Clone Read LE_HBa0012C02_T7_5859

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0012C02_T7_5859
Primer
T7
ID from Seq. Facility
LE_HBa_012_C02-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
798 trimmed for vector and quality, 841 raw
Genbank Accession
DU025461
Sequence
>LE_HBa0012C02_T7_5859 (raw untrimmed)
CCGGGTCCCGAGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTGTACATTTGCAGAAAGATGAGAGGTCAAAGTTAGATGCCAAGATAAGGCA
ATGCATCTTTATTGGATATAGCCTAGATGAATTTGGTTACAGGCTATATGATCCAATTGAAAAGAAACTTGTGAGAAGCTGTGATATTATTTTCATAGAG
AATCAAACAATTGAAGATATTGACAAAATGGAGAAGGTAAAATCTTAAAGTTTTGATGGTATAGTTCATCATGTGCATGATGTTGTTGGGCTTGATAATC
ATGGTGACACCCAAAATCATGTATCGAGTCAATGTTGATGTTGATAATAACAATGATATCGTTATTGATGATCCTGTTGCTCATGAAGTTGTGGACGAAC
AAAATATTCCGATTTGGAGGTCCACAAGACAACGGTTTCCTTCCTCCCGTTATTCACCCAATGAGTATGTTTTACTCACTGACGGGGGAGAACCTGAATG
TTATGAGGAGGCCATGGAAGATGAGCACAAGGATCAATGGATTGAAGCCATGCAATATGAGATGAAGTCTCTGTATGAGAACCACACTTATGAGTTGGCT
AAACTGCCTAAGGGCATGAGAGTATTGACTTTGACGAAATATTTTCTCCTATTGTGAAAATGTCCTCGATTCGCATAGTTCTAGGTTTGGCTGCTAGTCT
TAATTTAGAGATTGAGCAGATGGATGTGAAGACGGATTTTTTTCACTGTGACCTAGAAGAAGAGATTTATATGGAACAACCTGAGGGCTTCAAAGTAGAT
GTAAAGAAAATTTTATGTGCAAACCTCAAAAAGAGTCTATA
>LE_HBa0012C02_T7_5859 (trimmed for quality and cloning vector)
AGCTTTTGTACATTTGCAGAAAGATGAGAGGTCAAAGTTAGATGCCAAGATAAGGCAATGCATCTTTATTGGATATAGCCTAGATGAATTTGGTTACAGG
CTATATGATCCAATTGAAAAGAAACTTGTGAGAAGCTGTGATATTATTTTCATAGAGAATCAAACAATTGAAGATATTGACAAAATGGAGAAGGTAAAAT
CTTAAAGTTTTGATGGTATAGTTCATCATGTGCATGATGTTGTTGGGCTTGATAATCATGGTGACACCCAAAATCATGTATCGAGTCAATGTTGATGTTG
ATAATAACAATGATATCGTTATTGATGATCCTGTTGCTCATGAAGTTGTGGACGAACAAAATATTCCGATTTGGAGGTCCACAAGACAACGGTTTCCTTC
CTCCCGTTATTCACCCAATGAGTATGTTTTACTCACTGACGGGGGAGAACCTGAATGTTATGAGGAGGCCATGGAAGATGAGCACAAGGATCAATGGATT
GAAGCCATGCAATATGAGATGAAGTCTCTGTATGAGAACCACACTTATGAGTTGGCTAAACTGCCTAAGGGCATGAGAGTATTGACTTTGACGAAATATT
TTCTCCTATTGTGAAAATGTCCTCGATTCGCATAGTTCTAGGTTTGGCTGCTAGTCTTAATTTAGAGATTGAGCAGATGGATGTGAAGACGGATTTTTTT
CACTGTGACCTAGAAGAAGAGATTTATATGGAACAACCTGAGGGCTTCAAAGTAGATGTAAAGAAAATTTTATGTGCAAACCTCAAAAAGAGTCTATA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.952817
Expected error %
0.698493
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV88069.1| Score 110 E Value 3e-45 Identity 73.80% Align. Length 794bp (99.50%) Frame 3
hypothetical retrotransposon [Ipomoea batatas]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02206 Score 105 E Value 2e-45 Identity 70.30% Align. Length 794bp (99.50%) Frame 3
hypothetical protein - common tobacco retrotransposon Tto1 dbj|BAA11674.1| ORF(AA 1-1338) [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0012C02
Clone
Clone name
hba-12c2
LE_HBa0012C02
P012C02
Clone type
BAC
Contamination
none
Estimated length
92,195
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found