LE_HBa0118I04_SP6_40710

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0118I04_SP6_40710
Primer
SP6
ID from Seq. Facility
LE_HBa_118_I04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
797 trimmed for vector and quality, 896 raw
Genbank Accession
DU059956
Sequence
>LE_HBa0118I04_SP6_40710 (raw untrimmed)
GGGGCACTGTTTCTGTTATATCAAGGCCCACCATTGGGTTGTTGGATGAGTGCTAAGTTGGATTGTTTGCCACTCATGCTTTACATGTCAAATGGAACAT
AAAAATGTAGGTTAAAGGTCCTTTGTTGTATCATTACATTCTTATTCTTGTATTGTAAACAGTTTTCAGAGAACTTTACCATTATGCTGTTTCACTATGA
CGGCCGAACAACTGAATGGGATGACCTTGAGTGGTCAGCACGGGCTATCCATGTCAGTACACCGAAACAGACTAAATGGTACCTTTCTTGTAAATTCTTT
CTATCCTCAATTCTTCAACATATTTGATGGATATGTAAGTGCAGTGTTTATTCATTTTGTTGAAAGGTGGTATGCAAAACGTTTTCTACATCCTGACATT
GTAGCACCATATGACTATATATTCATCTGGGATGAAGACTTGGGGCTTGAAAATTTTAACGCGGAGGAGTAAGTGATTATAATTAGAGCCATGTGAATCA
ACAAATATATTGAATTATGTGGAGTCTTAAGGCTTAATGCAAATGCAGATATATAAAGTTGGTGACGAAACATGGTTTGGATATTTCACAGCCTGGTTTA
GAACCAAACAGTGGGTTGACATGGCAGATGACAAAAGGGAGAAATGACACTGAAGTTCACAAGTAGGGAACACAGTACTTTAATTTACCTACGGCTGCTT
TGATTAAAGCATATCATGCACAAAGCTTGATCTCATATACAATTTATTGCTTCTGCTAACAGGGAAACAGAGGAAAGGCCAGGCTGGTGCGCCGATCCAC
ATTTGCCACCTTGTGCAGCGTACGTAATGCTTGATATTTACCAATAACAACTCTTTGTCACTTAATGTTTGTGTCTCAGTATAATTAATCAAAAAG
>LE_HBa0118I04_SP6_40710 (trimmed for quality and cloning vector)
TTGTTGGATGAGTGCTAAGTTGGATTGTTTGCCACTCATGCTTTACATGTCAAATGGAACATAAAAATGTAGGTTAAAGGTCCTTTGTTGTATCATTACA
TTCTTATTCTTGTATTGTAAACAGTTTTCAGAGAACTTTACCATTATGCTGTTTCACTATGACGGCCGAACAACTGAATGGGATGACCTTGAGTGGTCAG
CACGGGCTATCCATGTCAGTACACCGAAACAGACTAAATGGTACCTTTCTTGTAAATTCTTTCTATCCTCAATTCTTCAACATATTTGATGGATATGTAA
GTGCAGTGTTTATTCATTTTGTTGAAAGGTGGTATGCAAAACGTTTTCTACATCCTGACATTGTAGCACCATATGACTATATATTCATCTGGGATGAAGA
CTTGGGGCTTGAAAATTTTAACGCGGAGGAGTAAGTGATTATAATTAGAGCCATGTGAATCAACAAATATATTGAATTATGTGGAGTCTTAAGGCTTAAT
GCAAATGCAGATATATAAAGTTGGTGACGAAACATGGTTTGGATATTTCACAGCCTGGTTTAGAACCAAACAGTGGGTTGACATGGCAGATGACAAAAGG
GAGAAATGACACTGAAGTTCACAAGTAGGGAACACAGTACTTTAATTTACCTACGGCTGCTTTGATTAAAGCATATCATGCACAAAGCTTGATCTCATAT
ACAATTTATTGCTTCTGCTAACAGGGAAACAGAGGAAAGGCCAGGCTGGTGCGCCGATCCACATTTGCCACCTTGTGCAGCGTACGTAATGCTTGAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.96564
Expected error %
0.396302
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g28310.2 Score 88 E Value 6e-35 Identity 35.30% Align. Length 669bp (83.94%) Frame 3
68415.m03438 expressed protein contains Pfam profile PF05212: Protein of unknown function (DUF707)
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g28310.1 Score 88 E Value 6e-35 Identity 35.30% Align. Length 669bp (83.94%) Frame 3
68415.m03437 expressed protein contains Pfam profile PF05212: Protein of unknown function (DUF707)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_465088.1| Score 92 E Value 1e-35 Identity 38.60% Align. Length 669bp (83.94%) Frame 3
unknown protein [Oryza sativa (japonica cultivar-group)] ref|XP_507466.1| PREDICTED OJ1654_A02.17 gene product [Oryza sativa (japonica cultivar-group)] ref|XP_506776.1| PREDICTED OJ1654_A02.17 gene product [Oryza sativa (japonica cultivar-group)] dbj|BAD21688.1| unknown protein [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD94744.1| Score 88 E Value 3e-33 Identity 35.30% Align. Length 669bp (83.94%) Frame 3
hypothetical protein [Arabidopsis thaliana] ref|NP_850119.1| expressed protein [Arabidopsis thaliana] ref|NP_850118.1| expressed protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0118I04
Clone
Clone name
hba-118i4
LE_HBa0118I04
C02HBa0118I04
P118I04
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found