Clone Read LE_HBa0138P06_T7_71003

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0138P06_T7_71003
Primer
T7
ID from Seq. Facility
LE_HBa_138_P06-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
721 trimmed for vector and quality, 766 raw
Sequence
>LE_HBa0138P06_T7_71003 (raw untrimmed)
CCTGGGGACCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGGGAATTAAGTTTAGTAAGACTTTACACAGGTCTAGAAATGTGACGGAC
AAAAGGGATCTTGCCTAGGGGCGGAAGCTAAAGCGTTAAATGAAAACTTGAGTAGATGGCTTGAATAAAAAAGAATGTATGAATTCAATCATCAATTAAA
CTACCTAATTAATAGATGTAGCATAACTGGAATTCGTAATTAAATATATAAATACTAATTACATGCAATTCTATAATATATGTAGCATGTGCAGGAAACA
TGTAATTAAGGTACTAAGTATTAATTAAATCAAATCCTAAATATTTTAAAAGCCATGCACTACCAATAGGCAATATTCAACTGTATAAATAGCCGTCGTT
ACTAGCACATGAATTCAATCATCAATTAAACTGCGTAATTAATTAGGCCTAACCTTAGCTTATTGACATGGCTTCCAAAAATCAGGCCTCTATTACCCTT
TTCTTATCACTTAATCTCCTCTTCTTTGCTCTTGTAAGTGCAGACTGTTCAACTGATATTTTGAAATTTGGGGCATGTGCTAATATACTTAATGATTTGG
TGGGTGTAATTATCGGGACTACTCCAACTTCGTCATGCTGCAGTTTGATTGACGGACTGGTGGACCTAGACGCCGCGGTTTGCTTGTGCACAGCCCTAAA
AGCAGATGTGCTGGGAATTAATTTGGATATATCACTCTCTCTAAACATCCTTCTCAACGTCTGTGG
>LE_HBa0138P06_T7_71003 (trimmed for quality and cloning vector)
AGCTTGGGGAATTAAGTTTAGTAAGACTTTACACAGGTCTAGAAATGTGACGGACAAAAGGGATCTTGCCTAGGGGCGGAAGCTAAAGCGTTAAATGAAA
ACTTGAGTAGATGGCTTGAATAAAAAAGAATGTATGAATTCAATCATCAATTAAACTACCTAATTAATAGATGTAGCATAACTGGAATTCGTAATTAAAT
ATATAAATACTAATTACATGCAATTCTATAATATATGTAGCATGTGCAGGAAACATGTAATTAAGGTACTAAGTATTAATTAAATCAAATCCTAAATATT
TTAAAAGCCATGCACTACCAATAGGCAATATTCAACTGTATAAATAGCCGTCGTTACTAGCACATGAATTCAATCATCAATTAAACTGCGTAATTAATTA
GGCCTAACCTTAGCTTATTGACATGGCTTCCAAAAATCAGGCCTCTATTACCCTTTTCTTATCACTTAATCTCCTCTTCTTTGCTCTTGTAAGTGCAGAC
TGTTCAACTGATATTTTGAAATTTGGGGCATGTGCTAATATACTTAATGATTTGGTGGGTGTAATTATCGGGACTACTCCAACTTCGTCATGCTGCAGTT
TGATTGACGGACTGGTGGACCTAGACGCCGCGGTTTGCTTGTGCACAGCCCTAAAAGCAGATGTGCTGGGAATTAATTTGGATATATCACTCTCTCTAAA
CATCCTTCTCAACGTCTGTGG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.962331
Expected error %
0.359727
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g12520.1 Score 78 E Value 6e-15 Identity 20.60% Align. Length 164bp (22.75%) Frame 1
68417.m01977 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to 14 kDa polypeptide [Catharanthus roseus] GI:407410; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g12510.1 Score 78 E Value 6e-15 Identity 20.60% Align. Length 164bp (22.75%) Frame 1
68417.m01976 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to 14 kDa polypeptide [Catharanthus roseus] GI:407410; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T03018 Score 80 E Value 4e-14 Identity 21.80% Align. Length 164bp (22.75%) Frame 1
glycine-rich protein 16K - common tobacco dbj|BAA13150.1| NT16 polypeptide [Nicotiana tabacum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAS80139.1| Score 80 E Value 4e-14 Identity 20.00% Align. Length 164bp (22.75%) Frame 1
arachidonic acid-induced DEA1 [Lycopersicon esculentum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0138P06
Clone
Clone name
hba-138p6
LE_HBa0138P06
P138P06
Clone type
BAC
Contamination
none
Estimated length
79,307
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found