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Clone Read LE_HBa0134A15_SP6_60316

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0134A15_SP6_60316
Primer
SP6
ID from Seq. Facility
LE_HBa_134_A15-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
0 trimmed for vector and quality, 868 raw
Sequence
>LE_HBa0134A15_SP6_60316 (raw untrimmed)
GGAAGGTTGGAGGCCTGCGGGTGGACTCTAGAGGACTCCGGGTACCGAGCTCGAGTTCGCGCTATAGTGAGTCGTATTACAATTCACTGGCCGTCCTTTT
ACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACC
GATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGCGCCTGATGCGGTATTTTCTCCTTACCCATCTGTGCGGTATTTCACACCGCATATGGT
GCACTCTCAGTACAATCTGCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGAACCCCTTGCAAGCCGCATCAAATAT
AACTTCTAAGGATGTATGCAATACCAAGTTATTATCGATGAGGGCGGAGTTCCATTGCTCATTCCTCGGACAAAAACCCAGAAAGGAGACAAGTAAGAGA
GGATTGCTCACCTACGGACATGTTCGTATCCTATTCAATTAATATGGTAATTTTAAGAATATTCTGTTAATATACCAAAGAAGATTAGATACGAACTAAA
AGTGGAAAGATACAAGGGATGATTCTAACCGCGACGTCCCGCACATCTTAACCACTCAGATCTCTGGAGAGGGAACTAAGAGAGCACGCGAGTAGCACCA
ACTAAACGCAACGTGCGTGGGGGGCATGAAAACCATGACATAATAAATCTTGACGGCAGGGTAATCATGGTAGGTTTCTGTAACATAACCGAAAACCTAC
CTCGGACAATACTAAGTAGCTAGCCAAAGACCGGGGCAAGCAAGGTACGAAATGGGAGATCTTTCCAT
>LE_HBa0134A15_SP6_60316 (trimmed for quality and cloning vector)

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
  • Probable foreign DNA contamination
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
3' read, short insert
Quality trim threshold
14.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0134A15
Clone
Clone name
hba-134a15
LE_HBa0134A15
C02HBa0134A15
P134A15
Clone type
BAC
Contamination
none
Estimated length
121,816
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found