Clone Read LE_HBa0046K15_T7_94589

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0046K15_T7_94589
Primer
T7
ID from Seq. Facility
LE_HBa_046_K15-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
837 trimmed for vector and quality, 967 raw
Genbank Accession
DU056170
Sequence
>LE_HBa0046K15_T7_94589 (raw untrimmed)
TGATCTGCGGGGTACTTGGGGTTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTACAAACTTTGTGTTCTTGACCCCCATTAAGGGATCCATCTGGTTG
TTTCATGTAAACCTCTTCCTTTAGATCTCCATTCAGAAATGCAGTCTTCACACCCATTTGATGTATTACCAGGCTATGAATTGCGGATAAAGCAATCAAG
AGTCTAATAGAAGTCATTCGAGCTACAGGAGCAAATGTATCAAAATAATCAATATCTTTCAATTGAGTAAAACCTTTTGCCACCAAACGAGCTTTGTACT
TATCTAAGGTTCCATCAGATTTTAATTTCTTTCTAAAGATCCATCTACAACCAATAGACTTACATCCAGGAGGGAGGTCTGATAAAATCCATGTATTGTT
TGACATAATGGAGTGCATTTCATCATCAATAGCTTCACGCCAGAATGGAGCATCATGTGAAGCCATTGCTTCAGCATAACTTTCAAGATCCCTTTCAACT
AAATAGACTTGAAAATTTGGTCCAAAGTCTCTTGGTTTGGCTGATCTTGCACTACGTCTTGGTTGACTTTCTTCCAAAGGTTCAACTATTTTTTTTAAGA
GTAGATATAGAAGAACTTGTATTTTGTTCCAAAGACTCATTTTTCTTAGGAAATATATGCTCAAAAAAGTTAGCATGCAACGATTCAATAATTGTGTGAG
GGCTTGGAGTCTCAAGATTTCAAAAATCTATAAGCCTTACTGGGTTGTGAATAACCAATAAATACACAATCTACTCCTGTATATCCAATCTTAGTCAATT
GTTGATCTGGTAATCTAACATGAGCCAAACAACCCCCTACTTTAAAAAAGTTTATATTTGGCTTTCGATTCTCCCAAGTTCTAAAGAGATGATTCTTGTT
TCTGGAATGACTTGATGCAAATTGACATAAGAAAATAAGGGTTATTCCTAATTTTCAAGGATCCCAA
>LE_HBa0046K15_T7_94589 (trimmed for quality and cloning vector)
AGCTTACAAACTTTGTGTTCTTGACCCCCATTAAGGGATCCATCTGGTTGTTTCATGTAAACCTCTTCCTTTAGATCTCCATTCAGAAATGCAGTCTTCA
CACCCATTTGATGTATTACCAGGCTATGAATTGCGGATAAAGCAATCAAGAGTCTAATAGAAGTCATTCGAGCTACAGGAGCAAATGTATCAAAATAATC
AATATCTTTCAATTGAGTAAAACCTTTTGCCACCAAACGAGCTTTGTACTTATCTAAGGTTCCATCAGATTTTAATTTCTTTCTAAAGATCCATCTACAA
CCAATAGACTTACATCCAGGAGGGAGGTCTGATAAAATCCATGTATTGTTTGACATAATGGAGTGCATTTCATCATCAATAGCTTCACGCCAGAATGGAG
CATCATGTGAAGCCATTGCTTCAGCATAACTTTCAAGATCCCTTTCAACTAAATAGACTTGAAAATTTGGTCCAAAGTCTCTTGGTTTGGCTGATCTTGC
ACTACGTCTTGGTTGACTTTCTTCCAAAGGTTCAACTATTTTTTTTAAGAGTAGATATAGAAGAACTTGTATTTTGTTCCAAAGACTCATTTTTCTTAGG
AAATATATGCTCAAAAAAGTTAGCATGCAACGATTCAATAATTGTGTGAGGGCTTGGAGTCTCAAGATTTCAAAAATCTATAAGCCTTACTGGGTTGTGA
ATAACCAATAAATACACAATCTACTCCTGTATATCCAATCTTAGTCAATTGTTGATCTGGTAATCTAACATGAGCCAAACAACCCCCTACTTTAAAAAAG
TTTATATTTGGCTTTCGATTCTCCCAAGTTCTAAAGA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.953971
Expected error %
1.383
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 144 E Value 6e-35 Identity 16.90% Align. Length 353bp (42.17%) Frame 1
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM22635.1| Score 218 E Value 2e-69 Identity 56.40% Align. Length 832bp (99.40%) Frame 1
Gag and Pol [Zea mays]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_463420.1| Score 216 E Value 2e-68 Identity 57.60% Align. Length 832bp (99.40%) Frame 1
putative gag and pol [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0046K15
Clone
Clone name
hba-46k15
LE_HBa0046K15
P046K15
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found