Clone Read LE_HBa0147J24_SP6_73054

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0147J24_SP6_73054
Primer
SP6
ID from Seq. Facility
LE_HBa_147_J24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
39 trimmed for vector and quality, 776 raw
Sequence
>LE_HBa0147J24_SP6_73054 (raw untrimmed)
CCAATCATAATTACGCTTCAAGGCCTGTGTCTTGATGTATTAGAACAAAAACACTGCTTCCCTTGTAAGTTACAATCCCATGAAGGGGNNGCNAGAATCA
ACCCAANCAAAACAAAGAACCTTATAGGGAGANAAAGGGCACAAAGAAACNNAGNNCCGCGGACACGCCAGGGGGGAGGNCGCACCCGGCGCGGATTCCC
CAAAAACACACGAGACGGGGCGAANCCAACAAGCACCCCCAGACANGNGGGAAGAGNCCGACCAACAGAGCGAAGAAAAAGCCACAAACCCGAAAAAAGC
GCGCACGCCNACAACAAGAAGGAGCACAAAACCGACACAAACGGCGCNAGCGACACCNCAGAAGACAAGAGCGCCAAGACAGAAAGACACCCCACAGAGG
GAGGAAGACGAACGCGGAAGAGAACAAGCGACGAACGCCAGCAAAAGCGAAGAGAAGGGAGGGGAGCAACCAAGCCGCGAAAAACAACGACAACCAGCAC
CAAGACCAAACCCGAGCCACGCAGACAAGCAAAAGGCCGACACGCACNAAAACGAGGCAAAACAAGACGGAGACAAGAAGGAGACAGAGAAAAGGAACAG
AGAGGGACACCGCCAGAAGGGAGACAAAAGAAGAGCCGCCCGCGAAACAGAAACACCGCACGACGACAACAAAAGGAGCGAAAAACGGGCAACGGAACGA
CCGGGAAAAGGGCAAAGACAAGCCAGAGCCAAAACAGCGGGCCCGGGGAGCAAAACGACCACAGCAACAAACCGAC
>LE_HBa0147J24_SP6_73054 (trimmed for quality and cloning vector)
GATGTATTAGAACAAAAACACTGCTTCCCTTGTAAGTTA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.805274
Expected error %
0.929877
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0147J24
Clone
Clone name
hba-147j24
LE_HBa0147J24
P147J24
Clone type
BAC
Contamination
none
Estimated length
95,945
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found