Clone Read LE_HBa0052A04_T7_81031

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0052A04_T7_81031
Primer
T7
ID from Seq. Facility
LE_HBa_052_A04-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
366 trimmed for vector and quality, 894 raw
Sequence
>LE_HBa0052A04_T7_81031 (raw untrimmed)
CAGGCCCCGGTCCCGGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTGGCAACTTTTTCAGCAGCCCGTACAGGGGAATGAGTAGCCATTTNN
GCACNACAATGAGACCTAAAGGAGAGAGGGGCAAGCAGAGGCAGNNNCAANACAGAGACAAAAAAAAAAGAGAAGAAAAAACAGCCAAGCCACACGAGGA
AAAAAAGGANACACNANAAACAAAAAGGAAAAAGGGAGAAAGGCAAAGGGANAGNNNAAGGAGCANCNAAANNANAACAAANGAANANNNGCAANCCCAA
GAAAACNAAGCNCANGANNNNAACCNNAAAAANNAANCANNCAAAAAGAANANGNCAAAACAAAANCNANNNNGACCCNNCNANAANAANAANAAANAAA
NAAAACAAAAAAAAANAANAAAAAGNANNCAANCANAANNAANCAGCAAAAAGAGANGGGAAACANAGANCNANCANNAACGGAGNAAAGGANAANNAAA
NNAANANNAGAAGNGANANANNNNANAAGAGACAGNCAAACAANNGAAAAAANANCNAGCAANCCAAGAACNAAGCANNNNNANNNGNANGNANAAACCN
AACCAAGAAAAGAANAANCNNAAANCNANNANCAANNCANNNAGCAAACAACCCNCAAAAANNANGAANNCAAAGCANAAAAAAGGAAANCCNNAAAGCA
AAAAANAAAAAAAAANNNAAACACCAAAANNCACANAGAAGGGCAAAACNAAAAGGAAAANACAACAACAAAAAAAAGAAAAAGAAAAGGACAACNNNNA
AGAAGAANNNNGNNNAAAAAAACCAACAAACCNCGAAAGAGGGGACGACAAGGCCAAAACAAGCAAAGGAAAAAAAACCAACAACCGAAAAAAC
>LE_HBa0052A04_T7_81031 (trimmed for quality and cloning vector)
AGCTTTGGCAACTTTTTCAGCAGCCCGTACAGGGGAATGAGTAGCCATTTNNGCACNACAATGAGACCTAAAGGAGAGAGGGGCAAGCAGAGGCAGNNNC
AANACAGAGACAAAAAAAAAAGAGAAGAAAAAACAGCCAAGCCACACGAGGAAAAAAAGGANACACNANAAACAAAAAGGAAAAAGGGAGAAAGGCAAAG
GGANAGNNNAAGGAGCANCNAAANNANAACAAANGAANANNNGCAANCCCAAGAAAACNAAGCNCANGANNNNAACCNNAAAAANNAANCANNCAAAAAG
AANANGNCAAAACAAAANCNANNNNGACCCNNCNANAANAANAANAAANAAANAAAACAAAAAAAA

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.937495
Expected error %
29.6349
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0052A04
Clone
Clone name
hba-52a4
LE_HBa0052A04
P052A04
Clone type
BAC
Contamination
none
Estimated length
108,246
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found