Clone Read LE_HBa0066J22_T7_50779

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0066J22_T7_50779
Primer
T7
ID from Seq. Facility
LE_HBa_066_J22-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
704 trimmed for vector and quality, 813 raw
Sequence
>LE_HBa0066J22_T7_50779 (raw untrimmed)
CTGGGACCCCGGGGAATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGAGATTTGGATTTATATGAAATTGAAGGTGCTGAGACAAAGGGTGAAGTTC
TTCAGAACCTAACTGAATTTCAATTCTCATGCGTAAGTTTCGCCTTCTTAGTGTTAGAATCCTCTAATAAGCTTGTTGTTTGATCTTCAGACTTCTAAGT
ACTGATTTGGTAGTGGGAGAATGAAATCAGTCTTCAGATAATTATATTGACTGCTAATAAAATGATTTCTTTCAAGGTGATGAATATGATGTTCTAAAAT
TGGGTAAATGGCAATCTGTCTTTTCCAGATGATGTACAATGCAGTTCTAGAGAACGCTACTAGTGAGCAAGGAGCAAGAATGTCTGCCATGGATAGTTCC
AGCAGAAATGCTGGTGACATGCTTGATCGTCTCACTCTTACTTACAACAGGTCTTACTTTTCACCCTGTCCCTATCACACACATTTGCACTGCCAAGCTC
TCATAGATGCATACTTTGTTTACCTCAGATGATTGTTTAATTATGAGGATAACTTATATTATTGATAGTTGATCAGCTCTTTGTTGTCTGTCATTTAACC
AGTCTTCTTCTAATTTTTCTGTGAACCAGAACCCGTCAAGCATCTATCACCACAGAGTTGATTGAGATCATATCAGGAGCATCAGCACTGGAGGGTTAAT
TGGACATGCTACTCTGCTTTTATTTGACGGAGACCATAAATGATGTGTAAGGTTTCTTAGCACCCTGTGGTGACCAATTATCATTTTTGATTATGAATAA
ATACCAGGGTTAC
>LE_HBa0066J22_T7_50779 (trimmed for quality and cloning vector)
AGCTTGGAGATTTGGATTTATATGAAATTGAAGGTGCTGAGACAAAGGGTGAAGTTCTTCAGAACCTAACTGAATTTCAATTCTCATGCGTAAGTTTCGC
CTTCTTAGTGTTAGAATCCTCTAATAAGCTTGTTGTTTGATCTTCAGACTTCTAAGTACTGATTTGGTAGTGGGAGAATGAAATCAGTCTTCAGATAATT
ATATTGACTGCTAATAAAATGATTTCTTTCAAGGTGATGAATATGATGTTCTAAAATTGGGTAAATGGCAATCTGTCTTTTCCAGATGATGTACAATGCA
GTTCTAGAGAACGCTACTAGTGAGCAAGGAGCAAGAATGTCTGCCATGGATAGTTCCAGCAGAAATGCTGGTGACATGCTTGATCGTCTCACTCTTACTT
ACAACAGGTCTTACTTTTCACCCTGTCCCTATCACACACATTTGCACTGCCAAGCTCTCATAGATGCATACTTTGTTTACCTCAGATGATTGTTTAATTA
TGAGGATAACTTATATTATTGATAGTTGATCAGCTCTTTGTTGTCTGTCATTTAACCAGTCTTCTTCTAATTTTTCTGTGAACCAGAACCCGTCAAGCAT
CTATCACCACAGAGTTGATTGAGATCATATCAGGAGCATCAGCACTGGAGGGTTAATTGGACATGCTACTCTGCTTTTATTTGACGGAGACCATAAATGA
TGTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.955286
Expected error %
0.219857
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g33040.1 Score 74 E Value 6e-14 Identity 28.60% Align. Length 125bp (17.76%) Frame 2
68415.m04052 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC04688.1| Score 80 E Value 7e-14 Identity 31.70% Align. Length 125bp (17.76%) Frame 2
ATP synthase gamma chain [Solanum tuberosum] pir||T06998 probable H+-transporting two-sector ATPase (EC 3.6.3.14) gamma chain precursor, mitochondrial - potato (fragment)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD91202.1| Score 76 E Value 7e-13 Identity 29.40% Align. Length 125bp (17.76%) Frame 2
mitochondrial F1-ATPase gamma subunit [Ipomoea nil]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0066J22
Clone
Clone name
hba-66j22
LE_HBa0066J22
P066J22
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found