Clone Read LE_HBa0021L02_T7_80019

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0021L02_T7_80019
Primer
T7
ID from Seq. Facility
LE_HBa_021_L02-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
697 trimmed for vector and quality, 753 raw
Genbank Accession
DU075571
Sequence
>LE_HBa0021L02_T7_80019 (raw untrimmed)
AATGCTCGGTCCGGGAGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGTTAATGCTAGGTACTTCACTTTTCAGCAACAAATCACTTCTCACATG
ACTGAAAGTCTCATTTTTCCCCATCAGGAACATCATCAATCTTTGTTGATGTAAATGCTCAATATAAGGCTTAGCATCATCACATTTACATGATGGTGAG
GGCACCAATACATCATACTCATCCCATAAATCCCTCAATTTAGAATAATACTCTGTTACAGAATCCGTACCTTGCTTTCATGTGGCTACTTCTGTCCAGA
GTTGATAGATCCTAGTGAGATTAGATTTATCAAACCTCTCCTTGAAATCTTCCCAAACTCGTTTTGCATTAGATGCATATACTATTGTTGTTAACATATT
GTTTGCTACTGTGCTACTAATCCATGAAAGAACCACTGCATTGCATCTTTCCCATTGGACTGCTAATTCATCCTTGTACATACTCTTCAAACAAGTTCCA
TCTATGAAGCTTATCTTATTTTTCACCAACAGTGCTAATCTCATCGATCTGCTCCAAAGACCATAATTCTCAAGTCCTGTGAGCTTTGTTGTAATCAATG
CAACACCAGGCATGTCTGAAGGCTGCAGATAGAGTGGATGATTGTGTCCAAGTTTTGCTACAGTAAGTTCGCCATGGCTATAATCTGAGCTTTCAAAAAA
TTACCTTTGCGGAAAGAAAAATTTTGAAATCAAACTAGTCCCTAGTTACCCCT
>LE_HBa0021L02_T7_80019 (trimmed for quality and cloning vector)
AGCTTGGTTAATGCTAGGTACTTCACTTTTCAGCAACAAATCACTTCTCACATGACTGAAAGTCTCATTTTTCCCCATCAGGAACATCATCAATCTTTGT
TGATGTAAATGCTCAATATAAGGCTTAGCATCATCACATTTACATGATGGTGAGGGCACCAATACATCATACTCATCCCATAAATCCCTCAATTTAGAAT
AATACTCTGTTACAGAATCCGTACCTTGCTTTCATGTGGCTACTTCTGTCCAGAGTTGATAGATCCTAGTGAGATTAGATTTATCAAACCTCTCCTTGAA
ATCTTCCCAAACTCGTTTTGCATTAGATGCATATACTATTGTTGTTAACATATTGTTTGCTACTGTGCTACTAATCCATGAAAGAACCACTGCATTGCAT
CTTTCCCATTGGACTGCTAATTCATCCTTGTACATACTCTTCAAACAAGTTCCATCTATGAAGCTTATCTTATTTTTCACCAACAGTGCTAATCTCATCG
ATCTGCTCCAAAGACCATAATTCTCAAGTCCTGTGAGCTTTGTTGTAATCAATGCAACACCAGGCATGTCTGAAGGCTGCAGATAGAGTGGATGATTGTG
TCCAAGTTTTGCTACAGTAAGTTCGCCATGGCTATAATCTGAGCTTTCAAAAAATTACCTTTGCGGAAAGAAAAATTTTGAAATCAAACTAGTCCCT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.947902
Expected error %
0.526744
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g21280.1 Score 112 E Value 1e-25 Identity 11.80% Align. Length 590bp (84.65%) Frame 2
68414.m02659 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89728.1| Score 197 E Value 2e-49 Identity 16.10% Align. Length 557bp (79.91%) Frame 2
putative retroelement pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU93584.1| Score 154 E Value 3e-36 Identity 13.00% Align. Length 608bp (87.23%) Frame 2
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0021L02
Clone
Clone name
hba-21l2
LE_HBa0021L02
C12HBa0021L02
P021L02
Clone type
BAC
Contamination
none
Estimated length
127,568
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found