Clone Read LE_HBa0016F10_T7_78979

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0016F10_T7_78979
Primer
T7
ID from Seq. Facility
LE_HBa_016_F10-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
839 trimmed for vector and quality, 890 raw
Genbank Accession
DU061979
Sequence
>LE_HBa0016F10_T7_78979 (raw untrimmed)
GTTCACCTGGGTCCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGAACCACTATTACCAAAGGCAATAAGTAAAAAAACAAGTTATTAAC
AGTGTAAAGACTCTAAAACACGAGCTATATTTGTTAAAGAAACATTTTACCTTGATTAACTAGGAAAAGAAGTTTAATTAGTAGAATAAATATACCTTAT
ATTGGTGCAGAACCTTGTTGGCTTTCTCTTGCTGCTGTTACAAAGAAGTTTTTTCGTGCTTGATAGCAGATAAATCCTCCTCAAATGAGCGCTTCTCCGT
GTCCGCTGCTTGGCACTTCTTTAGTGCTTCCTGCTCTTTTGCTAAAGCATTATTGACGTTCATAGCATGCTTGCCGGTAGAGAGCATTACGGCTTCCAAA
TCCTTCTTCAGTCCAACATTATCCATATCCAAGGTGTTAAGAAGAGAATAAATTGTCTCACCCATAGAACTAGTATTTACCAACGCTTGCTCCATCTCCA
TAATCCTCCTCATGGTGGTTTCCTCCAGCATATGCTTTTCCTGGTGAACATTTTCAGCATCTTCTTTTTCTTGCCTCATCCTTTTAAGCTCAGCCTGGTC
CTTGCCAAGACTCCAGGTAGCCTGCATTACCTTCTCATTTGCCCAATCAGACCACTCTTGGAGCTCTTCCTGCGGTGTCTTCAAATGAGAAGTTAGAAAC
AATATATTTTCATCTCTCTCATTTCGAGGGACATATTTACCCAAAGACTTATCATATGGGATACCAACATAATAATCTTGCACCGCAGAAGAAATAGTTG
TGTTCGGGGACTTTTTTGCTTGCCTTAGGCTCCAGGGATAATGGAATCCGATCCTTTTCATTTATATTATCTTTAATAAGGGGCCCTTTG
>LE_HBa0016F10_T7_78979 (trimmed for quality and cloning vector)
AGCTTGAACCACTATTACCAAAGGCAATAAGTAAAAAAACAAGTTATTAACAGTGTAAAGACTCTAAAACACGAGCTATATTTGTTAAAGAAACATTTTA
CCTTGATTAACTAGGAAAAGAAGTTTAATTAGTAGAATAAATATACCTTATATTGGTGCAGAACCTTGTTGGCTTTCTCTTGCTGCTGTTACAAAGAAGT
TTTTTCGTGCTTGATAGCAGATAAATCCTCCTCAAATGAGCGCTTCTCCGTGTCCGCTGCTTGGCACTTCTTTAGTGCTTCCTGCTCTTTTGCTAAAGCA
TTATTGACGTTCATAGCATGCTTGCCGGTAGAGAGCATTACGGCTTCCAAATCCTTCTTCAGTCCAACATTATCCATATCCAAGGTGTTAAGAAGAGAAT
AAATTGTCTCACCCATAGAACTAGTATTTACCAACGCTTGCTCCATCTCCATAATCCTCCTCATGGTGGTTTCCTCCAGCATATGCTTTTCCTGGTGAAC
ATTTTCAGCATCTTCTTTTTCTTGCCTCATCCTTTTAAGCTCAGCCTGGTCCTTGCCAAGACTCCAGGTAGCCTGCATTACCTTCTCATTTGCCCAATCA
GACCACTCTTGGAGCTCTTCCTGCGGTGTCTTCAAATGAGAAGTTAGAAACAATATATTTTCATCTCTCTCATTTCGAGGGACATATTTACCCAAAGACT
TATCATATGGGATACCAACATAATAATCTTGCACCGCAGAAGAAATAGTTGTGTTCGGGGACTTTTTTGCTTGCCTTAGGCTCCAGGGATAATGGAATCC
GATCCTTTTCATTTATATTATCTTTAATAAGGGGCCCTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.96973
Expected error %
0.792577
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g03000.2 Score 129 E Value 2e-30 Identity 12.30% Align. Length 602bp (71.75%) Frame 1
68417.m00408 expressed protein contains similarity to hypothetical proteins
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g03000.1 Score 129 E Value 2e-30 Identity 12.30% Align. Length 602bp (71.75%) Frame 1
68417.m00407 expressed protein contains similarity to hypothetical proteins
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB77785.1| Score 131 E Value 3e-29 Identity 12.10% Align. Length 629bp (74.97%) Frame 1
putative protein [Arabidopsis thaliana] gb|AAC79106.1| putative inhibitor of apoptosis [Arabidopsis thaliana] pir||T01393 apoptosis inhibitor homolog T4I9.12 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_192209.2| Score 129 E Value 8e-29 Identity 12.30% Align. Length 602bp (71.75%) Frame 1
expressed protein [Arabidopsis thaliana] ref|NP_974504.1| expressed protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0016F10
Clone
Clone name
hba-16f10
LE_HBa0016F10
P016F10
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found