SGN Marker SSR335

SGN-M1008

SynonymsNone
Locus associationsNone
SSR info 

Annealing temperatures: Low: 50 High: 55
Repeat motif: TCT   Repeat number: 6
Repeat motif:    Repeat number:
Forward primer: CCTCTCCATTCTGTGGTGGT
Reverse primer: AACCGTCCTCGATTTCACAC
Predicted size: 225
Mapped locations  
Map: Tomato-EXPIMP 2009   
Map version
126 (location: 53498)
Chromosome
8
Position
48.00 cM
Confidence
uncalculated
Protocol
SSR


Tomato-EXPIMP 2009

Map: Sun1642 x LA1589   
Map version
85 (location: 43802)
Chromosome
8
Position
47.90 cM
Confidence
uncalculated
Protocol
SSR


Sun1642 x LA1589

PCR data   Exp. ID 44811
Forward primer (5'-3')
CCTCTCCATTCTGTGGTGGT
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
AACCGTCCTCGATTTCACAC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589   
Map version
79 (location: 43262)
Chromosome
8
Position
44.00 cM
Confidence
uncalculated
Protocol
SSR


Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589

PCR data   Exp. ID 44625
Forward primer (5'-3')
CCTCTCCATTCTGTGGTGGT
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
AACCGTCCTCGATTTCACAC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPIMP 2008   
Map version
55 (location: 40797)
Chromosome
8
Position
51.00 cM
Confidence
uncalculated
Protocol
SSR


Tomato-EXPIMP 2008

Map: Tomato-EXPEN 2000   
Map version
52 (location: 39227)
Chromosome
8
Position
49.70 cM
Confidence
I
Protocol
SSR


Tomato-EXPEN 2000
Other PCR data 
PCR data   Exp. ID 14128
Forward primer (5'-3')
CCTCTCCATTCTGTGGTGGT
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
AACCGTCCTCGATTTCACAC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 225
Solanum lycopersicum LA925: 225+227
 Approximate temperature
55°C
  
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of SSR335  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D1008 marker 1008
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