Clone Read LE_HBa0002N16_T7_53263

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0002N16_T7_53263
Primer
T7
ID from Seq. Facility
LE_HBa_002_N16-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
741 trimmed for vector and quality, 791 raw
Genbank Accession
DU078754
Sequence
>LE_HBa0002N16_T7_53263 (raw untrimmed)
ACCTGGGTCCCGGGGTTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGATTGAAATTCTTACGTTCTATATACTCTGAAAGTTTACTCAGAAAACTTC
TACACTCAGGTTTTATTTTTTCATAATTCAGATAGCTAACCATAGGATGTTTGGTGCTACTATGGCTTTTAGTAATAGCATAATCTTTCATCCACATTGG
CTCCTTGATGCTTCTTGAAGATCTTCTAACATAAGAGTCAGCATGTGATGGTATGGCATGAGTATTTTCAGAAACTTCCTCTGTTGTACTAGGTCTAGAC
ATCTGATCTTCTGAAGAATTCTCAGTTTCATTACTCTGACTGTCTTCATGAACTGTACTAGTGTCTGCAGGCTCACTATCATCAATCTCAGCTTCAATAG
TTTGACTTTCTGCTTTCTCTAAAGGTGAACCATGTACATCAACCAATGGATCAAGTTGAGGCATCACTTTAGCAAATGGAAATATTTCTTCATGAAATAT
CACATCTCTATTCACATGCACCTTAGTAGAGTGGATATCCAATAATACATATCCTTTATGTAATTCTAAATACCCTAAGAGAATAGCTGCACTAGCTCTG
GCTGAAATGTTCTCCCCTTTAGGCACTGTTGTAGCATAGCAAAGACAACCTATAACCTTTAGATGAGACAAACTAGGTTGTTTACAATAAAGTAACTCAT
AGACACTCTTGTTGGAATTGACTGAGGAGGGTAATCTCTTCATCAAATACACTGCAGCCTTAATGCAATAACCCCAAAATCTGATAGGTAG
>LE_HBa0002N16_T7_53263 (trimmed for quality and cloning vector)
AGCTTGATTGAAATTCTTACGTTCTATATACTCTGAAAGTTTACTCAGAAAACTTCTACACTCAGGTTTTATTTTTTCATAATTCAGATAGCTAACCATA
GGATGTTTGGTGCTACTATGGCTTTTAGTAATAGCATAATCTTTCATCCACATTGGCTCCTTGATGCTTCTTGAAGATCTTCTAACATAAGAGTCAGCAT
GTGATGGTATGGCATGAGTATTTTCAGAAACTTCCTCTGTTGTACTAGGTCTAGACATCTGATCTTCTGAAGAATTCTCAGTTTCATTACTCTGACTGTC
TTCATGAACTGTACTAGTGTCTGCAGGCTCACTATCATCAATCTCAGCTTCAATAGTTTGACTTTCTGCTTTCTCTAAAGGTGAACCATGTACATCAACC
AATGGATCAAGTTGAGGCATCACTTTAGCAAATGGAAATATTTCTTCATGAAATATCACATCTCTATTCACATGCACCTTAGTAGAGTGGATATCCAATA
ATACATATCCTTTATGTAATTCTAAATACCCTAAGAGAATAGCTGCACTAGCTCTGGCTGAAATGTTCTCCCCTTTAGGCACTGTTGTAGCATAGCAAAG
ACAACCTATAACCTTTAGATGAGACAAACTAGGTTGTTTACAATAAAGTAACTCATAGACACTCTTGTTGGAATTGACTGAGGAGGGTAATCTCTTCATC
AAATACACTGCAGCCTTAATGCAATAACCCCAAAATCTGAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.95027
Expected error %
0.194674
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU93584.1| Score 137 E Value 4e-31 Identity 10.40% Align. Length 740bp (99.87%) Frame 2
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAB61111.1| Score 131 E Value 2e-29 Identity 11.10% Align. Length 740bp (99.87%) Frame 2
Strong similarity to Zea mays retrotransposon Hopscotch polyprotein (gb|U12626). [Arabidopsis thaliana] pir||G96722 hypothetical protein F20P5.25 [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0002N16
Clone
Clone name
hba-2n16
LE_HBa0002N16
P002N16
Clone type
BAC
Contamination
none
Estimated length
105,518
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found