Clone Read LE_HBa0003D15_SP6_53548

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0003D15_SP6_53548
Primer
SP6
ID from Seq. Facility
LE_HBa_003_D15-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
527 trimmed for vector and quality, 817 raw
Genbank Accession
DU078996
Sequence
>LE_HBa0003D15_SP6_53548 (raw untrimmed)
GTTAGGATCTTTATTGGTGAGGGTGGTGAGGTGAGCATGTTAACCTAGGTGGAGAGGAAGTGGATGATAACCCTTGTGGAGAGGAAGTGGAAGATAACCT
AGGTGATGAAGATGCCTCTGATTTCTTGAGTAGTGATTCAGATTTTGATATACCTTCATAAGATGGTTCAAGTATTGATGAGGAGCTGAGATCTTTTAGA
GAAGAAAGAAGAAACAAAAAACAGAGAAAAAAGGCTACTGAATCTGAAGAAATACCAATTGGAGAGGCTGGTGGTATAGATAGAGGCTTTGAGGATATTG
GAAAGAACAAAACTGACAAATATGCAGAAAAATTGGGTGGAGATGAAGATTACATTGATAGCTCTGACTGTTGGAGTGATGATAAGGATGAAAAACTAGA
TGTGGATGCTGTTAGGGGAGTAGACATACCTGCTAGAAGGAGAAGCAAAAAGGTTAGGTATGATGAAGATTGTGAAGTTTCAATTTTTGAGCTTGGAATG
GTCTTTGAAGGTGCAAATCATTTCAGTATAGCAGTGGCAGATTATGCTGTATAGTATAGAATACAGTTATAGCTAAGACCTAATGAGAAACATAGAGTGA
GGGTGAAGTGCAAAAATAGTAAATGTAAGTGGTTGTTATATCCTTTCGATTAACATGGACTCAAGTTGATATTATTGTAAAGAACCTATCATCCTATTCT
CGAGTGGAATCCATTAATACATTATAATTTTGTGGAATTTAAAACTTTATTACTATAAACGTATAAGAGCATAATATTATTTTATAATCGTTGCAAAATG
ATTTATTGGAGTTTTTA
>LE_HBa0003D15_SP6_53548 (trimmed for quality and cloning vector)
TGGTGAGGTGAGCATGTTAACCTAGGTGGAGAGGAAGTGGATGATAACCCTTGTGGAGAGGAAGTGGAAGATAACCTAGGTGATGAAGATGCCTCTGATT
TCTTGAGTAGTGATTCAGATTTTGATATACCTTCATAAGATGGTTCAAGTATTGATGAGGAGCTGAGATCTTTTAGAGAAGAAAGAAGAAACAAAAAACA
GAGAAAAAAGGCTACTGAATCTGAAGAAATACCAATTGGAGAGGCTGGTGGTATAGATAGAGGCTTTGAGGATATTGGAAAGAACAAAACTGACAAATAT
GCAGAAAAATTGGGTGGAGATGAAGATTACATTGATAGCTCTGACTGTTGGAGTGATGATAAGGATGAAAAACTAGATGTGGATGCTGTTAGGGGAGTAG
ACATACCTGCTAGAAGGAGAAGCAAAAAGGTTAGGTATGATGAAGATTGTGAAGTTTCAATTTTTGAGCTTGGAATGGTCTTTGAAGGTGCAAATCATTT
CAGTATAGCAGTGGCAGATTATGCTGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.907781
Expected error %
0.218883
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAW28576.1| Score 138 E Value 6e-32 Identity 19.50% Align. Length 368bp (69.83%) Frame 2
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0003D15
Clone
Clone name
hba-3d15
LE_HBa0003D15
C01HBa0003D15
P003D15
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found