Clone Read LE_HBa0101F11_SP6_56708

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0101F11_SP6_56708
Primer
SP6
ID from Seq. Facility
LE_HBa_101_F11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
707 trimmed for vector and quality, 792 raw
Genbank Accession
DU080509
Sequence
>LE_HBa0101F11_SP6_56708 (raw untrimmed)
TATTTATGGATGCCTTCGGTGTTTTCTTAGATTGATTTGAGGTCTGGGTACCATAAGCTAAAGATTAGGGCAGCGATATCCCTAAGATCGCGTTTTAGGA
CTCGTTACAACTACTATGGGTTCCTTGTATTGTCGTTTGAGTTGACTAATGCCCCAGGCGCCTTCATGGACTTAATGACACGTGTGTTCAAGCCATACCT
TGATTAATTTGTTAACGTCTTAATTGATGACATACTGGTATACTCGTGGAGCTGGAGTGAGCATGAGCAACATTTGAGTTAGTGCTCCAAACTTTGAGAG
ATCAGCGACGTTATTCCAAGTTCTCAAAGTGCGAGTTTAGGATTCAGTCTGTTGCATTCTTGGGGCACGTGGTATCCAAGGAGGGTATTAGGGTTGATCC
GGTGAAGACTGAGTCTATTCGTGGTTGGGACAAACCCACTTCTTTTAGAAAGTTACTACAATGCTTTGTTGAGGGATTTTCTACTATTGCAGCTCCTTTG
ACTCGGTTGACTCACTAGGATATTCCCTTTGTGTGGTGAGAGGAGTGTAAGATGATATTTCGGAAGCTCAAGGAGTTGATTATTACGGCATGTATATTGA
TTCTTCCTATTGAAGGCGAGGGCTTCGCAGTTTGTTGTGACACATTCGACATTGGTTTAAGTTGTGTATTGATACCGCAGGGTCGGGTTATTGCTTTGCG
CCGAGGCAACTTAAGGCCCATGAGAAAAACTAATCCATACATAACTTGGAGTTGGTGGAAATAGTTTTCACGCTTAAGATTTAAATCACTAC
>LE_HBa0101F11_SP6_56708 (trimmed for quality and cloning vector)
GTTTTCTTAGATTGATTTGAGGTCTGGGTACCATAAGCTAAAGATTAGGGCAGCGATATCCCTAAGATCGCGTTTTAGGACTCGTTACAACTACTATGGG
TTCCTTGTATTGTCGTTTGAGTTGACTAATGCCCCAGGCGCCTTCATGGACTTAATGACACGTGTGTTCAAGCCATACCTTGATTAATTTGTTAACGTCT
TAATTGATGACATACTGGTATACTCGTGGAGCTGGAGTGAGCATGAGCAACATTTGAGTTAGTGCTCCAAACTTTGAGAGATCAGCGACGTTATTCCAAG
TTCTCAAAGTGCGAGTTTAGGATTCAGTCTGTTGCATTCTTGGGGCACGTGGTATCCAAGGAGGGTATTAGGGTTGATCCGGTGAAGACTGAGTCTATTC
GTGGTTGGGACAAACCCACTTCTTTTAGAAAGTTACTACAATGCTTTGTTGAGGGATTTTCTACTATTGCAGCTCCTTTGACTCGGTTGACTCACTAGGA
TATTCCCTTTGTGTGGTGAGAGGAGTGTAAGATGATATTTCGGAAGCTCAAGGAGTTGATTATTACGGCATGTATATTGATTCTTCCTATTGAAGGCGAG
GGCTTCGCAGTTTGTTGTGACACATTCGACATTGGTTTAAGTTGTGTATTGATACCGCAGGGTCGGGTTATTGCTTTGCGCCGAGGCAACTTAAGGCCCA
TGAGAAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.972049
Expected error %
0.180288
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 180 E Value 5e-69 Identity 66.20% Align. Length 694bp (98.16%) Frame 3
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 178 E Value 2e-71 Identity 63.00% Align. Length 694bp (98.16%) Frame 3
putative polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0101F11
Clone
Clone name
hba-101f11
LE_HBa0101F11
P101F11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found