Clone Read LE_HBa0052A04_SP6_81030

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0052A04_SP6_81030
Primer
SP6
ID from Seq. Facility
LE_HBa_052_A04-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
22 trimmed for vector and quality, 826 raw
Sequence
>LE_HBa0052A04_SP6_81030 (raw untrimmed)
TGGTAGGGGGGTGGACTGCTAGGACGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNANNNNCCATTTTAAGCACANNAAAAN
ANNNNAAAANNNAAAANAAGACCCTTTAGGGCGNNNGACNNAAANAAANAAANNNGAAAGNNACNCAGAAANNNGNAAAAGGAAAAGAAAAANNAGAATT
TAAGTTAAAAGNTATTTTGGNTTAAAAGAAAGTAGAGTAAGTGAATATAAAGAGGTATTAAATAGAGAAGTTTGATTTGTNAATTGNAAGTAGNTGGAGG
NTATATTATTGGTAAAATGTGAAAAGATTNTTAGTGTGTTTATAGTGTANAAAAATATGAATAAAAGTTATTAAGATTTTGTGAATAATATGAAATATTN
AAAATAAATATAATAGAATAATGGTGGATGAGGGTAGAAGTTAATTGAAAGGTGAGGAAATGTTGATTTNATAAG
AAATGAAGATAGTATTTTTTTGTNA
ATATANATGNNTTATAAATTNTATATTTGTAATATATGAATCTAAAGGCCCCAAAAGTNTNAANTNCCGAAATTTGAGTTTTAAGTTTTTTTGTGTTGTG
TTTATTGTAATGNAAAGAANTTTTAAGAANAATAATAATATTAAATAATAGTTTACAATTTTAGAAAATATAATTAAGGGAAAAAATAATTTTATATAAA
TGAATTAAAAGTATTTTTTTTTAGAAAAATAAAATTAAGGGTAAAAATGATTTTATATAAATGAAAAATAAAGTAAATAAAGGGATATTTAAAGTTATAT
AGAAAGTTTTAATTTTTAAAATAAGG
>LE_HBa0052A04_SP6_81030 (trimmed for quality and cloning vector)
AAATGAAGATAGTATTTTTTTG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.3843
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0052A04
Clone
Clone name
hba-52a4
LE_HBa0052A04
P052A04
Clone type
BAC
Contamination
none
Estimated length
108,246
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found