Clone Read LE_HBa0138D11_T7_70437

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0138D11_T7_70437
Primer
T7
ID from Seq. Facility
LE_HBa_138_D11-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
760 trimmed for vector and quality, 807 raw
Sequence
>LE_HBa0138D11_T7_70437 (raw untrimmed)
CCTGGGTCCCGAGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGATTCAGAAGACAACTTATCTAACCTCTGTTTTTCTCATCTTCTGTCAAAT
TTAAGACCCTTTCTACTAATTGTTTCTGAAGGAAAGTGACGTGCTATAGCTTGAAAACTGGTCTTTGTTCTTCCATTTAGCTTGAAGAATTAACTGCTAT
AATATTTCCCATGTCCTGATTGTTCAAGTGCCTTCTGTGTGCATTCTCTCCTTTTTATGTCAGATGCATTCCACGCACATCAGAAATTTCCCTTGATGGC
AAGTTCAGGGAGACAGCGGATGATATCTGAAACAGGCGATTTGAGTAATGAAATTAGTTTTGGAAATGTCAAAGAAATGGATGATGTATATGGCACTGGG
CTAAAGAATGAAGTTGGAGAATACAATTGCTTTCTAAATGTCATTATACAGGTTAGCTGTGTTTACAAGTGCTAATCCATTGTTTTATTTTATAATAGAC
AAATTATCTTTGTTTCTCGCGCTCCCAGTTTTCTTCTATTTCAAGAGCGTTCTCTGATTTTTCTTGTTTTCTCTTCACATTTTAGTCATTGTGGCATCTA
AGACAATTTCGAGACGATTTTTTGCGAAGATCATCATCAGAACATGATCATGTGGGTGATCCATGTGTGGTATGTGCTTTATATGACATATTCACTGCTT
TGAACACGGCTTCAACTGAGATGCAGAGAGAGGCTATTGCTCCTACTTCTCTGAGAATTGCTCTCAGCAACCTTTATCCCAATAGTAATTTCTTTCACGA
GGTAAAT
>LE_HBa0138D11_T7_70437 (trimmed for quality and cloning vector)
AGCTTGATTCAGAAGACAACTTATCTAACCTCTGTTTTTCTCATCTTCTGTCAAATTTAAGACCCTTTCTACTAATTGTTTCTGAAGGAAAGTGACGTGC
TATAGCTTGAAAACTGGTCTTTGTTCTTCCATTTAGCTTGAAGAATTAACTGCTATAATATTTCCCATGTCCTGATTGTTCAAGTGCCTTCTGTGTGCAT
TCTCTCCTTTTTATGTCAGATGCATTCCACGCACATCAGAAATTTCCCTTGATGGCAAGTTCAGGGAGACAGCGGATGATATCTGAAACAGGCGATTTGA
GTAATGAAATTAGTTTTGGAAATGTCAAAGAAATGGATGATGTATATGGCACTGGGCTAAAGAATGAAGTTGGAGAATACAATTGCTTTCTAAATGTCAT
TATACAGGTTAGCTGTGTTTACAAGTGCTAATCCATTGTTTTATTTTATAATAGACAAATTATCTTTGTTTCTCGCGCTCCCAGTTTTCTTCTATTTCAA
GAGCGTTCTCTGATTTTTCTTGTTTTCTCTTCACATTTTAGTCATTGTGGCATCTAAGACAATTTCGAGACGATTTTTTGCGAAGATCATCATCAGAACA
TGATCATGTGGGTGATCCATGTGTGGTATGTGCTTTATATGACATATTCACTGCTTTGAACACGGCTTCAACTGAGATGCAGAGAGAGGCTATTGCTCCT
ACTTCTCTGAGAATTGCTCTCAGCAACCTTTATCCCAATAGTAATTTCTTTCACGAGGTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.958388
Expected error %
0.34007
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g47900.1 Score 112 E Value 3e-25 Identity 19.60% Align. Length 269bp (35.39%) Frame 3
68416.m05223 ubiquitin carboxyl-terminal hydrolase family protein contains Pfam profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g47890.1 Score 109 E Value 2e-24 Identity 19.30% Align. Length 269bp (35.39%) Frame 3
68416.m05222 ubiquitin carboxyl-terminal hydrolase-related contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein of unknown function (DUF629), PF04781: Protein of unknown function (DUF627)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_190373.2| Score 112 E Value 1e-23 Identity 19.60% Align. Length 269bp (35.39%) Frame 3
ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB41149.1| Score 112 E Value 1e-23 Identity 19.60% Align. Length 269bp (35.39%) Frame 3
putative protein [Arabidopsis thaliana] pir||T06693 hypothetical protein T17F15.230 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0138D11
Clone
Clone name
hba-138d11
LE_HBa0138D11
P138D11
Clone type
BAC
Contamination
none
Estimated length
87,695
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found