Clone Read LE_HBa0048I16_T7_63775

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0048I16_T7_63775
Primer
T7
ID from Seq. Facility
LE_HBa_048_I16-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
546 trimmed for vector and quality, 850 raw
Genbank Accession
DU071950
Sequence
>LE_HBa0048I16_T7_63775 (raw untrimmed)
TCGGGACCCGAGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTATGCTATGTTTTCAAAGTGTCACGTTCTGGCTCAGTTTGGTAGCATTGTTG
GGACATATAGTGTCCAAGGAGGGTATTATGGTGGACCCCAAGAAGATTGAGGCGGTTAGATATTGGGTCAGACCTGCTTCAGTCGCTGAGATTCAGAGGT
TTTTAGGCCTTACTGGTTATTATAGACGGTTTATAGAGGTTTTCTCATCCATTGCCTCACCATTAACTATATTGACACAGAAGAAGGTGACTTTTCAATG
GTCTAATGAGTGTGAAGTTAGTTTCCAAAAGCTCAAGACTTTACTGACTACTACTCCGATTTTGACCCTACCTATGGAGGGAGAAGGTTTTGTTGTATAT
TCTGATGCTTCTCGAATTGGTCTGGGTTGTGTATTGATGTGGAAGGGAAAGGTGATACCTTATGCGTCTAGGCAGTTGAACGTTCATGAGAACAACTACC
CTATTCATGATTTACAATTGGCGACTGTTGTGTTTGCATTGAAGATTTGTATCCGTTATCTGTATGATGTGCATTGCGAGGTGTTCACTGATCTTCTTAT
TCTCCCTTATATATTCAATAAGAGAGATCTCAGTTTGAGGCAGTGGAGATTGTTGGAGTTGGTCAATAACTACAAAATGACTATTTTTTTATCCTCCCCG
CAAATTGATATTGCTTTTATTAGGGGTTTTTATTTGGAAGGCATTGGGTTTTTTTATTCTAGCCTTTGTACGGGATATCTAGTGTCTTTTTTATTTTTGT
TGTTCCTTCATTGGACACCCCTTTTTAGTATCATGTGATATTATCGAAAA
>LE_HBa0048I16_T7_63775 (trimmed for quality and cloning vector)
AGCTTTATGCTATGTTTTCAAAGTGTCACGTTCTGGCTCAGTTTGGTAGCATTGTTGGGACATATAGTGTCCAAGGAGGGTATTATGGTGGACCCCAAGA
AGATTGAGGCGGTTAGATATTGGGTCAGACCTGCTTCAGTCGCTGAGATTCAGAGGTTTTTAGGCCTTACTGGTTATTATAGACGGTTTATAGAGGTTTT
CTCATCCATTGCCTCACCATTAACTATATTGACACAGAAGAAGGTGACTTTTCAATGGTCTAATGAGTGTGAAGTTAGTTTCCAAAAGCTCAAGACTTTA
CTGACTACTACTCCGATTTTGACCCTACCTATGGAGGGAGAAGGTTTTGTTGTATATTCTGATGCTTCTCGAATTGGTCTGGGTTGTGTATTGATGTGGA
AGGGAAAGGTGATACCTTATGCGTCTAGGCAGTTGAACGTTCATGAGAACAACTACCCTATTCATGATTTACAATTGGCGACTGTTGTGTTTGCATTGAA
GATTTGTATCCGTTATCTGTATGATGTGCATTGCGAGGTGTTCACT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.957295
Expected error %
1.73193
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 220 E Value 2e-56 Identity 20.20% Align. Length 530bp (97.07%) Frame 2
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 219 E Value 4e-56 Identity 20.30% Align. Length 530bp (97.07%) Frame 2
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0048I16
Clone
Clone name
hba-48i16
LE_HBa0048I16
P048I16
Clone type
BAC
Contamination
none
Estimated length
85,477
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found