Clone Read LE_HBa0041J09_SP6_43072

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0041J09_SP6_43072
Primer
SP6
ID from Seq. Facility
LE_HBa_041_J09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
636 trimmed for vector and quality, 852 raw
Genbank Accession
DU059363
Sequence
>LE_HBa0041J09_SP6_43072 (raw untrimmed)
TTTTCCCTAATGCGGTTTTTTAATTATNNCCAACGCTCTCGCGATTGTAANTCTGAGAGCATAAAGTAGTTTCAATGTAGTAAATCCTCATTGGTGACCG
TATATAAAGAATAAGAGAAAGTAGCTTGTTATGATAACATTTAGGGATCGTTTGGTTTAAATACAAGTTATGCTGAGATTAGTTATGATGTGATAAGTTG
TGCTGAGATTAGTTATGATGTGATAAGTTGTGCTAAGATTAGTTATAATGTGATAAGTTGTGCTGAGATTAGTTATGATGAGATAAGTTATGCAGAGATT
ATTTCTTATTGAGTGTTTGGTTTGTTGTATTTAAAATAATACACATTATATAAATTTTAAGAACAACTCTTTTCAAAAATATCCTTCATGAATGCGAAAA
ATGATGATTAAAAAGGGTTTAAAGGGATATCTTTGTCATTTACCTATTTTATCACGGGATAAGTTATCCTAGGATTACTATACCACCCAAGGGAAAGGAT
AGCTTATCCCGGTACTAATATTAATCCCGGGATAAGTTATCTCGGACTTGCCAGCCAAACAACAAATTAAGTGACACTATAATTTAATCCCAAGACTATT
TGGTGATAGTCTTCACACCAAATGACCCCTTAGTGATAGCTGAATTAAGGAGGAAAGTTGTTAATTTACAAAGAAGCGTTTCTAGCTATTTTTAGTTTGA
CTATATATTTAGACTGTTGGTGTAAGAGAGGTTCTTTATCTTAACATGAATATTATTTCTGGGCCTTATTTAGAACTTTCTAAAACTTTTAACAAAAGGA
CAAATCCACTTTTGTTAACTTCCTTCCAAACCCCCCCTTGGGGAACTATTTC
>LE_HBa0041J09_SP6_43072 (trimmed for quality and cloning vector)
AACGCTCTCGCGATTGTAANTCTGAGAGCATAAAGTAGTTTCAATGTAGTAAATCCTCATTGGTGACCGTATATAAAGAATAAGAGAAAGTAGCTTGTTA
TGATAACATTTAGGGATCGTTTGGTTTAAATACAAGTTATGCTGAGATTAGTTATGATGTGATAAGTTGTGCTGAGATTAGTTATGATGTGATAAGTTGT
GCTAAGATTAGTTATAATGTGATAAGTTGTGCTGAGATTAGTTATGATGAGATAAGTTATGCAGAGATTATTTCTTATTGAGTGTTTGGTTTGTTGTATT
TAAAATAATACACATTATATAAATTTTAAGAACAACTCTTTTCAAAAATATCCTTCATGAATGCGAAAAATGATGATTAAAAAGGGTTTAAAGGGATATC
TTTGTCATTTACCTATTTTATCACGGGATAAGTTATCCTAGGATTACTATACCACCCAAGGGAAAGGATAGCTTATCCCGGTACTAATATTAATCCCGGG
ATAAGTTATCTCGGACTTGCCAGCCAAACAACAAATTAAGTGACACTATAATTTAATCCCAAGACTATTTGGTGATAGTCTTCACACCAAATGACCCCTT
AGTGATAGCTGAATTAAGGAGGAAAGTTGTTAATTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.941291
Expected error %
0.420228
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0041J09
Clone
Clone name
hba-41j9
LE_HBa0041J09
C08HBa0041J09
P041J09
Clone type
BAC
Contamination
none
Estimated length
96,570
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found