Clone Read LE_HBa0121J06_SP6_42298

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0121J06_SP6_42298
Primer
SP6
ID from Seq. Facility
LE_HBa_121_J06-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 925 raw
Sequence
>LE_HBa0121J06_SP6_42298 (raw untrimmed)
AACGGGGGGAGGGCGGAGGTGGGGGGGGGGGGTAGGGGGAGGGTACGGGCTGGGTAGTGCAAGACCGGAGCCGCAGCTGGGCGGCTATATTACAGATCTT
GGAATGTTGAATGGGGAATCTTCCTGCACTACCCCACTGTTTACGTATATGTCTTTCCAGCAGCACGTCACTACTGTATCGCTAAAAAAAAAACATTCAG
CTCCTTATGCATACTATCTTGTGTGATTTACCGAACTCTAGGACGTA
TTATTGTTGCAAGCGTAGATTTCGTGAATTCTAGATACATATGAGTGTGGAAG
CGTAGTTCTCTTAAGTAAAGAGTTGGTCCTAGTATAAACAACATCTATAGTACCTCAGTCCCCGTAATCATCATCTCACTTGGACTCACAGACCAAATGA
AGATGTAACGTAATTTAATAGAATTTGTTGGGGCCCAATTTAGTTAAATTACCCGAACTCGATGGACGAACTTGCTAGGACAACACGGCACTACCTTATT
ATCAACAACACAACTCTTTATCCCCTTCTCTAAAAAAGGGTCCACAACCCCTATGAACTACAATAAACTATCTAATGCTACTCAACCTTCGTTTATCGGG
ATAACAGGACCGATGCATTCATCGATCTGCTCTAAAATTACCTTTCAGGCTCCTTTGTGCTCACTTAGATCCTTGCTACTAACACCCTGCTGATGTTTCT
TTTAAAATAATTATTATGCGTCATTGTCTCATTGAACGAACATAAAATCCACCTCTATTAAAATAGTTGGCTTTGGGGCAAAATAGCTTATATAAACTAC
TAAATTGCCAATTTTTAAAAAAATTTATTTTTGTGGAACCAGGAAAAAAAAACCTTTTGGCGGGTTTCTTATTTATCCTTCCCTTCACCAAAAAAAATTG
TTTTAATATGGGTTATTATGTTTTC
>LE_HBa0121J06_SP6_42298 (trimmed for quality and cloning vector)
TTA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.554613
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0121J06
Clone
Clone name
hba-121j6
LE_HBa0121J06
C08HBa0121J06
P121J06
Clone type
BAC
Contamination
none
Estimated length
150,740
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found