Clone Read LE_HBa0093H07_T7_85981

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0093H07_T7_85981
Primer
T7
ID from Seq. Facility
LE_HBa_093_H07-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
679 trimmed for vector and quality, 893 raw
Sequence
>LE_HBa0093H07_T7_85981 (raw untrimmed)
TCTTGTCTGGTCCCCGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCCAGATTACTCTGTCATGGAACAATTGAAGAAGACGCCTGCACAAAT
TTCACTGTTGCCTCTACTTTTGCACTCAGAAGAACATCGCCTTGTGTTGAATAAGGTTTTAAATGAAGCACATGTGCCAAAAGAGACCACAGTAAATCAG
TTGGAGAATATGACCAAGCGCGTTTTCGAGGCAAAAGCCATCACTTTCACTAATGATGAGTTGCCCTAGGAGGAAGCTGGACACAACAAAGCTTTGCATC
TTACAGTGACATGTGAAGGTTACTATGTAAAGACGGTCATGATAGATGGAGGGTCAAGGGTAGACATATGTCCTCTTTCTACGCTGCAAAGCTTGAAAGT
TAACATTGACAGAATTCGCACCCAGTAATGTACTTGTACGAGCTTATGACGGCTCAAGGAGGGATACCATTGGTGAAATCAAGTTAAACATGACAATTGG
GCCAGTAGTCTTTACGATTGTGTTCCAAGCAATGGATATGGAAACATCTTATAATTTTCTACTAGGAACGCCATGGATCCACATGGCTCGATCCGTCCCA
TCAACTCTATAACAAGTTGTCATGTTTGAATACAACATTGTTCATGGGGAAGATGAATTACCTCTTTTACATAGATCCATCTGTCCCATACATTTAGGCA
AACGAAGGATGTGATCCTGTTGTTTACTAGTCCTTTGAGGTTGTATTATTCCATCTCTTTAAAAAAGGAGAATCCTTCATCCAATCATGTATCTCTTCTT
CCCTTTCATGGTAGCACCACAATGCCCAATTCTGTTATTACCTCTTATCGGTTTGATTCTGCGTCCGATCTATGAATCTCTCTCTTCTTTGGT
>LE_HBa0093H07_T7_85981 (trimmed for quality and cloning vector)
AGCTTCCAGATTACTCTGTCATGGAACAATTGAAGAAGACGCCTGCACAAATTTCACTGTTGCCTCTACTTTTGCACTCAGAAGAACATCGCCTTGTGTT
GAATAAGGTTTTAAATGAAGCACATGTGCCAAAAGAGACCACAGTAAATCAGTTGGAGAATATGACCAAGCGCGTTTTCGAGGCAAAAGCCATCACTTTC
ACTAATGATGAGTTGCCCTAGGAGGAAGCTGGACACAACAAAGCTTTGCATCTTACAGTGACATGTGAAGGTTACTATGTAAAGACGGTCATGATAGATG
GAGGGTCAAGGGTAGACATATGTCCTCTTTCTACGCTGCAAAGCTTGAAAGTTAACATTGACAGAATTCGCACCCAGTAATGTACTTGTACGAGCTTATG
ACGGCTCAAGGAGGGATACCATTGGTGAAATCAAGTTAAACATGACAATTGGGCCAGTAGTCTTTACGATTGTGTTCCAAGCAATGGATATGGAAACATC
TTATAATTTTCTACTAGGAACGCCATGGATCCACATGGCTCGATCCGTCCCATCAACTCTATAACAAGTTGTCATGTTTGAATACAACATTGTTCATGGG
GAAGATGAATTACCTCTTTTACATAGATCCATCTGTCCCATACATTTAGGCAAACGAAGGATGTGATCCTGTTGTTTAC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.980491
Expected error %
0.40652
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90285.1| Score 96 E Value 8e-41 Identity 43.10% Align. Length 676bp (99.56%) Frame 1
putative gag/pol polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89777.1| Score 92 E Value 1e-17 Identity 12.10% Align. Length 413bp (60.82%) Frame 1
gag-pol polyprotein-like [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0093H07
Clone
Clone name
hba-93h7
LE_HBa0093H07
P093H07
Clone type
BAC
Contamination
none
Estimated length
77,218
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found