Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0126J06_SP6_97594

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0126J06_SP6_97594
Primer
SP6
ID from Seq. Facility
LE_HBa_126_J06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
735 trimmed for vector and quality, 913 raw
Genbank Accession
DU057767
Sequence
>LE_HBa0126J06_SP6_97594 (raw untrimmed)
GGCGGAGGATTCCCGAGTTAATAAGATACATATGAAAATCAGCTTCTACATCATTAACTTCAATTCGAACCACTTTTCCTTCACCTTTAAGTACACCCTG
AAATTTTCCGAATCGAACATGCCAAGGGGTACTCCTAAAAGTCTCATCATTCTGCTTCACAACAATTACATCAACTGCTCCACCAAAAGGGTGAAATGGG
GTGGCAACTGAATACACACCCTGTGTTATAAAGCTACTAACTTTACCAACCACATTCATTTGCACCCCTCAAAAACTCAAAACCCCAGATACAAAATTAT
CAAAAACTCCAATTATTTAAACCTACAACGTAATTTTCTTCGTAAATCAAAAAACAACCTGATCCAATCCACAATCTGCATGGAATCAAATAGTAGCAAA
TTCATGTGTGATCATACATGTTACAAATTCGAAATACCCAAATAACATAAATTTTATATCTATAAGCTTCAAAATGCAAAACCCAAATGAAATTTTTCGA
TAAAAATGCATGAGAACGAAGGATTCATGAACAAAAATATGAAAACTTACAGATTGAAATTTTCAATGTGACAAAAATTGAATGTAGCCCAGAAAATCTT
CAAGCTCCAATTATATAAGTGGATCAATTCGAAATTGATCTCACCGCTAAATGGGGTTGAAGAATGAAGAAAATAATATACCCGAAGATTCTTTTTCTGA
GATTTTTTTCGTCACCTTTTTCAATTATATAATACTTTTTGTATTATCATATAATATAACAAAAATGATAACTTACTATTAAATTTAGTATATTTTTTAT
ATTAAAAATATTAAATTAAATTGAAATTTGAATTATAAGTTAATTTGGAAAGAAAGATAGATAGACAGTTTAACTTAATTTTCATGATAATAAATATGAT
GCATATTTGGACA
>LE_HBa0126J06_SP6_97594 (trimmed for quality and cloning vector)
TACATATGAAAATCAGCTTCTACATCATTAACTTCAATTCGAACCACTTTTCCTTCACCTTTAAGTACACCCTGAAATTTTCCGAATCGAACATGCCAAG
GGGTACTCCTAAAAGTCTCATCATTCTGCTTCACAACAATTACATCAACTGCTCCACCAAAAGGGTGAAATGGGGTGGCAACTGAATACACACCCTGTGT
TATAAAGCTACTAACTTTACCAACCACATTCATTTGCACCCCTCAAAAACTCAAAACCCCAGATACAAAATTATCAAAAACTCCAATTATTTAAACCTAC
AACGTAATTTTCTTCGTAAATCAAAAAACAACCTGATCCAATCCACAATCTGCATGGAATCAAATAGTAGCAAATTCATGTGTGATCATACATGTTACAA
ATTCGAAATACCCAAATAACATAAATTTTATATCTATAAGCTTCAAAATGCAAAACCCAAATGAAATTTTTCGATAAAAATGCATGAGAACGAAGGATTC
ATGAACAAAAATATGAAAACTTACAGATTGAAATTTTCAATGTGACAAAAATTGAATGTAGCCCAGAAAATCTTCAAGCTCCAATTATATAAGTGGATCA
ATTCGAAATTGATCTCACCGCTAAATGGGGTTGAAGAATGAAGAAAATAATATACCCGAAGATTCTTTTTCTGAGATTTTTTTCGTCACCTTTTTCAATT
ATATAATACTTTTTGTATTATCATATAATATAACA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.924831
Expected error %
0.168527
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g09560.2 Score 126 E Value 1e-29 Identity 25.50% Align. Length 230bp (31.29%) Frame 1
68416.m01136 lipin family protein contains Pfam profile: PF04571 lipin, N-terminal conserved region
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g09560.1 Score 126 E Value 1e-29 Identity 25.50% Align. Length 230bp (31.29%) Frame 1
68416.m01135 lipin family protein contains Pfam profile: PF04571 lipin, N-terminal conserved region
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF23287.1| Score 126 E Value 7e-28 Identity 25.50% Align. Length 230bp (31.29%) Frame 1
unknown protein [Arabidopsis thaliana] ref|NP_974268.1| lipin family protein [Arabidopsis thaliana] ref|NP_187567.1| lipin family protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_475380.1| Score 123 E Value 6e-27 Identity 25.10% Align. Length 230bp (31.29%) Frame 1
putative lipin 2 [Oryza sativa (japonica cultivar-group)] gb|AAT39187.1| putative lipin 2 [Oryza sativa (japonica cultivar-group)] gb|AAT39180.1| putative lipin 2 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0126J06
Clone
Clone name
hba-126j6
LE_HBa0126J06
P126J06
Clone type
BAC
Contamination
none
Estimated length
98,283
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found